RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11230
(553 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 346 bits (890), Expect = e-114
Identities = 125/461 (27%), Positives = 198/461 (42%), Gaps = 60/461 (13%)
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
+ + G TPLH+A+ G+ +V+ L+ GA N + LH+A
Sbjct: 5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK 64
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH 215
LL+ A +N + +T A
Sbjct: 65 YLLQNKAKVNAKAKDDQTPLHCA------------------------------------- 87
Query: 216 LVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFI 274
R GH N VKL+LE AN + T L IA GH++ V LL+ A + +
Sbjct: 88 -ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 275 HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYH 334
+PLH+A + + + +LLL + + N G PLH+ V + + K LL
Sbjct: 147 FTPLHVAAKYGKVRVAELLL---ERDAHPNAAGKNGLTPLHVAVHHNNLDIV--KLLLPR 201
Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
G + + TPLHIA + + L+++G N QG PLH+A Q G+ +
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261
Query: 395 N-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEM 453
L+ AN N NK TPLH+ ++ ++ + L++HG VDA T++G PL++A
Sbjct: 262 ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321
Query: 454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKG 513
N+ +V+ LL+ +A+VN+ + G + LH A + + I+ LL N A N G
Sbjct: 322 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS----DG 377
Query: 514 YTPLHLAVESNNEAVINKL---LDYNPDLDVKDKNGNTALH 551
TPL +A +V + L D + V DK+ +
Sbjct: 378 TTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418
Score = 344 bits (884), Expect = e-113
Identities = 125/489 (25%), Positives = 205/489 (41%), Gaps = 69/489 (14%)
Query: 34 RGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
G + + G + LH+A+ + +V+ LL+ N + T LH +A+
Sbjct: 3 PGISGGGG-GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLH-MAARA-GH 59
Query: 93 PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
+ L N+A VN K K+ TPLH AAR G+ MV++L+++ A+ G+ LH+
Sbjct: 60 TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 119
Query: 153 A--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHE 204
A V LL K A G T +A
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVA-------------------------- 153
Query: 205 NVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
+ G +L+LE+ A+ +A + T L +AV H +L IV+ LL
Sbjct: 154 ------------AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 265 GACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSW 323
G S ++PLH+A ++ + + + LL + N + PLHL Q
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLL---QYGGSANAESVQGVTPLHLAAQEG-- 256
Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
+ M LL AN N+ + TPLH+ + +L+KHG V+ G PLH
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316
Query: 384 IAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL 442
+A G + + L++H A+VNA+ K +PLH A +Q + + LL++GA + +
Sbjct: 317 VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD 376
Query: 443 GKDPLYIAVEMHNLSIVEQLLKF---KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
G PL IA + +S+ + L + V SD+ + ++ +L
Sbjct: 377 GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVS 427
Query: 500 ADINAKIIS 508
D ++IS
Sbjct: 428 EDEGEELIS 436
Score = 214 bits (548), Expect = 5e-64
Identities = 75/350 (21%), Positives = 133/350 (38%), Gaps = 62/350 (17%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
A K+G T A + +A+LL ER A+ N +G + LH+A N + +V
Sbjct: 137 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIV 195
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LLL ++ G T LH +A+ + + L + N ++ +G TPLH+AA
Sbjct: 196 KLLLPRGGSPHSPAWNGYTPLH-IAAKQNQVEV-ARSLLQYGGSANAESVQGVTPLHLAA 253
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
+ G+ +MV +L+ A+ N G LH+ +L++ G ++ G T
Sbjct: 254 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 313
Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGA 233
+A G+ VK +L+ A
Sbjct: 314 PLHVA--------------------------------------SHYGNIKLVKFLLQHQA 335
Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQL 292
+V+AK +L + L A + GH IV LL +GA + + +PL +A +I++ +
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDV 395
Query: 293 LLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKD 342
L + + + V +L + +
Sbjct: 396 LKVVTDETSFVLVSDKHRMSFPETV-----------DEILDVSEDEGEEL 434
Score = 213 bits (546), Expect = 9e-64
Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 5/219 (2%)
Query: 334 HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI 393
G + + TPLH+A V L++ GA NV + + + PLH+A + G+ +
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 394 PN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
L+++ A VNA+ K +TPLH A + + + LLE+ A + T G PL+IA
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122
Query: 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWK 512
++ V LL+ +A+ + G T LH+A K V + E LL A NA +
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN---- 178
Query: 513 GYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
G TPLH+AV NN ++ LL NG T LH
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 217
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 268 bits (687), Expect = 2e-85
Identities = 69/460 (15%), Positives = 131/460 (28%), Gaps = 109/460 (23%)
Query: 98 ILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGIL 157
+ + N + E +H+AAR G VR LI+ G
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGV-------------------- 44
Query: 158 LRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLV 217
++N FG TA +A
Sbjct: 45 -----SPTIQNRFGCTALHLA--------------------------------------C 61
Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSP 277
+ G + K + G + + +AV +V L++ P
Sbjct: 62 KFGCVDTAKYLASVGEVHSLWHG--QKPIHLAVMANKTDLVVALVEGAKERG-----QMP 114
Query: 278 LHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN 337
L E + + I + K + LH V M K L+ GA+
Sbjct: 115 ESLLNECDEREVNE---------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLV-----KHGADVNVIDNQGQMPLHIAVQNGYVA 392
KD ++TPL A+E + +A+ L++ K ++ + QG LH A+ +
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225
Query: 393 IPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAV 451
+ + G +VN + PL+++V + LL+ + +
Sbjct: 226 VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN------ 279
Query: 452 EMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIW 511
V + A +L+ L ++ + +G
Sbjct: 280 --------------GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTG-- 323
Query: 512 KGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+ AV L + + + ++ +
Sbjct: 324 --AGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSA 361
Score = 225 bits (575), Expect = 8e-69
Identities = 54/434 (12%), Positives = 123/434 (28%), Gaps = 98/434 (22%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRL 60
+ ++ E + A QT + L E G + G + LH+A +
Sbjct: 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ-NRFGCTALHLACKFGCVDT 68
Query: 61 VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
+ L + G +H +A + + V L V + G P +
Sbjct: 69 AKYLASVGEVHSLWH--GQKPIH-LAVMANKTDL-VVAL------VEGAKERGQMPESLL 118
Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA----------VGILLRKGADINVENNF 170
++ + K+ +G ALH + IL++ GA ++
Sbjct: 119 NECDEREVNEIGSH------VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA 172
Query: 171 GKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILE 230
+T A + ++ A+ L+++
Sbjct: 173 DETPLMRA--------------------------------------MEFRNREALDLMMD 194
Query: 231 KG-----ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEK 284
+ ++ + L A+ + ++ G V+ PL+L++
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA 254
Query: 285 QHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDE 344
+ + + LL++ + + ++G V
Sbjct: 255 AMVLLTKELLQKTDVFLIQACP-------------------------YHNGTTVLPDRVV 289
Query: 345 NKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANV 403
+ A + + + LL + +V N G + A+ + A V
Sbjct: 290 WLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349
Query: 404 NARNKYAKTPLHIA 417
R++ ++
Sbjct: 350 RTRSRSRARSSAVS 363
Score = 220 bits (564), Expect = 3e-67
Identities = 57/344 (16%), Positives = 119/344 (34%), Gaps = 37/344 (10%)
Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEK 284
+ N D + +A G V L++ G +F + LHLA +
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63
Query: 285 QHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDE 344
+ + L + + + P+HL V + L+
Sbjct: 64 GCVDTAKYLA---SVGEVHSLWH--GQKPIHLAVMANKTDLV--VALVEGAKERG----- 111
Query: 345 NKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN---LIRHGA 401
+ P + E + +V +GQ LH V G + L++ GA
Sbjct: 112 -QMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164
Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLE-----HGAQVDARTQLGKDPLYIAVEMHNL 456
+ A++K +TPL A+E +N AL+ +++ ++D + G L+ A+ ++
Sbjct: 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE 224
Query: 457 SIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK---------II 507
+ + ++ +VN D L+L+V+ V + + LL + ++
Sbjct: 225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284
Query: 508 SGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+ A + + + V+ L + ++ G
Sbjct: 285 PDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAV 328
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 248 bits (637), Expect = 4e-78
Identities = 97/410 (23%), Positives = 154/410 (37%), Gaps = 78/410 (19%)
Query: 27 IAKLLAERGANINDPFPDDGKSCLHIAATKN--IRLVRLLLEYNVDVNAVDNLGNTVLHT 84
A LA+ A + K L AA +L+ LL NV+ +A D +T LH
Sbjct: 6 SALDLADPSAKAVLT-GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH- 63
Query: 85 VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
+A+ R V++L + A+V+ K+K G PLH A G+Y++ +L+ HGA +
Sbjct: 64 LAAGYNRVRI-VQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122
Query: 145 QGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVN 196
+ LH A +LL GAD + N GK+A MA + + K
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK---- 178
Query: 197 VEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH-- 254
G LL R VK L + Q +TAL AV H
Sbjct: 179 -------------GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPK 225
Query: 255 -LKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKA 312
++ E LL GA V+ + +PLH+A E+ H ++++L +
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK----------------- 268
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
HGA +N D +T LH A + LL+ +G+D +
Sbjct: 269 ---------------------HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 373 VIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKN 422
+I QG + + ++ + + L A + +
Sbjct: 308 IISLQGFTAAQMGNEAVQQ----ILSESTPMRTSDVD--YRLLEASKAGD 351
Score = 245 bits (627), Expect = 1e-76
Identities = 79/446 (17%), Positives = 147/446 (32%), Gaps = 114/446 (25%)
Query: 94 TAVEILKTNRANVNIKNKEGDTPLHIAARTGNYK-MVRVLIDHGAHTECKNHQGYNALHV 152
+A+++ + A + + L AAR+GN + ++ +L + + + LH+
Sbjct: 6 SALDLADPS-AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64
Query: 153 AVG--------ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHE 204
A G +LL+ GAD++ ++ G A
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA-------------------------- 98
Query: 205 NVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
GH +L+L+ GA V+A D T L A +++ LL H
Sbjct: 99 ------------CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 265 GACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSW 323
GA + S + +A + +
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEF----------------------------- 177
Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
+ + L A E+ V + + LH
Sbjct: 178 --------------------KGHSLLQAAREADL-AKVKKTLALEIINFKQPQSHETALH 216
Query: 384 IAVQNGYVAIPN----LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR 439
AV + + L+R GANVN +NK TPLH+A E+ + + L +HGA+++A
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL 276
Query: 440 TQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK 499
LG+ L+ A +L LL + ++ + G T + + ++ +L
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSES 331
Query: 500 ADINAKIISGIWKGYTPLHLAVESNN 525
+ + L A ++ +
Sbjct: 332 TPMRTSDVDY------RLLEASKAGD 351
Score = 240 bits (616), Expect = 6e-75
Identities = 80/379 (21%), Positives = 138/379 (36%), Gaps = 48/379 (12%)
Query: 124 GNY-KMVRVLIDHGAHTECKNHQGYNALHVA---------VGILLRKGADINVENNFGKT 173
G + K L D A + L A + +L + + + T
Sbjct: 1 GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60
Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHL-VRNGHQNAVKLILEK 231
+A ++L L++G +V + K GG + LH GH +L+L+
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADV-------HAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIV 290
GA V+A D T L A +++ LL HGA + S + +A + +
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173
Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
+ + L + + K L + ++T LH
Sbjct: 174 TYEFK--------------GHSLLQAAREA---DLAKVKKTLALEIINFKQPQSHETALH 216
Query: 351 IAIES---QCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNAR 406
A+ S + LL++ GA+VN + PLH+A + + + L +HGA +NA
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL 276
Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK 466
+ +T LH A ++ LL +G+ + G + E V+Q+L
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSES 331
Query: 467 ANVNSSDQFGRTVLHLAVK 485
+ +SD R L A K
Sbjct: 332 TPMRTSDVDYR--LLEASK 348
Score = 238 bits (611), Expect = 3e-74
Identities = 80/385 (20%), Positives = 142/385 (36%), Gaps = 48/385 (12%)
Query: 169 NFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGH-QNAVKL 227
FGK+A ++ LL R+G+ + + L
Sbjct: 2 EFGKSA-------------LDLADPSAKAV-----LTGEYKKDELLEAARSGNEEKLMAL 43
Query: 228 ILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQH 286
+ N HA D T L +A + ++IV+ LL HGA V + + PLH A H
Sbjct: 44 LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH 103
Query: 287 IAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENK 346
+ +LLL + +N PLH + LL HGA+ + + K
Sbjct: 104 YEVTELLL---KHGACVNAMDLWQFTPLHEAASKNRVEVC--SLLLSHGADPTLVNCHGK 158
Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNAR 406
+ + +A + + ++ K + L A + + + +
Sbjct: 159 SAVDMAPTPELRERLTYEFKGHS-----------LLQAAREADLAKVKKTLALEIINFKQ 207
Query: 407 NKYAKTPLHIAVE---QKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
+ +T LH AV K LL GA V+ + + PL++A E + ++E L
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 464 KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVES 523
K A +N+ D G+T LH A ++ LL +D + + +G+T + E
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL----QGFTAAQMGNE- 322
Query: 524 NNEAVINKLLDYNPDLDVKDKNGNT 548
+ ++L + + D +
Sbjct: 323 ----AVQQILSESTPMRTSDVDYRL 343
Score = 228 bits (583), Expect = 5e-70
Identities = 81/332 (24%), Positives = 127/332 (38%), Gaps = 25/332 (7%)
Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLK-IVEFLLDHGACVDSL-QFIHSPLHLAI 282
+ + A + K L A G+ + ++ L + +PLHLA
Sbjct: 7 ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 283 EKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKD 342
+ IVQLLL + +++ K PLH + T + LL HGA VN D
Sbjct: 67 GYNRVRIVQLLL---QHGADVHAKDKGGLVPLHNACSYGHYEVT--ELLLKHGACVNAMD 121
Query: 343 DENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGAN 402
TPLH A + SLL+ HGAD +++ G+ + +A G
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG-- 179
Query: 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE---MHNLSIV 459
+ L A E +++ + L + Q + L+ AV +
Sbjct: 180 --------HSLLQAARE-ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA 230
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
E LL+ ANVN ++ T LH+A + + ++E L + A +NA G T LH
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS----LGQTALHR 286
Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
A + + LL Y D + G TA
Sbjct: 287 AALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ 318
Score = 127 bits (323), Expect = 6e-33
Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 33/200 (16%)
Query: 3 ADVNATNKEGITLFQQAI-----------VSSQTP-----------IAKLLAERGANIND 40
AD N G + A + + K LA N
Sbjct: 148 ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ 207
Query: 41 PFPDDGKSCLHIAA----TKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAV 96
P ++ LH A K ++ LLL +VN + T LH VA+ + + +
Sbjct: 208 P--QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH-VAAERAHNDV-M 263
Query: 97 EILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--- 153
E+L + A +N + G T LH AA G+ + R+L+ +G+ + QG+ A +
Sbjct: 264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEA 323
Query: 154 VGILLRKGADINVENNFGKT 173
V +L + + + +
Sbjct: 324 VQQILSESTPMRTSDVDYRL 343
Score = 85.6 bits (213), Expect = 2e-18
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
A+VN NK+ +T A + + ++L + GA +N D G++ LH AA ++
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD---SLGQTALHRAALAGHLQ 294
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
RLLL Y D + + G T + + AV+ + + + + D L
Sbjct: 295 TCRLLLSYGSDPSIISLQGFTAAQ-MGN------EAVQQILSESTPMRTSDV--DYRLLE 345
Query: 120 AARTGN 125
A++ G+
Sbjct: 346 ASKAGD 351
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 224 bits (572), Expect = 3e-68
Identities = 65/399 (16%), Positives = 127/399 (31%), Gaps = 67/399 (16%)
Query: 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-V 217
K + + + A L+ H
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQ---------------HYSLYPNPQGY 69
Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSP 277
NG+ + L G I E + + + +
Sbjct: 70 GNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRHNRTV 128
Query: 278 LHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN 337
LH + L+ K + GA+
Sbjct: 129 LHWIASNSSAEKSEDLI------------------------------VHEAKECIAAGAD 158
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
VN D + TPL +A+ ++ V+ L+K GAD + + + LH A N + +
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218
Query: 397 IRH---GANVNARNKYAKTPLHIAVEQKN---MSALNYLLEHGAQVDARTQLGKD----- 445
+ ++ ++ T L I + +++ L+E GA+VD KD
Sbjct: 219 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278
Query: 446 ---PLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
L+ A ++ N+ IV+ L+ K +N + D+ G+T + LA + + ++ L+ A
Sbjct: 279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS 338
Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLD 540
+ A +T LA +N+ +++ P+ +
Sbjct: 339 VEAVDA----TDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 215 bits (551), Expect = 4e-65
Identities = 62/358 (17%), Positives = 116/358 (32%), Gaps = 28/358 (7%)
Query: 100 KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLR 159
+ + L A+ G K R + H + G +
Sbjct: 24 EEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFL-GDFNHT 82
Query: 160 KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRN 219
++ E + VN+ +H +L + N
Sbjct: 83 NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIID------PRHNRTVLHWIASN 135
Query: 220 GHQNAV--------KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
K + GA+V+A D T L +AV ++V +L+ GA
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 195
Query: 272 -QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNT-TMFK 329
+ S LH A + ++ +L +I L +V + + K
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255
Query: 330 TLLYHGANVNV--------KDDENKTPLHIAIESQCWDAVSLLVKH-GADVNVIDNQGQM 380
L+ GA V+ + + +T LH A + V LV G++ + D G+
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT 315
Query: 381 PLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVD 437
P+ +A Q G + + LI+ GA+V A + T +A + + ++ + +
Sbjct: 316 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 193 bits (492), Expect = 1e-56
Identities = 55/342 (16%), Positives = 104/342 (30%), Gaps = 68/342 (19%)
Query: 230 EKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAI 289
EK H + +L A G++K L H + P + +
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLY--------PNPQGYGNGNDFL 76
Query: 290 VQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPL 349
+ + E+ L
Sbjct: 77 GDFNHT--------------------------------------NLQIPTEPEPESPIKL 98
Query: 350 HIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI---------PNLIRHG 400
H + + + ++ + LH N I G
Sbjct: 99 HTEAAG-SYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
A+VNA + TPL +AV + + YL++ GA + + L+ A + ++
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV 216
Query: 461 QLL---KFKANVNSSDQFGRTVLHLAVK---IQNVAILECLLVNKADINAKIISGIWK-- 512
+L K K ++ D+ G T L + VA + L+ A ++ +
Sbjct: 217 YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276
Query: 513 --GYTPLHLAVESNNEAVINKLLDYN-PDLDVKDKNGNTALH 551
G T LH A + +N ++ L+ + D +D++G T +
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM 318
Score = 191 bits (488), Expect = 5e-56
Identities = 65/318 (20%), Positives = 123/318 (38%), Gaps = 27/318 (8%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLV 61
N + Q + + +P + LH A + +
Sbjct: 51 KRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEP-EPESPIKLHTEAAGSYAIT 109
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVAS------IKTRDPTAVEILKTNRANVNIKNKEGDT 115
+ +V++ + TVLH +AS + + A+VN + + +T
Sbjct: 110 EPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 168
Query: 116 PLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRK---GADI 164
PL +A ++V L+ GA N +ALH A + +L DI
Sbjct: 169 PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228
Query: 165 NVENNFGKTAFQMAYEMKNFPAI---ELFLKYG--VNVEQCVCHENVKHGGQLLLHL-VR 218
+ G TA + + + +L ++ G V+ + ++ K+ G+ LH +
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 288
Query: 219 NGHQNAVK-LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHS 276
+ VK L+ EKG+N +D+ KT + +A + G +++V +L+ GA V+++ H+
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHT 348
Query: 277 PLHLAIEKQHIAIVQLLL 294
LA H IV +
Sbjct: 349 ARQLAQANNHHNIVDIFD 366
Score = 115 bits (290), Expect = 3e-28
Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 25/185 (13%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLL---AERGANINDPFPDDGKSCLHIAATKN-- 57
AD NK + QA + + + + +I + +G + L I A
Sbjct: 190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL-DRNGMTALMIVAHNEGR 248
Query: 58 --IRLVRLLLEYNVDVN--------AVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVN 107
+ +LL+E V+ + G T LH A+ + P ++ +N +
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKD 307
Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLR 159
++++G TP+ +AA+ G ++V LI GA E + + A +A V I R
Sbjct: 308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367
Query: 160 KGADI 164
+
Sbjct: 368 CRPER 372
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 211 bits (541), Expect = 1e-64
Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 13/283 (4%)
Query: 248 IAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKG 307
+ H H L+ G+ + S+ + + + L N + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS-- 58
Query: 308 PTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKH 367
+ +P+H + + L+ G VN+ ++ +PLH A V +L+KH
Sbjct: 59 --DWSPMHEAAIHGHQLSL--RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114
Query: 368 GADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
GA VN + PL A +G N L++HGA+V + +P+H A + ++ +
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECV 173
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
N L+ +G +D + PLY+A E + V++LL+ A+VN + + LH V+
Sbjct: 174 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRT 232
Query: 487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
+ + L+ AD AK G P+ L + A +
Sbjct: 233 ASEELACLLMDFGADTQAKNAE----GKRPVELVPPESPLAQL 271
Score = 200 bits (512), Expect = 1e-60
Identities = 68/329 (20%), Positives = 122/329 (37%), Gaps = 56/329 (17%)
Query: 119 IAARTGNYKMVRVLIDHGAHTECKNHQ-----GYNALHVA--VGILLRKGADINVENNFG 171
+ + ++ L+ G+H + + G GI L + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNP-LMGDAVSD 59
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
+ A +GHQ +++ ++ +
Sbjct: 60 WSPMHEA--------------------------------------AIHGHQLSLRNLISQ 81
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIV 290
G V+ + L A GHL V+ LL HGA V+ + H+PL A V
Sbjct: 82 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCV 141
Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
LLL+ + ++ + + P+H +R +L+ +G N++ K TPL+
Sbjct: 142 NLLLQ-HGASVQPESDLAS---PIHEAARRGHVECV--NSLIAYGGNIDHKISHLGTPLY 195
Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKY 409
+A E+Q V L++ GADVN PLH V+ + L+ GA+ A+N
Sbjct: 196 LACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAE 254
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
K P+ + + ++ L +L GA +
Sbjct: 255 GKRPVELVPPESPLAQL-FLEREGASLPK 282
Score = 200 bits (511), Expect = 2e-60
Identities = 67/364 (18%), Positives = 120/364 (32%), Gaps = 92/364 (25%)
Query: 52 IAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN 110
+ ++ + L+ + ++D + + + ++ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGP----RDFPGIRLLSNPLMGDA 56
Query: 111 KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGA 162
+P+H AA G+ +R LI G + LH A V ILL+ GA
Sbjct: 57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116
Query: 163 DINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQ 222
+N T A +G
Sbjct: 117 QVNGVTADWHTPLFNA--------------------------------------CVSGSW 138
Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLA 281
+ V L+L+ GA+V + L + + A GH++ V L+ +G +D + +PL+LA
Sbjct: 139 DCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 197
Query: 282 IEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK 341
E Q A V+ LL GA+VN +
Sbjct: 198 CENQQRACVKKLLE--------------------------------------SGADVN-Q 218
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGA 401
+PLH + + + LL+ GAD + +G+ P+ + +A L R GA
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGA 278
Query: 402 NVNA 405
++
Sbjct: 279 SLPK 282
Score = 186 bits (474), Expect = 5e-55
Identities = 69/358 (19%), Positives = 113/358 (31%), Gaps = 98/358 (27%)
Query: 27 IAKLLAERGANIN----DPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVL 82
+ L RG+++ DG I LL + +AV + +
Sbjct: 10 HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI----RLLSNPLMGDAVS--DWSPM 63
Query: 83 HTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECK 142
H A+I + + L + VNI + +PLH A G+ V++L+ HGA
Sbjct: 64 H-EAAIHGHQLS-LRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 143 NHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
+ L A V +LL+ GA + E++ + A
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEA---------------- 164
Query: 195 VNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH 254
R GH V ++ G N+ K T L +A E+
Sbjct: 165 ----------------------ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQ 202
Query: 255 LKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPL 314
V+ LL+ GA V+ + SPLH + + LL+
Sbjct: 203 RACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMD------------------- 243
Query: 315 HLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
GA+ K+ E K P+ + + A L + GA +
Sbjct: 244 -------------------FGADTQAKNAEGKRPVELVPP-ESPLAQLFLEREGASLP 281
Score = 150 bits (381), Expect = 1e-41
Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 16/198 (8%)
Query: 359 DAVSLLVKHGADVNVIDNQ-----GQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTP 413
S LV G+ + +D + G P G L+ + +A + + +P
Sbjct: 9 HHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR----LLSNPLMGDAVSDW--SP 62
Query: 414 LHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
+H A + +L L+ G V+ T PL+ A +LS V+ LLK A VN
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 474 QFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
T L A + + LL + A + + +P+H A + +N L+
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-----DLASPIHEAARRGHVECVNSLI 177
Query: 534 DYNPDLDVKDKNGNTALH 551
Y ++D K + T L+
Sbjct: 178 AYGGNIDHKISHLGTPLY 195
Score = 133 bits (336), Expect = 3e-35
Identities = 41/206 (19%), Positives = 76/206 (36%), Gaps = 15/206 (7%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
VN + ++ +A + K+L + GA +N D + L A V
Sbjct: 83 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCV 141
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
LLL++ V + + +H A+ + V L N++ K TPL++A
Sbjct: 142 NLLLQHGASVQPESD-LASPIH-EAARRGHVEC-VNSLIAYGGNIDHKISHLGTPLYLAC 198
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
V+ L++ GA + LH +L+ GAD +N GK
Sbjct: 199 ENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKR 257
Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQ 199
++ ++ A + G ++ +
Sbjct: 258 PVELVPP-ESPLAQLFLEREGASLPK 282
Score = 30.5 bits (70), Expect = 1.2
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFP 43
AD A N EG + S L GA++ P P
Sbjct: 246 ADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLPKPKP 285
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 209 bits (535), Expect = 3e-64
Identities = 66/294 (22%), Positives = 115/294 (39%), Gaps = 48/294 (16%)
Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH-SPLHLAIEKQHIAIVQLLLRRNNNNI 301
+ + A HGH + L+ G V+ + H SPLH A H++ V++LL+
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK------ 57
Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
HGA VN + TPL A S WD V
Sbjct: 58 --------------------------------HGAQVNGVTADWHTPLFNACVSGSWDCV 85
Query: 362 SLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQ 420
+LL++HGA V ++ P+H A + G+V N LI +G N++ + + TPL++A E
Sbjct: 86 NLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 144
Query: 421 KNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVL 480
+ + + LLE GA V+ + PL+ + + L+ F A+ + + G+ +
Sbjct: 145 QQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPV 203
Query: 481 HLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
L + + L + + + + + +L
Sbjct: 204 ELVP--PESPLAQLFLEREGPPSLMQLCR----LRIRKCFGIQQHHKITKLVLP 251
Score = 208 bits (531), Expect = 1e-63
Identities = 63/332 (18%), Positives = 105/332 (31%), Gaps = 88/332 (26%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADI 164
+P+H AA G+ +R LI G + LH A V ILL+ GA +
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNA 224
N T A +G +
Sbjct: 63 NGVTADWHTPLFNA--------------------------------------CVSGSWDC 84
Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIE 283
V L+L+ GA+V + L + + A GH++ V L+ +G +D + +PL+LA E
Sbjct: 85 VNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 143
Query: 284 KQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDD 343
Q A V+ LL GA+VN +
Sbjct: 144 NQQRACVKKLLE--------------------------------------SGADVN-QGK 164
Query: 344 ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANV 403
+PLH + + LL+ GAD + +G+ P+ + +A +
Sbjct: 165 GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ-LFLEREGPP 223
Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ 435
+ Q++ +L +
Sbjct: 224 SLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 202 bits (517), Expect = 2e-61
Identities = 63/272 (23%), Positives = 109/272 (40%), Gaps = 20/272 (7%)
Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
+H +GHQ +++ ++ +G V+ + L A GHL V+ LL HGA V+ +
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
H+PL A V LLL+ + ++ + + P+H +R +L
Sbjct: 67 ADWHTPLFNACVSGSWDCVNLLLQ-HGASVQPESDLAS---PIHEAARRGHVECV--NSL 120
Query: 332 LYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYV 391
+ +G N++ K TPL++A E+Q V L++ GADVN PLH +
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASE 179
Query: 392 AIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIA 450
+ L+ GA+ A+N K P+ + + + LE
Sbjct: 180 ELACLLMDFGADTQAKNAEGKRPVELVPPESPL--AQLFLEREGPPSLMQLCRLRIRKCF 237
Query: 451 VEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
+ I + +L + +LHL
Sbjct: 238 GIQQHHKITKLVLPEDLK--------QFLLHL 261
Score = 197 bits (503), Expect = 2e-59
Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 11/240 (4%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
P+H + + L+ G VN+ ++ +PLH A V +L+KHGA VN
Sbjct: 6 PMHEAAIHGHQLSL--RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
+ PL A +G N L++HGA+V + +P+H A + ++ +N L+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIA 122
Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAI 491
+G +D + PLY+A E + V++LL+ A+VN + + LH + + +
Sbjct: 123 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEEL 181
Query: 492 LECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
L+ AD AK +G P+ L + L+ +
Sbjct: 182 ACLLMDFGADTQAK----NAEGKRPVELV--PPESPLAQLFLEREGPPSLMQLCRLRIRK 235
Score = 185 bits (473), Expect = 4e-55
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 7/207 (3%)
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
+P+H A ++ L+ G VN+I PLH A G+++ L++HGA VN
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
TPL A + +N LL+HGA V + P++ A ++ V L+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLIA 122
Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN 524
+ N++ T L+LA + Q A ++ LL + AD+N +PLH +
Sbjct: 123 YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK-----GQDSPLHAVARTA 177
Query: 525 NEAVINKLLDYNPDLDVKDKNGNTALH 551
+E + L+D+ D K+ G +
Sbjct: 178 SEELACLLMDFGADTQAKNAEGKRPVE 204
Score = 169 bits (430), Expect = 6e-49
Identities = 55/278 (19%), Positives = 99/278 (35%), Gaps = 55/278 (19%)
Query: 27 IAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTV 85
+ L +G +N D S LH A + V++LL++ VN V +T L
Sbjct: 18 SLRNLISQGWAVNII-TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNA 76
Query: 86 ASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQ 145
+ D V +L + A+V ++ + +P+H AAR G+ + V LI +G + + K
Sbjct: 77 CVSGSWD--CVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISH 133
Query: 146 GYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNV 197
L++A V LL GAD+N + +
Sbjct: 134 LGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAV------------------- 173
Query: 198 EQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKI 257
R + L+++ GA+ AK+ K +++ +
Sbjct: 174 -------------------ARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP--L 212
Query: 258 VEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQLLL 294
+ L+ +Q +QH I +L+L
Sbjct: 213 AQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
Score = 160 bits (407), Expect = 1e-45
Identities = 46/273 (16%), Positives = 79/273 (28%), Gaps = 54/273 (19%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
VN + ++ +A + K+L + GA +N D + L A V
Sbjct: 27 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCV 85
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
LLL++ V + + +H A+ + V L N++ K TPL++A
Sbjct: 86 NLLLQHGASVQPESD-LASPIH-EAARRGHVEC-VNSLIAYGGNIDHKISHLGTPLYLAC 142
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
V+ L++ GA + LH +L+ GAD +N GK
Sbjct: 143 ENQQRACVKKLLESGADVNQGKG-QDSPLHAVARTASEELACLLMDFGADTQAKNAEGKR 201
Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGA 233
++ +L LE+
Sbjct: 202 PVELV--------------------------------------PPESP--LAQLFLEREG 221
Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
H KI + +L
Sbjct: 222 PPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 143 bits (363), Expect = 2e-39
Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 50/239 (20%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
A VN + T A VS LL + GA++ D S +H AA + + V
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECV 117
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
L+ Y +++ + T L+ +A + V+ L + A+VN + K D+PLH A
Sbjct: 118 NSLIAYGGNIDHKISHLGTPLY-LACENQQRAC-VKKLLESGADVN-QGKGQDSPLHAVA 174
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA------VGILLRKGADINVENNFGKTAF 175
RT + ++ +L+D GA T+ KN +G + + + L + ++
Sbjct: 175 RTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLCRLRIR 234
Query: 176 QMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGAN 234
+ H KL+L +
Sbjct: 235 KCF--------------------------------------GIQQHHKITKLVLPEDLK 255
Score = 85.6 bits (213), Expect = 6e-19
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
P++ A + + L+ VN + LH A +++ ++ LL + A +
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
N +TPL A S + +N LL + + + + + +H
Sbjct: 63 NGVTAD----WHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIH 106
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 210 bits (536), Expect = 4e-64
Identities = 81/346 (23%), Positives = 123/346 (35%), Gaps = 81/346 (23%)
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECK-NHQGYNALHVAVG--------ILLRK 160
E + L A + + +V+ L++ GA+ + G+ LH AV +LLR
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNG 220
GAD + G T F +A G
Sbjct: 62 GADPVLRKKNGATPFLLA--------------------------------------AIAG 83
Query: 221 HQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHL 280
+KL L KGA+V+ D TA A +G +K ++FL GA V+
Sbjct: 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL---------- 133
Query: 281 AIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYH-GANVN 339
R + L ++ K LL GA+VN
Sbjct: 134 ---------------RRKTKEDQERLRKGGATALMDAAEKGHVEVL--KILLDEMGADVN 176
Query: 340 VKDDENKTPLHIAI----ESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
D+ + L A+ +S LL+ HGADVNV +G+ PL +AV+ ++ +
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236
Query: 396 --LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR 439
L + +N + KT L +AVE K L + GA D
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
Score = 201 bits (515), Expect = 6e-61
Identities = 84/320 (26%), Positives = 128/320 (40%), Gaps = 61/320 (19%)
Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDS--LQFIHSPLHLAIEKQHIAIVQLLLRRNNNN 300
L AV++ + +V+ LL+ GA V+ + +PLH A++ IV+LLLR
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR----- 60
Query: 301 ININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDA 360
HGA+ ++ TP +A +
Sbjct: 61 ---------------------------------HGADPVLRKKNGATPFLLAAIAGSVKL 87
Query: 361 VSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYA--------- 410
+ L + GADVN D G A G V L + GANVN R K
Sbjct: 88 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147
Query: 411 -KTPLHIAVEQKNMSALNYLLEH-GAQVDARTQLGKDPLYIAVEM----HNLSIVEQLLK 464
T L A E+ ++ L LL+ GA V+A +G++ L A+ +I LL
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVES 523
A+VN + G+T L LAV+ +++ +++ LL + +IN G T L LAVE
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS----DGKTALLLAVEL 263
Query: 524 NNEAVINKLLDYNPDLDVKD 543
+ + L D D
Sbjct: 264 KLKKIAELLCKRGASTDCGD 283
Score = 198 bits (505), Expect = 2e-59
Identities = 79/257 (30%), Positives = 125/257 (48%), Gaps = 24/257 (9%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENK-TPLHIAIESQCWDAVSLLVKHGADV 371
L VQ + + + LL GANVN +++E TPLH A++ D V LL++HGAD
Sbjct: 8 LLIKAVQNEDVDLV--QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLL 430
+ G P +A G V + + GA+VN + Y T A + AL +L
Sbjct: 66 VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125
Query: 431 EHGAQVDARTQLGKD----------PLYIAVEMHNLSIVEQLL-KFKANVNSSDQFGRTV 479
+ GA V+ R + +D L A E ++ +++ LL + A+VN+ D GR
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185
Query: 480 LHLAVKIQNV----AILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD- 534
L A+ + AI LL + AD+N + +G TPL LAVE + ++ +LL+
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGE----RGKTPLILAVEKKHLGLVQRLLEQ 241
Query: 535 YNPDLDVKDKNGNTALH 551
+ +++ D +G TAL
Sbjct: 242 EHIEINDTDSDGKTALL 258
Score = 192 bits (491), Expect = 2e-57
Identities = 81/369 (21%), Positives = 140/369 (37%), Gaps = 95/369 (25%)
Query: 45 DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDN-LGNTVLHTVASIKTRDPTAVEILKTN 102
+ L A + LV+ LLE +VN + G T LH + D VE+L +
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED--IVELLLRH 61
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGA 162
A+ ++ K G TP +AA G+ K++++ + GA
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-------------------------GA 96
Query: 163 DINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQ 222
D+N + +G TAF A G
Sbjct: 97 DVNECDFYGFTAFMEA--------------------------------------AVYGKV 118
Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAI 282
A+K + ++GANV+ + + + E L G + L A
Sbjct: 119 KALKFLYKRGANVNLRRK-------------TKEDQERLRKGG---------ATALMDAA 156
Query: 283 EKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTT--MFKTLLYHGANVNV 340
EK H+ ++++LL + ++N + L + + + LL HGA+VNV
Sbjct: 157 EKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214
Query: 341 KDDENKTPLHIAIESQCWDAVS-LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIR 398
+ + KTPL +A+E + V LL + ++N D+ G+ L +AV+ I L +
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274
Query: 399 HGANVNARN 407
GA+ + +
Sbjct: 275 RGASTDCGD 283
Score = 185 bits (473), Expect = 8e-55
Identities = 84/375 (22%), Positives = 129/375 (34%), Gaps = 99/375 (26%)
Query: 9 NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEY 67
E L +A+ + + + L E GAN+N + G + LH A + +V LLL +
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 68 NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYK 127
D G T +A+I +++ + A+VN + G T AA G K
Sbjct: 62 GADPVLRKKNGATPFL-LAAIAGSVKL-LKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119
Query: 128 MVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAI 187
++ L GA+ + + D G TA A
Sbjct: 120 ALKFLYKRGANVNLRR---------------KTKEDQERLRKGGATALMDA--------- 155
Query: 188 ELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK-LILEKGANVHAKDQLCKTAL 246
GH +K L+ E GA+V+A D + + AL
Sbjct: 156 -----------------------------AEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Query: 247 DIAVEHGHLK----IVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNI 301
A+ I LLDHGA V+ + +PL LA+EK+H+ +VQ LL +
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ----- 241
Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
+N D + KT L +A+E +
Sbjct: 242 --------------------------------EHIEINDTDSDGKTALLLAVELKLKKIA 269
Query: 362 SLLVKHGADVNVIDN 376
LL K GA + D
Sbjct: 270 ELLCKRGASTDCGDL 284
Score = 170 bits (434), Expect = 3e-49
Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 21/227 (9%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ-GQMPLHIAVQNGYVAIPN-LIRH 399
E+ L A++++ D V L++ GA+VN + + G PLH AVQ I L+RH
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
GA+ R K TP +A ++ L L GA V+ G A + +
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 460 EQLLKFKANVNSSDQ----------FGRTVLHLAVKIQNVAILECLLVNK-ADINAKIIS 508
+ L K ANVN + G T L A + +V +L+ LL AD+NA
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN- 180
Query: 509 GIWKGYTPLHLAVESNN----EAVINKLLDYNPDLDVKDKNGNTALH 551
G L A+ S++ EA+ + LLD+ D++V+ + G T L
Sbjct: 181 ---MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224
Score = 164 bits (419), Expect = 5e-47
Identities = 78/295 (26%), Positives = 116/295 (39%), Gaps = 71/295 (24%)
Query: 3 ADVNATNKE-GITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-I 58
A+VN +E G T A+ S+ I +LL GA+ +G + +AA +
Sbjct: 29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK---KNGATPFLLAAIAGSV 85
Query: 59 RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK------- 111
+L++L L DVN D G T A++ + ++ L ANVN++ K
Sbjct: 86 KLLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVKA-LKFLYKRGANVNLRRKTKEDQER 143
Query: 112 ---EGDTPLHIAARTGNYKMVRVLIDH-GAHTECKNHQGYNALHVA------------VG 155
G T L AA G+ +++++L+D GA ++ G NAL A
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH 215
+LL GAD+NV GKT +A
Sbjct: 204 LLLDHGADVNVRGERGKTPLILA------------------------------------- 226
Query: 216 LVRNGHQNAVKLILEK-GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
V H V+ +LE+ ++ D KTAL +AVE KI E L GA D
Sbjct: 227 -VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280
Score = 124 bits (313), Expect = 3e-32
Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 24/190 (12%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN---------DPFPDDGKSCLHIA 53
ADVN + G T F +A V + K L +RGAN+N + G + L A
Sbjct: 96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 54 ATKN-IRLVRLLL-EYNVDVNAVDNLGNTVLHTVASIKTRDPTA---VEILKTNRANVNI 108
A K + ++++LL E DVNA DN+G L A + + D +L + A+VN+
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNV 214
Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDH-GAHTECKNHQGYNALHVA--------VGILLR 159
+ + G TPL +A + +V+ L++ + G AL +A +L +
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274
Query: 160 KGADINVENN 169
+GA + +
Sbjct: 275 RGASTDCGDL 284
Score = 98.7 bits (247), Expect = 3e-23
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 8/148 (5%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAK-LLAERGANINDPFPDDGKSCLHIAATKN--- 57
D K G T A + K LL E GA++N + G++ L A +
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC-DNMGRNALIHALLSSDDS 196
Query: 58 --IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDT 115
+ LLL++ DVN G T L +A K +L+ +N + +G T
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255
Query: 116 PLHIAARTGNYKMVRVLIDHGAHTECKN 143
L +A K+ +L GA T+C +
Sbjct: 256 ALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 48.6 bits (117), Expect = 2e-06
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAK-LLAERGANIN--DPFPDDGKSCLHIAATKN-I 58
ADVN + G T A+ + + LL + IN D DGK+ L +A
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD---SDGKTALLLAVELKLK 266
Query: 59 RLVRLLLEYNVDVNAVDNL 77
++ LL + + D +
Sbjct: 267 KIAELLCKRGASTDCGDLV 285
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 208 bits (532), Expect = 1e-63
Identities = 62/362 (17%), Positives = 112/362 (30%), Gaps = 85/362 (23%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADIN 165
++GDT LH+A + + L+ A ++
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSA----------------------GHEYLD 39
Query: 166 VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAV 225
++N+ G+TA +A G + V
Sbjct: 40 LQNDLGQTALHLA--------------------------------------AILGEASTV 61
Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQ 285
+ + GA V ++ TAL +A LL
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA------------- 108
Query: 286 HIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN 345
+ + T+ AP + Q N + ++ +
Sbjct: 109 ---------SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE-PRDEDWRLQLEAENYDG 158
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVID-NQGQMPLHIAVQNGYVAIPN-LIRHGANV 403
TPLH+A+ + + V LL GAD+N + G+ PLH+AV+ ++ L++ GA+
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
AR +TPL A+ + N L HGA P + + ++
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278
Query: 464 KF 465
++
Sbjct: 279 EY 280
Score = 197 bits (504), Expect = 2e-59
Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 22/275 (8%)
Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
LHLA+ QH + LL + + ++ + + LHL +T + L GA
Sbjct: 12 ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV--EKLYAAGA 69
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP--------------L 382
V V + T LH+A + +L++ + +
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 383 HIAVQNGY-VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ 441
+ N P + A N TPLH+AV K+ + L + GA ++
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189
Query: 442 -LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
G+ PL++AVE S++E LLK A+ + GRT L A+ N + L + A
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
+P + ++ ++ +Y
Sbjct: 250 PEPEDGG----DKLSPCSSSGSDSDSDNRDEGDEY 280
Score = 196 bits (500), Expect = 8e-59
Identities = 63/332 (18%), Positives = 103/332 (31%), Gaps = 77/332 (23%)
Query: 71 VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN---VNIKNKEGDTPLHIAARTGNYK 127
V G+T LH +A I +P ++ L A ++++N G T LH+AA G
Sbjct: 2 FGYVTEDGDTALH-LAVIHQHEPF-LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59
Query: 128 MVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAY 179
V L GA G+ ALH+A +LL+ + +
Sbjct: 60 TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119
Query: 180 EMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKD 239
+ N + + A++
Sbjct: 120 TPDTS------------------------HAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155
Query: 240 QLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH--SPLHLAIEKQHIAIVQLLLRRN 297
T L +AV H ++V L D GA ++ + +PLHLA+E Q ++++LLL+
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-- 213
Query: 298 NNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC 357
GA+ + +TPL A+
Sbjct: 214 ------------------------------------AGADPTARMYGGRTPLGSALLRPN 237
Query: 358 WDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG 389
LL HGA P + +
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269
Score = 189 bits (483), Expect = 2e-56
Identities = 58/258 (22%), Positives = 96/258 (37%), Gaps = 25/258 (9%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGAN---VNVKDDENKTPLHIAIESQCWDAVSLLVKHGA 369
LHL V + LL A +++++D +T LH+A V L GA
Sbjct: 12 ALHLAVIHQHEPFL--DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 370 DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARN-------------KYAKTPLH 415
V V + G LH+A + L++ + + P
Sbjct: 70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 416 IAVEQKNMS-ALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ 474
+ + + + Q++A G PL++AV + +V L A++N +
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189
Query: 475 -FGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
GRT LHLAV+ Q ++LE LL AD A++ G TPL A+ N + L
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMY----GGRTPLGSALLRPNPILARLLR 245
Query: 534 DYNPDLDVKDKNGNTALH 551
+ + +
Sbjct: 246 AHGAPEPEDGGDKLSPCS 263
Score = 133 bits (337), Expect = 2e-35
Identities = 41/286 (14%), Positives = 69/286 (24%), Gaps = 96/286 (33%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
A V + G T LH+A
Sbjct: 69 AGVLVAERGG-----------HTA-----------------------LHLACRVRAHTCA 94
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTA------------VEILKTNRANVNIK 109
+LL+ + + T A + R + +
Sbjct: 95 CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECK-NHQGYNALHVA--------VGILLRK 160
N +G TPLH+A + +MVR+L D GA G LH+A + +LL+
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRN 219
GAD G+T L +
Sbjct: 215 GADPTARMYGGRTP---------------------------------------LGSALLR 235
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHG 265
+ +L+ GA + + + ++
Sbjct: 236 PNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 116 bits (292), Expect = 3e-29
Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 13/162 (8%)
Query: 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGA---QVDARTQLGKDPLYIAVEMHNLSIV 459
+ T LH+AV ++ L++LL A +D + LG+ L++A + S V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI--------- 510
E+L A V +++ G T LHLA +++ LL +
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 511 WKGYTPLHLAVESNNEAVINKLL-DYNPDLDVKDKNGNTALH 551
+ P + + N E D+ L+ ++ +G+T LH
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163
Score = 79.9 bits (198), Expect = 8e-17
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 7/120 (5%)
Query: 436 VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKAN---VNSSDQFGRTVLHLAVKIQNVAIL 492
T+ G L++AV + ++ LL F A ++ + G+T LHLA + + +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 493 ECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHP 552
E L A + G+T LHLA LL P +
Sbjct: 62 EKLYAAGAGVLVAER----GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 208 bits (533), Expect = 2e-63
Identities = 64/315 (20%), Positives = 102/315 (32%), Gaps = 18/315 (5%)
Query: 235 VHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLL 294
+ D K + G +E + + A V LL
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60
Query: 295 RRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIE 354
+IN LH N M K L+ +GAN+N D+E PLH A
Sbjct: 61 ---ERGADINYANVDGLTALHQACIDD--NVDMVKFLVENGANINQPDNEGWIPLHAAAS 115
Query: 355 SQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLI--RHGANVNARNKYAKT 412
D L+ GA V ++++G PL IA + + R G ++ A K +
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175
Query: 413 PLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSS 472
+ Q +L + G L++A +++ L++ + +VN
Sbjct: 176 IMLRDARQ-------WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK 228
Query: 473 DQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
D G T LH A L+ N D+ A G T +A E +
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK----VGQTAFDVADEDILGYLEELQ 284
Query: 533 LDYNPDLDVKDKNGN 547
N K + +
Sbjct: 285 KKQNLLHSEKREKKS 299
Score = 208 bits (532), Expect = 3e-63
Identities = 70/379 (18%), Positives = 117/379 (30%), Gaps = 93/379 (24%)
Query: 106 VNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-------VGILL 158
+ + + + + G+ + + T+ K G L V LL
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60
Query: 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-V 217
+GADIN N G TA LH
Sbjct: 61 ERGADINYANVDGLTA---------------------------------------LHQAC 81
Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHS 276
+ + + VK ++E GAN++ D L A G+L I E+L+ GA V ++ +
Sbjct: 82 IDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141
Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
PL +A E+ ++Q + R +I
Sbjct: 142 PLDIAEEEAMEELLQNEVNRQGVDIE---------------------------------- 167
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
DA L + G LH+A GY +
Sbjct: 168 ----------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
LI+ +VN ++ TPLH A A L+E+ ++A ++G+ +A E
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277
Query: 456 LSIVEQLLKFKANVNSSDQ 474
+ E K + +
Sbjct: 278 GYLEELQKKQNLLHSEKRE 296
Score = 200 bits (510), Expect = 5e-60
Identities = 61/345 (17%), Positives = 119/345 (34%), Gaps = 54/345 (15%)
Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHLVRNGHQ 222
+ + + K Q+ + + +E + VK G + L +G
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKT-------KVKFDDGAVFLAACSSGDT 53
Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLA 281
V +LE+GA+++ + TAL A ++ +V+FL+++GA ++ PLH A
Sbjct: 54 EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA 113
Query: 282 IEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK 341
++ I + L+ GA+V
Sbjct: 114 ASCGYLDIAEYLIS--------------------------------------QGAHVGAV 135
Query: 342 DDENKTPLHIAIESQCWDAVSLLV-KHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHG 400
+ E TPL IA E + + V + G D+ + + + + L
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ------WLNSGH 189
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
N K T LH+A + L L++ V+ + G PL+ A
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
L++ ++ + ++ G+T +A + + E + K
Sbjct: 250 ILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEK 294
Score = 181 bits (462), Expect = 4e-53
Identities = 55/345 (15%), Positives = 107/345 (31%), Gaps = 66/345 (19%)
Query: 45 DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
K + + + + G L A V L
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA--ACSSGDTEE-VLRLLERG 63
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A++N N +G T LH A N MV+ L+++GA+ +++G+ LH A
Sbjct: 64 ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFL-KYGVNVEQCVCHENVKHGGQLLL 214
L+ +GA + N+ G T +A E ++ + + GV++E
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA-------------R 170
Query: 215 HL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-Q 272
R ++A + + N + TAL +A G+ ++++ L+ V+
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230
Query: 273 FIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLL 332
+PLH A ++L+
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVE------------------------------------- 253
Query: 333 YHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ 377
+ ++ + +T +A E L K + +
Sbjct: 254 -NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297
Score = 176 bits (448), Expect = 4e-51
Identities = 58/253 (22%), Positives = 97/253 (38%), Gaps = 20/253 (7%)
Query: 303 INTKGPTNKAPLHLVVQRKSWN--TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDA 360
+ K L K W T + + VK D+ A S +
Sbjct: 1 MKMADAKQKRNEQL----KRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEE 55
Query: 361 VSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVE 419
V L++ GAD+N + G LH A + V + L+ +GAN+N + PLH A
Sbjct: 56 VLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115
Query: 420 QKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL-KFKANVNSSDQFGRT 478
+ YL+ GA V A G PL IA E +++ + + ++ ++ +
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175
Query: 479 VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPD 538
++ + + L + SG T LH+A V+ L+ D
Sbjct: 176 IMLRDAR-------QWLNSGHINDVRHAKSG----GTALHVAAAKGYTEVLKLLIQARYD 224
Query: 539 LDVKDKNGNTALH 551
+++KD +G T LH
Sbjct: 225 VNIKDYDGWTPLH 237
Score = 146 bits (371), Expect = 4e-40
Identities = 56/276 (20%), Positives = 99/276 (35%), Gaps = 62/276 (22%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
AD+N N +G+T QA + + K L E GANIN D ++G LH AA+ +
Sbjct: 64 ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD---NEGWIPLHAAASCGYLD 120
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
+ L+ V AV++ G+T L + ++ VN + + +
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE--LLQNE------VNRQGVDIEAARKE 172
Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
R + L + G ALHVA + +L++ D+N+++ G
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG 232
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILE 230
T LH G + A ++++E
Sbjct: 233 WTP---------------------------------------LHAAAHWGKEEACRILVE 253
Query: 231 KGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
++ A +++ +TA D+A E + E
Sbjct: 254 NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 193 bits (494), Expect = 2e-58
Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 8/241 (3%)
Query: 300 NININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWD 359
++N + ++PLH + + L+ GAN++ ++ +TPL A E+ +
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDIC--HMLVQAGANIDTCSEDQRTPLMEAAENNHLE 58
Query: 360 AVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIA 417
AV L+K GA V+ D +G LH+A + G+ + L+ +G +VN ++ TP+ A
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 418 VEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGR 477
E K++ + LL G+ ++ R L+ A + I E LL K ++++ + G
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD 178
Query: 478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537
+ LH+A + + L +D+ K +G TPL A ++ ++
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNK----EGETPLQCASLNSQVWSALQMSKALQ 234
Query: 538 D 538
D
Sbjct: 235 D 235
Score = 193 bits (494), Expect = 2e-58
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 6/218 (2%)
Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
N ++ ++PLH A E+ D +LV+ GA+++ + PL A +N ++
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 396 -LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ-VDARTQLGKDPLYIAVEM 453
LI+ GA V+ ++ T LH+A ++ + + YLL +G V+ + G P+ A E
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKG 513
++ +V+ LL +++N D LH A V I E LL K D++A I G
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI----HG 177
Query: 514 YTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+PLH+A N + L + D+ +K+K G T L
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ 215
Score = 184 bits (471), Expect = 3e-55
Identities = 64/272 (23%), Positives = 103/272 (37%), Gaps = 41/272 (15%)
Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQ 291
N + Q ++ L A E GH+ I L+ GA +D+ + +PL A E H+ V+
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 292 LLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHI 351
L++ GA V+ KD E T LH+
Sbjct: 62 YLIK--------------------------------------AGALVDPKDAEGSTCLHL 83
Query: 352 AIESQCWDAVSLLVKHGA-DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKY 409
A + ++ V L+ +G DVN D+ G P+ A + +V + L+ G+++N R+
Sbjct: 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
LH A + LL + A G PL+IA + V L ++V
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
++ G T L A V + D
Sbjct: 204 TLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 173 bits (442), Expect = 7e-51
Identities = 62/313 (19%), Positives = 105/313 (33%), Gaps = 88/313 (28%)
Query: 68 NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYK 127
+++ + LH A+ +L AN++ +++ TPL AA + +
Sbjct: 1 HMNFKMEHQNKRSPLH-AAAEAGHVDI-CHMLVQAGANIDTCSEDQRTPLMEAAENNHLE 58
Query: 128 MVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGA-DINVENNFGKTAFQMA 178
V+ LI GA + K+ +G LH+A V LL G D+N +++ G T A
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 179 YEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAK 238
H + VKL+L KG++++ +
Sbjct: 119 --------------------------------------TEYKHVDLVKLLLSKGSDINIR 140
Query: 239 DQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRN 297
D L A G + I E LL + ++ SPLH+A + V L L
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-- 198
Query: 298 NNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQC 357
++V +K+ E +TPL A +
Sbjct: 199 ------------------------------------RDSDVTLKNKEGETPLQCASLNSQ 222
Query: 358 WDAVSLLVKHGAD 370
+ + K D
Sbjct: 223 VWSALQMSKALQD 235
Score = 163 bits (415), Expect = 5e-47
Identities = 52/274 (18%), Positives = 101/274 (36%), Gaps = 51/274 (18%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
+ ++ + A + I +L + GANI+ +D ++ L AA N + V
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAV 60
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+ L++ V+ D G+T LH +A+ K +L + +VN ++ G TP+ A
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLH-LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
+ +V++L+ G+ ++++ LH A ILL D++ N G +
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS 179
Query: 174 AFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKG 232
LH+ R + V L L +
Sbjct: 180 P---------------------------------------LHIAARENRYDCVVLFLSRD 200
Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
++V K++ +T L A + + +
Sbjct: 201 SDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 142 bits (361), Expect = 2e-39
Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 13/204 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
A+++ +++ T +A ++ K L + GA ++ +G +CLH+AA K +V
Sbjct: 35 ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHLAAKKGHYEVV 93
Query: 62 RLLLEYN-VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
+ LL +DVN D+ G T + A+ V++L + +++NI++ E + LH A
Sbjct: 94 QYLLSNGQMDVNCQDDGGWTPMI-WATEYKHVDL-VKLLLSKGSDINIRDNEENICLHWA 151
Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGK 172
A +G + +L+ N G + LH+A V + L + +D+ ++N G+
Sbjct: 152 AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE 211
Query: 173 TAFQMAYEMKNFPAIELFLKYGVN 196
T Q A + K +
Sbjct: 212 TPLQCASLNSQVWSALQMSKALQD 235
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 193 bits (492), Expect = 4e-58
Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 18/252 (7%)
Query: 301 ININTKGPTNKAPLHLVVQRKSWNTTMF-----------KTLLYHGANV-NVKDDENKTP 348
+++N +GP PL + T +Y GA++ N D +T
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 349 LHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGA-NVNAR 406
LH+A DA L++ AD N+ DN G+ PLH AV + LIR+ A +++AR
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFK 466
TPL +A L L+ A V+A LGK L+ A ++N+ LLK
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 467 ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
AN + + T L LA + + + LL + A+ + P +A E +
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH----MDRLPRDIAQERMHH 236
Query: 527 AVINKLLDYNPD 538
++ L +
Sbjct: 237 DIVRLLDLEHHH 248
Score = 186 bits (476), Expect = 1e-55
Identities = 60/275 (21%), Positives = 110/275 (40%), Gaps = 27/275 (9%)
Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLL 293
+V+ + T L IA G + E+ A++
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGL-------------------ETGNSEEEEDAPAVISDF 42
Query: 294 LRRNNNNINI-NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
+ ++ N T + LHL + + K LL A+ N++D+ +TPLH A
Sbjct: 43 I---YQGASLHNQTDRTGETALHLAARYSRSDAA--KRLLEASADANIQDNMGRTPLHAA 97
Query: 353 IESQCWDAVSLLVKHGA-DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYA 410
+ + +L+++ A D++ + G PL +A + + LI A+VNA +
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157
Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
K+ LH A N+ A LL++GA D + + PL++A + + LL AN +
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 217
Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
+D R +A + + I+ L + +
Sbjct: 218 ITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
Score = 186 bits (475), Expect = 2e-55
Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 20/231 (8%)
Query: 337 NVNVKDDENKTPLHIA-------------IESQCWDAVSLLVKHGADV-NVIDNQGQMPL 382
+VNV+ + TPL IA E +S + GA + N D G+ L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 383 HIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ-VDART 440
H+A + L+ A+ N ++ +TPLH AV L+ + A +DAR
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 441 QLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
G PL +A + ++E L+ A+VN+ D G++ LH A + NV LL N A
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181
Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+ + + + TPL LA + LLD+ + D+ D
Sbjct: 182 NKDMQNN----REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 228
Score = 181 bits (462), Expect = 1e-53
Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 61/308 (19%)
Query: 105 NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADI 164
+VN++ +G TPL IA+ +G + + + +GA +
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAV------------ISDFIYQGASL 49
Query: 165 -NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQ 222
N + G+TA LHL R
Sbjct: 50 HNQTDRTGETA---------------------------------------LHLAARYSRS 70
Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH--SPLHL 280
+A K +LE A+ + +D + +T L AV + + L+ + A + +PL L
Sbjct: 71 DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 130
Query: 281 AIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNV 340
A +++ L+ N++ ++N K+ LH + + LL +GAN ++
Sbjct: 131 AARLAVEGMLEDLI---NSHADVNAVDDLGKSALHWAAAVNNVDAA--VVLLKNGANKDM 185
Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRH 399
+++ +TPL +A ++ +L+ H A+ ++ D+ ++P IA + + I L
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245
Query: 400 GANVNARN 407
+ + +
Sbjct: 246 HHHHHHHH 253
Score = 169 bits (430), Expect = 5e-49
Identities = 69/287 (24%), Positives = 107/287 (37%), Gaps = 65/287 (22%)
Query: 4 DVNATNKEGIT-------------LFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCL 50
DVN +G T + +GA++++ G++ L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 51 HIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRA-NVNI 108
H+AA + + LLE + D N DN+G T LH S + +IL NRA +++
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG--VFQILIRNRATDLDA 119
Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRK 160
+ +G TPL +AAR M+ LI+ A + G +ALH A +LL+
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRN 219
GA+ +++NN +T L L R
Sbjct: 180 GANKDMQNNREETP---------------------------------------LFLAARE 200
Query: 220 GHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
G K++L+ AN D + + DIA E H IV L
Sbjct: 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247
Score = 168 bits (427), Expect = 2e-48
Identities = 68/327 (20%), Positives = 108/327 (33%), Gaps = 100/327 (30%)
Query: 69 VDVNAVDNLGNTVLHTVASIKTRDPTA------------VEILKTNRANV-NIKNKEGDT 115
+DVN G T L +AS + A++ N ++ G+T
Sbjct: 1 MDVNVRGPDGFTPLM-IASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 59
Query: 116 PLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGA-DINV 166
LH+AAR + L++ A +++ G LH AV IL+R A D++
Sbjct: 60 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAV 225
+ G T L L R + +
Sbjct: 120 RMHDGTTP---------------------------------------LILAARLAVEGML 140
Query: 226 KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQ 285
+ ++ A+V+A D L K+AL A ++ LL +GA
Sbjct: 141 EDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA------------------- 181
Query: 286 HIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDEN 345
N + + + PL L + S+ T K LL H AN ++ D +
Sbjct: 182 ----------------NKDMQNNREETPLFLAAREGSYETA--KVLLDHFANRDITDHMD 223
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVN 372
+ P IA E D V LL +
Sbjct: 224 RLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 124 bits (313), Expect = 2e-32
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 11/175 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
AD N + G T A+ + + ++L A D DG + L +AA ++
Sbjct: 81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
L+ + DVNAVD+LG + LH A++ D A +L N AN +++N +TPL +AA
Sbjct: 141 EDLINSHADVNAVDDLGKSALHWAAAVNNVD--AAVVLLKNGANKDMQNNREETPLFLAA 198
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVEN 168
R G+Y+ +VL+DH A+ + +H +A V +L + + +
Sbjct: 199 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 191 bits (489), Expect = 5e-58
Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Query: 329 KTLLYHGANV-NVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ 387
+Y GA++ N D +T LH+A DA L++ AD N+ DN G+ PLH AV
Sbjct: 8 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 67
Query: 388 NGYVAIPN-LIRHGA-NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD 445
+ LIR+ A +++AR TPL +A L L+ A V+A LGK
Sbjct: 68 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 127
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
L+ A ++N+ LLK AN + + T L LA + + + LL + A+ +
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 187
Query: 506 IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
P +A E + ++ L +YN + LH
Sbjct: 188 DH----MDRLPRDIAQERMHHDIVRLLDEYN-------LVRSPQLH 222
Score = 185 bits (472), Expect = 2e-55
Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 7/220 (3%)
Query: 220 GHQNAVKLILEKGANVH-AKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSP 277
+ + +GA++H D+ +TAL +A + + LL+ A + +P
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 278 LHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN 337
LH A+ + Q+L+R N +++ + PL L + + L+ A+
Sbjct: 62 LHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGML--EDLINSHAD 117
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-L 396
VN DD K+ LH A DA +L+K+GA+ ++ +N+ + PL +A + G L
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
+ H AN + + + P IA E+ + + L E+
Sbjct: 178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217
Score = 174 bits (444), Expect = 2e-51
Identities = 52/258 (20%), Positives = 97/258 (37%), Gaps = 42/258 (16%)
Query: 253 GHLKIVEFLLDHGACVDSLQFIH--SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTN 310
++ + GA + + + LHLA + LL
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE--------------- 46
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGA- 369
A+ N++D+ +TPLH A+ + +L+++ A
Sbjct: 47 -----------------------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 370 DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNY 428
D++ + G PL +A + + LI A+VNA + K+ LH A N+ A
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 143
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
LL++GA D + + PL++A + + LL AN + +D R +A + +
Sbjct: 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203
Query: 489 VAILECLLVNKADINAKI 506
I+ L + ++
Sbjct: 204 HDIVRLLDEYNLVRSPQL 221
Score = 167 bits (427), Expect = 6e-49
Identities = 64/251 (25%), Positives = 103/251 (41%), Gaps = 52/251 (20%)
Query: 27 IAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTV 85
+ +GA++++ G++ LH+AA + + LLE + D N DN+G T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 86 ASIKTRDPTAVEILKTNRA-NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
S + +IL NRA +++ + +G TPL +AAR M+ LI+ A +
Sbjct: 66 VSADAQG--VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 123
Query: 145 QGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVN 196
G +ALH A +LL+ GA+ +++NN +T
Sbjct: 124 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP---------------------- 161
Query: 197 VEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHL 255
L L R G K++L+ AN D + + DIA E H
Sbjct: 162 -----------------LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 204
Query: 256 KIVEFLLDHGA 266
IV L ++
Sbjct: 205 DIVRLLDEYNL 215
Score = 123 bits (312), Expect = 1e-32
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 11/172 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
AD N + G T A+ + + ++L A D DG + L +AA ++
Sbjct: 49 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 108
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
L+ + DVNAVD+LG + LH A++ D A +L N AN +++N +TPL +AA
Sbjct: 109 EDLINSHADVNAVDDLGKSALHWAAAVNNVD--AAVVLLKNGANKDMQNNREETPLFLAA 166
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADIN 165
R G+Y+ +VL+DH A+ + +H +A V +L +
Sbjct: 167 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 190 bits (485), Expect = 4e-57
Identities = 62/224 (27%), Positives = 117/224 (52%), Gaps = 14/224 (6%)
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLV----KHGADVNVIDNQGQMPLHIAVQNGYVAI 393
D++ TPLHIA+ AV LV + G ++++ +N Q PLH+AV ++
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 394 PN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ----VDARTQLGKDPLY 448
L+ GA+ A +++ +T H+A E ++ + L LL+ A ++AR G L+
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 449 IAVEMHNLSIVEQLLKFKANVNSSD-QFGRTVLHLAVKIQNVAILECLLVNKADINAKII 507
+AV V+ LL+ A++++ D + GR+ L AV+ ++++++ LL + A++NA++
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181
Query: 508 SGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
SG + LH A ++ L+ D +K+ + +T L
Sbjct: 182 SG----SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221
Score = 188 bits (480), Expect = 2e-56
Identities = 67/265 (25%), Positives = 111/265 (41%), Gaps = 44/265 (16%)
Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
PLH+A+ + ++ V L+ G
Sbjct: 12 PLHIAVVQGNLPAVHRLVNL----------------------------------FQQGGR 37
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
+++ ++ +TPLH+A+ + V LLV GA +D GQ H+A ++
Sbjct: 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97
Query: 396 LIRHGA----NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR-TQLGKDPLYIA 450
L+ A ++ ARN T LH+AV + + LLE GA +DA + G+ PL A
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157
Query: 451 VEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
VE ++LS+V+ LL+ ANVN+ G + LH A + ++ L+ + AD + K
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC--- 214
Query: 511 WKGYTPLHLAVESNNEAVINKLLDY 535
TPL +A ++
Sbjct: 215 -HNDTPLMVARSRRVIDILRGKATR 238
Score = 179 bits (457), Expect = 5e-53
Identities = 61/267 (22%), Positives = 110/267 (41%), Gaps = 50/267 (18%)
Query: 214 LHL-VRNGHQNAVKLILE----KGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268
LH+ V G+ AV ++ G + + L +T L +AV +V L+ GA
Sbjct: 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 269 DSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTM 327
+L + + HLA E + ++ LL
Sbjct: 73 MALDRHGQTAAHLACEHRSPTCLRALLD-------------------------------- 100
Query: 328 FKTLLYHGA----NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID-NQGQMPL 382
A ++ ++ + T LH+A+ ++C + V LL++ GAD++ +D G+ PL
Sbjct: 101 ------SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
Query: 383 HIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ 441
AV+N +++ L++HGANVNA+ + LH A + + + L+ GA +
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214
Query: 442 LGKDPLYIAVEMHNLSIVEQLLKFKAN 468
PL +A + I+ A+
Sbjct: 215 HNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 170 bits (433), Expect = 1e-49
Identities = 73/316 (23%), Positives = 115/316 (36%), Gaps = 94/316 (29%)
Query: 71 VNAVDNLGNTVLHTVASIKTRDPTA---VEILKTNRANVNIKNKEGDTPLHIAARTGNYK 127
D G+T LH +A ++ P V + + ++I N TPLH+A T
Sbjct: 2 ATRADEDGDTPLH-IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 128 MVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGA----DINVENNFGKTAF 175
+VR+L+ GA + G A H+A + LL A D+ N G TA
Sbjct: 61 VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 176 QMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANV 235
+A V Q V+L+LE+GA++
Sbjct: 121 HVA--------------------------------------VNTECQETVQLLLERGADI 142
Query: 236 HAKD-QLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLL 293
A D + ++ L AVE+ L +V+ LL HGA V++ S LH A + + +V+ L
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202
Query: 294 LRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAI 353
+R GA+ ++K+ N TPL +A
Sbjct: 203 VR--------------------------------------SGADSSLKNCHNDTPLMVAR 224
Query: 354 ESQCWDAVSLLVKHGA 369
+ D + A
Sbjct: 225 SRRVIDILRGKATRPA 240
Score = 159 bits (405), Expect = 1e-45
Identities = 56/283 (19%), Positives = 101/283 (35%), Gaps = 65/283 (22%)
Query: 5 VNATNKEGITLFQQAIVSSQTPIAKLLAER----GANIN--DPFPDDGKSCLHIAATKN- 57
+++G T A+V P L G ++ + + ++ LH+A
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN---NLRQTPLHLAVITTL 58
Query: 58 IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRA----NVNIKNKEG 113
+VRLL+ A+D G T H +A + L + A ++ +N +G
Sbjct: 59 PSVVRLLVTAGASPMALDRHGQTAAH-LACEHRSPTC-LRALLDSAAPGTLDLEARNYDG 116
Query: 114 DTPLHIAARTGNYKMVRVLIDHGAHTECKNHQ-GYNALHVA--------VGILLRKGADI 164
T LH+A T + V++L++ GA + + + G + L A V +LL+ GA++
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQN 223
N + G +A LH G
Sbjct: 177 NAQMYSGSSA---------------------------------------LHSASGRGLLP 197
Query: 224 AVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
V+ ++ GA+ K+ T L +A + I+ A
Sbjct: 198 LVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 139 bits (354), Expect = 2e-38
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 21/210 (10%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
+++ N T A++++ + +LL GA+ D G++ H+A
Sbjct: 37 RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD---RHGQTAAHLACEHRSPT 93
Query: 60 LVRLLLEY----NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN-KEGD 114
+R LL+ +D+ A + G T LH VA T V++L A+++ + K G
Sbjct: 94 CLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQET-VQLLLERGADIDAVDIKSGR 151
Query: 115 TPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINV 166
+PL A + MV++L+ HGA+ + + G +ALH A V L+R GAD ++
Sbjct: 152 SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211
Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVN 196
+N T +A + + +
Sbjct: 212 KNCHNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 114 bits (287), Expect = 5e-29
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRL 60
D+ A N +G+T A+ + +LL ERGA+I+ G+S L A N + +
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM 165
Query: 61 VRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
V+LLL++ +VNA G++ LH AS + P V L + A+ ++KN DTPL +A
Sbjct: 166 VQLLLQHGANVNAQMYSGSSALH-SASGRGLLPL-VRTLVRSGADSSLKNCHNDTPLMVA 223
Query: 121 ARTGNYKMVRVLIDHGA 137
++R A
Sbjct: 224 RSRRVIDILRGKATRPA 240
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 189 bits (483), Expect = 7e-57
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 6/218 (2%)
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
++ DD + + A + ++ LV+ G DV D + LH A N + +
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 396 LIRHGANVNAR-NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
I GA V+ TPLH A Q ++S + L+++GA G +++A +
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG 120
Query: 455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAV-KIQNVAILECLLVNKADINAKIISGIWKG 513
+ SIV L+ +V+ DQ G T L A + +V LL +N +
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG---DKYHK 177
Query: 514 YTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
T LH AV + N VI+ LL+ ++D ++ G +AL
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALD 215
Score = 188 bits (480), Expect = 2e-56
Identities = 63/263 (23%), Positives = 112/263 (42%), Gaps = 44/263 (16%)
Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
+ + G + ++E G +V D+ T L A + + +V++ + GA VD L
Sbjct: 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72
Query: 272 -QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKT 330
+PLH A + H+++V L++
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMK----------------------------------- 97
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
+GA+ ++ D E + +H+A + V+ L+ G DV+++D G PL A +
Sbjct: 98 ---YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154
Query: 391 VAIP--NLIRHGANVNARNKYAK-TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPL 447
P L+ +VN +KY K T LH AV N + ++ LLE GA VDA+ G+ L
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Query: 448 YIAVEMHNLSIVEQLLKFKANVN 470
+A + N+ ++ L + +
Sbjct: 215 DLAKQRKNVWMINHLQEARQAKG 237
Score = 186 bits (476), Expect = 9e-56
Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 10/246 (4%)
Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
++ + + Q + + L+ G +V D EN T LH A + D V
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERC--RELVEAGYDVRQPDKENVTLLHWAAINNRIDLV 58
Query: 362 SLLVKHGADVNVIDN-QGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVE 419
+ GA V+ + PLH A + G++++ L+++GA+ + + + +H+A +
Sbjct: 59 KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 420 QKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEM-HNLSIVEQLLKFKANVNSSDQF-GR 477
+ S + YL+ G VD Q G PL A H++ LL F +VN D++
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178
Query: 478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNP 537
T LH AV N ++ LL A+++A+ I KG + L LA + N +IN L +
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNI----KGESALDLAKQRKNVWMINHLQEARQ 234
Query: 538 DLDVKD 543
+
Sbjct: 235 AKGYDN 240
Score = 185 bits (473), Expect = 2e-55
Identities = 63/277 (22%), Positives = 110/277 (39%), Gaps = 43/277 (15%)
Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQL 292
++ D + A ++G + L++ G V + + LH A I +V+
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 293 LLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKD-DENKTPLHI 351
+ GA V+ D N TPLH
Sbjct: 61 YIS--------------------------------------KGAIVDQLGGDLNSTPLHW 82
Query: 352 AIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYA 410
A V L+K+GAD ++ID +G +H+A Q G+ +I LI G +V+ ++
Sbjct: 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Query: 411 KTPLHIAVEQKN-MSALNYLLEHGAQVDARTQLGKD-PLYIAVEMHNLSIVEQLLKFKAN 468
TPL A + + + LL V+ + K+ L+ AV N +++ LL+ AN
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202
Query: 469 VNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
V++ + G + L LA + +NV ++ L +
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
Score = 180 bits (460), Expect = 2e-53
Identities = 61/316 (19%), Positives = 106/316 (33%), Gaps = 89/316 (28%)
Query: 105 NVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGI 156
++ + + A + G Y+ R L++ G + + LH A V
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 157 LLRKGADIN-VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLH 215
+ KGA ++ + + T A
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWA------------------------------------- 83
Query: 216 LVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFI 274
R GH + V +++ GA+ D + + +A + GH IV +L+ G VD + Q
Sbjct: 84 -TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Query: 275 HSPLHLAIEKQHIA-IVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLY 333
+PL A + H +LLL
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLT-------------------------------------- 164
Query: 334 HGANVNVKDDENK-TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVA 392
+VN+ D +K T LH A+ + +SLL++ GA+V+ + +G+ L +A Q V
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVW 224
Query: 393 IPN-LIRHGANVNARN 407
+ N L N
Sbjct: 225 MINHLQEARQAKGYDN 240
Score = 172 bits (439), Expect = 2e-50
Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 20/242 (8%)
Query: 37 NINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTA 95
++ D + A R L+E DV D T+LH A+I R
Sbjct: 1 HMTHI-DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLH-WAAINNRIDL- 57
Query: 96 VEILKTNRANVNIKNKE-GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA- 153
V+ + A V+ + TPLH A R G+ MV L+ +GA + +G + +H+A
Sbjct: 58 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 117
Query: 154 -------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAI-ELFLKYGVNVEQCVCHEN 205
V L+ KG D+++ + G T A + L L + V+V
Sbjct: 118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN-----LG 172
Query: 206 VKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
K+ LH V G+ + L+LE GANV A++ ++ALD+A + ++ ++ L +
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
Query: 265 GA 266
Sbjct: 233 RQ 234
Score = 143 bits (364), Expect = 9e-40
Identities = 48/207 (23%), Positives = 90/207 (43%), Gaps = 13/207 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
DV +KE +TL A ++++ + K +GA ++ D + LH A + + +V
Sbjct: 33 YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV 92
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
L++Y D + +D G + +H +A+ V L +V++ ++ G TPL AA
Sbjct: 93 VQLMKYGADPSLIDGEGCSCIH-LAAQFGHTSI-VAYLIAKGQDVDMMDQNGMTPLMWAA 150
Query: 122 RTGNYK-MVRVLIDHGAHTECK-NHQGYNALHVA--------VGILLRKGADINVENNFG 171
+ R+L+ + ALH A + +LL GA+++ +N G
Sbjct: 151 YRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKG 210
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVE 198
++A +A + KN I +
Sbjct: 211 ESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 107 bits (271), Expect = 7e-27
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRL 60
AD + + EG + A T I L +G +++ D +G + L AA + +
Sbjct: 100 ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD---QNGMTPLMWAAYRTHSV 156
Query: 61 --VRLLLEYNVDVNAVDNL-GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPL 117
RLLL +NV VN D NT LH A + + T + +L ANV+ +N +G++ L
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALH-WAVLA-GNTTVISLLLEAGANVDAQNIKGESAL 214
Query: 118 HIAARTGNYKMVRVLIDHGAHTECKN 143
+A + N M+ L + N
Sbjct: 215 DLAKQRKNVWMINHLQEARQAKGYDN 240
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 190 bits (484), Expect = 2e-56
Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 55/325 (16%)
Query: 214 LHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF 273
L + +K L + D +A A+ ++++V LL+ GA +
Sbjct: 4 LSRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-LE 61
Query: 274 IHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLY 333
PLH A + IV++LL
Sbjct: 62 NEFPLHQAATLEDTKIVKILLF-------------------------------------- 83
Query: 334 HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQM-PLHIAVQNGYVA 392
G + + DD+ T L+ A++S V L VK + G + AV V+
Sbjct: 84 SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS 143
Query: 393 IPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP-LYIA 450
I + + + + +HI ++ ++ + LL++ + L P + +A
Sbjct: 144 IVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLA 202
Query: 451 VEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGI 510
++ ++ +++ L K+ N+ + V + + I + ++ + + +
Sbjct: 203 IDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTK- 254
Query: 511 WKGYTPLHLAVESNNEAVINKLLDY 535
+ + + NK L
Sbjct: 255 ---DLDIVKNNKLDEIISKNKELRL 276
Score = 188 bits (479), Expect = 9e-56
Identities = 41/275 (14%), Positives = 102/275 (37%), Gaps = 23/275 (8%)
Query: 280 LAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVN 339
I ++ L ++ + + + + + TLL GA N
Sbjct: 5 SRINTWKSKQLKSFL----SSKDTFKADVHGHSASYYAIADNNVRLV--CTLLNAGALKN 58
Query: 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIR 398
+ + N+ PLH A + V +L+ G D + D++G L+ AV +G + ++
Sbjct: 59 LLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116
Query: 399 HGANVNARNKY-AKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLS 457
+ K KT + AV ++S ++Y L ++I ++ ++
Sbjct: 117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-LLSCIHITIKNGHVD 175
Query: 458 IVEQLLKFKANVNSSDQFGRT-VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTP 516
++ LL + + N+++ + LA+ +++ +L+ L +I +
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-----------SA 224
Query: 517 LHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
V ++ + +++ + + + +
Sbjct: 225 NLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259
Score = 178 bits (453), Expect = 6e-52
Identities = 40/298 (13%), Positives = 90/298 (30%), Gaps = 29/298 (9%)
Query: 146 GYNALHVAVG-----ILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQC 200
G + + D + G +A A N + L G
Sbjct: 1 GMDLSRINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK--- 57
Query: 201 VCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEF 260
N+ L VK++L G + D TAL AV+ G+++ V+
Sbjct: 58 ----NLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKL 113
Query: 261 LLDHGACVDSL--QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVV 318
+ + + + A+ ++IV L + ++ + +H+ +
Sbjct: 114 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA-ILLS---CIHITI 169
Query: 319 QRKSWNTTMFKTLLYHGANVNVKDDENKTP-LHIAIESQCWDAVSLLVKHGADVNVIDNQ 377
+ + LL + + N + P + +AI+++ + + L K+ ++
Sbjct: 170 KNGHVDMM--ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS---- 223
Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
V I +I + + + + + + N L
Sbjct: 224 ---ANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMY 278
Score = 176 bits (450), Expect = 2e-51
Identities = 54/335 (16%), Positives = 105/335 (31%), Gaps = 63/335 (18%)
Query: 84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN 143
++ I T ++ + + + G + + A N ++V L++ GA
Sbjct: 3 DLSRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE 61
Query: 144 HQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGV 195
LH A V ILL G D + ++ G TA A
Sbjct: 62 --NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA----------------- 102
Query: 196 NVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQL-CKTALDIAVEHGH 254
V +G+ VKL ++K + + KT+ AV
Sbjct: 103 ---------------------VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141
Query: 255 LKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAP- 313
+ IV + L L + S +H+ I+ H+ ++ LLL + + NT P
Sbjct: 142 VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL---DYMTSTNTNNSLLFIPD 198
Query: 314 LHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV 373
+ L + K + L + N+ + + + ++++ +
Sbjct: 199 IKLAIDNKDIEML--QALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKS 249
Query: 374 IDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNK 408
+ + + + N VN K
Sbjct: 250 DSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVKK 284
Score = 158 bits (403), Expect = 9e-45
Identities = 47/312 (15%), Positives = 91/312 (29%), Gaps = 63/312 (20%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
D + G + AI + + L GA N + + LH AAT ++V
Sbjct: 22 KDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL---LENEFPLHQAATLEDTKIV 78
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEG-DTPLHIA 120
++LL +D + D+ GNT L+ A T V++ + K G T + A
Sbjct: 79 KILLFSGLDDSQFDDKGNTALY-YAVDSGNMQT-VKLFVKKNWRLMFYGKTGWKTSFYHA 136
Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGK 172
+ +V + T + +H+ + +LL N N+
Sbjct: 137 VMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF 195
Query: 173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEK 231
+ L + N ++ + +
Sbjct: 196 IP--------------------------------------DIKLAIDNKDIEMLQALFKY 217
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIV 290
N++ +A V +I + +++ S + + + I
Sbjct: 218 DINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISK 270
Query: 291 QLLLRRNNNNIN 302
LR N
Sbjct: 271 NKELRLMYVNCV 282
Score = 153 bits (390), Expect = 6e-43
Identities = 45/355 (12%), Positives = 103/355 (29%), Gaps = 108/355 (30%)
Query: 12 GITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRLLLEYN 68
G+ L I + ++ K + D G S + A N +RLV LL
Sbjct: 1 GMDL--SRINTWKSKQLKSFL-SSKDTFKAD---VHGHSASYYAIADNNVRLVCTLLNAG 54
Query: 69 VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKM 128
N ++N LH A+ V+IL + + + + +G+T L+ A +GN +
Sbjct: 55 ALKNLLEN--EFPLH-QAATLEDTKI-VKILLFSGLDDSQFDDKGNTALYYAVDSGNMQT 110
Query: 129 VRVLIDHGAHTECKNHQGYN-ALHVA--------VGILLRKGADINVENNFGKTAFQMAY 179
V++ + G+ + + A V L + + +
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAILLSC----- 164
Query: 180 EMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAK 238
+H+ ++NGH + + L+L+ + +
Sbjct: 165 ----------------------------------IHITIKNGHVDMMILLLDYMTSTNTN 190
Query: 239 DQLCKT-ALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRN 297
+ L + +A+++ +++++ L + I+S + I ++++
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFKYDIN------IYSANLENVLLDDAEIAKMIIE-- 242
Query: 298 NNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
+
Sbjct: 243 ------------------------------------KHVEYKSDSYTKDLDIVKN 261
Score = 31.7 bits (73), Expect = 0.47
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 513 GYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
G + ++ + K + D D +G++A +
Sbjct: 1 GMDLSRIN-TWKSKQL--KSFLSSKDTFKADVHGHSASY 36
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 182 bits (465), Expect = 2e-54
Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 14/224 (6%)
Query: 313 PLHLVVQRKSWNTTMF--KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
LHL + + TM + + A +N +++ +TPLH+A+ + + L+ G D
Sbjct: 11 FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70
Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGAN------VNARNKYAKTPLHIAVEQKNM 423
+ D +G PLH+A + G +A L + + A N T LH+A +
Sbjct: 71 PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130
Query: 424 SALNYLLEHGAQVDARTQL-GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
+ L+ GA V+A+ G+ L++AV++ N +V LLK A+VN G + L
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Query: 483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNE 526
+ I + L + + ES
Sbjct: 191 TWGRPSTRIQQQLGQLTLENLQMLPE----SEDEESYDTESEFT 230
Score = 180 bits (459), Expect = 2e-53
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 16/223 (7%)
Query: 341 KDDENKTPLHIAIE----SQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
++ + LH+AI + + + + A +N +N Q PLH+AV I
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA------QVDARTQLGKDPLYI 449
L+ G + R+ TPLH+A EQ ++++ L + + A G L++
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123
Query: 450 AVEMHNLSIVEQLLKFKANVNSSDQF-GRTVLHLAVKIQNVAILECLLVNKADINAKIIS 508
A L IVE L+ A+VN+ + GRT LHLAV +QN ++ LL AD+N
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183
Query: 509 GIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
G Y+P L + + +L +
Sbjct: 184 G----YSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222
Score = 169 bits (430), Expect = 3e-49
Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 40/259 (15%)
Query: 210 GQLLLHL-VRNGHQNA----VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
G LHL + + + ++ + A ++ ++ L +T L +AV +I E LL
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 265 GACVDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSW 323
G + F ++PLHLA E+ +A V +L +
Sbjct: 68 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT------------------------ 103
Query: 324 NTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQ-GQMPL 382
+ + + + T LH+A V LLV GADVN + G+ L
Sbjct: 104 --------PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155
Query: 383 HIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ 441
H+AV + + L++ GA+VN +P + + + L + +
Sbjct: 156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215
Query: 442 LGKDPLYIAVEMHNLSIVE 460
+D E E
Sbjct: 216 ESEDEESYDTESEFTEFTE 234
Score = 159 bits (405), Expect = 1e-45
Identities = 58/305 (19%), Positives = 101/305 (33%), Gaps = 98/305 (32%)
Query: 73 AVDNLGNTVLHTVASIKTRDPTA---VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMV 129
+ G++ LH +A I + +K + A +N +N TPLH+A T ++
Sbjct: 3 QLTEDGDSFLH-LAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 130 RVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGAD------INVENNFGKTAF 175
L+ G E ++ +G LH+A VG+L + + N G T
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC- 120
Query: 176 QMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGAN 234
LHL +G+ V+L++ GA+
Sbjct: 121 --------------------------------------LHLASIHGYLGIVELLVSLGAD 142
Query: 235 VHAKDQLC-KTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQL 292
V+A++ +TAL +AV+ + +V LL GA V+ + + +SP L + I Q
Sbjct: 143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQ 202
Query: 293 LLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
L + E++
Sbjct: 203 LGQ--------------------------------------LTLENLQMLPESEDEESYD 224
Query: 353 IESQC 357
ES+
Sbjct: 225 TESEF 229
Score = 136 bits (345), Expect = 3e-37
Identities = 48/273 (17%), Positives = 86/273 (31%), Gaps = 61/273 (22%)
Query: 7 ATNKEGITLFQQAIVSSQTP----IAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
++G + AI+ + + + + A +N + ++ LH+A N +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN-NLQQTPLHLAVITNQPEIA 61
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRAN------VNIKNKEGDT 115
LL D D GNT LH +A + + V +L + + N G T
Sbjct: 62 EALLGAGCDPELRDFRGNTPLH-LACEQGCLAS-VGVLTQSCTTPHLHSILKATNYNGHT 119
Query: 116 PLHIAARTGNYKMVRVLIDHGAHTECK-NHQGYNALHVA--------VGILLRKGADINV 166
LH+A+ G +V +L+ GA + G ALH+A V +LL+ GAD+N
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226
G + +Q+ +
Sbjct: 180 VTYQGYSPYQLT--------------------------------------WGRPSTRIQQ 201
Query: 227 LILEKGANVHAKDQLCKTALDIAVEHGHLKIVE 259
+ + + E + E
Sbjct: 202 QLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
Score = 124 bits (314), Expect = 8e-33
Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 23/196 (11%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
A +N N T A++++Q IA+ L G + D G + LH+A + +
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD---FRGNTPLHLACEQGCLA 92
Query: 60 LVRLLLEYNVD------VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIK-NKE 112
V +L + + A + G+T LH +ASI VE+L + A+VN +
Sbjct: 93 SVGVLTQSCTTPHLHSILKATNYNGHTCLH-LASIHGYLGI-VELLVSLGADVNAQEPCN 150
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG--------ILLRKGADI 164
G T LH+A N +V +L+ GA +QGY+ + G L + +
Sbjct: 151 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210
Query: 165 NVENNFGKTAFQMAYE 180
+ E
Sbjct: 211 LQMLPESEDEESYDTE 226
Score = 41.8 bits (99), Expect = 3e-04
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN 57
ADVN +G + +Q T I + L + P + +
Sbjct: 175 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP-ESEDEESYDTESE 228
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 168 bits (429), Expect = 3e-49
Identities = 54/228 (23%), Positives = 90/228 (39%), Gaps = 26/228 (11%)
Query: 346 KTPLHIAIESQCWDAVS-LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANV 403
++PL +A + A+S LL G +V+ G+ LHIA + L+ +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 404 -----NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR-------------TQLGKD 445
+ +T LHIAV +N++ + LL GA V AR G+
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAI----LECLLVNKAD 501
PL A + + IV L++ A++ + D G TVLH+ + N LL
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 502 INAKIISGIW--KGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGN 547
+ K + + +G TP LA N + L+ + + +
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 155 bits (395), Expect = 3e-44
Identities = 49/254 (19%), Positives = 93/254 (36%), Gaps = 44/254 (17%)
Query: 210 GQLLLHL-VRNGHQNAV-KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
+ L L + A+ KL+ +G VH + + +TAL IA + +L+ L++
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 268 VDSLQFI------HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRK 321
+ + LH+A+ Q++ +V+ LL +++ +
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALL---ARGASVSARA------------TG 107
Query: 322 SWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP 381
S L+Y+G + PL A + V LL++HGAD+ D+ G
Sbjct: 108 SVFHYRPHNLIYYG----------EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157
Query: 382 LHIAVQNGYVAIPN-----LIRHGANVNA------RNKYAKTPLHIAVEQKNMSALNYLL 430
LHI + L+ + + N TP +A + N+ +L+
Sbjct: 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
Query: 431 EHGAQVDARTQLGK 444
+ + A
Sbjct: 218 QKRKHIAAAHHHHH 231
Score = 134 bits (340), Expect = 2e-36
Identities = 48/255 (18%), Positives = 87/255 (34%), Gaps = 55/255 (21%)
Query: 77 LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG 136
+ + L +A+ + ++LK V+ + G+T LHIAA N + VL++
Sbjct: 2 IWESPLL-LAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Query: 137 A-----HTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKN 183
+ ++G ALH+A V LL +GA ++ ++ +
Sbjct: 61 PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY 120
Query: 184 FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLC 242
G+ L G + V+L++E GA++ A+D L
Sbjct: 121 --------------------------GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154
Query: 243 KTALDIAVEHGHLKIV----EFLLDHGACVDSLQFIHS-------PLHLAIEKQHIAIVQ 291
T L I + + LL + P LA + +I + Q
Sbjct: 155 NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214
Query: 292 LLLRRNNNNININTK 306
L+ +I
Sbjct: 215 HLM---QKRKHIAAA 226
Score = 131 bits (331), Expect = 3e-35
Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 34/204 (16%)
Query: 378 GQMPLHIAVQNGYVAIPN--LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ 435
+ PL +A + V + L G V+ R +T LHIA N+ A L+E +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 436 V-----DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD-------------QFGR 477
+ + G+ L+IAV N+++V LL A+V++ +G
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 478 TVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAV----INKLL 533
L A + + I+ L+ + ADI A+ G T LH+ + N+ N LL
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDS----LGNTVLHILILQPNKTFACQMYNLLL 178
Query: 534 DYNPDLDVK------DKNGNTALH 551
Y+ +K + G T
Sbjct: 179 SYDGGDHLKSLELVPNNQGLTPFK 202
Score = 126 bits (318), Expect = 2e-33
Identities = 49/227 (21%), Positives = 78/227 (34%), Gaps = 35/227 (15%)
Query: 46 GKSCLHIAATKN--IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
+S L +AA +N L +LL +V+ +G T LH A + A +L
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLE--AAMVLMEAA 60
Query: 104 ANV-----NIKNKEGDTPLHIAARTGNYKMVRVLIDHGA-------------HTECKNHQ 145
+ + EG T LHIA N +VR L+ GA +
Sbjct: 61 PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY 120
Query: 146 GYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKN----FPAIELFLKY 193
G + L A V +L+ GADI +++ G T + N L L Y
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY 180
Query: 194 GVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKD 239
+ G L G+ + +++K ++ A
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227
Score = 106 bits (266), Expect = 3e-26
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN------------DPFPDDGKSC 49
+ + EG T A+++ + + L RGA+++ G+
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 50 LHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTA---VEILKTNRAN 105
L AA +VRLL+E+ D+ A D+LGNTVLH + ++ A +L +
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH-ILILQPNKTFACQMYNLLLSYDGG 183
Query: 106 VNIK------NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYN 148
++K N +G TP +A GN M + L+ H +H ++
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHHH 232
Score = 75.3 bits (186), Expect = 1e-15
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 442 LGKDPLYIAVEMHNLSIVEQLLKFK-ANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
+ + PL +A + +++ + +LLKF+ V+ G T LH+A N+ L+
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 501 DINAKII-SGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKN-------------G 546
++ + + S +++G T LH+AV + N ++ LL + + G
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121
Query: 547 NTALH 551
L
Sbjct: 122 EHPLS 126
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 168 bits (427), Expect = 7e-49
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 13/220 (5%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLH + + L + + KD + + PLH ++ Q + S L+ +VN
Sbjct: 5 PLHQACMENEFFKVQ-ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 373 V---IDNQGQMPLHIAVQNGYVAIPN-LIRH--GANVNARNKYAKTPLHIAVEQKNMSAL 426
+ D+ G P HIA G + + L ++N T LH+AV +K
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL-KFKANVNSSDQFGRTVLHLAVK 485
+L+E+GA V + + + PL+ A + +L ++E L K+ VN D+ G T L A+
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 486 IQNVAILECLLVNK-ADINAKIISGIWKGYTPLHLAVESN 524
+ L+ A+ + KG +A+
Sbjct: 184 EGHGDAAVLLVEKYGAEYDLVDN----KGAKAEDVALNEQ 219
Score = 166 bits (423), Expect = 2e-48
Identities = 52/216 (24%), Positives = 94/216 (43%), Gaps = 13/216 (6%)
Query: 345 NKTPLHIAIES-QCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGAN 402
+ PLH A + + LL + + D G++PLH +V I + L+ N
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 403 VNARN---KYAKTPLHIAVEQKNMSALNYLLEH--GAQVDARTQLGKDPLYIAVEMHNLS 457
VN + TP HIA N+ + L + ++ T G L++AV
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 458 IVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL-VNKADINAKIISGIWKGYTP 516
+ + L++ A+V D+F + LH A + ++ ++E L + K+ +N + +G+TP
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK----QGWTP 177
Query: 517 LHLAVESNNEAVINKLLD-YNPDLDVKDKNGNTALH 551
L A+ + L++ Y + D+ D G A
Sbjct: 178 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED 213
Score = 166 bits (423), Expect = 3e-48
Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 48/260 (18%)
Query: 214 LHL-VRNGHQNAV-KLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
LH V +L+ K + + KDQ + L +V +I FLL V+
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 272 QFI----HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTM 327
+ +P H+A ++ +V+ L R
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRP------------------------------ 95
Query: 328 FKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ 387
++N ++ T LH+A+ + ++ L+++GA V + D Q+PLH A
Sbjct: 96 ------LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS 149
Query: 388 NGYVAIPN-LIRHGAN-VNARNKYAKTPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGK 444
G + + L G + VN ++K TPL A+ + + A L+E +GA+ D G
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA 209
Query: 445 DPLYIAVEMHNLSIVEQLLK 464
+A+ N + + L
Sbjct: 210 KAEDVAL---NEQVKKFFLN 226
Score = 153 bits (390), Expect = 1e-43
Identities = 50/306 (16%), Positives = 95/306 (31%), Gaps = 94/306 (30%)
Query: 77 LGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHG 136
+ N LH A ++ E+L + + + K+++G PLH + +++ L+
Sbjct: 1 MSNYPLH-QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59
Query: 137 A---HTECKNHQGYNALHVA--------VGILLRK--GADINVENNFGKTAFQMAYEMKN 183
+ + G+ H+A V L + D+N N G T +A
Sbjct: 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA----- 114
Query: 184 FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCK 243
V + ++E GA+V KD+ +
Sbjct: 115 ---------------------------------VGKKWFEVSQFLIENGASVRIKDKFNQ 141
Query: 244 TALDIAVEHGHLKIVEFLLDHGACVDSLQFIH--SPLHLAIEKQHIAIVQLLLRRNNNNI 301
L A G LK++E L G + Q +PL A+ + H LL+ +
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK----- 196
Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
+GA ++ D++ +A+ Q
Sbjct: 197 --------------------------------YGAEYDLVDNKGAKAEDVALNEQV---K 221
Query: 362 SLLVKH 367
+ +
Sbjct: 222 KFFLNN 227
Score = 137 bits (347), Expect = 2e-37
Identities = 50/256 (19%), Positives = 95/256 (37%), Gaps = 64/256 (25%)
Query: 27 IAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNA---VDNLGNT 80
+ +LL + + + D DG+ LH + + + LL +VN D+ G T
Sbjct: 18 VQELLHSKPSLLLQKD---QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT 74
Query: 81 VLHTVASIKTRDPTAVEIL--KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138
H S+ + V+ L + + ++N +G T LH+A +++ + LI++GA
Sbjct: 75 PFHIACSVGNLE--VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 139 TECKNHQGYNALHVA--------VGILLRKG-ADINVENNFGKTAFQMAYEMKNFPAIEL 189
K+ LH A + +L G + +N ++ G T A
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA----------- 181
Query: 190 FLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK-LILEKGANVHAKDQLCKTALDI 248
+ GH +A L+ + GA D A D+
Sbjct: 182 ---------------------------LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Query: 249 AVEHGHLKIVEFLLDH 264
A+ + ++ +F L++
Sbjct: 215 AL---NEQVKKFFLNN 227
Score = 91.0 bits (227), Expect = 6e-21
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
D+N +G+T A+ +++ L E GA++ D + LH AA+ ++
Sbjct: 98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD---KFNQIPLHRAASVGSLK 154
Query: 60 LVRLLLEY-NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
L+ LL VN D G T L A + AV +++ A ++ + +G
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLF-HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED 213
Query: 119 IAARTGNYKMVRVLIDH 135
+A N ++ + +++
Sbjct: 214 VAL---NEQVKKFFLNN 227
Score = 90.2 bits (225), Expect = 9e-21
Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Query: 442 LGKDPLYIAVEM-HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
+ PL+ A + E L + + DQ GR LH +V Q I LL
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLD--YNPDLDVKDKNGNTALH 551
++N G+TP H+A N V+ L D PDL+ G T LH
Sbjct: 61 NVNLDDYPDDS-GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112
Score = 40.1 bits (95), Expect = 8e-04
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAER-GANIN--DPFPDDGKSCLHIAATKNI 58
+ VN +K+G T A+ A LL E+ GA + D + G +A + +
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD---NKGAKAEDVALNEQV 220
Query: 59 RLVRLLLE 66
+ L
Sbjct: 221 --KKFFLN 226
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 161 bits (410), Expect = 9e-47
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 12/205 (5%)
Query: 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIR 398
+K E L A + +L V+ +D +G PL+IAV N + I LI
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 399 HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ-VDARTQLGKDPLYIAVEMHNLS 457
GA++N +N + +P A Q L Y+L+H ++ + G + L A E ++
Sbjct: 61 RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120
Query: 458 IVEQLLKF-KANVNSSDQFGRTVLHLAVKIQN-----VAILECLLVNKADINAKIISGIW 511
V+ LL+ + +++ + FG T L AV ++ I++ L+ N AD + K S
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS--- 177
Query: 512 KGYTPLHLAVESNNEAVINKLLDYN 536
G T + A + + L YN
Sbjct: 178 -GRTAMDYANQKGYTEISKILAQYN 201
Score = 150 bits (381), Expect = 1e-42
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 46/232 (19%)
Query: 44 DDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
+ + L A ++ ++ +L + V+ VD GNT L+ +A + L
Sbjct: 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDIEI-AKALIDR 61
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH-TECKNHQGYNALHVA-------- 153
A++N++N D+P A G +++ ++ H N G NAL A
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN 121
Query: 154 VGILLRKG-ADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL 212
V +LL G DI+ +N+FG TA A ++
Sbjct: 122 VKLLLEDGREDIDFQNDFGYTALIEAVGLREG---------------------------- 153
Query: 213 LLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
+Q+ VKL++E GA+ KD +TA+D A + G+ +I + L +
Sbjct: 154 -----NQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 144 bits (366), Expect = 2e-40
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 10/194 (5%)
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
A L QR + + L V+ D E TPL+IA+ + + L+ GAD
Sbjct: 7 GALLEAANQRDTKKVK--EILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 371 VNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGA-NVNARNKYAKTPLHIAVEQKNMSALNY 428
+N+ ++ P A G I +++H ++N N+Y L A E+ ++ +
Sbjct: 65 INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 429 LLEHG-AQVDARTQLGKDPLYIAVEMHN-----LSIVEQLLKFKANVNSSDQFGRTVLHL 482
LLE G +D + G L AV + IV+ L++ A+ + D GRT +
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184
Query: 483 AVKIQNVAILECLL 496
A + I + L
Sbjct: 185 ANQKGYTEISKILA 198
Score = 143 bits (364), Expect = 3e-40
Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 48/235 (20%)
Query: 208 HGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
+ LL + + +++ + V D T L+IAV + ++I + L+D GA
Sbjct: 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63
Query: 267 CVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNT 325
++ SP A + I+ +L+
Sbjct: 64 DINLQNSISDSPYLYAGAQGRTEILAYMLK------------------------------ 93
Query: 326 TMFKTLLYHGA-NVNVKDDENKTPLHIAIESQCWDAVSLLVKHG-ADVNVIDNQGQMPLH 383
H ++N + L A E D V LL++ G D++ ++ G L
Sbjct: 94 --------HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI 145
Query: 384 IAV-----QNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
AV Y I L+ +GA+ + ++ +T + A ++ L ++
Sbjct: 146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 135 bits (343), Expect = 3e-37
Identities = 43/272 (15%), Positives = 88/272 (32%), Gaps = 84/272 (30%)
Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLR 159
+K E L A + K+ +L D + + +G L++A L+
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60
Query: 160 KGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRN 219
+GADIN++N+ + + A
Sbjct: 61 RGADINLQNSISDSPYLYA--------------------------------------GAQ 82
Query: 220 GHQNAVKLILEKGA-NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPL 278
G + +L+ +++ ++ AL A E GH+ V+ LL+ G
Sbjct: 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG------------- 129
Query: 279 HLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWN---TTMFKTLLYHG 335
+I+ + L V + N + K L+ +G
Sbjct: 130 ---------------------REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168
Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKH 367
A+ ++KD+ +T + A + + +L ++
Sbjct: 169 ADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 110 bits (277), Expect = 4e-28
Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 6/148 (4%)
Query: 406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
+ L A ++ L + QVD G PL IAV +++ I + L+
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 466 KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA-DINAKIISGIWKGYTPLHLAVESN 524
A++N + + A IL +L + D+N G L A E
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR----YGGNALIPAAEKG 117
Query: 525 NEAVINKLLDY-NPDLDVKDKNGNTALH 551
+ + LL+ D+D ++ G TAL
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGYTALI 145
Score = 93.3 bits (233), Expect = 5e-22
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGA-NIN--DPFPDDGKSCLHIAATKN-I 58
AD+N N + + A +T I + + ++N + G + L AA K I
Sbjct: 63 ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN---RYGGNALIPAAEKGHI 119
Query: 59 RLVRLLLEY-NVDVNAVDNLGNTVLHTVASIKTRDPT---AVEILKTNRANVNIKNKEGD 114
V+LLLE D++ ++ G T L ++ + V++L N A+ +IK+ G
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGR 179
Query: 115 TPLHIAARTGNYKMVRVLIDH 135
T + A + G ++ ++L +
Sbjct: 180 TAMDYANQKGYTEISKILAQY 200
Score = 90.6 bits (226), Expect = 4e-21
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
L A + + E L V+ D G T L++AV ++ I + L+ ADI
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN-PDLDVKDKNGNTALHP 552
N + +P A ++ +L + PDL+ ++ G AL P
Sbjct: 66 NLQNS----ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP 112
Score = 45.9 bits (110), Expect = 7e-06
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTP-----IAKLLAERGANIN--DPFPDDGKSCLHIAA 54
D++ N G T +A+ + I KLL E GA+ + D + G++ + A
Sbjct: 130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD---NSGRTAMDYAN 186
Query: 55 TKN-IRLVRLLLEYN 68
K + ++L +YN
Sbjct: 187 QKGYTEISKILAQYN 201
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 161 bits (409), Expect = 2e-46
Identities = 36/207 (17%), Positives = 70/207 (33%), Gaps = 9/207 (4%)
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNA 405
+ + A+ + L D+ I + G + V
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT----GLIPSNYVAE 68
Query: 406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL-K 464
+ + PLH A ++ N+S L L++ V+ + G LY A + IVE L +
Sbjct: 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ 128
Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN 524
+N ++ G T LH A I++ LL A + + I + +A +
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI----EKKLAFDMATNAA 184
Query: 525 NEAVINKLLDYNPDLDVKDKNGNTALH 551
+++ K + + +
Sbjct: 185 CASLLKKKQGTDAVRTLSNAEDYLDDE 211
Score = 153 bits (388), Expect = 2e-43
Identities = 38/211 (18%), Positives = 65/211 (30%), Gaps = 12/211 (5%)
Query: 275 HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYH 334
+ A+ L +I + T+ +T L
Sbjct: 13 QVKVFRALYTFEPRTPDELY---IEEGDIIYITDMSDTNWW-------KGTSKGRTGLIP 62
Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
V + + PLH A + + + + VN +D G L+ A G+ I
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 395 N-LIRH-GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
L +N +NK T LH A + + LL GA+ D R K +A
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182
Query: 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
S++++ A S+ +
Sbjct: 183 AACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213
Score = 149 bits (379), Expect = 4e-42
Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 13/217 (5%)
Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH-SPLHLAIEKQHIAIVQLLLRRNNNNI 301
+ + A+ + + L + + + + K ++ +
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP--------SN 64
Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
+ + + PLH +R + + + L + VN D T L+ A D V
Sbjct: 65 YVAEQAESIDNPLHEAAKRGNLSWL--RECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 362 SLLVKH-GADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVE 419
+L ++N + G LH A GY I L+ GA + RN K +A
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182
Query: 420 QKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
S L A + H+
Sbjct: 183 AACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Score = 149 bits (379), Expect = 5e-42
Identities = 38/290 (13%), Positives = 68/290 (23%), Gaps = 81/290 (27%)
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG---ILLRKGAD 163
K G + A T + L L
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNY 65
Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQN 223
+ + A + G+ +
Sbjct: 66 VAEQAESIDNPLHEA--------------------------------------AKRGNLS 87
Query: 224 AVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH-GACVDSL-QFIHSPLHLA 281
++ L+ V+ D+ TAL A GH IVE L ++ + + LH A
Sbjct: 88 WLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147
Query: 282 IEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK 341
K + IVQLLL GA +++
Sbjct: 148 AWKGYADIVQLLLA--------------------------------------KGARTDLR 169
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYV 391
+ E K +A + C + A + + + + + +
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Score = 142 bits (360), Expect = 2e-39
Identities = 30/210 (14%), Positives = 61/210 (29%), Gaps = 13/210 (6%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
+ + T L ++ D + T + V
Sbjct: 15 KVFRALYTFEPRTPDE--LYIEEGDIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVA 67
Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
PLH A + G ++ + + VN +K T L+ A + + L
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT 127
Query: 432 H-GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVA 490
+++ + +LG L+ A IV+ LL A + + + +A +
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACAS 187
Query: 491 ILECLLVNKADINAKIISGIWKGYTPLHLA 520
+L+ A + Y +
Sbjct: 188 LLKKKQGTDAVRTLSNA----EDYLDDEDS 213
Score = 138 bits (351), Expect = 4e-38
Identities = 44/254 (17%), Positives = 77/254 (30%), Gaps = 58/254 (22%)
Query: 45 DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
G+ + A R L D+ + ++ +T S
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK-------GRTGLIPS 63
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
V + + D PLH AA+ GN +R +D+ + G AL+ A V
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123
Query: 156 ILLRK-GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
+L + ++N +N G TA L
Sbjct: 124 MLFTQPNIELNQQNKLGDTA---------------------------------------L 144
Query: 215 HL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-Q 272
H G+ + V+L+L KGA ++ K A D+A +++ A
Sbjct: 145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA 204
Query: 273 FIHSPLHLAIEKQH 286
+ + + H
Sbjct: 205 EDYLDDEDSDLEHH 218
Score = 132 bits (334), Expect = 9e-36
Identities = 35/179 (19%), Positives = 63/179 (35%), Gaps = 11/179 (6%)
Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
GQ+ + A+ P+ L ++ + T + L
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT-----GLIPS 63
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
V + + +PL+ A + NLS + + L + VN D+ G T L+ A + I+E
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123
Query: 494 CLLVNK-ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
L ++N + G T LH A ++ LL D+++ A
Sbjct: 124 MLFTQPNIELNQQN----KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178
Score = 129 bits (327), Expect = 8e-35
Identities = 46/259 (17%), Positives = 72/259 (27%), Gaps = 54/259 (20%)
Query: 6 NATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLL 65
K G +A+ + + L +I D + +K R L
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYIT-DMSDTNWWKGTSKG----RTGL 60
Query: 66 EYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGN 125
+ V + LH A+ + + NR VN +K G T L+ A G+
Sbjct: 61 IPSNYVAEQAESIDNPLH-EAAKRGNLSW-LRECLDNRVGVNGLDKAGSTALYWACHGGH 118
Query: 126 YKMVRVLIDH-GAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQ 176
+V +L +N G ALH A V +LL KGA ++ N K AF
Sbjct: 119 KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178
Query: 177 MAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVH 236
MA + +K A
Sbjct: 179 MA--------------------------------------TNAACASLLKKKQGTDAVRT 200
Query: 237 AKDQLCKTALDIAVEHGHL 255
+ + + H
Sbjct: 201 LSNAEDYLDDEDSDLEHHH 219
Score = 114 bits (288), Expect = 2e-29
Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 16/185 (8%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
D+ T + + +T + + + LH AA + + +
Sbjct: 36 GDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA------ESIDNPLHEAAKRGNLSWL 89
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
R L+ V VN +D G+T L+ A + +N +NK GDT LH AA
Sbjct: 90 RECLDNRVGVNGLDKAGSTALY-WACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
G +V++L+ GA T+ +N + A +A + A + N
Sbjct: 149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL 208
Query: 174 AFQMA 178
+ +
Sbjct: 209 DDEDS 213
Score = 107 bits (269), Expect = 1e-26
Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 9/157 (5%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
V + +A + + +N D G + L+ A
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD---KAGSTALYWACHGGHKD 120
Query: 60 LVRLLL-EYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
+V +L + N+++N + LG+T LH A+ K V++L A +++N E
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALH-AAAWKGYADI-VQLLLAKGARTDLRNIEKKLAFD 178
Query: 119 IAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG 155
+A +++ A N + Y +
Sbjct: 179 MATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215
Score = 82.3 bits (204), Expect = 4e-18
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 9/114 (7%)
Query: 438 ARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLV 497
+ G+ ++ A+ ++L + ++ T ++ V
Sbjct: 7 KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 66
Query: 498 NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+ + PLH A + N + + + LD ++ DK G+TAL+
Sbjct: 67 AEQAES---------IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALY 111
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 160 bits (405), Expect = 9e-46
Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 5/212 (2%)
Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRH 399
N ++A + + ++ + D + LH A G+ I L++
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
G VN ++ +PLHIA + LL GA V+A Q G PL+ A + I
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
LL+ AN ++ D + T +H A N+ ++ LL KA N + G TPLHL
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE----GNTPLHL 178
Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
A + L+ + +++K T L
Sbjct: 179 ACDEERVEEAKFLVTQGASIYIENKEEKTPLQ 210
Score = 157 bits (398), Expect = 7e-45
Identities = 69/233 (29%), Positives = 101/233 (43%), Gaps = 9/233 (3%)
Query: 310 NKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGA 369
N +L K + + +L + D +++T LH A + + V L++ G
Sbjct: 7 NIMICNLAYSGK--LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 370 DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNY 428
VN D+ G PLHIA G I L+ GA+VNA N+ TPLH A +
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
LLE GA DA+ ++ A NL +V LL +KA+ N D G T LHLA +
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541
V + L+ A I + + TPL +A +I K L + +
Sbjct: 185 VEEAKFLVTQGASIYIENK----EEKTPLQVAKGGLG--LILKRLAEGEEASM 231
Score = 139 bits (351), Expect = 4e-38
Identities = 55/232 (23%), Positives = 89/232 (38%), Gaps = 18/232 (7%)
Query: 44 DDGKSCLHIAATKNIR-LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
++A + + L +L D T LH S + VE L
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTE--IVEFLLQL 62
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
VN K+ G +PLHIAA G ++V+ L+ GAH N G LH A
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
+LL GA+ + ++++ TA A N + + L Y + G L
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN-----IQDTEGNTPLH 177
Query: 215 HLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
K ++ +GA+++ +++ KT L +A G L ++ L G
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGE 227
Score = 135 bits (342), Expect = 6e-37
Identities = 45/235 (19%), Positives = 91/235 (38%), Gaps = 19/235 (8%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
+ + + + E + +++ +++ T LH A G+ ++V L+ G
Sbjct: 7 NIMICN--LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 138 HTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIEL 189
K+ G++ LH+A V LL KGA +N N G T A +
Sbjct: 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 190 FLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIA 249
L+ G N + + + G+ V ++L A+ + +D T L +A
Sbjct: 125 LLEGGANPD-----AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Query: 250 VEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNINI 303
+ ++ +FL+ GA + + +PL +A K + ++ L ++
Sbjct: 180 CDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRL-AEGEEASM 231
Score = 135 bits (341), Expect = 1e-36
Identities = 53/274 (19%), Positives = 97/274 (35%), Gaps = 54/274 (19%)
Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRK 160
++A ++ ++ + + ALH A V LL+
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNG 220
G +N +++ G + +A G
Sbjct: 63 GVPVNDKDDAGWSPLHIA--------------------------------------ASAG 84
Query: 221 HQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLH 279
VK +L KGA+V+A +Q T L A +I LL+ GA D+ + + +H
Sbjct: 85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH 144
Query: 280 LAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVN 339
A K ++ +V +LL + N + PLHL + K L+ GA++
Sbjct: 145 RAAAKGNLKMVHILL---FYKASTNIQDTEGNTPLHLACDEE--RVEEAKFLVTQGASIY 199
Query: 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNV 373
+++ E KTPL +A + + G + ++
Sbjct: 200 IENKEEKTPLQVAKGGL--GLILKRLAEGEEASM 231
Score = 112 bits (282), Expect = 2e-28
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 14/204 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
+ T+++ T A + T I + L + G +ND D G S LHIAA+ +V
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIV 89
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+ LL VNAV+ G T LH AS + +L AN + K+ T +H AA
Sbjct: 90 KALLVKGAHVNAVNQNGCTPLHYAASKNRHE--IAVMLLEGGANPDAKDHYDATAMHRAA 147
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
GN KMV +L+ + A T ++ +G LH+A L+ +GA I +EN KT
Sbjct: 148 AKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207
Query: 174 AFQMAYEMKNFPAIELFLKYGVNV 197
Q+A I L G
Sbjct: 208 PLQVAKGGLG--LILKRLAEGEEA 229
Score = 100 bits (250), Expect = 3e-24
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 10/171 (5%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
VN + G + A + I K L +GA++N +G + LH AA+KN +
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIA 122
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
+LLE + +A D+ T +H A+ V IL +A+ NI++ EG+TPLH+A
Sbjct: 123 VMLLEGGANPDAKDHYDATAMHRAAAKGNLK--MVHILLFYKASTNIQDTEGNTPLHLAC 180
Query: 122 RTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG------ILLRKGADINV 166
+ + L+ GA +N + L VA G L +G + ++
Sbjct: 181 DEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 156 bits (397), Expect = 2e-44
Identities = 37/248 (14%), Positives = 73/248 (29%), Gaps = 28/248 (11%)
Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
+ + H ++ ++ T P ++ + L
Sbjct: 18 EYLIEWKDGHSPSWVPSS---YIAADVVSEYET---PWWTAARKADEQAL---SQLLEDR 68
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID-NQGQMPLHIAVQNGYVAIPN 395
+V+ D+ +T L V LL + GAD++ D G LH+A +
Sbjct: 69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 128
Query: 396 -LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMH 454
L+ GA++ ++ T L +A E + ++ G ++ +
Sbjct: 129 ALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE---KVINVLEGQVFE 185
Query: 455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY 514
+ + G+ V +L V+ A+ AK
Sbjct: 186 YAEV--------DEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK------DYE 231
Query: 515 TPLHLAVE 522
L AV
Sbjct: 232 DGLEYAVA 239
Score = 153 bits (388), Expect = 4e-43
Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 35/264 (13%)
Query: 100 KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA------ 153
+ N+ + EG I + G+ A + A
Sbjct: 2 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADE 58
Query: 154 --VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQ 211
+ LL + D++ + G+TA + + + L + G +++ GG
Sbjct: 59 QALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-----HRDMRGGL 112
Query: 212 LLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS 270
LH+ V+ ++E GA++ +D+ TAL++A E + G +
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 172
Query: 271 LQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKT 330
+ I + ++ + +++ +R K +LV + +
Sbjct: 173 EKVI--NVLEGQVFEYAEVDEIVEKRGK-----------GKDVEYLVRWKDGGDCEWV-- 217
Query: 331 LLYHGANVNVKDDENKTPLHIAIE 354
H A KD + L A+
Sbjct: 218 KGVHVAEDVAKD--YEDGLEYAVA 239
Score = 144 bits (366), Expect = 5e-40
Identities = 39/235 (16%), Positives = 73/235 (31%), Gaps = 24/235 (10%)
Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
+ E I + + ADV ++ + P A + +
Sbjct: 6 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALS 62
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR-TQLGKDPLYIAVEMH 454
+ +V+A ++ +T L + + L E GA +D R + G L++A
Sbjct: 63 QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122
Query: 455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK--------- 505
+VE L++ A++ D+ G T L LA +I + I +
Sbjct: 123 RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182
Query: 506 ---------IISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
I+ KG +L + + + KD L
Sbjct: 183 VFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDY--EDGLE 235
Score = 136 bits (346), Expect = 3e-37
Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 35/260 (13%)
Query: 6 NATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLL 64
+ T EG + +P + A++ + ++ AA K + + L
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQL 64
Query: 65 LEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE-GDTPLHIAART 123
LE + DV+AVD G T L + D V +L A+++ ++ G T LH+AA
Sbjct: 65 LE-DRDVDAVDENGRTALL-FVAGLGSDKC-VRLLAEAGADLDHRDMRGGLTALHMAAGY 121
Query: 124 GNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAF 175
++V L++ GA E ++ +G AL +A G ++ G I +E
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV---INV 178
Query: 176 QMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANV 235
+ E+ K G G + + + + A
Sbjct: 179 LEGQVFEYAEVDEIVEKRG-------------KGKDVEYLVRWKDGGDCEWVKGVHVAED 225
Query: 236 HAKDQLCKTALDIAVEHGHL 255
AKD + L+ AV +
Sbjct: 226 VAKDY--EDGLEYAVAESVI 243
Score = 59.5 bits (145), Expect = 3e-10
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 464 KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVES 523
K + + + G + K + AD+ + + TP A
Sbjct: 5 KIIGSRTAGE--GAMEYLIEWKDGHSPSWVPSSYIAADVVS-------EYETPWWTAARK 55
Query: 524 NNEAVINKLLDYNPDLDVKDKNGNTALH 551
+E +++LL+ + D+D D+NG TAL
Sbjct: 56 ADEQALSQLLE-DRDVDAVDENGRTALL 82
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 149 bits (379), Expect = 1e-42
Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 1/163 (0%)
Query: 345 NKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANV 403
N +H ++ ++ +N D +G PL A +G +A+ L+++GA+
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLL 463
K ++ L +A + + LL+ G V+ G PL AV +++ V+ LL
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 464 KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
+ A+ G + LAV + ++ + + + + I
Sbjct: 123 ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 144 bits (367), Expect = 5e-41
Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 40/201 (19%)
Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNI 301
++ G + + ++ ++ + +PL A IA+V+ LL+
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------ 57
Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
+GA+ + ++ L +A D V
Sbjct: 58 --------------------------------NGADPQLLGKGRESALSLACSKGYTDIV 85
Query: 362 SLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQ 420
+L+ G DVN D G PL AV +V L+ GA+ + +AV
Sbjct: 86 KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL 145
Query: 421 KNMSALNYLLEHGAQVDARTQ 441
S + H ++ +
Sbjct: 146 GYRSVQQVIESHLLKLLQNIK 166
Score = 143 bits (364), Expect = 1e-40
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 3/163 (1%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
+H + + T + +N D+E TPL A V L+++GAD
Sbjct: 6 SVHQLAAQGEMLYL--ATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
++ + L +A GY I L+ G +VN + TPL AV ++ + LLE
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQ 474
GA T G + + +AV + S+ + + + + +
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 140 bits (356), Expect = 2e-39
Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 5/168 (2%)
Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
+ +H G + I +N ++ TPL A ++ + +LL++GA
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
+ + L +A IV+ LL +VN D G T L AV +V ++ LL
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 497 VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDK 544
+ AD + SG Y + LAV +V + + L K
Sbjct: 123 ESGADPTIETDSG----YNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 134 bits (339), Expect = 5e-37
Identities = 39/200 (19%), Positives = 68/200 (34%), Gaps = 48/200 (24%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
+ +H + + + +N ++EG TPL AA G +V L+ +GA
Sbjct: 3 NSLSVH-QLAAQGEMLY-LATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
Query: 138 HTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIEL 189
+ +AL +A V +LL G D+N + G T A
Sbjct: 61 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA----------- 109
Query: 190 FLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIA 249
V H VK++LE GA+ + ++D+A
Sbjct: 110 ---------------------------VHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Query: 250 VEHGHLKIVEFLLDHGACVD 269
V G+ + + + H +
Sbjct: 143 VALGYRSVQQVIESHLLKLL 162
Score = 128 bits (324), Expect = 7e-35
Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 49/200 (24%)
Query: 50 LHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNI 108
+H A + + + +E +N D G T L A+ + VE L N A+ +
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLM-WAAAHGQIAV-VEFLLQNGADPQL 64
Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRK 160
K ++ L +A G +V++L+D G + G L A V +LL
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNG 220
GAD +E + G + +A V G
Sbjct: 125 GADPTIETDSGYNSMDLA--------------------------------------VALG 146
Query: 221 HQNAVKLILEKGANVHAKDQ 240
+++ ++I + +
Sbjct: 147 YRSVQQVIESHLLKLLQNIK 166
Score = 124 bits (315), Expect = 9e-34
Identities = 39/242 (16%), Positives = 69/242 (28%), Gaps = 87/242 (35%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADI 164
+H A G + I+ + +G+ L A V LL+ GAD
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQN 223
+ ++A L L G+ +
Sbjct: 63 QLLGKGRESA---------------------------------------LSLACSKGYTD 83
Query: 224 AVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAI 282
VK++L+ G +V+ D T L AV H+K V+ LL+ GA ++ + LA+
Sbjct: 84 IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143
Query: 283 EKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKD 342
+ ++ Q++ H +
Sbjct: 144 ALGYRSVQQVIES--------------------------------------HLLKLLQNI 165
Query: 343 DE 344
E
Sbjct: 166 KE 167
Score = 119 bits (301), Expect = 9e-32
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 4/141 (2%)
Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
+H Q M L +E ++ + G PL A +++VE LL+ A+
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
+ + L LA I++ LL D+N W G TPL AV N+ +
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD----WNGGTPLLYAVHGNHVKCVK 119
Query: 531 KLLDYNPDLDVKDKNGNTALH 551
LL+ D ++ +G ++
Sbjct: 120 MLLESGADPTIETDSGYNSMD 140
Score = 119 bits (300), Expect = 1e-31
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 16/154 (10%)
Query: 27 IAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLH 83
E+ IN D ++G + L AA I +V LL+ D + + L
Sbjct: 18 YLATRIEQENVINHTD---EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALS 74
Query: 84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN 143
+A K V++L +VN + G TPL A + K V++L++ GA +
Sbjct: 75 -LACSKGYTDI-VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132
Query: 144 HQGYNALHVA--------VGILLRKGADINVENN 169
GYN++ +A ++ +
Sbjct: 133 DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 107 bits (269), Expect = 2e-27
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 8/144 (5%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
+N T++EG T A Q + + L + GA+ +S L +A +K
Sbjct: 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTD 83
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
+V++LL+ VDVN D G T L A V++L + A+ I+ G + +
Sbjct: 84 IVKMLLDCGVDVNEYDWNGGTPLL-YAVHGNHVKC-VKMLLESGADPTIETDSGYNSMDL 141
Query: 120 AARTGNYKMVRVLIDHGAHTECKN 143
A G + +V+ H
Sbjct: 142 AVALGYRSVQQVIESHLLKLLQNI 165
Score = 73.6 bits (182), Expect = 2e-15
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
AD K + A T I K+L + G ++N D +G + L A N ++
Sbjct: 60 ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD---WNGGTPLLYAVHGNHVK 116
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKE 112
V++LLE D + G + +A ++++++ + KE
Sbjct: 117 CVKMLLESGADPTIETDSGYNSMD-LAVALGYRSV-QQVIESHLLKLLQNIKE 167
Score = 46.6 bits (112), Expect = 3e-06
Identities = 5/39 (12%), Positives = 12/39 (30%)
Query: 513 GYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+H + ++ ++ D+ G T L
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLM 41
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 151 bits (383), Expect = 1e-42
Identities = 39/231 (16%), Positives = 69/231 (29%), Gaps = 13/231 (5%)
Query: 329 KTLLYHGANVNVKDDEN---KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIA 385
+++L + L A + + V VK D + + +G LH A
Sbjct: 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61
Query: 386 VQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDART-QLG 443
+ +I + LI GANVN+ + + TPLH A + L++HGA + A T G
Sbjct: 62 ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121
Query: 444 KDPLYIAVEMHN--LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
L + ++ + L + L
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA-EFGDELSFREGESVT 180
Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINK-LLDYNPDLDVKDKNGNTALH 551
+ + T A E + + P + + H
Sbjct: 181 VLRRDG----PEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 143 bits (363), Expect = 1e-39
Identities = 44/266 (16%), Positives = 71/266 (26%), Gaps = 48/266 (18%)
Query: 225 VKLILEKGANVHAKDQLC---KTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHL 280
++ +L K + + L A G L++V+ + + + LH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 281 AIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNV 340
AI + +IV L+ GANVN
Sbjct: 61 AICGANYSIVDFLIT--------------------------------------AGANVNS 82
Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID-NQGQMPLHIA--VQNGYVAIPN-L 396
D TPLH A LV+HGA + + G + GY L
Sbjct: 83 PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL 142
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
++ N A L + L++ V R + + A
Sbjct: 143 ADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQE 201
Query: 457 SIVEQ-LLKFKANVNSSDQFGRTVLH 481
V + V + H
Sbjct: 202 GYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 135 bits (342), Expect = 9e-37
Identities = 27/198 (13%), Positives = 63/198 (31%), Gaps = 12/198 (6%)
Query: 361 VSLLVKHGADVNVIDNQ---GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHI 416
+ +++ + L A G + + ++ + + N+ T LH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 417 AVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD-QF 475
A+ N S +++L+ GA V++ G PL+ A ++ I L++ A + ++
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120
Query: 476 GRTVLHLAVKIQNVA--ILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
G T + L + + L + ++
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSMGLMNS----GAVYALWDY-SAEFGDELSFRE 175
Query: 534 DYNPDLDVKDKNGNTALH 551
+ + +D T
Sbjct: 176 GESVTVLRRDGPEETDWW 193
Score = 135 bits (341), Expect = 1e-36
Identities = 36/200 (18%), Positives = 59/200 (29%), Gaps = 7/200 (3%)
Query: 290 VQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPL 349
++ +LR+ + L + + + + ++E T L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVV--QQAVKEMNDPSQPNEEGITAL 58
Query: 350 HIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARN- 407
H AI + V L+ GA+VN D+ G PLH A I L++HGA + A
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Query: 408 KYAKTPLHIAVEQKNMSA--LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF 465
T + A YL + + L+ +
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGE 177
Query: 466 KANVNSSDQFGRTVLHLAVK 485
V D T A
Sbjct: 178 SVTVLRRDGPEETDWWWAAL 197
Score = 133 bits (336), Expect = 6e-36
Identities = 36/234 (15%), Positives = 70/234 (29%), Gaps = 12/234 (5%)
Query: 187 IELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTA 245
+ L+ + + + +LL G V+ +++ + ++ TA
Sbjct: 1 MRSVLRKAGSPRKA---RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITA 57
Query: 246 LDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININ 304
L A+ + IV+FL+ GA V+S +PLH A I L+ + I
Sbjct: 58 LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV---QHGAAIF 114
Query: 305 TKGPTN-KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSL 363
++ + L ++ + + L ++ D +S
Sbjct: 115 ATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSF 173
Query: 364 LVKHGADVNVIDNQGQMPLHIAVQNGYVAI--PNLIRHGANVNARNKYAKTPLH 415
V D + A +G N V + K H
Sbjct: 174 REGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
Score = 127 bits (321), Expect = 7e-34
Identities = 40/213 (18%), Positives = 64/213 (30%), Gaps = 22/213 (10%)
Query: 61 VRLLLEYNVDVNAVDNLGN---TVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPL 117
+R +L +L A + V+ + + N+EG T L
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELE--VVQQAVKEMNDPSQPNEEGITAL 58
Query: 118 HIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVEN- 168
H A NY +V LI GA+ + G+ LH A L++ GA I
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Query: 169 NFGKTAFQMAYEMKN--FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226
+ G TAF+ + ++ G L + +
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLM------NSGAVYALWDYSAEFGDELS 172
Query: 227 LILEKGANVHAKDQLCKTALDIAVEHGHLKIVE 259
+ V +D +T A HG V
Sbjct: 173 FREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205
Score = 106 bits (266), Expect = 3e-26
Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 17/190 (8%)
Query: 3 ADVNATNKE---GITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-I 58
+ + L A ++ + + + + + + P ++G + LH A
Sbjct: 9 GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANY 67
Query: 59 RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN-KEGDTPL 117
+V L+ +VN+ D+ G T LH AS L + A + +G T
Sbjct: 68 SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTV--ICMALVQHGAAIFATTLSDGATAF 125
Query: 118 HIAART--GNYKMVRVLIDHGAHTECKNHQGYNALHVA-------VGILLRKGADINVEN 168
G L D N AL + + + +
Sbjct: 126 EKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRD 185
Query: 169 NFGKTAFQMA 178
+T + A
Sbjct: 186 GPEETDWWWA 195
Score = 98.9 bits (247), Expect = 9e-24
Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 4/154 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
D + N+EGIT AI + I L GAN+N P G + LH AA+ N +
Sbjct: 45 NDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP-DSHGWTPLHCAASCNDTVIC 103
Query: 62 RLLLEYNVDVNAVD-NLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
L+++ + A + G T + L ++ + N L
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163
Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
+ + ++ A
Sbjct: 164 SA-EFGDELSFREGESVTVLRRDGPEETDWWWAA 196
Score = 84.6 bits (210), Expect = 8e-19
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 7/153 (4%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN---IR 59
A+VN+ + G T A + T I L + GA I DG +
Sbjct: 78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD 137
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
L + + +++ L S + D + + V ++ +T
Sbjct: 138 CATYLADVEQSMGLMNSGAVYALW-DYSAEFGD--ELSFREGESVTVLRRDGPEETDWWW 194
Query: 120 AARTGNYKMV-RVLIDHGAHTECKNHQGYNALH 151
AA G V R + + + + H
Sbjct: 195 AALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 149 bits (379), Expect = 2e-42
Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 15/201 (7%)
Query: 339 NVKDDENKTPLHIAIESQCWDAVSLLVKHGADV--NVIDNQGQMPLHIAVQNGYVAIPN- 395
+ D + I E + D N D+ + PL +A G +
Sbjct: 2 SHMDKNGEIVEKIKDE--------KSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDK 53
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
L+ + + ++ T L AV+ + LL G+ V+ + GK PL ++
Sbjct: 54 LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY 113
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
+ LL+ ANVN + G T L +A K I++ LL ADI+A+ + G T
Sbjct: 114 SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL----TGLT 169
Query: 516 PLHLAVESNNEAVINKLLDYN 536
A + VI +
Sbjct: 170 AEASARIFGRQEVIKIFTEVR 190
Score = 146 bits (371), Expect = 2e-41
Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 14/204 (6%)
Query: 265 GACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWN 324
G+ +D + + EK + L N + N+ PL + N
Sbjct: 1 GSHMD--KNGEIVEKIKDEKSINQNLDFL---------RNYRDSYNRTPLMVACMLGMEN 49
Query: 325 TTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHI 384
L+ + + KD E T L A+++ L+ G++VN D G+ PL
Sbjct: 50 AI--DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107
Query: 385 AVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
++ GY + L+ HGANVN RN +TPL +A + + LLE GA + AR G
Sbjct: 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG 167
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKA 467
A +++ + +
Sbjct: 168 LTAEASARIFGRQEVIKIFTEVRR 191
Score = 145 bits (368), Expect = 7e-41
Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 11/193 (5%)
Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNIN 302
+ I E + ++FL ++ + +PL +A + L+ N
Sbjct: 9 EIVEKIKDEKSINQNLDFLRNYRD-----SYNRTPLMVACMLGMENAIDKLV---ENFDK 60
Query: 303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS 362
+ K L V+ + LL G+NVN KD KTPL +I +
Sbjct: 61 LEDKDIEGSTALIWAVKNNRLGIA--EKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118
Query: 363 LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQK 421
L++HGA+VN + +G+ PL +A + G I L+ GA+++AR+ T A
Sbjct: 119 FLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFG 178
Query: 422 NMSALNYLLEHGA 434
+ E
Sbjct: 179 RQEVIKIFTEVRR 191
Score = 143 bits (364), Expect = 2e-40
Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 59/241 (24%)
Query: 35 GANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPT 94
G++++ +G+ I K+I + N D+ T L VA + +
Sbjct: 1 GSHMDK----NGEIVEKIKDEKSINQNL-----DFLRNYRDSYNRTPLM-VACMLGMENA 50
Query: 95 AVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA- 153
++ L N + K+ EG T L A + + L+ G++ K+ G L +
Sbjct: 51 -IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI 109
Query: 154 -------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENV 206
LL GA++N N G+T
Sbjct: 110 IFGYSEMSYFLLEHGANVNDRNLEGETP-------------------------------- 137
Query: 207 KHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHG 265
L + + G VK +LE GA++ A+D TA A G ++++ +
Sbjct: 138 -------LIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190
Query: 266 A 266
Sbjct: 191 R 191
Score = 143 bits (363), Expect = 4e-40
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 13/182 (7%)
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANV--NARNKYAKTPLHIAVEQKNMSALNYL 429
+ +D G++ I + I + N R+ Y +TPL +A +A++ L
Sbjct: 2 SHMDKNGEIVEKIKDEKS-------INQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKL 54
Query: 430 LEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNV 489
+E+ +++ + G L AV+ + L I E+LL +NVN+ D G+T L ++
Sbjct: 55 VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYS 114
Query: 490 AILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTA 549
+ LL + A++N + + +G TPL +A + ++ KLL+ D+ +D G TA
Sbjct: 115 EMSYFLLEHGANVNDRNL----EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
Query: 550 LH 551
Sbjct: 171 EA 172
Score = 129 bits (327), Expect = 4e-35
Identities = 44/272 (16%), Positives = 82/272 (30%), Gaps = 91/272 (33%)
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILL 158
+ +K G+ I + + L ++ ++ L VA + L+
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNY------RDSYNRTPLMVACMLGMENAIDKLV 55
Query: 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVR 218
+ ++ G TA A V+
Sbjct: 56 ENFDKLEDKDIEGSTALIWA--------------------------------------VK 77
Query: 219 NGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSP 277
N + +L KG+NV+ KD KT L ++ G+ ++ FLL+HGA V+ +P
Sbjct: 78 NNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137
Query: 278 LHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN 337
L +A + IV+ LL GA+
Sbjct: 138 LIVASKYGRSEIVKKLLE--------------------------------------LGAD 159
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGA 369
++ +D T A + + + +
Sbjct: 160 ISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 121 bits (307), Expect = 3e-32
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 14/171 (8%)
Query: 32 AERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKT 90
+ N D ++ L +A + L+E + D G+T L A
Sbjct: 24 LDFLRNYRD---SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALI-WAVKNN 79
Query: 91 RDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNAL 150
R E L + +NVN K+ G TPL + G +M L++HGA+ +N +G L
Sbjct: 80 RLGI-AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPL 138
Query: 151 HVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKY 193
VA V LL GADI+ + G TA A I++F +
Sbjct: 139 IVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189
Score = 115 bits (292), Expect = 3e-30
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 8/156 (5%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-I 58
D N + T A + L E + D +G + L A N +
Sbjct: 25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD---IEGSTALIWAVKNNRL 81
Query: 59 RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
+ LL +VN D G T L + I L + ANVN +N EG+TPL
Sbjct: 82 GIAEKLLSKGSNVNTKDFSGKTPLM-WSIIFGYSEM-SYFLLEHGANVNDRNLEGETPLI 139
Query: 119 IAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
+A++ G ++V+ L++ GA ++ G A A
Sbjct: 140 VASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 146 bits (371), Expect = 2e-41
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 3/177 (1%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGA-DVNVIDNQGQMPLHIAVQNGYVAIPN-LIRH 399
E + AV L + + D+N D+ G PLH A + G A+ LI
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
GA +N N+ TPLH+A + + LL++ A ++A + G PL+ A +
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK-IISGIWKGYT 515
E L+ A V+ +++G + A + E ++N WKG T
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKGTT 178
Score = 145 bits (368), Expect = 5e-41
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNINI-NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
+ + + V+L L N++N + G + PLH + + L+ G
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFS---PLHWACREGRSAVV--EMLIMRG 62
Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
A +NV + + TPLH+A D V L+++ AD+N ++ G +PLH A G +
Sbjct: 63 ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAE 122
Query: 396 -LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
L+ +GA V+ NKY + P+ A + G ++
Sbjct: 123 DLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166
Score = 136 bits (346), Expect = 7e-38
Identities = 43/282 (15%), Positives = 83/282 (29%), Gaps = 109/282 (38%)
Query: 110 NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENN 169
+ E + R GN VR+ +D+ D+N ++
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTE------------------------NDLNQGDD 37
Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLI 228
G + LH R G V+++
Sbjct: 38 HGFSP---------------------------------------LHWACREGRSAVVEML 58
Query: 229 LEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHI 287
+ +GA ++ ++ T L +A HGH IV+ LL + A ++++ + + PLH A
Sbjct: 59 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118
Query: 288 AIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKT 347
+ + L+ +GA V++ + +
Sbjct: 119 QVAEDLVA--------------------------------------NGALVSICNKYGEM 140
Query: 348 PLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG 389
P+ A K G ++N ++P G
Sbjct: 141 PVDKAKAPLRELLRERAEKMGQNLN------RIPYKDTFWKG 176
Score = 132 bits (336), Expect = 2e-36
Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 9/179 (5%)
Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGAN-VNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
+ + + G + + N +N + + +PLH A + + + L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 433 GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAIL 492
GA+++ + PL++A + IV++LL++KA++N+ ++ G LH A +
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121
Query: 493 ECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDL---DVKDKNGNT 548
E L+ N A ++ G P+ A E + + +L KD
Sbjct: 122 EDLVANGALVSICNK----YGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKG 176
Score = 131 bits (331), Expect = 8e-36
Identities = 39/221 (17%), Positives = 59/221 (26%), Gaps = 54/221 (24%)
Query: 75 DNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
+ + L ++N + G +PLH A R G +V +LI
Sbjct: 2 SPEFMDDIF-TQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 135 HGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPA 186
GA N LH+A V LL+ ADIN N G
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP------------ 108
Query: 187 IELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTA 245
LH G + ++ GA V ++ +
Sbjct: 109 ---------------------------LHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141
Query: 246 LDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQH 286
+D A + E G ++ P K
Sbjct: 142 VDKAKAPLRELLRERAEKMGQNLN-----RIPYKDTFWKGT 177
Score = 116 bits (293), Expect = 2e-30
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQ-VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
+ + N A+ L++ ++ G PL+ A ++VE L+ A +
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
N ++ T LHLA + I++ LL KADINA G PLH A + V
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE----HGNVPLHYACFWGQDQVA 121
Query: 530 NKLLDYNPDLDVKDKNGNTALH 551
L+ + + +K G +
Sbjct: 122 EDLVANGALVSICNKYGEMPVD 143
Score = 111 bits (281), Expect = 7e-29
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 11/166 (6%)
Query: 9 NKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEY 67
+ E + +L + N + D G S LH A + +V +L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 68 NVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYK 127
+N ++ +T LH AS RD V+ L +A++N N+ G+ PLH A G +
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRD--IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119
Query: 128 MVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADIN 165
+ L+ +GA N G + A + G ++N
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165
Score = 107 bits (271), Expect = 2e-27
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
D+N + G + A ++ + ++L RGA IN + + LH+AA+
Sbjct: 30 NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN---RGDDTPLHLAASHGHRD 86
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
+V+ LL+Y D+NAV+ GN LH A +D E L N A V+I NK G+ P+
Sbjct: 87 IVQKLLQYKADINAVNEHGNVPLH-YACFWGQDQV-AEDLVANGALVSICNKYGEMPVDK 144
Query: 120 AARTGNYKMVRVLIDHGA 137
A + G
Sbjct: 145 AKAPLRELLRERAEKMGQ 162
Score = 91.7 bits (229), Expect = 1e-21
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKAN-VNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
D ++ N V L N +N D G + LH A + A++E L++ A
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR 64
Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
IN TPLHLA + ++ KLL Y D++ +++GN LH
Sbjct: 65 INVMNRGD----DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLH 110
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 144 bits (365), Expect = 1e-40
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 2/152 (1%)
Query: 329 KTLLYHGAN-VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQ 387
K L G N VN D+ TPL A + V L++ GAD +++ + + L +A
Sbjct: 19 KEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAST 78
Query: 388 NGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP 446
GY I L+ ++N + TPL AV ++ + LL GA + G P
Sbjct: 79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP 138
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT 478
+ +AV + + + + + S+
Sbjct: 139 MDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 143 bits (363), Expect = 2e-40
Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 6/174 (3%)
Query: 345 NKTPLHIAIESQCWDAVSLLVKHGAD-VNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGAN 402
+ +H D + ++ G + VN D +G PL A G + L+ GA+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 403 VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQL 462
+ K ++ L +A + LLE ++ G PL AV +++ VE L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 463 LKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTP 516
L A++ + G T + LAV + + + + + + + P
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV----PADP 171
Score = 141 bits (359), Expect = 6e-40
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 6/173 (3%)
Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGAN-VNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQ 435
+ +H G + +R G N VN ++ TPL A + + +LLE GA
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 436 VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
+ + L +A IV LL+ ++N D G T L AV+ +V +E L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 496 LVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
L AD+ + SG YTP+ LAV V + ++ L +
Sbjct: 122 LARGADLTTEADSG----YTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 132 bits (335), Expect = 2e-36
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 8/176 (4%)
Query: 209 GGQLLLHL-VRNGHQNAVKLILEKGAN-VHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
G L +H G + +K L KG N V+ D+ T L A G ++ V FLL+ GA
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 267 CVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNT 325
L + S L LA + IV LLL +++IN PL V+
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVRGNHVKC 117
Query: 326 TMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMP 381
+ LL GA++ + D TP+ +A+ ++ H + + P
Sbjct: 118 V--EALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 130 bits (330), Expect = 1e-35
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 49/201 (24%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRAN-VNIKNKEGDTPLHIAARTGNYKMVRVLIDHG 136
+ +H + + ++ N VN ++ G TPL A+ G + VR L++ G
Sbjct: 2 DSLSIH-QLAAQGELDQ-LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59
Query: 137 AHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIE 188
A + +AL +A VG+LL + DIN+ + G T A
Sbjct: 60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA---------- 109
Query: 189 LFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDI 248
VR H V+ +L +GA++ + T +D+
Sbjct: 110 ----------------------------VRGNHVKCVEALLARGADLTTEADSGYTPMDL 141
Query: 249 AVEHGHLKIVEFLLDHGACVD 269
AV G+ K+ + + +H +
Sbjct: 142 AVALGYRKVQQVIENHILKLF 162
Score = 124 bits (314), Expect = 2e-33
Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 11/171 (6%)
Query: 12 GITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVD 70
Q + K +G N+ + + G + L A+ I VR LLE+ D
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 71 VNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVR 130
+ + + L +AS V +L ++NI + G TPL A R + K V
Sbjct: 62 PHILAKERESALS-LASTGGYTDI-VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119
Query: 131 VLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKT 173
L+ GA + GY + +A ++ + N
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 112 bits (284), Expect = 2e-29
Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 5/142 (3%)
Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQ-VDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANV 469
+H Q + L L G V+ + G PL A + V LL++ A+
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 470 NSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVI 529
+ + + L LA I+ LL DIN W G TPL AV N+ +
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLLERDVDINIYD----WNGGTPLLYAVRGNHVKCV 118
Query: 530 NKLLDYNPDLDVKDKNGNTALH 551
LL DL + +G T +
Sbjct: 119 EALLARGADLTTEADSGYTPMD 140
Score = 79.8 bits (198), Expect = 1e-17
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
AD + KE + A T I LL ER +IN D +G + L A N ++
Sbjct: 60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD---WNGGTPLLYAVRGNHVK 116
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTP 116
V LL D+ + G T + +A ++++ + + N P
Sbjct: 117 CVEALLARGADLTTEADSGYTPMD-LAVALGYRKV-QQVIENHILKLFQSNLVPADP 171
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 144 bits (365), Expect = 5e-40
Identities = 44/282 (15%), Positives = 82/282 (29%), Gaps = 66/282 (23%)
Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNIN 302
+ +L K + HG V + L + + +VQ ++
Sbjct: 6 QVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRII-------- 57
Query: 303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS 362
Y + ++ +DE T LH A+ + + V
Sbjct: 58 ------------------------------YEVDDPSLPNDEGITALHNAVCAGHTEIVK 87
Query: 363 LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNK---YAKTPLHIAV 418
LV+ G +VN D+ G PLH A V + L+ GA V A +
Sbjct: 88 FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM 147
Query: 419 EQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT 478
E+ +L ++ + L+ ++ E +K + +
Sbjct: 148 EEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD---ELPMKEGDCMTIIHR---- 200
Query: 479 VLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLA 520
++ +E D +GY P +L
Sbjct: 201 --------EDEDEIEWWWARLNDK---------EGYVPRNLL 225
Score = 143 bits (364), Expect = 8e-40
Identities = 31/210 (14%), Positives = 67/210 (31%), Gaps = 12/210 (5%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHG 400
+ + L + S + HG V + L + G + +I
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 401 ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
+ + N T LH AV + + +L++ G V+A G PL+ A +N+ + +
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 461 QLLKFKANVNS---SDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPL 517
L++ A V + SD ++ + L + + L
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNK----GVIYAL 176
Query: 518 HLAVESNNEAVINKLLDYNPDLDVKDKNGN 547
N++ + + + + +
Sbjct: 177 WDYEPQNDDEL---PMKEGDCMTIIHREDE 203
Score = 143 bits (363), Expect = 1e-39
Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 3/178 (1%)
Query: 375 DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHG 433
+ GQ+ L + + I HG V N L + + + ++
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
G L+ AV + IV+ L++F NVN++D G T LH A NV + +
Sbjct: 61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120
Query: 494 CLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
L+ + A + A S + +E L + + +K AL
Sbjct: 121 FLVESGAAVFAMTYSDMQ-TAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177
Score = 135 bits (343), Expect = 7e-37
Identities = 45/294 (15%), Positives = 81/294 (27%), Gaps = 96/294 (32%)
Query: 111 KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGA 162
G L RT K I HG + L + V ++ +
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 163 DINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGH 221
D ++ N+ G TA LH V GH
Sbjct: 62 DPSLPNDEGITA---------------------------------------LHNAVCAGH 82
Query: 222 QNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL----QFIHSP 277
VK +++ G NV+A D T L A ++++ +FL++ GA V ++ +
Sbjct: 83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD 142
Query: 278 LHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGAN 337
+E+ + Q L
Sbjct: 143 KCEEMEEGYTQCSQFLYG--------------------------------------VQEK 164
Query: 338 VNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVI--DNQGQMPLHIAVQNG 389
+ + + L L +K G + +I +++ ++ A N
Sbjct: 165 MGIMNKGVIYALWDYEPQN---DDELPMKEGDCMTIIHREDEDEIEWWWARLND 215
Score = 126 bits (319), Expect = 2e-33
Identities = 36/269 (13%), Positives = 76/269 (28%), Gaps = 64/269 (23%)
Query: 43 PD-DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILK 100
P+ G+ L N + + + + V + L +L +S++ V+ +
Sbjct: 1 PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLL-DSSLEGEFDL-VQRII 57
Query: 101 TNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA------- 153
+ ++ N EG T LH A G+ ++V+ L+ G + + G+ LH A
Sbjct: 58 YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 154 -VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL 212
L+ GA +
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQ------------------------------------TAA 141
Query: 213 LLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
+ G+ + + + ++ AL E + G C+
Sbjct: 142 DKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD---ELPMKEGDCM--- 195
Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNN 300
I ++ ++ R N+
Sbjct: 196 --------TIIHREDEDEIEWWWARLNDK 216
Score = 120 bits (303), Expect = 3e-31
Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 19/200 (9%)
Query: 10 KEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYN 68
G ++ G + F + L ++ + LV+ ++
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEV 60
Query: 69 VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKM 128
D + ++ G T LH A V+ L NVN + +G TPLH AA N ++
Sbjct: 61 DDPSLPNDEGITALH-NAVCAGHTEI-VKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118
Query: 129 VRVLIDHGAHTECKNH---QGYNALHVA--------VGILLRKGADINVENNFGKTAFQM 177
+ L++ GA + Q L + + N A
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL-W 177
Query: 178 AYEMKNFPAIELFLKYGVNV 197
YE +N EL +K G +
Sbjct: 178 DYEPQN--DDELPMKEGDCM 195
Score = 105 bits (264), Expect = 7e-26
Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 13/173 (7%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
V N + L + + + + + + + + P D+G + LH A +V
Sbjct: 29 MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIV 86
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK---EGDTPLH 118
+ L+++ V+VNA D+ G T LH AS + L + A V +
Sbjct: 87 KFLVQFGVNVNAADSDGWTPLHCAASCNNVQ--VCKFLVESGAAVFAMTYSDMQTAADKC 144
Query: 119 IAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVG-----ILLRKGADINV 166
G + + L N AL + +++G + +
Sbjct: 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTI 197
Score = 59.2 bits (144), Expect = 4e-10
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 24/140 (17%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSC--LHIAATKN-IR 59
+VNA + +G T A + + K L E GA + D ++ + +
Sbjct: 94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ 153
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK-------- 111
+ L + ++ L + D E+ + I ++
Sbjct: 154 CSQFLYGVQEKMGIMNKGVIYALW-DYEPQNDD----ELPMKEGDCMTIIHREDEDEIEW 208
Query: 112 --------EGDTPLHIAART 123
EG P ++
Sbjct: 209 WWARLNDKEGYVPRNLLGLY 228
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 140 bits (356), Expect = 1e-39
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
L A + D V +L+ +GA D G PLH+A Q G+ + L+R G + +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
AR K +TPLH+A + + + + LL+HGA V+A+ L L+ A E ++ +VE L+K
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
+ A+V++ +F +T +++ N + E L
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 129 bits (328), Expect = 1e-35
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNIN 302
L A G V L+ +GA + SPLHLA + H + ++LL ++
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLL---RAGVS 59
Query: 303 INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVS 362
+ + ++ PLH+ N + LL HGA+VN KD T LH A E + V
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIV--EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 363 LLVKHGADVNVIDNQGQMPLHIAVQNGYVAI 393
LL+K+GADV+ + I++ NG +
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Score = 129 bits (326), Expect = 2e-35
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
L A + G L+ +GA + +PLH+A + + S LL G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
DART++ + PL++A + +IVE LLK A+VN+ D T LH A + + ++E L+
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 497 VNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
AD++ + T +++++ NE + ++L
Sbjct: 121 KYGADVHTQSK----FCKTAFDISIDNGNEDLA-EIL 152
Score = 119 bits (301), Expect = 6e-32
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 50/192 (26%)
Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGAD 163
+ L AAR G VR+L+ +GA + G + LH+A +LLR G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQ 222
+ +T LH+ GH
Sbjct: 60 RDARTKVDRTP---------------------------------------LHMAASEGHA 80
Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLA 281
N V+++L+ GA+V+AKD L TAL A EH H ++VE L+ +GA V + +F + ++
Sbjct: 81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140
Query: 282 IEKQHIAIVQLL 293
I+ + + ++L
Sbjct: 141 IDNGNEDLAEIL 152
Score = 117 bits (297), Expect = 2e-31
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
Query: 45 DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
D L AA VR+L+ D LG + LH +A+ T E+L
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLH-LAAQYGHFST-TEVLLRAG 57
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
+ + + K TPLH+AA G+ +V VL+ HGA K+ ALH A V
Sbjct: 58 VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 156 ILLRKGADINVENNFGKTAFQMAYEMKNFPAIEL 189
+L++ GAD++ ++ F KTAF ++ + N E+
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Score = 115 bits (292), Expect = 1e-30
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
L A + L+ +GA LG PL++A + + S E LL+ + +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
+ + RT LH+A + I+E LL + AD+NAK + T LH A E N++ V+
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM----LKMTALHWATEHNHQEVVE 117
Query: 531 KLLDYNPDLDVKDKNGNTALH 551
L+ Y D+ + K TA
Sbjct: 118 LLIKYGADVHTQSKFCKTAFD 138
Score = 109 bits (276), Expect = 2e-28
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 7/157 (4%)
Query: 209 GGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268
G+ LL R G + V++++ GA D L + L +A ++GH E LL G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 269 DSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTM 327
D+ + +PLH+A + H IV++LL + ++N K LH +
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLL---KHGADVNAKDMLKMTALHWATEHNHQEVV- 116
Query: 328 FKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLL 364
+ L+ +GA+V+ + KT I+I++ D +L
Sbjct: 117 -ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 107 bits (271), Expect = 9e-28
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 27 IAKLLAERGANIN-DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHT 84
++L GA D G S LH+AA +LL V +A + T LH
Sbjct: 17 EVRILMANGAPFTTD---WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH- 72
Query: 85 VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
+A+ + VE+L + A+VN K+ T LH A + ++V +LI +GA ++
Sbjct: 73 MAASEGHANI-VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131
Query: 145 QGYNALHVAV 154
A +++
Sbjct: 132 FCKTAFDISI 141
Score = 91.3 bits (228), Expect = 6e-22
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 9/133 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
A + G + A ++L G + + ++ LH+AA++
Sbjct: 26 APFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART---KVDRTPLHMAASEGHAN 81
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
+V +LL++ DVNA D L T LH A+ VE+L A+V+ ++K T I
Sbjct: 82 IVEVLLKHGADVNAKDMLKMTALH-WATEHNHQEV-VELLIKYGADVHTQSKFCKTAFDI 139
Query: 120 AARTGNYKMVRVL 132
+ GN + +L
Sbjct: 140 SIDNGNEDLAEIL 152
Score = 65.9 bits (162), Expect = 4e-13
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 476 GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
L A + + L+ N A W G +PLHLA + + + LL
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTD-----WLGTSPLHLAAQYGHFSTTEVLLRA 56
Query: 536 NPDLDVKDKNGNTALH 551
D + K T LH
Sbjct: 57 GVSRDARTKVDRTPLH 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 139 bits (354), Expect = 3e-39
Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 6/159 (3%)
Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
L A + + V+ L ++N PLH + + LL HGA
Sbjct: 11 QLLEAAKAGDVETVKKLC--TVQSVNCRDIEGRQSTPLHFAAGYNRVSVV--EYLLQHGA 66
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
+V+ KD PLH A ++ LLVKHGA VNV D PLH A G I
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
L++HGA+ +N+ TPL + + + + L A
Sbjct: 127 LLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 133 bits (338), Expect = 5e-37
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 6/168 (3%)
Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLV-KHGADVNVIDNQGQMPLHIAVQNGYVAI 393
GA N + L A ++ + V L + I+ + PLH A V++
Sbjct: 1 GAMGNSEA---DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 394 PN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
L++HGA+V+A++K PLH A + L++HGA V+ PL+ A
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
I + LL+ A+ ++ G T L L + I + L + A
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 130 bits (329), Expect = 1e-35
Identities = 50/168 (29%), Positives = 69/168 (41%), Gaps = 11/168 (6%)
Query: 368 GADVNVIDNQGQMPLHIAVQNGYVAIPN--LIRHGANVNARNKYAKTPLHIAVEQKNMSA 425
GA N ++ L A + G V N TPLH A +S
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 426 LNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK 485
+ YLL+HGA V A+ + G PL+ A + + E L+K A VN +D + T LH A
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 486 IQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
I + LL + AD K G TPL L + + + LL
Sbjct: 118 KGKYEICKLLLQHGADPTKKNR----DGNTPLDLVKDGDTDIQ--DLL 159
Score = 123 bits (312), Expect = 2e-33
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 17/170 (10%)
Query: 35 GANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYN-VDVNAVDNLGNTVLHTVASIKTRD 92
GA N + L AA + V+ L V+ ++ +T LH A+ R
Sbjct: 1 GAMGNS----EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYNRV 55
Query: 93 PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
VE L + A+V+ K+K G PLH A G+Y++ +L+ HGA + + LH
Sbjct: 56 SV-VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHE 114
Query: 153 A--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
A +LL+ GAD +N G T + + + +L
Sbjct: 115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163
Score = 115 bits (292), Expect = 1e-30
Identities = 52/268 (19%), Positives = 77/268 (28%), Gaps = 107/268 (39%)
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGAD 163
A N E D L AA+ G+ + V+ L +
Sbjct: 2 AMGN---SEADRQLLEAAKAGDVETVKKLCTVQ------------------------SVN 34
Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQ 222
T LH
Sbjct: 35 CRDIEGRQSTP---------------------------------------LHFAAGYNRV 55
Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLA 281
+ V+ +L+ GA+VHAKD+ L A +GH ++ E L+ HGA V+ + +PLH A
Sbjct: 56 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115
Query: 282 IEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK 341
K I +LLL+ HGA+ K
Sbjct: 116 AAKGKYEICKLLLQ--------------------------------------HGADPTKK 137
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGA 369
+ + TPL + + D LL A
Sbjct: 138 NRDGNTPLDLVKDGDT-DIQDLLRGDAA 164
Score = 107 bits (270), Expect = 2e-27
Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 12/163 (7%)
Query: 9 NKEGITLFQQAIVSSQTPIAKLLAER-GANINDPFPDDGKSCLHIAATKN-IRLVRLLLE 66
N E +A + K L N D + LH AA N + +V LL+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-IEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 67 YNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNY 126
+ DV+A D G LH S + E+L + A VN+ + TPLH AA G Y
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121
Query: 127 KMVRVLIDHGAHTECKNHQGYNALHVA-------VGILLRKGA 162
++ ++L+ HGA KN G L + +L A
Sbjct: 122 EICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRGDAA 164
Score = 100 bits (252), Expect = 5e-25
Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-I 58
+ T A ++ + + L + GA+++ D G LH A +
Sbjct: 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD---KGGLVPLHNACSYGHY 88
Query: 59 RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
+ LL+++ VN D T LH A+ K + ++L + A+ KN++G+TPL
Sbjct: 89 EVAELLVKHGAVVNVADLWKFTPLH-EAAAKGKYEI-CKLLLQHGADPTKKNRDGNTPLD 146
Query: 119 IAARTGNYKMVRVLIDHGA 137
+ G+ + +L A
Sbjct: 147 LVKD-GDTDIQDLLRGDAA 164
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 138 bits (351), Expect = 1e-38
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 367 HGADVNVI-DNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMS 424
G+ + + L A + G L+ +GA+VNA + TPLH+A ++
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 425 ALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAV 484
+ LL++GA V+A G PL +A +L IVE LLK A+VN++D G T LHLA
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Query: 485 KIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
++ I+E LL N AD+NA+ G T +++++ NE + L N
Sbjct: 122 MFGHLEIVEVLLKNGADVNAQDK----FGKTAFDISIDNGNEDLAEILQKLN 169
Score = 137 bits (347), Expect = 4e-38
Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 41/205 (20%)
Query: 231 KGANV-HAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIA 288
+G++ H L A G V L+ +GA V++ +PLHLA H+
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 289 IVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTP 348
IV++LL+ +GA+VN D TP
Sbjct: 62 IVEVLLK--------------------------------------NGADVNAVDHAGMTP 83
Query: 349 LHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARN 407
L +A + V +L+K+GADVN D +G PLH+A G++ I L+++GA+VNA++
Sbjct: 84 LRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143
Query: 408 KYAKTPLHIAVEQKNMSALNYLLEH 432
K+ KT I+++ N L +
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKL 168
Score = 128 bits (325), Expect = 5e-35
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 48/201 (23%)
Query: 72 NAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRV 131
+ + L A+ RD V IL N A+VN ++ G TPLH+AA G+ ++V V
Sbjct: 8 HHHGSDLGKKLL-EAARAGRDDE-VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65
Query: 132 LIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKN 183
L+ +GA +H G L +A V +LL+ GAD+N + G T +A
Sbjct: 66 LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA----- 120
Query: 184 FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCK 243
GH V+++L+ GA+V+A+D+ K
Sbjct: 121 ---------------------------------AMFGHLEIVEVLLKNGADVNAQDKFGK 147
Query: 244 TALDIAVEHGHLKIVEFLLDH 264
TA DI++++G+ + E L
Sbjct: 148 TAFDISIDNGNEDLAEILQKL 168
Score = 125 bits (317), Expect = 6e-34
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 48/204 (23%)
Query: 104 ANVNIKN-KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
++ + + + L AAR G VR+L+ +GA ++ G+ LH+A V
Sbjct: 4 SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIV 63
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
+LL+ GAD+N ++ G T ++A
Sbjct: 64 EVLLKNGADVNAVDHAGMTPLRLA------------------------------------ 87
Query: 215 HLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QF 273
GH V+++L+ GA+V+A D T L +A GHL+IVE LL +GA V++ +F
Sbjct: 88 --ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 274 IHSPLHLAIEKQHIAIVQLLLRRN 297
+ ++I+ + + ++L + N
Sbjct: 146 GKTAFDISIDNGNEDLAEILQKLN 169
Score = 125 bits (316), Expect = 8e-34
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 42/195 (21%)
Query: 203 HENVKHG--GQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVE 259
H + HG L R G + V++++ GA+V+A+D T L +A +GHL+IVE
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64
Query: 260 FLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVV 318
LL +GA V+++ +PL LA H+ IV++LL+
Sbjct: 65 VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK----------------------- 101
Query: 319 QRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQG 378
+GA+VN D E TPLH+A + V +L+K+GADVN D G
Sbjct: 102 ---------------NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 379 QMPLHIAVQNGYVAI 393
+ I++ NG +
Sbjct: 147 KTAFDISIDNGNEDL 161
Score = 124 bits (314), Expect = 2e-33
Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 11/169 (6%)
Query: 34 RGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
RG++ + D L AA VR+L+ DVNA D G T LH +A+
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLH-LAAFNGHL 60
Query: 93 PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
VE+L N A+VN + G TPL +AA G+ ++V VL+ +GA + +G+ LH+
Sbjct: 61 EI-VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHL 119
Query: 153 A--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKY 193
A V +LL+ GAD+N ++ FGKTAF ++ + N E+ K
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 122 bits (309), Expect = 7e-33
Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
HG+++ L A + L+ +GA V+A G PL++A +
Sbjct: 7 HHHHGSDLG-------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGH 59
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+ D G T L LA ++ I+E LL N AD+NA + +G+T
Sbjct: 60 LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM----EGHT 115
Query: 516 PLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
PLHLA + ++ LL D++ +DK G TA
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD 151
Score = 107 bits (271), Expect = 2e-27
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 9/156 (5%)
Query: 3 ADVNATN-KEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-I 58
+ + + + +A + + ++L GA++N D G + LH+AA +
Sbjct: 4 SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAED---ASGWTPLHLAAFNGHL 60
Query: 59 RLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLH 118
+V +LL+ DVNAVD+ G T L +A++ VE+L N A+VN + EG TPLH
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLR-LAALFGHLEI-VEVLLKNGADVNANDMEGHTPLH 118
Query: 119 IAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAV 154
+AA G+ ++V VL+ +GA ++ G A +++
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 138 bits (350), Expect = 2e-38
Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 4/174 (2%)
Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
+ E I + + ADV ++ + P A +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQAL 60
Query: 395 NLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR-TQLGKDPLYIAVEM 453
+ + +V+A ++ +T L + + L E GA +D R + G L++A
Sbjct: 61 SQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120
Query: 454 HNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKII 507
+VE L++ A++ D+ G T L LA +I + I + +
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174
Score = 133 bits (336), Expect = 2e-36
Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 11/164 (6%)
Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
+ + H ++ ++ T P ++ + L
Sbjct: 17 EYLIEWKDGHSPSWVPSS---YIAADVVSEYET---PWWTAARKADEQAL---SQLLEDR 67
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID-NQGQMPLHIAVQNGYVAIPN 395
+V+ D+ +T L V LL + GAD++ D G LH+A +
Sbjct: 68 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVE 127
Query: 396 -LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
L+ GA++ ++ T L +A E + ++ G ++
Sbjct: 128 ALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171
Score = 127 bits (321), Expect = 2e-34
Identities = 35/177 (19%), Positives = 65/177 (36%), Gaps = 8/177 (4%)
Query: 299 NNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCW 358
N I + + + ++ + Y A+V E +TP A
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDG--HSPSWVPSSYIAADVV---SEYETPWWTAARKADE 57
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARN-KYAKTPLHI 416
A+S L+ DV+ +D G+ L G L GA+++ R+ + T LH+
Sbjct: 58 QALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 417 AVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
A + L+E GA ++ + G L +A E+ + ++F +
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 120 bits (303), Expect = 6e-32
Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 7/152 (4%)
Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
+ I + + + A V + + P + A + +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQAL 60
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
QLL+ +V++ D+ GRT L + + + L AD++ + + G G T LH+
Sbjct: 61 SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG---GLTALHM 116
Query: 520 AVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
A V+ L++ D++V+D+ G TAL
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALE 148
Score = 119 bits (300), Expect = 2e-31
Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 63/227 (27%)
Query: 210 GQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACV 268
G + + ++GH + A+V ++ +T A + + LL V
Sbjct: 14 GAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLL-EDRDV 69
Query: 269 DSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTM 327
D++ + + L V+LL
Sbjct: 70 DAVDENGRTALLFVAGLGSDKCVRLLAE-------------------------------- 97
Query: 328 FKTLLYHGANVNVKDDEN-KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAV 386
GA+++ +D T LH+A + V LV+ GAD+ V D +G L +A
Sbjct: 98 ------AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151
Query: 387 QNGYVAI-PNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
+ N ++ G + +N L
Sbjct: 152 EILKTTPKGNPMQFGRRIGL-----------------EKVINVLEGQ 181
Score = 118 bits (298), Expect = 4e-31
Identities = 30/203 (14%), Positives = 63/203 (31%), Gaps = 32/203 (15%)
Query: 100 KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI--- 156
+ N+ + EG I + G+ A + A
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADE 57
Query: 157 ----LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQL 212
L + D++ + G+TA + + + L + G +++ GG
Sbjct: 58 QALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-----HRDMRGGLT 112
Query: 213 LLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL 271
LH+ V+ ++E GA++ +D+ TAL++A E + G +
Sbjct: 113 ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG-- 170
Query: 272 QFIHSPLHLAIEKQHIAIVQLLL 294
++ +L
Sbjct: 171 --------------LEKVINVLE 179
Score = 117 bits (296), Expect = 7e-31
Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLV 61
+ T EG + +P + A++ + ++ AA K + +
Sbjct: 5 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQAL 60
Query: 62 RLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKN-KEGDTPLHIA 120
LLE + DV+AVD G T L + D V +L A+++ ++ + G T LH+A
Sbjct: 61 SQLLE-DRDVDAVDENGRTALL-FVAGLGSDKC-VRLLAEAGADLDHRDMRGGLTALHMA 117
Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVEN 168
A ++V L++ GA E ++ +G AL +A G ++ G I +E
Sbjct: 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 133 bits (338), Expect = 5e-37
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
L A + + + LL NN+N+N + + L ++ N + + LL GA
Sbjct: 8 ELASAAARGDLEQLTSLL---QNNVNVNAQNGFGRTALQVMKLG---NPEIARRLLLRGA 61
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN- 395
N ++KD +H A + D + L++ ADVN+ DN+G +PLH+A + G++ +
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 396 LIRHGA-NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
L++H A NV RN T +A ++ + +GA
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 131 bits (333), Expect = 3e-36
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 1/160 (0%)
Query: 342 DDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGA 401
+ L A + ++ L+++ +VN + G+ L + L+ GA
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGA 61
Query: 402 NVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQ 461
N + +++ +H A + L LLE A V+ G PL++A + +L +VE
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 462 LLKFKA-NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
L+K A NV + G T LA ++ + N A
Sbjct: 122 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 125 bits (317), Expect = 5e-34
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 374 IDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
+ L A G + L+++ NVNA+N + +T L + N LL
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR 59
Query: 433 GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAIL 492
GA D + + G ++ A L ++ LL+F+A+VN D G LHLA K ++ ++
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 493 ECLLVNKA-DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
E L+ + A ++ + KG T LA V++ +
Sbjct: 120 EFLVKHTASNVGHRNH----KGDTACDLARLYGRNEVVSLMQAN 159
Score = 117 bits (297), Expect = 3e-31
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 44 DDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTN 102
+ + L AA + + + LL+ NV+VNA + G T L V + + L
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPE--IARRLLLR 59
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
AN ++K++ G +H AAR G ++ L++ A ++++G LH+A V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 155 GILLRKGA-DINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
L++ A ++ N+ G TA +A + L G
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
Score = 115 bits (290), Expect = 3e-30
Identities = 45/260 (17%), Positives = 82/260 (31%), Gaps = 104/260 (40%)
Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFG 171
L AA G+ + + L+ + ++N +N FG
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNV-------------------------NVNAQNGFG 38
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK 231
+TA L +++ G+ + +L +
Sbjct: 39 RTA---------------------------------------LQVMKLGNPEIARRLLLR 59
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIV 290
GAN KD+ + A G L ++ LL+ A V+ + PLHLA ++ H+ +V
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA-NVNVKDDENKTPL 349
+ L++ H A NV ++ + T
Sbjct: 120 EFLVK--------------------------------------HTASNVGHRNHKGDTAC 141
Query: 350 HIAIESQCWDAVSLLVKHGA 369
+A + VSL+ +GA
Sbjct: 142 DLARLYGRNEVVSLMQANGA 161
Score = 110 bits (278), Expect = 1e-28
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 16/147 (10%)
Query: 27 IAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHT 84
L + N+N + G++ L + N + R LL + + D G V+H
Sbjct: 20 QLTSLLQNNVNVNAQN---GFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIH- 75
Query: 85 VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHT-ECKN 143
A+ T ++ L +A+VNI++ EG+ PLH+AA+ G+ ++V L+ H A +N
Sbjct: 76 DAARAGFLDT-LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN 134
Query: 144 HQGYNALHVA--------VGILLRKGA 162
H+G A +A V ++ GA
Sbjct: 135 HKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 102 bits (257), Expect = 1e-25
Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
+VNA N G T Q IA+ L RGAN + D G + +H AA +
Sbjct: 29 VNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKD---RTGFAVIHDAARAGFLD 84
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRA-NVNIKNKEGDTPLH 118
++ LLE+ DVN DN GN LH +A+ + VE L + A NV +N +GDT
Sbjct: 85 TLQTLLEFQADVNIEDNEGNLPLH-LAAKEGHLRV-VEFLVKHTASNVGHRNHKGDTACD 142
Query: 119 IAARTGNYKMVRVLIDHGA 137
+A G ++V ++ +GA
Sbjct: 143 LARLYGRNEVVSLMQANGA 161
Score = 61.6 bits (151), Expect = 2e-11
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 476 GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
L A ++ L LL N ++NA+ G T L + N + +LL
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGF----GRTALQVMKL-GNPEIARRLLLR 59
Query: 536 NPDLDVKDKNGNTALH 551
+ D+KD+ G +H
Sbjct: 60 GANPDLKDRTGFAVIH 75
Score = 45.4 bits (109), Expect = 7e-06
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 512 KGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
L A + + LL N +++ ++ G TAL
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 43
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 130 bits (330), Expect = 1e-35
Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 16/179 (8%)
Query: 275 HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYH 334
+ + A L + + K L + L+
Sbjct: 7 YRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRN--NNDEARYKISMFLINK 64
Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVS------LLVKHGADVNVIDNQGQMPLHIAVQN 388
GA++ + E T + D + ++ GAD+ + ++ + + N
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124
Query: 389 GYVAIPN--------LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDAR 439
+V + G + ++K+ T L + AL + ++ + + +
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 121 bits (306), Expect = 3e-32
Identities = 22/178 (12%), Positives = 45/178 (25%), Gaps = 19/178 (10%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENK---TPLHIAIESQCWDAVSLLVKHGA 369
+ F L G ++ L + + L+ GA
Sbjct: 9 TVSAAAMLG--TYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66
Query: 370 DVNVIDNQGQMPLHIAVQNGYVAIPN-------LIRHGANVNARNKYAKTPLHIAVEQKN 422
D+ +G Q G I + GA++ A K K + +
Sbjct: 67 DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126
Query: 423 MSALN-------YLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSD 473
+ + G Q+ + + G L ++ + + N +
Sbjct: 127 VDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 120 bits (303), Expect = 6e-32
Identities = 23/181 (12%), Positives = 49/181 (27%), Gaps = 19/181 (10%)
Query: 244 TALDIAVEHGHLKIVEFLLDHGACVDSLQ----FIHSPLHLAIEKQHIAIVQLLLRRNNN 299
+ A G + L + G ++ L ++ I L+ N
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLI---NK 64
Query: 300 NININTKGPTNKAPLHLVVQRKSWN----TTMFKTLLYHGANVNVKDDENKTPLHIAIES 355
+I ++ + Q + T + K L GA++ K + I +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124
Query: 356 QCWDAVS-------LLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARN 407
D + + G + + D G L + + + N +
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Query: 408 K 408
Sbjct: 185 N 185
Score = 118 bits (297), Expect = 4e-31
Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 19/180 (10%)
Query: 344 ENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN----GYVAIPN-LIR 398
+ A ++ L + G + L+ ++N I LI
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKE-SVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 399 HGANVNARNKYAKTPLHIAVEQKNMSALN------YLLEHGAQVDARTQLGKDPLYIAVE 452
GA++ +R K T + LE GA + A + K ++ +
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123
Query: 453 MHNLSIVEQ-------LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAK 505
+ + E + + D++G T L + Q L+ + N K
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 109 bits (275), Expect = 5e-28
Identities = 26/187 (13%), Positives = 51/187 (27%), Gaps = 18/187 (9%)
Query: 205 NVKHGGQLLLHLVRNGHQNAVKLILEKGANV---HAKDQLCKTALDIAVEHGHLKIVEFL 261
N + + G + EKG K + L + KI FL
Sbjct: 2 NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61
Query: 262 LDHGACVDSLQFI-HSPLHLAIEKQH------IAIVQLLLRRNNNNININTKGPTNKAPL 314
++ GA + S + + + ++ L +I K +
Sbjct: 62 INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL---EKGADITALYKPYKIVV 118
Query: 315 HLVVQRKSWNTTMFKT-----LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGA 369
+ + G + +KD T L Q A+ ++ +
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178
Query: 370 DVNVIDN 376
N+ +N
Sbjct: 179 KYNLKEN 185
Score = 104 bits (262), Expect = 3e-26
Identities = 30/230 (13%), Positives = 55/230 (23%), Gaps = 68/230 (29%)
Query: 50 LHIAATK-NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTA--VEILKTNRANV 106
+ AA L E + L + +L+ V + L A++
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYEDKE-SVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINV 166
+ KEG T + G + I L KGADI
Sbjct: 69 KSRTKEGTTLFFPLFQGGGNDITGTTE-------------------LCKIFLEKGADITA 109
Query: 167 ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVK 226
K + + N + +
Sbjct: 110 LYKPYKIV--------------------------------------VFKNIFNYFVDENE 131
Query: 227 -------LILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD 269
+ + G + KD+ TAL+ ++ + D+ +
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
Score = 103 bits (259), Expect = 7e-26
Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 17/156 (10%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-- 57
D + + + + ++ I+ L +GA+I +G +
Sbjct: 32 DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT---KEGTTLFFPLFQGGGN 88
Query: 58 -----IRLVRLLLEYNVDVNAVDNLGNTVLHTVA-----SIKTRDPTAVEILKTNRANVN 107
L ++ LE D+ A+ V+ P I + +
Sbjct: 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148
Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKN 143
IK+K G T L R ++++ D+ K
Sbjct: 149 IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 96.3 bits (240), Expect = 3e-23
Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 22/164 (13%)
Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV---DARTQLGKDPLYIAVEMHNLSIVE 460
NA ++Y + A L E G + ++ + D L + I
Sbjct: 2 NAMSEY--RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59
Query: 461 QLLKFKANVNSSDQFGRTVLHLAVK------IQNVAILECLLVNKADINAKIISGIWKGY 514
L+ A++ S + G T+ + + + L ADI A
Sbjct: 60 FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK----PYK 115
Query: 515 TPLHLAVESNNEAVINK-------LLDYNPDLDVKDKNGNTALH 551
+ + + L +KDK G TAL
Sbjct: 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159
Score = 69.7 bits (171), Expect = 5e-14
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 21/125 (16%)
Query: 3 ADVNATNKEGITLFQQAI------VSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAA 54
AD+ + KEG TLF ++ T + K+ E+GA+I K +
Sbjct: 66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY---KPYKIVVFKNI 122
Query: 55 TKN-------IRLVRLLL-EYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANV 106
I L +L+ + + + D G T L V + + P A+++++
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK--RCQKPIALKMMEDYIKKY 180
Query: 107 NIKNK 111
N+K
Sbjct: 181 NLKEN 185
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 128 bits (324), Expect = 3e-35
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
G + + +T LHIA +V L+++G+D NV D+ G PLH A +G++ +
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 395 N-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEM 453
L++H A VN +PLH A + ++ + LL +GA +A G P+ +
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 454 HNLSIVEQLLKFKANVNS 471
S++ K +++ S
Sbjct: 120 SMKSLLLLPEKNESSSAS 137
Score = 115 bits (292), Expect = 8e-31
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 368 GADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
G D +++G+ LHIA G + L+++G++ N ++ TPLH A ++ +
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
LL+H A V+ PL+ A + ++ IV+ LL + A+ N+ + FG +
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 487 QNVAILECLLVNKADINA 504
++L L +A
Sbjct: 120 SMKSLLL-LPEKNESSSA 136
Score = 110 bits (278), Expect = 6e-29
Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 40/175 (22%)
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIV 290
G + + +T L IA G + VE+LL +G+ + +PLH A H+ +V
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
+LLL+ H A VN +N +PLH
Sbjct: 60 ELLLQ--------------------------------------HKALVNTTGYQNDSPLH 81
Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNA 405
A ++ D V LL+ +GA N ++ G P+ ++ L + +A
Sbjct: 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSA 136
Score = 105 bits (265), Expect = 4e-27
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 35 GANIN-DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
G + + G++ LHIA+ K I V LL+ D N D+ G T LH A
Sbjct: 1 GIDPFTN---HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLH-EACNHGHL 56
Query: 93 PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
VE+L ++A VN + D+PLH AA+ G+ +V++L+ +GA N G +
Sbjct: 57 KV-VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Query: 153 A-------VGILLRKGADIN 165
+ +L K +
Sbjct: 116 TDDESMKSLLLLPEKNESSS 135
Score = 104 bits (261), Expect = 1e-26
Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 35/165 (21%)
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGAD 163
+ N G+T LHIA+ G+ V L+ +G+ D
Sbjct: 2 IDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGS-------------------------D 35
Query: 164 INVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHL-VRNGH 221
NV+++ G T A + +EL L++ V N + LH +NGH
Sbjct: 36 PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-------NTTGYQNDSPLHDAAKNGH 88
Query: 222 QNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
+ VKL+L GA+ +A + +D + ++ + +
Sbjct: 89 VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133
Score = 102 bits (257), Expect = 5e-26
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
G + N +T LHIA + ++ ++ YLL++G+ + + G PL+ A +L +V
Sbjct: 1 GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHL 519
E LL+ KA VN++ + LH A K +V I++ LL A NA I G P+
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI----FGLRPVDY 115
Query: 520 AVESNNEAVINKLLD 534
+ + ++++ L +
Sbjct: 116 TDDESMKSLL-LLPE 129
Score = 101 bits (255), Expect = 9e-26
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 40/168 (23%)
Query: 205 NVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLD 263
H G+ LLH+ G +V+ +L+ G++ + KD T L A HGHLK+VE LL
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 264 HGACVDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKS 322
H A V++ + SPLH A + H+ IV+LLL
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS--------------------------- 97
Query: 323 WNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGAD 370
+GA+ N + P+ + + L K+ +
Sbjct: 98 -----------YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 95.2 bits (238), Expect = 2e-23
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
D TN G TL A + P + L + G++ N D G + LH A ++
Sbjct: 2 IDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD---HAGWTPLHEACNHGHLK 57
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
+V LLL++ VN ++ LH A+ V++L + A+ N N G P+
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLH-DAAKNGHVDI-VKLLLSYGASRNAVNIFGLRPVDY 115
Query: 120 AARTGNYKMVRVLIDHGAHT 139
++ + + + +
Sbjct: 116 TDDESMKSLLLLPEKNESSS 135
Score = 89.0 bits (222), Expect = 2e-21
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
G+ L+IA ++ VE LL+ ++ N D G T LH A ++ ++E LL +KA +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
N + +PLH A ++ + ++ LL Y + + G +
Sbjct: 70 NTTGY----QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114
Score = 48.6 bits (117), Expect = 4e-07
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
D +G T LH+A + + LL D +VKD G T LH
Sbjct: 2 IDPFTNH-----RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLH 48
Score = 48.2 bits (116), Expect = 5e-07
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRL 60
A VN T + + A + I KLL GA+ N + G + ++++
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN---IFGLRPVDYTDDESMKS 123
Query: 61 VRLLLEYNVDVNA 73
+ LL E N +A
Sbjct: 124 LLLLPEKNESSSA 136
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 127 bits (323), Expect = 5e-35
Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 5/156 (3%)
Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
L A + + V+ LL + ++ + K L +++ +T + LL GA
Sbjct: 5 RLSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMMFG---STAIALELLKQGA 59
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNL 396
+ NV+D +P+H A + D + +LV+HGADVNV D G +P+H+AVQ G+ A+ +
Sbjct: 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
+ ++++ R+ TPL +A+++ ++ L H
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 127 bits (321), Expect = 1e-34
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 4/152 (2%)
Query: 347 TPLHIAIESQCWDAV-SLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
L A V LL + + ++ G+ L + G AI L++ GA+ N
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPN 62
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
++ +P+H A + L L+EHGA V+ G P+++AV+ + ++V L
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
+++++ D G T L LA++ +++ L
Sbjct: 123 -ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 121 bits (307), Expect = 1e-32
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Query: 331 LLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
L + + + KT L + + L+K GA NV D G P+H A + G+
Sbjct: 22 LHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGASPNVQDTSGTSPVHDAARTGF 80
Query: 391 VAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYI 449
+ L+ HGA+VN + P+H+AV++ + + +++L + + R G PL +
Sbjct: 81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLEL 139
Query: 450 AVEMHNLSIVEQLLK 464
A++ +V+ L
Sbjct: 140 ALQRGAQDLVDILQG 154
Score = 119 bits (302), Expect = 6e-32
Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 8/156 (5%)
Query: 381 PLHIAVQNGYVAIPN--LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
L A G V L R + +A N++ KT L + + + + LL+ GA +
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV 63
Query: 439 RTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVN 498
+ G P++ A L ++ L++ A+VN D G +HLAV+ + A++ L
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAA 122
Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLLD 534
++D++ + +G TPL LA++ + +++ L
Sbjct: 123 ESDLHRRDA----RGLTPLELALQRGAQDLVDILQG 154
Score = 115 bits (291), Expect = 1e-30
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 113 GDTPLHIAARTGNYKMVRVLID-HGAHTECKNHQGYNALHVA-------VGILLRKGADI 164
L AA G+ + VR L+ H + N G AL V LL++GA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVK-HGGQLLLHL-VRNGHQ 222
NV++ G + A +++ +++G +V NV G L +HL V+ GH
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-------NVPDGTGALPIHLAVQEGHT 114
Query: 223 NAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
V L +++H +D T L++A++ G +V+ L H
Sbjct: 115 AVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 109 bits (274), Expect = 3e-28
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 412 TPLHIAVEQKNMSALNYLLE-HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
L A + ++ + LL DA + GK L + + +I +LLK A+ N
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASPN 62
Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
D G + +H A + + L+ L+ + AD+N G P+HLAV+ + AV+
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG----TGALPIHLAVQEGHTAVV- 117
Query: 531 KLLDYNPDLDVKDKNGNTALH 551
L DL +D G T L
Sbjct: 118 SFLAAESDLHRRDARGLTPLE 138
Score = 105 bits (264), Expect = 7e-27
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 50 LHIAATK-NIRLVRLLLEYN-VDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVN 107
L AA + +++ VR LL V +A++ G T L V + L A+ N
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTA--IALELLKQGASPN 62
Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI-------LLRK 160
+++ G +P+H AARTG ++VL++HGA + G +H+AV L
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 161 GADINVENNFGKTAFQMA 178
+D++ + G T ++A
Sbjct: 123 ESDLHRRDARGLTPLELA 140
Score = 99.4 bits (249), Expect = 9e-25
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
+A N+ G T Q + T IA L ++GA+ N D G S +H AA +
Sbjct: 27 VHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQD---TSGTSPVHDAARTGFLD 82
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHI 119
+++L+E+ DVN D G +H +A + V L ++++ ++ G TPL +
Sbjct: 83 TLKVLVEHGADVNVPDGTGALPIH-LAVQEGHTAV-VSFLA-AESDLHRRDARGLTPLEL 139
Query: 120 AARTGNYKMVRVLIDH 135
A + G +V +L H
Sbjct: 140 ALQRGAQDLVDILQGH 155
Score = 98.6 bits (247), Expect = 2e-24
Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 27 IAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHT 84
+ +LL + + + GK+ L + + + LL+ N D G + +H
Sbjct: 18 VRRLLHRELVHPDALN---RFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVH- 73
Query: 85 VASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNH 144
A+ T +++L + A+VN+ + G P+H+A + G+ +V L + ++
Sbjct: 74 DAARTGFLDT-LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDA 131
Query: 145 QGYNALHVA 153
+G L +A
Sbjct: 132 RGLTPLELA 140
Score = 84.8 bits (211), Expect = 1e-19
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 443 GKDPLYIAVEMHNLSIVEQLL-KFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
D L A ++ V +LL + + ++ ++FG+T L + + + AI LL A
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60
Query: 502 INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
N + G +P+H A + + L+++ D++V D G +H
Sbjct: 61 PNVQDT----SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH 106
Score = 43.2 bits (103), Expect = 3e-05
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 512 KGYTPLHLAVESNNEAVINKLLDYNP-DLDVKDKNGNTALH 551
+ L A + + +LL D ++ G TAL
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ 41
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 131 bits (331), Expect = 7e-35
Identities = 55/270 (20%), Positives = 99/270 (36%), Gaps = 59/270 (21%)
Query: 334 HGANVNVKDDENKTPLHIAIESQCWDAVSLLV-------KHGADVNVID-NQGQMPLHIA 385
A ++ + A+ + L+ K D D G+ L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 386 VQNGYV----AIPNLIRHGA-----------NVNARNKYAKTPLHIAVEQKNMSALNYLL 430
+ N + I L+ + +T LHIA+E++NM+ + L+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 431 EHGAQVDART--------------QLGKDPLYIAVEMHNLSIVEQLLK---FKANVNSSD 473
E+GA V A G+ PL +A + L+IV+ LL+ A++++ D
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181
Query: 474 QFGRTVLHLAVKIQN---------VAILECLLVNKADINAKIISGIWK---GYTPLHLAV 521
G TVLH V++ + ++ +L+ A ++ + G TPL LA
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241
Query: 522 ESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
S V+ +L ++ + H
Sbjct: 242 SSGKIGVLAYILQ-------REIHEPECRH 264
Score = 125 bits (315), Expect = 1e-32
Identities = 48/292 (16%), Positives = 92/292 (31%), Gaps = 74/292 (25%)
Query: 207 KHGGQLLLHLVRNGHQNAVKLILE-------KGANVHAKD-QLCKTALDIAV---EHGHL 255
+ + + V + ++ +L + + KD + KT L A+ +G
Sbjct: 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQN 70
Query: 256 KIVEFLLDHGACVDSLQFI------------HSPLHLAIEKQHIAIVQLLLRRNNNNINI 303
+ LLD DSL+ + LH+AIE++++ +V LL+ N ++
Sbjct: 71 DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE---NGADV 127
Query: 304 NTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSL 363
+ + PL +A + V
Sbjct: 128 QAAA---------------------NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166
Query: 364 LVKHG---ADVNVIDNQGQMPLHIAVQNGYVAIPN-----------------LIRHGANV 403
L+++ AD++ D+ G LH V+ + N L
Sbjct: 167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE 226
Query: 404 NARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
N+ TPL +A + L Y+L+ + + A H+
Sbjct: 227 EITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAHHHH 271
Score = 123 bits (310), Expect = 7e-32
Identities = 55/325 (16%), Positives = 101/325 (31%), Gaps = 85/325 (26%)
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLD-------HGACVDSLQFIH--SPLHLA- 281
A + ++ AV + + +E LL + + L A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 282 --IEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVN 339
+ + LLL ++ + A+
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLK---------------------------QFVNASYT 95
Query: 340 VKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDN--------------QGQMPLHIA 385
+ +T LHIAIE + V+LLV++GADV N G++PL +A
Sbjct: 96 DSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA 155
Query: 386 VQNGYVAIPN-LIRHG---ANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQ 441
+AI L+++ A+++AR+ T LH VE + + N
Sbjct: 156 ACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNT------------- 202
Query: 442 LGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKAD 501
++ L + +L +++ G T L LA + +L +L +
Sbjct: 203 ----KFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258
Query: 502 INAKIISGIWKGYTPLHLAVESNNE 526
H A ++
Sbjct: 259 -----------EPECRHAAAHHHHH 272
Score = 118 bits (298), Expect = 2e-30
Identities = 48/345 (13%), Positives = 98/345 (28%), Gaps = 107/345 (31%)
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGA 162
A + A N + + L+ + ++
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPF------------------LQRSKKRLT 44
Query: 163 DINV-ENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGH 221
D + GKT A + + NG
Sbjct: 45 DSEFKDPETGKTCLLKA-----------------------------------MLNLHNGQ 69
Query: 222 QNAVKLILEKGANVHAKDQLC-----------KTALDIAVEHGHLKIVEFLLDHGACVD- 269
+ + L+L+ + Q +TAL IA+E ++ +V L+++GA V
Sbjct: 70 NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129
Query: 270 --------------SLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLH 315
F PL LA +AIV+ LL+ + +I+ + LH
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189
Query: 316 LVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
+V+ + + T ++ ++ + L + +
Sbjct: 190 ALVE-------------------VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITN 230
Query: 376 NQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVE 419
+G PL +A +G + + +++ + H A
Sbjct: 231 RKGLTPLALAASSGKIGVLAYILQREIHEP-------ECRHAAAH 268
Score = 111 bits (279), Expect = 9e-28
Identities = 48/320 (15%), Positives = 86/320 (26%), Gaps = 88/320 (27%)
Query: 3 ADVNATNKEGIT-LFQQA------IVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAAT 55
A +F + S P + +R + P+ GK+CL A
Sbjct: 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63
Query: 56 K----NIRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNK 111
+ LLL+ +++ N A+
Sbjct: 64 NLHNGQNDTIALLLDVARKTDSLKQFVN------------------------ASYTDSYY 99
Query: 112 EGDTPLHIAARTGNYKMVRVLIDHGAHTECKN--------------HQGYNALHVA---- 153
+G T LHIA N +V +L+++GA + + G L +A
Sbjct: 100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 154 ----VGILLRKG---ADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENV 206
V LL+ ADI+ ++ G T V +
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHAL----------------------VEVADN 197
Query: 207 KHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
+ + N + ++ T L +A G + ++ ++L
Sbjct: 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257
Query: 267 CVDSLQFIHSPLHLAIEKQH 286
H A H
Sbjct: 258 HEP------ECRHAAAHHHH 271
Score = 89.8 bits (223), Expect = 3e-20
Identities = 41/184 (22%), Positives = 68/184 (36%), Gaps = 38/184 (20%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN-------------DPFPDDGKS 48
+A + +G T AI + LL E GA++ P G+
Sbjct: 91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGEL 150
Query: 49 CLHIAATKN-IRLVRLLLE---YNVDVNAVDNLGNTVLHTVASIKTRDPTAVEI------ 98
L +AA N + +V+ LL+ D++A D++GNTVLH + + +
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN 210
Query: 99 --------LKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNAL 150
L I N++G TPL +AA +G ++ ++ H
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECR 263
Query: 151 HVAV 154
H A
Sbjct: 264 HAAA 267
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 130 bits (328), Expect = 5e-34
Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 27/249 (10%)
Query: 297 NNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVK-DDENKTPLHIAIES 355
NN++ N N++G ++ V S + N+N+ D+ TPLH
Sbjct: 83 NNDSSNRNSEGGSSNQQQQHVS-FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI 141
Query: 356 QCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNG----YVAIPNLIRH-GANVNARNKYA 410
+ V LVKHG++ DN G+ L AV++ L+ + + +
Sbjct: 142 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN 201
Query: 411 KTPLHIAVEQKNMSA------------LNYLLEHGAQVDARTQLGKDPLYIA----VEMH 454
+T LH + M+ + ++++ + K+ +
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261
Query: 455 NLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGY 514
L ++ +N+ D G T L++A ++ N++I++ LL AD G
Sbjct: 262 ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK----SGL 317
Query: 515 TPLHLAVES 523
P+
Sbjct: 318 RPVDFGAGL 326
Score = 115 bits (290), Expect = 9e-29
Identities = 52/374 (13%), Positives = 101/374 (27%), Gaps = 82/374 (21%)
Query: 16 FQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVD 75
+SS I K L N N+ + + + L + + N+
Sbjct: 34 LTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEG 93
Query: 76 NLGNTVLHTVASIKTRDPTAVEILKTNRANVNIK-NKEGDTPLHIAARTGNYKMVRVLID 134
N S + + + N+NI ++ G+TPLH N ++V+ L+
Sbjct: 94 GSSNQQQQ-HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 152
Query: 135 HGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYG 194
HG+ + +N G++ A + N
Sbjct: 153 HGS-------------------------NRLYGDNMGESCLVKAVKSVN----------- 176
Query: 195 VNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGH 254
++ L+ + +D + +T L +
Sbjct: 177 -------NYD----------------SGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 213
Query: 255 LKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPL 314
+ A K ++ I+ + + N + P
Sbjct: 214 MT---------------------GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252
Query: 315 HLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVI 374
+RK +N +D T L+IA V L+ +GAD +
Sbjct: 253 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312
Query: 375 DNQGQMPLHIAVQN 388
+ G P+
Sbjct: 313 NKSGLRPVDFGAGL 326
Score = 115 bits (289), Expect = 1e-28
Identities = 42/291 (14%), Positives = 90/291 (30%), Gaps = 29/291 (9%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIR-LV 61
+ N + Q+ + + L +N N + H++ ++ +
Sbjct: 54 VNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVN 113
Query: 62 RLLLEYNVDVNA-VDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
+++N VD GNT LH + V+ L + +N + G++ L A
Sbjct: 114 DAFPNTQLNLNIPVDEHGNTPLH-WLTSIANLEL-VKHLVKHGSNRLYGDNMGESCLVKA 171
Query: 121 ARTGNYK----MVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGKTAFQ 176
++ N +L ++ LH + G +
Sbjct: 172 VKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY------- 224
Query: 177 MAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEK---GA 233
+++ + + V + + ++ + K
Sbjct: 225 ----------LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN 274
Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIE 283
++A+D T L+IA G++ IV+ LLD+GA P+
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
Score = 111 bits (278), Expect = 4e-27
Identities = 37/278 (13%), Positives = 90/278 (32%), Gaps = 48/278 (17%)
Query: 290 VQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPL 349
++++ + +N N + +A L ++ + L +N N + +
Sbjct: 43 LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTS--LNNDSSNRNSEGGSSNQQQ 100
Query: 350 -HIAIESQCWDAVSLLVKHGADVNV-IDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNAR 406
H++ +S + ++N+ +D G PLH + + L++HG+N
Sbjct: 101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG 160
Query: 407 NKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKF- 465
+ ++ L AV+ N ++ E LL +
Sbjct: 161 DNMGESCLVKAVKSVNN------------------------------YDSGTFEALLDYL 190
Query: 466 KANVNSSDQFGRTVLHLAVKIQNV------------AILECLLVNKADINAKIISGIWKG 513
+ D RT+LH + + ++ ++ + +
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250
Query: 514 YTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+ + + ++ L+ +D NG+T L+
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 288
Score = 92.8 bits (230), Expect = 7e-21
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 20/173 (11%)
Query: 3 ADVNATNKEGITLFQQAIVS----SQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNI 58
++ + G + +A+ S LL + ++ LH +
Sbjct: 155 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED-SMNRTILHHIIITSG 213
Query: 59 R-------------LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTA--VEILKTNR 103
L+ +++ + + +D +++
Sbjct: 214 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGI 156
+N ++ GDT L+IAAR GN +V L+D+GA N G + G+
Sbjct: 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326
Score = 33.8 bits (77), Expect = 0.11
Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA 54
+NA + G T A I L + GA+ G + A
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA-NKSGLRPVDFGA 324
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 124 bits (315), Expect = 8e-34
Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 8/151 (5%)
Query: 334 HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI 393
A +++ L A + V L++ GA+ N ++ G+ P+ + +
Sbjct: 3 PAAGSSMEPSA--DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVA 60
Query: 394 PNLIRHGANVNARNKYAKT-PLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
L+ HGA N + T P+H A + + L L GA++D R G+ P+ +A E
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
Query: 453 MHNLSIVEQLLKFKANVNSSDQFGRTVLHLA 483
+ + + L G +
Sbjct: 121 LGHRDVARYLRAAAGGTR-----GSNHARID 146
Score = 122 bits (310), Expect = 3e-33
Identities = 31/195 (15%), Positives = 55/195 (28%), Gaps = 50/195 (25%)
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-------VGI 156
+ L AA G + VR L++ GA+ N G + V +
Sbjct: 3 PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAEL 62
Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL 216
LL GA+ N + T +H
Sbjct: 63 LLLHGAEPNCADPATLTR--------------------------------------PVHD 84
Query: 217 -VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH 275
R G + + ++ GA + +D + +D+A E GH + +L
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR----GS 140
Query: 276 SPLHLAIEKQHIAIV 290
+ + + I
Sbjct: 141 NHARIDAAEGPSDIP 155
Score = 121 bits (307), Expect = 9e-33
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 14/166 (8%)
Query: 365 VKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNM 423
++ A + L A G V L+ GAN NA N Y + P+ + + +
Sbjct: 1 MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57
Query: 424 SALNYLLEHGAQVDARTQLGK-DPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
LL HGA+ + P++ A L + L + A ++ D +GR + L
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117
Query: 483 AVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAV 528
A ++ + + L + +
Sbjct: 118 AEELGHRDVARYLRAAAGGTRGS---------NHARIDAAEGPSDI 154
Score = 119 bits (302), Expect = 5e-32
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 8/134 (5%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQ-MPLHIAVQ 387
+ LL GAN N + + P+ + + LL+ HGA+ N D P+H A +
Sbjct: 29 RALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCADPATLTRPVHDAAR 87
Query: 388 NGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDP 446
G++ L R GA ++ R+ + + P+ +A E + YL G +
Sbjct: 88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNH 142
Query: 447 LYIAVEMHNLSIVE 460
I I +
Sbjct: 143 ARIDAAEGPSDIPD 156
Score = 109 bits (274), Expect = 3e-28
Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 8/156 (5%)
Query: 397 IRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNL 456
+ A + L A + + + LLE GA +A G+ P+ + + M +
Sbjct: 1 MEPAAGSSMEPS--ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57
Query: 457 SIVEQLLKFKANVNSSDQFGRTV-LHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
+ E LL A N +D T +H A + + L L A ++ + G
Sbjct: 58 RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA----WGRL 113
Query: 516 PLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
P+ LA E + V L + A
Sbjct: 114 PVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 102 bits (258), Expect = 6e-26
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 4/151 (2%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLV 61
+ ++ + A + + L E GAN N P G+ + + + R+
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMMMGSARVA 60
Query: 62 RLLLEYNVDVNAVDNLGNTV-LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIA 120
LLL + + N D T +H A+ + T + +L A +++++ G P+ +A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVH-DAAREGFLDT-LVVLHRAGARLDVRDAWGRLPVDLA 118
Query: 121 ARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
G+ + R L T NH +A
Sbjct: 119 EELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 123 bits (312), Expect = 1e-33
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 1/135 (0%)
Query: 335 GANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIP 394
+++ + L A + V L++ GAD N ++ G+ P+ + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAE 61
Query: 395 NLIRHGANVNARNKYAKT-PLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEM 453
L+ HGA N + T P+H A + + L L GA++D G+ P+ +A E
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121
Query: 454 HNLSIVEQLLKFKAN 468
+ I L +
Sbjct: 122 GHRDIARYLHAATGD 136
Score = 123 bits (311), Expect = 2e-33
Identities = 32/171 (18%), Positives = 52/171 (30%), Gaps = 46/171 (26%)
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA-------VGI 156
+++ D L AA G + VR L++ GA N G + V +
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAEL 62
Query: 157 LLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL 216
LL GA+ N + T +H
Sbjct: 63 LLLHGAEPNCADPATLTR--------------------------------------PVHD 84
Query: 217 -VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
R G + + ++ GA + D + +D+A E GH I +L
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 119 bits (301), Expect = 3e-32
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 3/136 (2%)
Query: 368 GADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
++++ L A G V L+ GA+ NA N++ + P+ + + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60
Query: 427 NYLLEHGAQVDARTQLGK-DPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVK 485
LL HGA+ + P++ A L + L + A ++ D +GR + LA +
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120
Query: 486 IQNVAILECLLVNKAD 501
+ I L D
Sbjct: 121 QGHRDIARYLHAATGD 136
Score = 104 bits (263), Expect = 8e-27
Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 4/136 (2%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVR 62
++ A Q + L E GA+ N G+ + + + ++
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMMGSAQVAE 61
Query: 63 LLLEYNVDVNAVDNLGNTV-LHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAA 121
LLL + + N D T +H A+ + T + +L A +++ + G P+ +A
Sbjct: 62 LLLLHGAEPNCADPATLTRPVH-DAAREGFLDT-LVVLHRAGARLDVCDAWGRLPVDLAE 119
Query: 122 RTGNYKMVRVLIDHGA 137
G+ + R L
Sbjct: 120 EQGHRDIARYLHAATG 135
Score = 104 bits (262), Expect = 8e-27
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 6/140 (4%)
Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
++ + L A + + + LLE GA +A + G+ P+ + + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVA 60
Query: 460 EQLLKFKANVNSSDQFGRTV-LHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
E LL A N +D T +H A + + L L A ++ G P+
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA----WGRLPVD 116
Query: 519 LAVESNNEAVINKLLDYNPD 538
LA E + + L D
Sbjct: 117 LAEEQGHRDIARYLHAATGD 136
Score = 100 bits (253), Expect = 2e-25
Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 50/174 (28%)
Query: 70 DVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMV 129
++ + + L A+ + + T V L A+ N N+ G P+ + G+ ++
Sbjct: 4 GIHMLGGSSDAGLA-TAAARGQVET-VRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 130 RVLIDHGAHTECKNHQGY-NALHVA--------VGILLRKGADINVENNFGKTAFQMAYE 180
+L+ HGA C + +H A + +L R GA ++V + +G+ +A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA-- 118
Query: 181 MKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGAN 234
GH++ + + +
Sbjct: 119 ------------------------------------EEQGHRDIARYLHAATGD 136
Score = 97.9 bits (245), Expect = 2e-24
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 8/141 (5%)
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIV 290
+H L A G ++ V LL+ GA ++L +F P+ + + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60
Query: 291 QLLLRRNNNNININTKGPTNK-APLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPL 349
+LLL + N P P+H + +T L GA ++V D + P+
Sbjct: 61 ELLL---LHGAEPNCADPATLTRPVHDAAREGFLDTL--VVLHRAGARLDVCDAWGRLPV 115
Query: 350 HIAIESQCWDAVSLLVKHGAD 370
+A E D L D
Sbjct: 116 DLAEEQGHRDIARYLHAATGD 136
Score = 48.6 bits (117), Expect = 3e-07
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 500 ADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
I+ S L A + +LL+ D + ++ G +
Sbjct: 3 PGIHMLGGSS----DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQ 50
Score = 28.9 bits (66), Expect = 2.0
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGAN 37
A ++ + G A IA+ L +
Sbjct: 102 ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 118 bits (299), Expect = 8e-32
Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 10/137 (7%)
Query: 297 NNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQ 356
+++ ++ L + + + L+ +GA+VN KD+ TPL++A
Sbjct: 8 HHHGSDLGK-------KLLEAARAGQDDEV--RILMANGADVNAKDEYGLTPLYLATAHG 58
Query: 357 CWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLH 415
+ V +L+K+GADVN +D G PLH+A G++ I L++HGA+VNA++K+ KT
Sbjct: 59 HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD 118
Query: 416 IAVEQKNMSALNYLLEH 432
I++ N L +
Sbjct: 119 ISIGNGNEDLAEILQKL 135
Score = 109 bits (275), Expect = 1e-28
Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 364 LVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKN 422
HG+D+ L A + G L+ +GA+VNA+++Y TPL++A +
Sbjct: 7 HHHHGSDLGK-------KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Query: 423 MSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHL 482
+ + LL++GA V+A +G PL++A + +L I E LLK A+VN+ D+FG+T +
Sbjct: 60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
Query: 483 AVKIQNVAILECLL 496
++ N + E L
Sbjct: 120 SIGNGNEDLAEILQ 133
Score = 105 bits (265), Expect = 4e-27
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 396 LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHN 455
HG+++ L A + L+ +GA V+A+ + G PLY+A +
Sbjct: 7 HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L IVE LLK A+VN+ D G T LHLA I ++ I E LL + AD+NA+ G T
Sbjct: 60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK----FGKT 115
Query: 516 PLHLAVESNNEAVINKLLDYN 536
+++ + NE + L N
Sbjct: 116 AFDISIGNGNEDLAEILQKLN 136
Score = 105 bits (264), Expect = 6e-27
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 49/171 (28%)
Query: 104 ANVNIKN-KEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------V 154
++ + + + L AAR G VR+L+ +GA K+ G L++A V
Sbjct: 4 SHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV 63
Query: 155 GILLRKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
+LL+ GAD+N + G T L
Sbjct: 64 EVLLKNGADVNAVDAIGFTP---------------------------------------L 84
Query: 215 HL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDH 264
HL GH +++L+ GA+V+A+D+ KTA DI++ +G+ + E L
Sbjct: 85 HLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 100 bits (251), Expect = 3e-25
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 34 RGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRD 92
RG++ + D L AA VR+L+ DVNA D G T L+ + +
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61
Query: 93 PTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
VE+L N A+VN + G TPLH+AA G+ ++ VL+ HGA ++ G A +
Sbjct: 62 --IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
Query: 153 AV 154
++
Sbjct: 120 SI 121
Score = 94.0 bits (235), Expect = 4e-23
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 40/156 (25%)
Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
L R G + V++++ GA+V+AKD+ T L +A HGHL+IVE LL +GA V+++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
+PLHLA H+ I ++LL+
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLK------------------------------------ 101
Query: 332 LYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKH 367
HGA+VN +D KT I+I + D +L K
Sbjct: 102 --HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 92.1 bits (230), Expect = 2e-22
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKI 486
++ HG+ D L A V L+ A+VN+ D++G T L+LA
Sbjct: 5 HHHHHHGS--DLGK-----KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57
Query: 487 QNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNG 546
++ I+E LL N AD+NA G +TPLHLA + + LL + D++ +DK G
Sbjct: 58 GHLEIVEVLLKNGADVNAVDAIG----FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 547 NTALH 551
TA
Sbjct: 114 KTAFD 118
Score = 89.4 bits (223), Expect = 2e-21
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 27 IAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLH 83
++L GA++N D + G + L++A + +V +LL+ DVNAVD +G T LH
Sbjct: 29 EVRILMANGADVNAKD---EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLH 85
Query: 84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDH 135
A I + E+L + A+VN ++K G T I+ GN + +L
Sbjct: 86 LAAFIGHLE--IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 45.5 bits (109), Expect = 4e-06
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IR 59
ADVNA + G T A IA++L + GA++N D GK+ I+
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD---KFGKTAFDISIGNGNED 127
Query: 60 LVRLLLEYN 68
L +L + N
Sbjct: 128 LAEILQKLN 136
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 118 bits (298), Expect = 8e-32
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
Query: 313 PLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
PLHL + K LL GA+VN KD +TPLH+A + + V LL++ GADVN
Sbjct: 5 PLHLAARNGHLEVV--KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 373 VIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLE 431
D G+ PLH+A +NG++ + L+ GA+VNA++K +TPLH+A ++ + LLE
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 432 HGA 434
GA
Sbjct: 123 AGA 125
Score = 116 bits (294), Expect = 2e-31
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
+TPLH+A + + V LL++ GADVN D G+ PLH+A +NG++ + L+ GA+VN
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
A++K +TPLH+A ++ + LLE GA V+A+ + G+ PL++A +L +V+ LL+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 465 FKA 467
A
Sbjct: 123 AGA 125
Score = 113 bits (285), Expect = 5e-30
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 46/162 (28%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADI 164
G TPLH+AAR G+ ++V++L++ GA K+ G LH+A V +LL GAD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 165 NVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNA 224
N ++ G+T +A RNGH
Sbjct: 62 NAKDKNGRTPLHLA--------------------------------------ARNGHLEV 83
Query: 225 VKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
VKL+LE GA+V+AKD+ +T L +A +GHL++V+ LL+ GA
Sbjct: 84 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 106 bits (268), Expect = 1e-27
Identities = 48/124 (38%), Positives = 82/124 (66%), Gaps = 1/124 (0%)
Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
G+ PLH+A +NG++ + L+ GA+VNA++K +TPLH+A ++ + LLE GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLL 496
+A+ + G+ PL++A +L +V+ LL+ A+VN+ D+ GRT LHLA + ++ +++ LL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 497 VNKA 500
A
Sbjct: 122 EAGA 125
Score = 104 bits (263), Expect = 6e-27
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 40/161 (24%)
Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNI 301
+T L +A +GHL++V+ LL+ GA V++ + +PLHLA H+ +V+LLL
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE------ 56
Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
GA+VN KD +TPLH+A + + V
Sbjct: 57 --------------------------------AGADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 362 SLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGA 401
LL++ GADVN D G+ PLH+A +NG++ + L+ GA
Sbjct: 85 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 101 bits (254), Expect = 1e-25
Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 11/127 (8%)
Query: 45 DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
+G++ LH+AA + +V+LLLE DVNA D G T LH +A+ V++L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH-LAARNGHLEV-VKLLLEAG 58
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VG 155
A+VN K+K G TPLH+AAR G+ ++V++L++ GA K+ G LH+A V
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 156 ILLRKGA 162
+LL GA
Sbjct: 119 LLLEAGA 125
Score = 97.8 bits (245), Expect = 2e-24
Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 8/115 (6%)
Query: 27 IAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLH 83
+ KLL E GA++N D +G++ LH+AA + +V+LLLE DVNA D G T LH
Sbjct: 17 VVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 73
Query: 84 TVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138
+A+ V++L A+VN K+K G TPLH+AAR G+ ++V++L++ GA+
Sbjct: 74 -LAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126
Score = 97.0 bits (243), Expect = 3e-24
Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 40/158 (25%)
Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
LHL RNGH VKL+LE GA+V+AKD+ +T L +A +GHL++V+ LL+ GA V++
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
+ +PLHLA H+ +V+LLL
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLE------------------------------------ 89
Query: 332 LYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGA 369
GA+VN KD +TPLH+A + + V LL++ GA
Sbjct: 90 --AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 97.0 bits (243), Expect = 3e-24
Identities = 48/125 (38%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
+TPLH+A ++ + LLE GA V+A+ + G+ PL++A +L +V+ LL+ A+VN
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVIN 530
+ D+ GRT LHLA + ++ +++ LL AD+NAK G TPLHLA + + V+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHLAARNGHLEVVK 118
Query: 531 KLLDY 535
LL+
Sbjct: 119 LLLEA 123
Score = 92.0 bits (230), Expect = 1e-22
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
G T LH +A+ V++L A+VN K+K G TPLH+AAR G+ ++V++L++ GA
Sbjct: 2 GRTPLH-LAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 138 HTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMAYEMKNFPAIEL 189
K+ G LH+A V +LL GAD+N ++ G+T +A + ++L
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 190 FLKYG 194
L+ G
Sbjct: 120 LLEAG 124
Score = 89.7 bits (224), Expect = 1e-21
Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 4/109 (3%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
G+ PL++A +L +V+ LL+ A+VN+ D+ GRT LHLA + ++ +++ LL AD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
NAK + G TPLHLA + + V+ LL+ D++ KDKNG T LH
Sbjct: 62 NAKDKN----GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 121 bits (304), Expect = 3e-31
Identities = 50/278 (17%), Positives = 93/278 (33%), Gaps = 59/278 (21%)
Query: 310 NKAPLHLVVQRKSWN--TTMFKTLLYHGANVNVKDDEN----KTPLHIAIESQCW---DA 360
N+ L +V R S + + LL H + ++ KT L A+ + D
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 361 VSLLVKHGAD-----------VNVIDNQGQMPLHIAVQNGYVAI-PNLIRHGANVNARNK 408
+ +L+ + +GQ LHIA++ L+ GA+V+A+ +
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Query: 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK---F 465
G+ PL +A + IV L +
Sbjct: 125 GRFFQPK-------------------DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165
Query: 466 KANVNSSDQFGRTVLHLAVKIQN---------VAILECLLVNKADINAKIISGIWK---G 513
+A++ D G TVLH V I + + + LL+ A + G
Sbjct: 166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225
Query: 514 YTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+PL +A ++ + ++ ++ D + H
Sbjct: 226 LSPLMMAAKTGKIGIFQHII----RREIADAAAHHHHH 259
Score = 114 bits (287), Expect = 6e-29
Identities = 41/270 (15%), Positives = 84/270 (31%), Gaps = 67/270 (24%)
Query: 212 LLLHLVRNGHQNA----VKLILEKGANVHAKD----QLCKTALDIAV---EHGHLKIVEF 260
+L +V G + + +L + ++ KT L A+ G +
Sbjct: 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67
Query: 261 LLDHGACVDSLQFI------------HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGP 308
LLD +++ + LH+AIE++ V+LL+ +++ +
Sbjct: 68 LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV---EKGADVHAQA- 123
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
+ + + + PL +A + V L ++G
Sbjct: 124 --------------------RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163
Query: 369 ---ADVNVIDNQGQMPLHIAVQNGYVAIPN----------LIRHGANVNA-------RNK 408
AD+ D++G LH V N L+ A + N
Sbjct: 164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN 223
Query: 409 YAKTPLHIAVEQKNMSALNYLLEHGAQVDA 438
+PL +A + + +++ A
Sbjct: 224 DGLSPLMMAAKTGKIGIFQHIIRREIADAA 253
Score = 100 bits (250), Expect = 6e-24
Identities = 43/282 (15%), Positives = 71/282 (25%), Gaps = 92/282 (32%)
Query: 27 IAKLLAERGANINDP---FPDDGKSCLHIAATKNIR----LVRLLLEYNVDVNAVDNLGN 79
+ L + D P GK+CL A + +LL+ + N
Sbjct: 24 LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83
Query: 80 TVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA-- 137
+ G T LHIA V +L++ GA
Sbjct: 84 ------------------------SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119
Query: 138 ------------HTECKNHQGYNALHVA--------VGILLRKG---ADINVENNFGKTA 174
+ G L +A V L G AD+ +++ G T
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTV 179
Query: 175 FQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGAN 234
+ + EN K L+L K A
Sbjct: 180 LHALVAIAD-----------------NTRENTK------------FVTKMYDLLLIKCAK 210
Query: 235 VHAKDQLC-------KTALDIAVEHGHLKIVEFLLDHGACVD 269
+ L + L +A + G + I + ++
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 97.2 bits (242), Expect = 8e-23
Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 46/230 (20%)
Query: 187 IELFLKYGVNVEQCVCHENVKHGGQLLLHL----VRNGHQNAVKLILEKG---------- 232
+ L + + E G+ L + G + + ++L+
Sbjct: 25 LSFLLTHKKRLTDEEFREPST--GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI 82
Query: 233 -ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDS---------------LQFIHS 276
+ +TAL IA+E VE L++ GA V + F
Sbjct: 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142
Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQR-------KSWNTTMFK 329
PL LA IV L + ++ + LH +V + T M+
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202
Query: 330 TLLYHGANVN-------VKDDENKTPLHIAIESQCWDAVSLLVKHGADVN 372
LL A + + +++ +PL +A ++ +++
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 89.8 bits (223), Expect = 2e-20
Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 32/178 (17%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN-------------DPFPDDGKS 48
++ G T AI +LL E+GA+++ + G+
Sbjct: 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142
Query: 49 CLHIAATKN-IRLVRLLLE---YNVDVNAVDNLGNTVLHTVASI-------KTRDPTAVE 97
L +AA N +V L E D+ D+ GNTVLH + +I +
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202
Query: 98 ILKTNRANVN-------IKNKEGDTPLHIAARTGNYKMVRVLIDHGAH-TECKNHQGY 147
+L A + + N +G +PL +AA+TG + + +I +H +
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHHH 260
Score = 61.3 bits (149), Expect = 1e-10
Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 443 GKDPLYIAVEMHN----LSIVEQLLKFKANVNSSD----QFGRTVLHLAVKIQN------ 488
+ L+ V + ++ LL K + + G+T L A+ +
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 489 ----VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDK 544
+ I E + IN+ ++G T LH+A+E + + L++ D+ + +
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124
Query: 545 NGNTALHPS 553
Sbjct: 125 GRFFQPKDE 133
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 119 bits (300), Expect = 1e-30
Identities = 53/285 (18%), Positives = 96/285 (33%), Gaps = 67/285 (23%)
Query: 213 LLHLVRNGHQNAVKLILEK--------GANVHAKDQLCKTALDIAV---EHGHLKIVEFL 261
L +V G + +LE + + + KT L AV + G + L
Sbjct: 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65
Query: 262 LDHGACVDSLQFI------------HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPT 309
L + + + HS LH+AIEK+ + V+LL+ N +++ +
Sbjct: 66 LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE---NGADVHLRACG 122
Query: 310 NKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG- 368
H T Y G + PL +A ++ WD V+ L+++
Sbjct: 123 RFFQKHQ------------GTCFYFG----------ELPLSLAACTKQWDVVTYLLENPH 160
Query: 369 --ADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
A + D+ G LH V + A N + L I + +
Sbjct: 161 QPASLEATDSLGNTVLHALV----------------MIADNSPENSALVIHMYDGLLQMG 204
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNS 471
L + G PL +A + + I +L+ + + +
Sbjct: 205 ARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249
Score = 118 bits (298), Expect = 2e-30
Identities = 41/274 (14%), Positives = 83/274 (30%), Gaps = 51/274 (18%)
Query: 170 FGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHG--GQLLLHL----VRNGHQN 223
F + + L+Y + + G G+ L +++G
Sbjct: 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60
Query: 224 AVKLILEKG-----------ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVD--- 269
+ +L+ A + +AL IA+E L+ V+ L+++GA V
Sbjct: 61 CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120
Query: 270 -----------SLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVV 318
F PL LA + +V LL + ++ LH
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHA-- 178
Query: 319 QRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQG 378
+ + + L I + + L + ++QG
Sbjct: 179 -----------------LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQG 221
Query: 379 QMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAK 411
PL +A + G + I +++ + A + +
Sbjct: 222 LTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
Score = 117 bits (295), Expect = 4e-30
Identities = 44/250 (17%), Positives = 81/250 (32%), Gaps = 59/250 (23%)
Query: 333 YHGANVNVKDDENKTPLHIAIESQ---CWDAVSLLVKHG-----------ADVNVIDNQG 378
Y + + KT L A+ + + L++ A QG
Sbjct: 31 YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQG 90
Query: 379 QMPLHIAVQNGYVAIPN-LIRHGANVNARN-------------KYAKTPLHIAVEQKNMS 424
LHIA++ + L+ +GA+V+ R + + PL +A K
Sbjct: 91 HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150
Query: 425 ALNYLLEHG---AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLH 481
+ YLLE+ A ++A LG L+ V + + + + L
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALV-----------------MIADNSPENSALV 193
Query: 482 LAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDV 541
+ + + + L +G TPL LA + + +L
Sbjct: 194 IHMYDGLLQMGARLCPTVQLEEISNH----QGLTPLKLAAKEGKIEIFRHILQ------- 242
Query: 542 KDKNGNTALH 551
++ +G A H
Sbjct: 243 REFSGAAAHH 252
Score = 116 bits (291), Expect = 1e-29
Identities = 53/267 (19%), Positives = 83/267 (31%), Gaps = 51/267 (19%)
Query: 273 FIHSPLHLAIEKQHIAIVQLLL-----RRNNNNININTKGPTNKAPLHLVVQRKSWNTT- 326
F L + + + LL + T+G T K L V
Sbjct: 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60
Query: 327 MFKTLLYHG-----------ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVID 375
LL A + + + LHIAIE + V LLV++GADV++
Sbjct: 61 CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120
Query: 376 N-------------QGQMPLHIAVQNGYVAIPN-LIRHG---ANVNARNKYAKTPLHIAV 418
G++PL +A + L+ + A++ A + T LH V
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180
Query: 419 EQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRT 478
+ A L I + L + +L S+ G T
Sbjct: 181 -----------------MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223
Query: 479 VLHLAVKIQNVAILECLLVNKADINAK 505
L LA K + I +L + A
Sbjct: 224 PLKLAAKEGKIEIFRHILQREFSGAAA 250
Score = 109 bits (274), Expect = 4e-27
Identities = 40/271 (14%), Positives = 75/271 (27%), Gaps = 69/271 (25%)
Query: 46 GKSCLHIAATK-NIRLVRLLLEY--------NVDVNAVDNLGNTVLHTVASIKTRD--PT 94
+ L ++ + LLEY + G T L A + +D
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNA 60
Query: 95 AVEIL-----------KTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA------ 137
+ L A + +G + LHIA + + V++L+++GA
Sbjct: 61 CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120
Query: 138 -------HTECKNHQGYNALHVA--------VGILLRKG---ADINVENNFGKTAFQMAY 179
H + G L +A V LL A + ++ G T
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHAL- 179
Query: 180 EMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKD 239
V + L+ + +G + +
Sbjct: 180 ---------------------VMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN 218
Query: 240 QLCKTALDIAVEHGHLKIVEFLLDHGACVDS 270
T L +A + G ++I +L +
Sbjct: 219 HQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249
Score = 98.3 bits (245), Expect = 3e-23
Identities = 41/175 (23%), Positives = 64/175 (36%), Gaps = 30/175 (17%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN------------DPFPDDGKSC 49
+A +G + AI KLL E GA+++ G+
Sbjct: 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139
Query: 50 LHIAATKN-IRLVRLLLE---YNVDVNAVDNLGNTVLHTVASI--KTRDPTA-------- 95
L +AA +V LLE + A D+LGNTVLH + I + + +A
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199
Query: 96 ----VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQG 146
L I N +G TPL +AA+ G ++ R ++ +H
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254
Score = 86.8 bits (215), Expect = 2e-19
Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 34/177 (19%)
Query: 409 YAKTPLHIAVEQKNMSALNYLLEH--------GAQVDARTQLGKDPLYIAVEMHN---LS 457
+ + L V + L LLE+ GK L AV +
Sbjct: 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60
Query: 458 IVEQLLKF-----------KANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
+ LL+ A G + LH+A++ +++ ++ L+ N AD++ +
Sbjct: 61 CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120
Query: 507 ISGIWK---------GYTPLHLAVESNNEAVINKLLDYNP---DLDVKDKNGNTALH 551
++ G PL LA + V+ LL+ L+ D GNT LH
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 177
Score = 57.1 bits (138), Expect = 3e-09
Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 18/128 (14%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKF--------KANVNSSDQFGRTVLHLAVKIQN---VAI 491
+D L+ V + LL++ + + G+T L AV A
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 492 LECLLVNKAD-------INAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDK 544
+ LL D +NA+ ++G++ LH+A+E + + L++ D+ ++
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 545 NGNTALHP 552
H
Sbjct: 122 GRFFQKHQ 129
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 109 bits (274), Expect = 1e-28
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 347 TPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNA 405
A+++ D V V G DVN G+ PLH A G + I L+ GA++NA
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 406 RNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVE 460
+K+ TPL AV + ++S + LL GA + G ++++
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 102 bits (257), Expect = 3e-26
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 329 KTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQN 388
K + G +VN + + PLH A + + + L+ GAD+N D PL AV
Sbjct: 24 KDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83
Query: 389 GYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQ 420
G+V+ L+ GA+ + T Q
Sbjct: 84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116
Score = 101 bits (255), Expect = 6e-26
Identities = 32/159 (20%), Positives = 45/159 (28%), Gaps = 46/159 (28%)
Query: 109 KNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRK 160
D A + G+ V+ + G G LH A + LL K
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 161 GADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNG 220
GADIN + T A V G
Sbjct: 63 GADINAPDKHHITPLLSA--------------------------------------VYEG 84
Query: 221 HQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVE 259
H + VKL+L KGA+ K TA + +++
Sbjct: 85 HVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 97.5 bits (244), Expect = 2e-24
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Query: 374 IDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEH 432
+ + A++NG + + G +VN + + PLH A + + L +LL
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 433 GAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAIL 492
GA ++A + PL AV ++S V+ LL A+ G T A+L
Sbjct: 63 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALL 122
Query: 493 E 493
+
Sbjct: 123 Q 123
Score = 95.9 bits (240), Expect = 7e-24
Identities = 32/153 (20%), Positives = 49/153 (32%), Gaps = 39/153 (25%)
Query: 242 CKTALDIAVEHGHLKIVEFLLDHGACVDS-LQFIHSPLHLAIEKQHIAIVQLLLRRNNNN 300
C A+++G L V+ + G V+ L+ PLH A + + I++ LL
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL----- 61
Query: 301 ININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDA 360
GA++N D + TPL A+
Sbjct: 62 ---------------------------------KGADINAPDKHHITPLLSAVYEGHVSC 88
Query: 361 VSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI 393
V LL+ GAD V G A+
Sbjct: 89 VKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 93.6 bits (234), Expect = 4e-23
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 3/110 (2%)
Query: 45 DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
A + V+ + DVN G LH A+ + +E L
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLH-YAADCGQLEI-LEFLLLKG 63
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA 153
A++N +K TPL A G+ V++L+ GA K G A
Sbjct: 64 ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113
Score = 92.8 bits (232), Expect = 8e-23
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLK 464
A++ ++ + + G V+ + G+ PL+ A + L I+E LL
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN 524
A++N+ D+ T L AV +V+ ++ LL AD K G T
Sbjct: 62 KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP----DGLTAFEATDNQA 117
Query: 525 NEAVI 529
+A++
Sbjct: 118 IKALL 122
Score = 92.5 bits (231), Expect = 9e-23
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 10/114 (8%)
Query: 73 AVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
+ ++ + A V+ +VN + G PLH AA G +++ L
Sbjct: 2 PLGSMCDKEFM-WALKNGDLDE-VKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59
Query: 133 IDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFGKTAFQMA 178
+ GA + L A V +LL KGAD V+ G TAF+
Sbjct: 60 LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113
Score = 89.8 bits (224), Expect = 1e-21
Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 40/141 (28%)
Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
++NG + VK + KG +V+ + + L A + G L+I+EFLL GA +++
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
+ +PL A+ + H++ V+LLL
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLS------------------------------------ 94
Query: 332 LYHGANVNVKDDENKTPLHIA 352
GA+ VK + T
Sbjct: 95 --KGADKTVKGPDGLTAFEAT 113
Score = 87.8 bits (219), Expect = 5e-21
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
A++ +L V+ + +VN + + GR LH A + ILE LL+ ADI
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
NA TPL AV + + + LL D VK +G TA
Sbjct: 67 NAPDKHH----ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
Score = 77.8 bits (193), Expect = 2e-17
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 7 ATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKN-IRLVRL 63
F A+ + K +G ++N + G+ LH AA + ++
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL---EGGRKPLHYAADCGQLEILEF 58
Query: 64 LLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAART 123
LL D+NA D T L A + V++L + A+ +K +G T
Sbjct: 59 LLLKGADINAPDKHHITPLL-SAVYEGHVSC-VKLLLSKGADKTVKGPDGLTAFEATDNQ 116
Query: 124 G 124
Sbjct: 117 A 117
Score = 43.9 bits (105), Expect = 9e-06
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLHIAATKNIRL 60
AD+NA +K IT A+ KLL +GA+ DG + + I+
Sbjct: 64 ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG---PDGLTAFEATDNQAIKA 120
Query: 61 V 61
+
Sbjct: 121 L 121
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 106 bits (267), Expect = 1e-27
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 301 ININTK-GPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWD 359
+K G T PLH + K LL GA+VN + + TPLH+A ++ +
Sbjct: 2 HMWGSKDGNT---PLHNAAKNGHAEEV--KKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56
Query: 360 AVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLH 415
V LL+ GADVN G P H+A +NG+ I L GA+VNAR+ + H
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 105 bits (266), Expect = 1e-27
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 368 GADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSAL 426
G G PLH A +NG+ L+ GA+VNAR+K TPLH+A + + +
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 427 NYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLH 481
LL GA V+AR++ G P ++A + + IV+ L A+VN+ H
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 99.8 bits (250), Expect = 2e-25
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 35 GANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDP 93
G DG + LH AA V+ LL DVNA GNT LH +A+
Sbjct: 1 GHMWGS---KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLH-LAAKNGHAE 56
Query: 94 TAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
V++L A+VN ++K+G+TP H+A + G++++V++L GA ++ + H
Sbjct: 57 I-VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 95.1 bits (238), Expect = 1e-23
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 41/153 (26%)
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIV 290
G +KD T L A ++GH + V+ LL GA V++ + ++PLHLA + H IV
Sbjct: 1 GHMWGSKDG--NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 291 QLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLH 350
+LLL GA+VN + + TP H
Sbjct: 59 KLLLA--------------------------------------KGADVNARSKDGNTPEH 80
Query: 351 IAIESQCWDAVSLLVKHGADVNVIDNQGQMPLH 383
+A ++ + V LL GADVN H
Sbjct: 81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 92.4 bits (231), Expect = 9e-23
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 400 GANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIV 459
G +K TPLH A + + + LL GA V+AR++ G PL++A + + IV
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 460 EQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLH 518
+ LL A+VN+ + G T HLA K + I++ L AD+NA+ W H
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR----SWGSSHHHH 113
Score = 90.9 bits (227), Expect = 3e-22
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
G PL+ A + + V++LL A+VN+ + G T LHLA K + I++ LL AD+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
NA+ G TP HLA ++ + ++ L D++ + + H
Sbjct: 69 NARSK----DGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 90.5 bits (226), Expect = 4e-22
Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 48/149 (32%)
Query: 107 NIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILL 158
+K+G+TPLH AA+ G+ + V+ L+ GA ++ G LH+A V +LL
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 159 RKGADINVENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-V 217
KGAD+N + G T HL
Sbjct: 63 AKGADVNARSKDGNTP---------------------------------------EHLAK 83
Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTAL 246
+NGH VKL+ KGA+V+A+
Sbjct: 84 KNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 80.9 bits (201), Expect = 1e-18
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 40/139 (28%)
Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
LH +NGH VK +L KGA+V+A+ + T L +A ++GH +IV+ LL GA V++
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 272 QFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTL 331
+ ++P HLA + H IV+LL
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDA------------------------------------ 96
Query: 332 LYHGANVNVKDDENKTPLH 350
GA+VN + + H
Sbjct: 97 --KGADVNARSWGSSHHHH 113
Score = 34.7 bits (81), Expect = 0.017
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANIN--DPFPDDGKSCLH 51
ADVNA +K+G T A + I KLL +GA++N H
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS---WGSSHHHH 113
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 94.3 bits (236), Expect = 9e-24
Identities = 38/90 (42%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 346 KTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
+TPLH+A + + V LL++ GADVN D G+ PLH+A +NG++ + L+ GA+VN
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGA 434
A++K +TPLH+A ++ + LLE GA
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 85.5 bits (213), Expect = 1e-20
Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
Query: 45 DGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNR 103
+G++ LH+AA + +V+LLLE DVNA D G T LH +A+ V++L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH-LAARNGHLEV-VKLLLEAG 58
Query: 104 ANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAH 138
A+VN K+K G TPLH+AAR G+ ++V++L++ GA+
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 82.0 bits (204), Expect = 2e-19
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 65/155 (41%)
Query: 113 GDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVENNFGK 172
G TPLH+AAR G+ ++V++L++ GA D+N ++ G+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA-------------------------DVNAKDKNGR 36
Query: 173 TAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEK 231
T LHL RNGH VKL+LE
Sbjct: 37 TP---------------------------------------LHLAARNGHLEVVKLLLEA 57
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA 266
GA+V+AKD+ +T L +A +GHL++V+ LL+ GA
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 81.2 bits (202), Expect = 5e-19
Identities = 35/91 (38%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Query: 378 GQMPLHIAVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQV 436
G+ PLH+A +NG++ + L+ GA+VNA++K +TPLH+A ++ + LLE GA V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 437 DARTQLGKDPLYIAVEMHNLSIVEQLLKFKA 467
+A+ + G+ PL++A +L +V+ LL+ A
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 75.1 bits (186), Expect = 6e-17
Identities = 40/83 (48%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 214 LHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL- 271
LHL RNGH VKL+LE GA+V+AKD+ +T L +A +GHL++V+ LL+ GA V++
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 272 QFIHSPLHLAIEKQHIAIVQLLL 294
+ +PLHLA H+ +V+LLL
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLL 88
Score = 72.4 bits (179), Expect = 5e-16
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGA 137
G T LH +A+ V++L A+VN K+K G TPLH+AAR G+ ++V++L++ GA
Sbjct: 2 GRTPLH-LAARNGHLEV-VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 138 HTECKNHQGYNALHVA--------VGILLRKGA 162
K+ G LH+A V +LL GA
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 72.0 bits (178), Expect = 8e-16
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 39/128 (30%)
Query: 243 KTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLLLRRNNNNI 301
+T L +A +GHL++V+ LL+ GA V++ + +PLHLA H+ +V+LLL
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE------ 56
Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
GA+VN KD +TPLH+A + + V
Sbjct: 57 --------------------------------AGADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 362 SLLVKHGA 369
LL++ GA
Sbjct: 85 KLLLEAGA 92
Score = 70.8 bits (175), Expect = 2e-15
Identities = 34/90 (37%), Positives = 58/90 (64%)
Query: 411 KTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVN 470
+TPLH+A ++ + LLE GA V+A+ + G+ PL++A +L +V+ LL+ A+VN
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 471 SSDQFGRTVLHLAVKIQNVAILECLLVNKA 500
+ D+ GRT LHLA + ++ +++ LL A
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 68.5 bits (169), Expect = 1e-14
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 4/93 (4%)
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
G+ PL++A +L +V+ LL+ A+VN+ D+ GRT LHLA + ++ +++ LL AD+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 503 NAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
NAK G TPLHLA + + V+ LL+
Sbjct: 62 NAKDK----NGRTPLHLAARNGHLEVVKLLLEA 90
Score = 64.3 bits (158), Expect = 4e-13
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 476 GRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDY 535
GRT LHLA + ++ +++ LL AD+NAK G TPLHLA + + V+ LL+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD----KNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 536 NPDLDVKDKNGNTALH 551
D++ KDKNG T LH
Sbjct: 58 GADVNAKDKNGRTPLH 73
Score = 26.9 bits (61), Expect = 5.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGA 36
ADVNA +K G T A + + KLL E GA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 101 bits (253), Expect = 2e-23
Identities = 45/397 (11%), Positives = 101/397 (25%), Gaps = 92/397 (23%)
Query: 29 KLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNLGNTVLHTVASI 88
+ N+ + + L + R + L + V
Sbjct: 51 HIFLPGTKNM-----EQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCS 105
Query: 89 KTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQ--G 146
D + +L T+ V + E +AA G+ ++ L + Q
Sbjct: 106 SALD--TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN 163
Query: 147 YNALHVA--------VGILLRKGADINVEN--NFGKTAFQMAYEMKNFPAIELFLKYGVN 196
Y+A +A + L AF+ A A+
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA-------AVG-------- 208
Query: 197 VEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLK 256
GH N + +L+ + + E+G
Sbjct: 209 ----------------------RGHHNVINFLLDCPVMLAYAE-------IHEFEYGEKY 239
Query: 257 IVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHL 316
+ F+ H + + H L+ +V ++ L
Sbjct: 240 VNPFIARHVNRLKEM---HDAFKLSNPDGVFDLVT------------KSECLQGFYMLRN 284
Query: 317 VVQRKSWNTTMFKTLLY--------HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
+++R + + + + A + L +A+ A +LL+
Sbjct: 285 LIRRN--DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 342
Query: 369 ADVNVIDNQGQMPLHIAVQNGYVAIPN-LIRHGANVN 404
+ + + +I G + + + H + +
Sbjct: 343 SVLALTKANN---YYINETGGRLDLRAVALEHHHHHH 376
Score = 101 bits (253), Expect = 2e-23
Identities = 41/318 (12%), Positives = 82/318 (25%), Gaps = 53/318 (16%)
Query: 192 KYGVNVEQCVCHENVKH--GGQLLLHLVRNGHQNA---VKLILEKGANVHAKDQLCKTAL 246
Y N +Q + K + G +A + L+L V A
Sbjct: 73 HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAF 132
Query: 247 DIAVEHGHLKIVEFLLDHGACVDSLQFI---HSPLHLAIEKQHIAIVQLLLRR--NNNNI 301
+A E+GHL ++ L + + LA E H+ ++ L
Sbjct: 133 RLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 192
Query: 302 NINTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAV 361
I + + + + LL + + +
Sbjct: 193 MIQAENYY---AFRWAAVGRG-HHNVINFLLDCPVMLAYAEIHEFEYGEKYV-------N 241
Query: 362 SLLVKHGADVNVIDN--------------------QGQMPLHIAVQNG---------YVA 392
+ +H + + + QG L ++ ++
Sbjct: 242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL 301
Query: 393 IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
I+ A A L +A+ N A LL + + + YI
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYINET 358
Query: 453 MHNLSIVEQLLKFKANVN 470
L + L+ + +
Sbjct: 359 GGRLDLRAVALEHHHHHH 376
Score = 100 bits (251), Expect = 3e-23
Identities = 34/242 (14%), Positives = 76/242 (31%), Gaps = 26/242 (10%)
Query: 336 ANVNVKDDENKTPLHIAIESQCW---DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVA 392
++ + K +++ +A + C D + LL+ V VI + +A +NG++
Sbjct: 83 SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH 142
Query: 393 IPN-LIRHGANVNARNKYAK--TPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD---P 446
+ N L A+ +A E ++ LN L E ++
Sbjct: 143 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF 202
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKI 506
+ AV + +++ LL + ++ V + L
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 262
Query: 507 ISGI---------WKGYTPLHLAVESNNEAVINKL--------LDYNPDLDVKDKNGNTA 549
G+ +G+ L + N+E +++ + + + N
Sbjct: 263 PDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 322
Query: 550 LH 551
L
Sbjct: 323 LR 324
Score = 94.6 bits (235), Expect = 3e-21
Identities = 44/348 (12%), Positives = 96/348 (27%), Gaps = 49/348 (14%)
Query: 214 LHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQF 273
L L+ ++ A+ + L N+ QL + + + H L A ++
Sbjct: 39 LSLMTLSYKEAIHIFLPGTKNMEQVRQL------LCLYYAHYNRNAKQLWSDAHKKGIK- 91
Query: 274 IHSPLHLAIE---KQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWN--TTMF 328
+A + + LLL ++ + N L + N +
Sbjct: 92 SEVICFVAAITGCSSALDTLCLLL---TSDEIVKVIQAENYQAFRLA----AENGHLHVL 144
Query: 329 KTLLYHGANVNVKDDENK--TPLHIAIESQCWDAVSLLVKHGADVNV--IDNQGQMPLHI 384
L + + + +A E+ ++ L + I +
Sbjct: 145 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 204
Query: 385 -AVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQL 442
AV G+ + N L+ + + V ++ H ++
Sbjct: 205 AAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP-------FIARHVNRLKE---- 253
Query: 443 GKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADI 502
D ++ +V S G +L ++ + +L+ + +
Sbjct: 254 MHDAFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304
Query: 503 N----AKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNG 546
A + L LA+ N+ LL L + N
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN 352
Score = 67.3 bits (164), Expect = 3e-12
Identities = 27/195 (13%), Positives = 55/195 (28%), Gaps = 7/195 (3%)
Query: 359 DAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAV 418
+A+ + + ++ + L + + L +++ I
Sbjct: 48 EAIHIFLPGTKNMEQVRQ----LLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITG 103
Query: 419 EQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQF--G 476
+ L LL V +A E +L ++ +L + +
Sbjct: 104 CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN 163
Query: 477 RTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYN 536
LA + ++ +L L +I Y AV + VIN LLD
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGRGHHNVINFLLDCP 222
Query: 537 PDLDVKDKNGNTALH 551
L + +
Sbjct: 223 VMLAYAEIHEFEYGE 237
Score = 52.3 bits (125), Expect = 2e-07
Identities = 20/202 (9%), Positives = 41/202 (20%), Gaps = 57/202 (28%)
Query: 3 ADVNATNK--EGITLFQQAIVSSQTPIAKLLAERGANINDP-FPDDGKSCLHIAATKN-- 57
E F+ A + + L E + AA
Sbjct: 152 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 211
Query: 58 IRLVRLLLEYNVDVNAVDNLGNTVLHTVAS------------------------------ 87
++ LL+ V + + +
Sbjct: 212 HNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT 271
Query: 88 --------------IKTRDPTAVEILKTNR--------ANVNIKNKEGDTPLHIAARTGN 125
I+ D ++ ++ A + + L +A R GN
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 331
Query: 126 YKMVRVLIDHGAHTECKNHQGY 147
+L+ + Y
Sbjct: 332 QGACALLLSIPSVLALTKANNY 353
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 89.2 bits (222), Expect = 1e-21
Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 40/150 (26%)
Query: 249 AVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNININTKGP 308
H H L+ G+ + S + L A V++L+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS--DLGKKLLEAARAGQDDEVRILMA------------- 45
Query: 309 TNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHG 368
+GA+V KD TPLH+A + + V LL++ G
Sbjct: 46 -------------------------NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 369 ADVNVIDNQGQMPLHIAVQNGYVAIPNLIR 398
ADV D G+ I++ NG + +++
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 79.9 bits (198), Expect = 2e-18
Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 42/148 (28%)
Query: 218 RNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSL-QFIHS 276
+ H + ++ +G+++ + L A G V L+ +GA V + + +
Sbjct: 3 SHHHHHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNGST 59
Query: 277 PLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGA 336
PLHLA H+ +V+LLL GA
Sbjct: 60 PLHLAARNGHLEVVKLLLE--------------------------------------AGA 81
Query: 337 NVNVKDDENKTPLHIAIESQCWDAVSLL 364
+V +D KT I+I++ D +L
Sbjct: 82 DVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 79.5 bits (197), Expect = 3e-18
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 385 AVQNGYVAIPN-LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLG 443
+ + + L+ G+++ + L A + L+ +GA V A+ + G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 444 KDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECL 495
PL++A +L +V+ LL+ A+V + D+FG+T +++ N + E L
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 76.1 bits (188), Expect = 4e-17
Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 51/151 (33%)
Query: 120 AARTGNYKMVRVLIDHGAHTECKNHQGYNALHVA--------VGILLRKGADINVENNFG 171
+ ++ L+ G+H L A V IL+ GAD+ ++ G
Sbjct: 1 GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 172 KTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILE 230
T LHL RNGH VKL+LE
Sbjct: 58 STP---------------------------------------LHLAARNGHLEVVKLLLE 78
Query: 231 KGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
GA+V A+D+ KTA DI++++G+ + E L
Sbjct: 79 AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 73.8 bits (182), Expect = 3e-16
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 27 IAKLLAERGANINDPFPDDGKSCLHIAATKN-IRLVRLLLEYNVDVNAVDNLGNTVLHTV 85
+ L RG+++ D L AA VR+L+ DV A D G+T LH +
Sbjct: 9 HSSGLVPRGSHMGS----DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLH-L 63
Query: 86 ASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVL 132
A+ V++L A+V ++K G T I+ GN + +L
Sbjct: 64 AARNGHLEV-VKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 72.6 bits (179), Expect = 7e-16
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 187 IELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTAL 246
+ G ++ G+ LL R G + V++++ GA+V AKD+ T L
Sbjct: 10 SSGLVPRGSHMG--------SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPL 61
Query: 247 DIAVEHGHLKIVEFLLDHGACVDSL-QFIHSPLHLAIEKQHIAIVQLL 293
+A +GHL++V+ LL+ GA V + +F + ++I+ + + ++L
Sbjct: 62 HLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 71.5 bits (176), Expect = 2e-15
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 428 YLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ 487
L+ G+ + + L A V L+ A+V + D+ G T LHLA +
Sbjct: 12 GLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68
Query: 488 NVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKL 532
++ +++ LL AD+ A+ G T +++++ NE + L
Sbjct: 69 HLEVVKLLLEAGADVXAQ----DKFGKTAFDISIDNGNEDLAEIL 109
Score = 67.2 bits (165), Expect = 6e-14
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 450 AVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISG 509
H+ L+ +++ S L A + + L+ N AD+ AK
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKD--- 54
Query: 510 IWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
G TPLHLA + + V+ LL+ D+ +DK G TA
Sbjct: 55 -KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95
Score = 34.9 bits (81), Expect = 0.011
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVR 62
ADV A +K G T A + + KLL E GA++ GK+ I+ +
Sbjct: 48 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLA 106
Query: 63 LLLE 66
+L+
Sbjct: 107 EILQ 110
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 79.3 bits (195), Expect = 1e-16
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 11/127 (8%)
Query: 294 LRRNNNNININTKGPTNKAPLHLVVQR-KSWNTTMFKTLLYHGANVNVKDDENKTPLHIA 352
L N + T LHL V+ + + L+ + N++ + + T LH
Sbjct: 156 LTEKIPLANGHEPDET---ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212
Query: 353 IESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKT 412
+ + + LL++ A + + + G+ PL IA + + L+ + +
Sbjct: 213 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS-------GRF 265
Query: 413 PLHIAVE 419
H+ VE
Sbjct: 266 NSHVHVE 272
Score = 73.1 bits (179), Expect = 2e-14
Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 17/196 (8%)
Query: 289 IVQLLLRRNNNNIN------INTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKD 342
+ L N N + ++ P P ++ RK + T + Y
Sbjct: 69 ELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTA 128
Query: 343 DENKTPLHIAIESQCWDAVSLLVKHGADVNVIDN------QGQMPLHIAVQNG----YVA 392
+ + A++++ + G D+ + LH+AV++
Sbjct: 129 AKLHSLCE-AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 187
Query: 393 IPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVE 452
+ L+++ N++ + T LH N L LL A ++ + G+ PL IA
Sbjct: 188 VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247
Query: 453 MHNLSIVEQLLKFKAN 468
+ + E L + +
Sbjct: 248 LKHEHCEELLTQALSG 263
Score = 70.4 bits (172), Expect = 1e-13
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 7/123 (5%)
Query: 39 NDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNL------GNTVLH-TVASIKTR 91
+ S T++I + VD+ L T LH V S+
Sbjct: 124 HADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT 183
Query: 92 DPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALH 151
V+ L N N++ + +G T LH T N + +++L+ A E N G L
Sbjct: 184 SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243
Query: 152 VAV 154
+A
Sbjct: 244 IAK 246
Score = 70.0 bits (171), Expect = 2e-13
Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 378 GQMPLHIAVQNGYVAIPNLIRHGANVNARNKYA------KTPLHIAVE---QKNMSALNY 428
+ G ++ + A +T LH+AV + ++ +++
Sbjct: 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF 190
Query: 429 LLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQN 488
L+++ +D +T G L+ N ++ LL+ KA++ +++ G T L +A ++++
Sbjct: 191 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 250
Query: 489 VAILECLL 496
E L
Sbjct: 251 EHCEELLT 258
Score = 66.2 bits (161), Expect = 3e-12
Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 35 GANINDPFP-----DDGKSCLHIAA----TKNIRLVRLLLEYNVDVNAVDNLGNTVLHTV 85
G ++ + P + ++ LH+A ++ +V L++ + +++ G+T LH
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH-- 210
Query: 86 ASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLI 133
T + +++L +A++ I N+ G+TPL IA R + +L
Sbjct: 211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 63.1 bits (153), Expect = 4e-11
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 13/128 (10%)
Query: 417 AVEQKNMSALNYLLEHGAQVDA------RTQLGKDPLYIAVEMHN---LSIVEQLLKFKA 467
AV+ +++ L G + + + L++AV + L IV+ L++
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 468 NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA 527
N++ G T LH N L+ LL KA I G TPL +A +E
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA----NESGETPLDIAKRLKHEH 252
Query: 528 VINKLLDY 535
L
Sbjct: 253 CEELLTQA 260
Score = 61.9 bits (150), Expect = 8e-11
Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 450 AVEMHNLSIVEQLLKFKANVNS------SDQFGRTVLHLAVKIQN---VAILECLLVNKA 500
AV+ ++ + Q ++ + T LHLAV+ + + I++ L+ N
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 501 DINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
+++ + KG T LH ++N + LL +++ +++G T L
Sbjct: 197 NLDKQTG----KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243
Score = 56.9 bits (137), Expect = 4e-09
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 21/164 (12%)
Query: 126 YKMVRVLIDHGAHTECKNHQGYNALH----VAVGILLRKGADINVENNF------GKTAF 175
Y R A T K H A+ + G D+ + +TA
Sbjct: 114 YMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL 173
Query: 176 QMAYEMKN---FPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEK 231
+A + ++ ++ N+++ G LH + +KL+L
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDK------QTGKGSTALHYCCLTDNAECLKLLLRG 227
Query: 232 GANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIH 275
A++ ++ +T LDIA H E LL +H
Sbjct: 228 KASIEIANESGETPLDIAKRLKHEHCEE-LLTQALSGRFNSHVH 270
Score = 56.5 bits (136), Expect = 4e-09
Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 50/147 (34%)
Query: 244 TALDIAVEHG---HLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNN 299
TAL +AV L IV+FL+ + +D + LH + ++LLLR
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR---- 226
Query: 300 NININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWD 359
A++ + ++ +TPL IA +
Sbjct: 227 ----------------------------------GKASIEIANESGETPLDIAKRLKHEH 252
Query: 360 AVSLLVKHGADVNVIDNQGQMPLHIAV 386
LL + + G+ H+ V
Sbjct: 253 CEELLTQALS--------GRFNSHVHV 271
Score = 44.2 bits (104), Expect = 5e-05
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 2 DADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRL 60
+++ +G T ++ KLL A+I + G++ L IA K+
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA-NESGETPLDIAKRLKHEHC 253
Query: 61 VRLLLEY 67
LL +
Sbjct: 254 EELLTQA 260
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 78.1 bits (192), Expect = 4e-16
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 313 PLHLVVQRKSWNTT-MFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADV 371
LHL V+ + + + ++ +G +++ K + T LH A D + LL+K A V
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 372 NVIDNQGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVE 419
++ G+ L IA + + L+ +A PLH+
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELLEQA----QAGTFAF-PLHVDYS 295
Score = 77.0 bits (189), Expect = 1e-15
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 10/138 (7%)
Query: 341 KDDENKTPLHIAIESQCWDAVSLLVKHGADVN------VIDNQGQMPLHIAVQNGYVAIP 394
+ L AI ++ +V +G D ++ LH+AV+ A
Sbjct: 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 206
Query: 395 N----LIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIA 450
+I++G +++A+ T LH A L LL+ A V + G+ L IA
Sbjct: 207 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
Query: 451 VEMHNLSIVEQLLKFKAN 468
+ H+ E L + +A
Sbjct: 267 RKKHHKECEELLEQAQAG 284
Score = 68.5 bits (167), Expect = 7e-13
Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 377 QGQMPLHIAVQNGYVAIPNLIRHGANVNARNKYA------KTPLHIAVEQKNMSALN--- 427
+ Q +++ +G + + LH+AV+ N ++L
Sbjct: 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVD 210
Query: 428 YLLEHGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQ 487
+++++G +DA+ G L+ A + ++ LLK +A V + ++ G T L +A K
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270
Query: 488 NVAILECL 495
+ E L
Sbjct: 271 HKECEELL 278
Score = 66.6 bits (162), Expect = 3e-12
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 7/122 (5%)
Query: 40 DPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNL------GNTVLHTVASIKTRDP 93
+ + +++ V D VLH + +
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 94 TA-VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
V+ + N +++ K +G+T LH AA +++L+ A N G AL +
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Query: 153 AV 154
A
Sbjct: 266 AR 267
Score = 66.2 bits (161), Expect = 4e-12
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 27 IAKLLAERGANINDPFPD-----DGKSCLHIAA----TKNIRLVRLLLEYNVDVNAVDNL 77
+ + A G + P P + LH+A ++ LV +++ ++A
Sbjct: 167 VLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD 225
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
GNT LH + P +++L RA V N+ G+T L IA + + + +L
Sbjct: 226 GNTALH--YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 65.4 bits (159), Expect = 7e-12
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 13/123 (10%)
Query: 438 ARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQF------GRTVLHLAVKIQN--- 488
R L+ A+ +L V + + VLHLAVK+ N
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 489 VAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNT 548
+ +++ ++ N ++AK G T LH A N + LL + ++ G T
Sbjct: 206 LPLVDFIIQNGGHLDAKAA----DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 261
Query: 549 ALH 551
AL
Sbjct: 262 ALD 264
Score = 63.9 bits (155), Expect = 2e-11
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 177 MAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQN---AVKLILEKG 232
A ++ ++ G + Q + + + +L+LHL V+ +Q V I++ G
Sbjct: 157 TAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG 216
Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA---CVDSLQFIHSPLHLAIEKQHIAI 289
++ AK TAL A + ++ LL A V+ + L +A +K H
Sbjct: 217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG--ETALDIARKKHHKEC 274
Query: 290 VQLL 293
+LL
Sbjct: 275 EELL 278
Score = 63.1 bits (153), Expect = 5e-11
Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 405 ARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDA------RTQLGKDPLYIAVEMHN--- 455
R L A+ +++ ++ +G + L++AV++ N
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 456 LSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYT 515
L +V+ +++ ++++ G T LH A L+ LL +A + +G T
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE----T 261
Query: 516 PLHLAVESNN 525
L +A + ++
Sbjct: 262 ALDIARKKHH 271
Score = 58.8 bits (142), Expect = 1e-09
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 16/115 (13%)
Query: 157 LLRKGADINVENNF------GKTAFQMAYEMKN---FPAIELFLKYGVNVEQCVCHENVK 207
G D + +A ++ N P ++ ++ G +++
Sbjct: 170 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA------KA 223
Query: 208 HGGQLLLHL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
G LH + +KL+L+ A V ++ +TALDIA + H + E L
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 46.5 bits (110), Expect = 1e-05
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 22 SSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIRLVRLLLEYNVDVNAVDNLGNT 80
+ P+ + + G +++ DG + LH AA ++LLL+ V V+ G T
Sbjct: 203 QASLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET 261
Query: 81 VLHTVASIKTRDPTAVEILKTNRAN 105
L + K E+L+ +A
Sbjct: 262 ALDI--ARKKHHKECEELLEQAQAG 284
Score = 38.8 bits (90), Expect = 0.003
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATK-NIRLV 61
++A +G T A + +Q KLL + A + + G++ L IA K +
Sbjct: 217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECE 275
Query: 62 RLLLE 66
LL +
Sbjct: 276 ELLEQ 280
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 69.4 bits (169), Expect = 6e-13
Identities = 36/138 (26%), Positives = 51/138 (36%), Gaps = 2/138 (1%)
Query: 276 SPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQRKSWNTTMFKTLLYHG 335
+ L A + ++N G N PL S F LL +G
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF--LLQNG 258
Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAIPN 395
ANVN D + PLH A L +K GAD+ D++G+ PL IA++ I
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318
Query: 396 LIRHGANVNARNKYAKTP 413
L+R A +
Sbjct: 319 LLRLAKMREAEAAQGQAG 336
Score = 69.0 bits (168), Expect = 8e-13
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 377 QGQMPLHIAVQNGYV-AIPNLIRHGANVNARN--KYAKTPLHIAVEQKNMSALNYLLEHG 433
G + + + + + + HGA+VN N + TPL A ++ A +LL++G
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258
Query: 434 AQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAILE 493
A V+ G+ PL+ A + + + LK A++ + D GR L +A++ N I+
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVT 318
Query: 494 CLL 496
L
Sbjct: 319 LLR 321
Score = 68.7 bits (167), Expect = 1e-12
Identities = 33/168 (19%), Positives = 52/168 (30%), Gaps = 6/168 (3%)
Query: 386 VQNGYVAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKD 445
V+ ++ IR R + + +L E ++ G
Sbjct: 143 VEKKFLTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGAL 202
Query: 446 PLYIAVEMHNLSIVEQLLKFKANVNS--SDQFGRTVLHLAVKIQNVAILECLLVNKADIN 503
+ +L + L A+VN Q T L A ++ E LL N A++N
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262
Query: 504 AKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALH 551
G PLH A + + L DL +D G L
Sbjct: 263 QADS----AGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLT 306
Score = 66.0 bits (160), Expect = 9e-12
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 410 AKTPLHIAVEQKNMSALNYLLEHGAQVDART--QLGKDPLYIAVEMHNLSIVEQLLKFKA 467
+ ++ + L HGA V+ Q PL A ++L E LL+ A
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 468 NVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESNNEA 527
NVN +D GR LH A + + + L AD+ A+ G PL +A+E+ N
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE----GRDPLTIAMETANAD 315
Query: 528 VINKLLD 534
++ L
Sbjct: 316 IVTLLRL 322
Score = 62.9 bits (152), Expect = 7e-11
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 4/123 (3%)
Query: 12 GITLFQQAIVSSQTPIAKLLAERGANINDPFPD-DGKSCLHIAATK-NIRLVRLLLEYNV 69
G LF+ + P GA++N D + L A ++ LL+
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259
Query: 70 DVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMV 129
+VN D+ G LH + + A++ ++ EG PL IA T N +V
Sbjct: 260 NVNQADSAGRGPLH--HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
Query: 130 RVL 132
+L
Sbjct: 318 TLL 320
Score = 62.5 bits (151), Expect = 1e-10
Identities = 41/175 (23%), Positives = 55/175 (31%), Gaps = 42/175 (24%)
Query: 195 VNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLILEKGANVHAK--DQLCKTALDIAVE 251
E H G LL + L GA+V+ Q T L A
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA 244
Query: 252 HGHLKIVEFLLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTN 310
L EFLL +GA V+ PLH A H + L L+
Sbjct: 245 ANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK--------------- 289
Query: 311 KAPLHLVVQRKSWNTTMFKTLLYHGANVNVKDDENKTPLHIAIESQCWDAVSLLV 365
GA++ +D E + PL IA+E+ D V+LL
Sbjct: 290 -----------------------RGADLGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 60.6 bits (146), Expect = 4e-10
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 157 LLRKGADIN--VENNFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLL 214
L GAD+N T A + A E L+ G NV Q G+ L
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ------ADSAGRGPL 272
Query: 215 HL-VRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLD 263
H GH L L++GA++ A+D + L IA+E + IV L
Sbjct: 273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322
Score = 59.4 bits (143), Expect = 1e-09
Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 4/140 (2%)
Query: 17 QQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDN 76
+ + + + E + ++ + L + DVN V+
Sbjct: 172 PKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNG 231
Query: 77 L--GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLID 134
T L + A E L N ANVN + G PLH A G+ + + +
Sbjct: 232 GQDNATPLIQ--ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
Query: 135 HGAHTECKNHQGYNALHVAV 154
GA ++ +G + L +A+
Sbjct: 290 RGADLGARDSEGRDPLTIAM 309
Score = 53.6 bits (128), Expect = 8e-08
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 208 HGGQLLLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGAC 267
L+ A + +L+ GANV+ D + L A GH + L GA
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 268 VDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNNNIN 302
+ + PL +A+E + IV LL
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAE 329
Score = 51.3 bits (122), Expect = 4e-07
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 3 ADVNATN--KEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAA-TKNIR 59
ADVN N ++ T QA ++ + L + GAN+N G+ LH A +
Sbjct: 224 ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS-AGRGPLHHATILGHTG 282
Query: 60 LVRLLLEYNVDVNAVDNLGNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGD 114
L L L+ D+ A D+ G L D + L R + + GD
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGD 337
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.5 bits (169), Expect = 2e-12
Identities = 82/532 (15%), Positives = 154/532 (28%), Gaps = 146/532 (27%)
Query: 108 IKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGAD---- 163
+ +E D HI L + + V +LR
Sbjct: 46 LSKEEID---HIIMSKDAVSGTLRLFW------TLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 164 -INVENNFGKTAFQMAYEM---KNFPAIELFLKYGVNVEQCV-----CHENVKHGGQLLL 214
I E + Y + + ++F KY V+ Q ++ +L+
Sbjct: 97 PIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 215 HLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFI 274
G + K + A + +D + F L+ C
Sbjct: 156 D----GVLGSGKTWV---ALDVCLSYKVQCKMDFKI---------FWLNLKNC------- 192
Query: 275 HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTN-KAPLHLVVQRKS----------- 322
+SP + + ++Q LL + + N + +N K +H +
Sbjct: 193 NSPETV------LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 323 -------WNTT---MF----KTLLYHGANVNVKDD-ENKTPLHIAIESQCW-----DAVS 362
N F K LL V D T HI+++ + S
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 363 LLVKHGADVNVIDNQGQM----PLHIAVQNGYVAIPNLIRHGANVNARNKYAKTPLHIAV 418
LL+K+ D D ++ P +++ I IR G K +
Sbjct: 306 LLLKY-LDCRPQDLPREVLTTNPRRLSI------IAESIRDGLA---TWDNWKHVNCDKL 355
Query: 419 EQKNMSALNYL--------------LEHGAQVDARTQLG--------KDPLYIAVEMHNL 456
S+LN L A + L D + + ++H
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKY 414
Query: 457 SIVEQ------------LLKFKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINA 504
S+VE+ L+ K + LH ++ + + I + + D+
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLE-----NEYALHRSI-VDHYNIPKTFDSD--DLIP 466
Query: 505 KIISGIWKGYTPLHLAVESNNEAVI---NKLLDYNPDLDVKDKNGNTALHPS 553
+ + + HL + E + LD+ L+ K ++ +TA + S
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNAS 517
Score = 48.7 bits (115), Expect = 4e-06
Identities = 75/474 (15%), Positives = 156/474 (32%), Gaps = 121/474 (25%)
Query: 46 GKSCLHIAATKNIRLVRLLLEYNVD-VNAVDNLGNTVLHTVASIKTRDPTAVEILKT--N 102
GK+ + + + + V+ +++ + + NL N T +E+L+
Sbjct: 162 GKTWVALDVCLSYK-VQCKMDFKIFWL----NLKN---------CNSPETVLEMLQKLLY 207
Query: 103 RANVNIKNKEGDTPLHIAARTGNYKM-VRVLIDHGAHTEC-------KNHQGYNALHVAV 154
+ + N D +I R + + +R L+ + C +N + +NA +++
Sbjct: 208 QIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 155 GILL--RKGADINVENNFGKTAFQMAYEMKNFP---AIELFLKYGVNVE-QCVCHENVKH 208
ILL R + + T + + L LKY ++ Q + E V
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPRE-VLT 324
Query: 209 GGQLLLHLV----RNG--------HQNAVKL------------------------ILEKG 232
L ++ R+G H N KL +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 233 ANVHAKDQLCKTALDIAVEHGHLKIVEF----LLDHGACVDSLQFIHSPLHLAIEKQHIA 288
A++ L D+ + + + L++ +S I S ++L + K +
Sbjct: 385 AHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPS-IYLEL-KVKLE 440
Query: 289 IVQLLLRRNNNNININTKGPTNKAPL-------------HLVVQRKSWNTTMFKTLLYHG 335
L R ++ NI ++ HL T+F+ +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--- 497
Query: 336 ANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVN-----VIDNQGQMPLHIAVQNGY 390
++ + E K I +S W+A ++ + + DN P + + N
Sbjct: 498 --LDFRFLEQK----IRHDSTAWNASGSILNTLQQLKFYKPYICDND---PKYERLVNAI 548
Query: 391 VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGK 444
+ L + N+ +KY L IA+ ++ + E +A Q+ +
Sbjct: 549 --LDFLPKIEENL-ICSKYTDL-LRIALMAED----EAIFE-----EAHKQVQR 589
Score = 37.9 bits (87), Expect = 0.009
Identities = 43/334 (12%), Positives = 95/334 (28%), Gaps = 93/334 (27%)
Query: 8 TNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVRLLLEY 67
T E +L + + + L N P IA + L +
Sbjct: 299 TPDEVKSLLLKYLDCR----PQDLPREVLTTN-PR-----RLSIIAESIRDGLATW--DN 346
Query: 68 NVDVNAVDNLGNTVLHTVASIKTRDPT-------AVEILKTNRANVNI---------KNK 111
VN D L + +S+ +P + + + +I +
Sbjct: 347 WKHVN-CDKLTTIIE---SSLNVLEPAEYRKMFDRLSVF---PPSAHIPTILLSLIWFDV 399
Query: 112 EGDTPLHIAARTGNYKMV------RVLIDHGAHTECKNHQ-GYNALHVAVGI----LLRK 160
+ + + Y +V + + E K ALH ++ + + +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKT 458
Query: 161 --GADINVENNFGKTAFQMAYEMKN---------FPAIELFLKYGVNVEQCVCHENVKHG 209
D+ + + +KN F +FL + +EQ + H++
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR--MVFLDFRF-LEQKIRHDSTAWN 515
Query: 210 GQL-LLHLVRNGHQNAVKLILEKGANVHAKDQLCKTALDIAVEHGHLK-IVEFLLDHGAC 267
+L+ ++ L+ K +C + + I++FL
Sbjct: 516 ASGSILNTLQQ---------LKF-----YKPYICD---NDPKYERLVNAILDFLPKIEE- 557
Query: 268 VDSLQFIHSPLHLAIEKQHIAIVQLLLRRNNNNI 301
I S + ++++ L + I
Sbjct: 558 ----NLICSK--------YTDLLRIALMAEDEAI 579
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 65.3 bits (159), Expect = 2e-11
Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 9/146 (6%)
Query: 278 LHLAIEKQHI-AIVQLLLRRNNNNININTKGPTNKA--PLHLVVQRKSW-NTTMFKTLLY 333
L AI + + ++++ + + LHL V+ + + + ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 334 HGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGYVAI 393
+G +++ K + T LH A D + LL+K A V ++ G+ L IA + +
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 394 PNLIRHGANVNARNKYAKTPLHIAVE 419
L+ A+ PLH+
Sbjct: 256 EELLEQ-----AQAGTFAFPLHVDYS 276
Score = 64.5 bits (157), Expect = 4e-11
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 349 LHIAIESQCWDAVSLLVKHGADVN------VIDNQGQMPLHIAVQN---GYVAIPN-LIR 398
L AI ++ +V +G D ++ LH+AV+ + + + +I+
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 399 HGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIAVEMHNLSI 458
+G +++A+ T LH A L LL+ A V + G+ L IA + H+
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 459 VEQLLK 464
E L +
Sbjct: 256 EELLEQ 261
Score = 63.4 bits (154), Expect = 8e-11
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 7/122 (5%)
Query: 40 DPFPDDGKSCLHIAATKNIRLVRLLLEYNVDVNAVDNL------GNTVLHTVASIKTRDP 93
+ + +++ V D VLH + +
Sbjct: 127 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 186
Query: 94 TA-VEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHV 152
V+ + N +++ K +G+T LH AA +++L+ A N G AL +
Sbjct: 187 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 246
Query: 153 AV 154
A
Sbjct: 247 AR 248
Score = 61.8 bits (150), Expect = 2e-10
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 447 LYIAVEMHNLSIVEQLLKFKANVNSS------DQFGRTVLHLAVKI---QNVAILECLLV 497
L+ A+ +L V + + VLHLAVK+ ++ +++ ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 498 NKADINAKIISGIWKGYTPLHLAVESNNEAVINKLLDYNPDLDVKDKNGNTALHPS 553
N ++AK G T LH A N + LL + ++ G TAL +
Sbjct: 196 NGGHLDAKAA----DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Score = 54.1 bits (130), Expect = 7e-08
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 382 LHIAVQNGYV-AIPNLIRHGANVNA------RNKYAKTPLHIAVEQKNMSALN---YLLE 431
L A+ N + ++ +G + + LH+AV+ N ++L ++++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 432 HGAQVDARTQLGKDPLYIAVEMHNLSIVEQLLKFKANVNSSDQFGRTVLHLAVKIQNVAI 491
+G +DA+ G L+ A + ++ LLK +A V + ++ G T L +A K +
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 492 LECL 495
E L
Sbjct: 256 EELL 259
Score = 51.4 bits (123), Expect = 4e-07
Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 13/122 (10%)
Query: 414 LHIAVEQKNMSALNYLLEHGAQVDA------RTQLGKDPLYIAVEM---HNLSIVEQLLK 464
L A+ +++ ++ +G + L++AV++ +L +V+ +++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 465 FKANVNSSDQFGRTVLHLAVKIQNVAILECLLVNKADINAKIISGIWKGYTPLHLAVESN 524
++++ G T LH A L+ LL +A + + G T L +A + +
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA----GETALDIARKKH 251
Query: 525 NE 526
++
Sbjct: 252 HK 253
Score = 48.0 bits (114), Expect = 6e-06
Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 35/152 (23%)
Query: 117 LHIAARTGNYKMVRVLIDHGA------HTECKNHQGYNALHVAVGILLRKGADINVENNF 170
L A + V +G LH+AV + +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA---------- 185
Query: 171 GKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQNAVKLIL 229
+ P ++ ++ G +++ G LH + +KL+L
Sbjct: 186 ------------SLPLVDFIIQNGGHLDAKAAD------GNTALHYAALYNQPDCLKLLL 227
Query: 230 EKGANVHAKDQLCKTALDIAVEHGHLKIVEFL 261
+ A V ++ +TALDIA + H + E L
Sbjct: 228 KGRALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 47.6 bits (113), Expect = 8e-06
Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 178 AYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHL-VRNGHQN---AVKLILEKGA 233
A ++ ++ G + Q + + + +L+LHL V+ +Q V I++ G
Sbjct: 139 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 198
Query: 234 NVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGA---CVDSLQFIHSPLHLAIEKQHIAIV 290
++ AK TAL A + ++ LL A V+ + L +A +K H
Sbjct: 199 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG--ETALDIARKKHHKECE 256
Query: 291 QLLLRRNNNNIN 302
+LL +
Sbjct: 257 ELLEQAQAGTFA 268
Score = 45.3 bits (107), Expect = 4e-05
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 13/123 (10%)
Query: 210 GQLLLHLVRNGHQNAVKLILEKGANVHAK------DQLCKTALDIAVEH---GHLKIVEF 260
Q L + N +V G + + L +AV+ L +V+F
Sbjct: 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDF 192
Query: 261 LLDHGACVDSLQFI-HSPLHLAIEKQHIAIVQLLLRRNNNNININTKGPTNKAPLHLVVQ 319
++ +G +D+ ++ LH A ++LLL+ + T + L + +
Sbjct: 193 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARK 249
Query: 320 RKS 322
+
Sbjct: 250 KHH 252
Score = 29.5 bits (66), Expect = 2.9
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 3 ADVNATNKEGITLFQQAIVSSQTPIAKLLAERGANINDPFPDDGKSCLHIAATKNIRLVR 62
++A +G T A + +Q KLL + A + + G++ L IA K+ +
Sbjct: 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECE 256
Query: 63 LLLE 66
LLE
Sbjct: 257 ELLE 260
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 9e-08
Identities = 97/579 (16%), Positives = 181/579 (31%), Gaps = 209/579 (36%)
Query: 59 RLVRLLL-EYNVDVNAVDNLGNTVLHT-VASIKTRDPTAV----EILKT-NRANVNIK-- 109
+++ L L E+ L +H A + + T + E++K A + K
Sbjct: 82 QVLNLCLTEFENCY-----LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 110 -NKEGDTPLHIAARTGNYKMVRVLIDHGAHTECKNHQGYNALHVAVGILLRKGADINVEN 168
+K+ ++ L A GN ++V + G QG N ++
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIF---GG-------QG------------------NTDD 168
Query: 169 NFGKTAFQMAYEMKNFPAIELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLI 228
F E++ +L+ Y V V + K + L L+R
Sbjct: 169 YFE--------ELR-----DLYQTYHVLVGDLI-----KFSAETLSELIRT--------- 201
Query: 229 LEKGANVHAKDQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHSPLHLAIEKQHIA 288
+++ L+I +E+L + D + P+ + I
Sbjct: 202 ------TLDAEKVFTQGLNI---------LEWLENPSNTPDKDYLLSIPISCPL----IG 242
Query: 289 IVQL--------LLRRNNNNININTKGPTNKAPLHLVV-----QRKSWNT------TMFK 329
++QL LL + KG T + LV + SW +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-GLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 330 TLLYHGANV------------NVKDDENK-----TP-LHIAIESQCWDAVSLLVKHGADV 371
L + G ++D +P L I+ +Q + +
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ-----EQVQDYVNKT 356
Query: 372 NVIDNQGQMPLHIAVQNGY----VAIP--NLIRHGANVNARNKYA-------KTPLHIAV 418
N G+ + I++ NG V+ P +L +G N+ R A + P
Sbjct: 357 NSHLPAGK-QVEISLVNGAKNLVVSGPPQSL--YGLNLTLRKAKAPSGLDQSRIPFS--- 410
Query: 419 EQKNMSALNYLLEHGAQVDARTQLGKDP-----LYIAVEMHNLSIVEQLLKFKANVNSSD 473
E+K + +L V + P L A ++ I + L+K + N+ D
Sbjct: 411 ERKLKFSNRFL-----PVAS-------PFHSHLLVPASDL----INKDLVKNNVSFNAKD 454
Query: 474 QFGRTVLHLAVK-------IQNVA------ILECLLVNKAD------INA-KIIS---GI 510
+ + V ++ ++ I++C++ A I+ G
Sbjct: 455 ------IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 511 WKGYTPLHLAVESNNEA-----VINKLLDYNPDLDVKDK 544
G L N + ++ LD NPD D K
Sbjct: 509 ASGLGVL---THRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 41.2 bits (96), Expect = 0.001
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 32/116 (27%)
Query: 16 FQQAIVSSQTPIAKLLAERGANINDPFPDD--GKSCLHIAATKNIRLVRLL----LEYNV 69
+ + +++ RG + P D G+S + A R+ L+Y V
Sbjct: 1779 IESLV--------EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 70 D------------VNAVDNLGNTVLHTVASIKTRD-PTAVEILKTNRANVNIKNKE 112
+ VN N+ N VA+ R T +L + I E
Sbjct: 1831 ERVGKRTGWLVEIVN--YNVENQQ--YVAAGDLRALDTVTNVLNFIKLQ-KIDIIE 1881
Score = 37.3 bits (86), Expect = 0.017
Identities = 62/395 (15%), Positives = 110/395 (27%), Gaps = 167/395 (42%)
Query: 177 MAYEM-KNFPAI-ELFLKYGVNVEQCVCHENVKHGGQLLLHLVRNGHQNAVKLIL----E 230
M ++ K A +++ + H +G +L +V N N V L + E
Sbjct: 1631 MGMDLYKTSKAAQDVW-------NRADNHFKDTYGFSIL-DIVIN---NPVNLTIHFGGE 1679
Query: 231 KGANVHAK--DQLCKTALDIAVEHGHLKIVEFLLDHGACVDSLQFIHS-----------P 277
KG + + +T +D G LK + + S F P
Sbjct: 1680 KGKRIRENYSAMIFETIVD-----GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 278 LHLAIEKQHIAIVQLLLRRNNNNININTK--GPTNKAPLHLVVQRKSWNTTMFKTL---- 331
+E A + L ++ I + G H S L
Sbjct: 1735 ALTLME---KAAFEDL--KSKGLIPADATFAG-------H------S--------LGEYA 1768
Query: 332 -LYHGANVNVKDDENKTPLHIAIESQCWDAVSLLVKHGADVNVIDNQGQMPLHIAVQNGY 390
L A+V ++IE V ++ G + +Q
Sbjct: 1769 ALASLADV------------MSIE----SLVEVVFYRG---------------MTMQV-- 1795
Query: 391 VAIPNLIRHGANVNARNKYAKTPLHIAVEQKNMSALNYLLEHGAQVDARTQLGKDPLYIA 450
A+P + R+ Y M A+N +V A ++ A
Sbjct: 1796 -AVPR------DELGRSNYG------------MIAIN-----PGRVAAS--FSQE----A 1825
Query: 451 VEMHNLSIVEQLLKFK------ANVNSSDQFGRTVLHLAVKIQNVAI------LECLLVN 498
++ +VE++ K N N +Q Q L+ + N
Sbjct: 1826 LQ----YVVERVGKRTGWLVEIVNYNVENQ------------Q-YVAAGDLRALDT-VTN 1867
Query: 499 KADINAKIISGIWKGYTPLHLAVESNNEAVINKLL 533
+ K+ + + L + E V L
Sbjct: 1868 VLNFI-KL-----QKIDIIELQKSLSLEEVEGHLF 1896
>2r0h_A CGL3 lectin; galectin-related, sugar binding protein, chitotriose,
chitooligosaccharides; HET: CTO; 1.90A {Coprinus
cinereus} PDB: 2r0f_A*
Length = 164
Score = 30.4 bits (68), Expect = 0.87
Identities = 11/53 (20%), Positives = 18/53 (33%)
Query: 78 GNTVLHTVASIKTRDPTAVEILKTNRANVNIKNKEGDTPLHIAARTGNYKMVR 130
++ + + + NVN+ N +GD LHI R V
Sbjct: 20 NGIIVFQSDKLDLEPSPNLGPTGIDNTNVNLINAKGDVLLHIGIRRRENAFVF 72
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Bacillus cereus}
Length = 207
Score = 29.3 bits (66), Expect = 2.2
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 351 IAIESQCWDAVSLLVKHGADVNVI 374
+ + L+ GA+V +
Sbjct: 16 HCTYEEVMPHLEKLIAEGAEVRPV 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,182,715
Number of extensions: 507715
Number of successful extensions: 5584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1865
Number of HSP's successfully gapped: 554
Length of query: 553
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 455
Effective length of database: 3,965,535
Effective search space: 1804318425
Effective search space used: 1804318425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.6 bits)