BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11231
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 203 bits (516), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 97/122 (79%), Positives = 111/122 (90%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSERQAKTGA G+RLKEA+KINLSLS LGNVISALVDGK THIPYR+SKL
Sbjct: 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKL 310
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIK 120
TR+LQDSLGGN+KTVM A VGPASYN EET++TLRYA+R K I NK RVN+DPKDALL +
Sbjct: 311 TRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLRE 370
Query: 121 YQ 122
+Q
Sbjct: 371 FQ 372
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/116 (72%), Positives = 101/116 (87%), Gaps = 1/116 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSERQ+KTGA+G+ L E +KINLSLS LG VIS LV+G THIPYR+SKL
Sbjct: 234 VGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG-ATHIPYRDSKL 292
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDA 116
TR+LQDSLGGNSKT+MCA + PAS NY+ET+STLRYA R K+I NK R+N+DPKDA
Sbjct: 293 TRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 162 bits (410), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 105/145 (72%), Gaps = 24/145 (16%)
Query: 1 MGRLHLVDLAGSERQAKTG---ASG---------------------QRLKEASKINLSLS 36
+G+L+LVDLAGSERQ K G A G +R KEASKINLSLS
Sbjct: 251 VGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLS 310
Query: 37 TLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRY 96
LGNVI+AL + THIPYR+SKLTR+LQDSLGGN+KT+M AT+GPAS++Y+E++STLR+
Sbjct: 311 ALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRF 370
Query: 97 ASRVKKICNKARVNQDPKDALLIKY 121
A+R K I NK RVN+DPKD LL ++
Sbjct: 371 ANRAKNIKNKPRVNEDPKDTLLREF 395
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/117 (63%), Positives = 89/117 (76%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G+L LVDLAGSE+ KTGASGQ L+EA KIN SLS LG VI+AL DGK +H+PYR+SKLT
Sbjct: 229 GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLT 288
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALL 118
RILQ+SLGGNS+T + P+SYN ET+STLR+ R K I NKA+VN + A L
Sbjct: 289 RILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL 345
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKL
Sbjct: 258 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKL 316
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
TRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK VNQ
Sbjct: 317 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 132 bits (332), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 81/111 (72%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G+L+LVDLAGSE+ +KTGA G L EA IN SLS LGNVISAL DG THIPYR+SKLT
Sbjct: 232 GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLT 291
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQD 112
RILQ+SLGGN++T + PAS+N ET STL + R K + N VN++
Sbjct: 292 RILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEE 342
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKL
Sbjct: 258 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKL 316
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
TRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK VNQ
Sbjct: 317 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKL
Sbjct: 258 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKL 316
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
TRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK VNQ
Sbjct: 317 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKL
Sbjct: 258 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKL 316
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
TRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK VNQ
Sbjct: 317 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKL
Sbjct: 258 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKL 316
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
TRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK VNQ
Sbjct: 317 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKL
Sbjct: 249 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKL 307
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
TRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK VNQ
Sbjct: 308 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKL
Sbjct: 257 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKL 315
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
TRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK VNQ
Sbjct: 316 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKL
Sbjct: 260 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKL 318
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
TRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK VNQ
Sbjct: 319 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 80/106 (75%), Gaps = 5/106 (4%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPY 55
+G+L LVDLAGSER KTGA+G RLKE S IN SL+TLG VISAL D K +PY
Sbjct: 243 VGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPY 302
Query: 56 RNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 101
R+S LT +L+DSLGGNSKT M ATV PA+ NY+ET+STLRYA R K
Sbjct: 303 RDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 82/101 (81%), Gaps = 2/101 (1%)
Query: 3 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSKL 60
+ H VDLAGSER KTG++G+RLKE+ +IN SL LGNVISAL D + +HIPYR+SK+
Sbjct: 244 KFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKI 303
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 101
TRIL+DSLGGN+KTVM A V P+S +++ET++TL YASR +
Sbjct: 304 TRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 126 bits (316), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKL
Sbjct: 243 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKL 301
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK 106
TRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK
Sbjct: 302 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 347
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 88/140 (62%), Gaps = 5/140 (3%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G+L VDLAGSER K+G++G +LKEA IN SLS LG+VISAL G HIPYRN KLT
Sbjct: 227 GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLT 285
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDAL---- 117
++ DSLGGN+KT+M + PA N +ET ++L YASRV+ I N N K+
Sbjct: 286 MLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKK 345
Query: 118 LIKYQKEISELKKKSYNYEE 137
L+ Y KE + K EE
Sbjct: 346 LVSYWKEQAGRKGDDEELEE 365
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G+L+LVDLAGSE+ +KTGA G L EA IN SLS LGNVISAL +G T++PYR+SK+T
Sbjct: 225 GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMT 283
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 110
RILQDSLGGN +T + P+SYN ET STL + R K I N VN
Sbjct: 284 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G+L+LVDLAGSE+ +KTGA G L EA IN SLS LGNVISAL +G T++PYR+SK+T
Sbjct: 225 GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMT 283
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 110
RILQDSLGGN +T + P+SYN ET STL + R K I N VN
Sbjct: 284 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVN 332
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 80/112 (71%), Gaps = 2/112 (1%)
Query: 1 MGRLHLVDLAGSERQAKTG-ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSK 59
+G+L+LVDLAGSE +K G G R++E IN SL TLG VI+ALVD + H+PYR SK
Sbjct: 259 IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPHVPYRESK 317
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
LTR+LQ+SLGG +KT + AT+ P + EET+STL YA R K I NK VNQ
Sbjct: 318 LTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G+L+LVDLAGSE+ +KTGA G L EA IN SLS LGNVISAL +G T++PYR+SK+T
Sbjct: 225 GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMT 283
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
RILQDSLGGN +T + P+SYN ET STL + R K I
Sbjct: 284 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G+L VDLAGSER K+G++G +LKEA IN SLS LG+VI AL G HIPYRN KLT
Sbjct: 235 GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGN-QHIPYRNHKLT 293
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 105
++ DSLGGN+KT+M V PA N +ET ++L YASRV+ I N
Sbjct: 294 MLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVN 337
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 77/105 (73%), Gaps = 2/105 (1%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGK--CTHIPYRNS 58
+ ++ L+DLAGSER + +GA G R E + IN SL LGNVI+AL D K HIPYRNS
Sbjct: 251 IAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNS 310
Query: 59 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
KLTR+L+DSLGGN +T+M A V P+S Y++T +TL+YA+R K I
Sbjct: 311 KLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 80/101 (79%), Gaps = 2/101 (1%)
Query: 3 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSKL 60
+ H VDLAGSER KTG++G+ KE+ +IN SL LGNVISAL D + ++IPYR+SK+
Sbjct: 244 KFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKI 303
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 101
TRIL+DSLGGN+KTVM A V P+S +++ET++TL YASR +
Sbjct: 304 TRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 80/121 (66%), Gaps = 11/121 (9%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GK 49
+ ++ LVDLAGSER TGA G RLKE + IN SL+TLG VISAL + K
Sbjct: 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 50 CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARV 109
IPYR+S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K+I N V
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360
Query: 110 N 110
N
Sbjct: 361 N 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 80/122 (65%), Gaps = 11/122 (9%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GK 49
+ ++ LVDLAGSER TGA G RLKE + IN SL+TLG VISAL + K
Sbjct: 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 50 CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARV 109
IPYR+S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K+I N V
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360
Query: 110 NQ 111
N
Sbjct: 361 NH 362
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 80/122 (65%), Gaps = 11/122 (9%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GK 49
+ ++ LVDLAGSER TGA G RLKE + IN SL+TLG VISAL + K
Sbjct: 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 50 CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARV 109
IPYR+S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K+I N V
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360
Query: 110 NQ 111
N
Sbjct: 361 NH 362
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 80/121 (66%), Gaps = 11/121 (9%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GK 49
+ ++ LVDLAGSER TGA G RLKE + IN SL+TLG VISAL + K
Sbjct: 257 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 316
Query: 50 CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARV 109
IPYR+S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K+I N V
Sbjct: 317 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 376
Query: 110 N 110
N
Sbjct: 377 N 377
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 82/130 (63%), Gaps = 23/130 (17%)
Query: 3 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTH---------- 52
R+ LVDLAGSER T A+GQRL+E S IN SL+TLG VI+AL D K +
Sbjct: 294 RIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353
Query: 53 -----------IPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 101
+PYR+S LT +L+DSLGGNSKT M A + P +Y+ET+STLRYA + K
Sbjct: 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAK 411
Query: 102 KICNKARVNQ 111
+I +A VNQ
Sbjct: 412 RIRTRAVVNQ 421
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G+L+LVDLAGSER K+GA G RL+EA IN SLS LG+VI+AL + H+P+RNSKLT
Sbjct: 228 GKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQGHVPFRNSKLT 286
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
+LQDSL G+SKT+M V P N ET+ +L++A RV+ +
Sbjct: 287 YLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 80/118 (67%), Gaps = 3/118 (2%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC-THIPYRNSK 59
+ L+LVDLAGSER A+TGA+G RLKE IN SL LG VI L DG+ I YR+SK
Sbjct: 227 VSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSK 286
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDAL 117
LTRILQ+SLGGN+KT + T+ P S ++ET++ L++AS K + N VN+ D L
Sbjct: 287 LTRILQNSLGGNAKTRIICTITPVS--FDETLTALQFASTAKYMKNTPYVNEVSTDEL 342
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G+L+L+DLAGSE +TG G RLKE+ IN SL LG V+ AL G +PYR+SKLT
Sbjct: 247 GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQG-LPRVPYRDSKLT 305
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
R+LQDSLGG++ +++ A + P Y +T+S L +A+R K++ N+ N+
Sbjct: 306 RLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNE 355
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 106 bits (265), Expect = 6e-24, Method: Composition-based stats.
Identities = 56/110 (50%), Positives = 76/110 (69%), Gaps = 4/110 (3%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G L+L+DLAGSER + A G RLKE IN SLS LG+VI +L +H+PYRNSKLT
Sbjct: 610 GTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLT 669
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
+L+ SLGGNSKT+M + P + + ETI++LR+A++V N R+N+
Sbjct: 670 YLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKV----NNTRINK 715
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 73/101 (72%), Gaps = 2/101 (1%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSK 59
G L+LVDLAGSER + G+RL+E IN SLS LG+VI AL DG+ HIP+RNSK
Sbjct: 262 GILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSK 321
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
LT +LQ SL G+SKT+M + PA+ + ETI++LR+AS+V
Sbjct: 322 LTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKV 362
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSK 59
G L+LVDLAGSER + G RL+E IN SLS LG+VI AL D HIP+RNSK
Sbjct: 294 GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSK 353
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
LT +LQ SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 354 LTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 69/101 (68%)
Query: 3 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTR 62
+++LVDLAGSER K+G+ GQ LKEA+ IN SLS L I AL D K HIP+R KLT
Sbjct: 259 KINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTH 318
Query: 63 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
L+DSLGGN V+ + + EET+S+LR+ASR+K +
Sbjct: 319 ALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSK 59
G L+LVDLAGSER + G RL+E IN SLS LG+VI AL D HIP+RNSK
Sbjct: 249 GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSK 308
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
LT +LQ SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 309 LTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSK 59
G L+LVDLAGSER + G RL+E IN SLS LG+VI AL D HIP+RNSK
Sbjct: 237 GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSK 296
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
LT +LQ SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 297 LTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSK 59
G L+LVDLAGSER + G RL+E IN SLS LG+VI AL D HIP+RNSK
Sbjct: 238 GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSK 297
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
LT +LQ SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 298 LTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSK 59
G L+LVDLAGS R + G RL+E IN SLS LG+VI AL D HIP+RNSK
Sbjct: 238 GTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSK 297
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
LT +LQ SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 298 LTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSK 59
G L+LVDLAGSER + G RL+E I SLS LG+VI AL D HIP+RNSK
Sbjct: 238 GTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSK 297
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
LT +LQ SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 298 LTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSK 59
G+L+LVDLAGSER + +G+RL+E IN SLS LG+VI AL D +IP+RNSK
Sbjct: 241 GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSK 300
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
LT +LQ SL G+SKT+M + P + ET+++LR+AS+V
Sbjct: 301 LTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 71/103 (68%), Gaps = 5/103 (4%)
Query: 4 LHLVDLAGSERQAKTGASG----QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSK 59
L LVDLAGSER A G +RL+E IN SLSTLG VI AL + K +H+PYRNSK
Sbjct: 274 LSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSN-KESHVPYRNSK 332
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKK 102
LT +LQ+SLGG++K +M + P N E++++LR+AS+V +
Sbjct: 333 LTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQ 375
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 55/83 (66%)
Query: 28 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNY 87
A IN SLS LGNVISAL +G TH+PYR+SK+TRILQDSL GN +T + P+ +N
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 88 EETISTLRYASRVKKICNKARVN 110
ET STL + R K I N VN
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVN 83
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 54/79 (68%)
Query: 32 NLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETI 91
N SLS LGNVISAL +G TH+PYR+SK+TRILQDSLGGN +T + P+ +N ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 92 STLRYASRVKKICNKARVN 110
STL + R K I N VN
Sbjct: 61 STLMFGQRAKTIKNTVSVN 79
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 5/100 (5%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G ++LVDLAGSE + + R+ E IN SLS L NVI AL+ K HIPYRNSKL
Sbjct: 285 VGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKL 339
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
T +L SLGGNSKT+M V P ++E++ +LR+A+ V
Sbjct: 340 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 379
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 5/100 (5%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G ++LVDLAGSE + + R+ E IN SLS L NVI AL+ K HIPYRNSKL
Sbjct: 279 VGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKL 333
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
T +L SLGGNSKT+M V P ++E++ +LR+A+ V
Sbjct: 334 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 373
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 5/100 (5%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G ++LVDLAGSE + + R+ E IN SLS L NVI AL+ K HIPYRNSKL
Sbjct: 293 VGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKL 347
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
T +L SLGGNSKT+M V P ++E++ +LR+A+ V
Sbjct: 348 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 387
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 5/100 (5%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G ++LVDLAGSE + + R+ E IN SLS L NVI AL+ K HIPYRNSKL
Sbjct: 282 VGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKL 336
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
T +L SLGGNSKT+M V P ++E++ +LR+A+ V
Sbjct: 337 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 376
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 5/100 (5%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G ++LVDLAGSE + + R+ E I SLS L NVI AL+ K HIPYRNSKL
Sbjct: 282 VGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQ-KQDHIPYRNSKL 336
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRV 100
T +L SLGGNSKT+M V P ++E++ +LR+A+ V
Sbjct: 337 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 376
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
G+ LVDLAG+ER A T ++ ++ + E ++IN SL L I AL K H P+R SKL
Sbjct: 280 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKL 338
Query: 61 TRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
T++L+DS +G NS+T M AT+ P + E T++TLRYA RVK++
Sbjct: 339 TQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
G+ L+DLAG+ER A T ++ ++ + E ++IN SL L I AL K H P+R SKL
Sbjct: 318 GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKL 376
Query: 61 TRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
T++L+DS +G NS+T M AT+ P + E T++TLRYA+RVK++
Sbjct: 377 TQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 7/108 (6%)
Query: 2 GRLH----LVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYR 56
GRLH LVDLAG+ER A T ++ ++ + E ++IN SL L I AL K H P+R
Sbjct: 296 GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFR 354
Query: 57 NSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
SKLT++L+DS +G NS+T M A + P + E T++TLRYA RVK++
Sbjct: 355 ESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 7/108 (6%)
Query: 2 GRLH----LVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYR 56
GRLH LVDLAG+ER A T ++ ++ + E ++IN SL L I AL K H P+R
Sbjct: 224 GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFR 282
Query: 57 NSKLTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
SKLT++L+DS +G NS+T M A + P + E T++TLRYA RVK++
Sbjct: 283 ESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 67/102 (65%), Gaps = 2/102 (1%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSK 59
+G++ +DLAGSER A T + ++ + + + IN SL L I A+ D HIP+R+S+
Sbjct: 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM-DSDKNHIPFRDSE 287
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 101
LT++L+D G SK++M A + P E+T++TLRY+SRVK
Sbjct: 288 LTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 3 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTR 62
R+++VDLAGSE +TG G +E INL L ++ V+ ++ G T IPYR+S LT
Sbjct: 236 RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTT 294
Query: 63 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
+LQ SL S A + P + ET+STLR+ + KK+
Sbjct: 295 VLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 3 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTR 62
R+++VDLAGSE +TG G +E INL L ++ V+ ++ G T IPYR+S LT
Sbjct: 236 RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTT 294
Query: 63 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 101
+LQ SL S A + P + ET+STLR+ + K
Sbjct: 295 VLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|2QEZ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b
F2365 At 2.15 A Resolution
pdb|2QEZ|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b
F2365 At 2.15 A Resolution
pdb|2QEZ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b
F2365 At 2.15 A Resolution
pdb|2QEZ|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b
F2365 At 2.15 A Resolution
pdb|2QEZ|E Chain E, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b
F2365 At 2.15 A Resolution
pdb|2QEZ|F Chain F, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b
F2365 At 2.15 A Resolution
Length = 455
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 13 ERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSL 68
+R A A + A+K+ LS TLG++ + V +PY ++TRI+QD +
Sbjct: 32 DRLAGVAAESAEERVAAKVVLSKXTLGDLRNNPV------VPYETDEVTRIIQDQV 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,828,292
Number of Sequences: 62578
Number of extensions: 165053
Number of successful extensions: 496
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 103
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)