Query psy11231
Match_columns 172
No_of_seqs 181 out of 1460
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 21:32:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 100.0 6.5E-42 1.4E-46 306.4 10.5 137 1-137 234-370 (574)
2 KOG0245|consensus 100.0 3.2E-41 6.9E-46 311.7 10.4 134 1-134 240-379 (1221)
3 KOG0243|consensus 100.0 1.2E-38 2.7E-43 297.1 12.2 137 1-138 289-426 (1041)
4 PLN03188 kinesin-12 family pro 100.0 2.3E-36 4.9E-41 285.1 13.6 135 2-137 329-467 (1320)
5 KOG0240|consensus 100.0 1.2E-36 2.6E-41 268.8 9.0 152 2-153 230-385 (607)
6 KOG0242|consensus 100.0 9.1E-37 2E-41 280.1 7.3 136 1-136 228-365 (675)
7 KOG0241|consensus 100.0 1.3E-35 2.8E-40 272.6 12.1 134 1-134 244-382 (1714)
8 cd01364 KISc_BimC_Eg5 Kinesin 100.0 5.2E-34 1.1E-38 245.0 10.5 110 2-112 243-352 (352)
9 KOG0244|consensus 100.0 3.1E-34 6.8E-39 264.5 9.7 148 2-149 215-368 (913)
10 cd01373 KISc_KLP2_like Kinesin 100.0 5.4E-34 1.2E-38 244.0 9.5 102 2-103 233-337 (337)
11 cd01370 KISc_KIP3_like Kinesin 100.0 2.4E-33 5.1E-38 240.1 8.7 103 1-103 234-338 (338)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 4.1E-33 8.9E-38 240.0 10.0 110 1-110 240-356 (356)
13 cd01368 KISc_KIF23_like Kinesi 100.0 1.4E-32 3E-37 236.0 8.7 101 1-101 240-345 (345)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 3.9E-32 8.5E-37 232.0 10.3 103 1-103 231-333 (333)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 6.6E-32 1.4E-36 229.6 10.2 103 1-103 223-325 (325)
16 cd01376 KISc_KID_like Kinesin 100.0 7.7E-32 1.7E-36 229.0 8.9 100 1-101 220-319 (319)
17 cd01372 KISc_KIF4 Kinesin moto 100.0 1.4E-31 3.1E-36 228.8 10.2 104 1-104 236-341 (341)
18 cd01375 KISc_KIF9_like Kinesin 100.0 4.1E-31 8.9E-36 225.9 9.4 100 2-101 235-334 (334)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 3.1E-31 6.8E-36 225.3 8.5 102 1-103 219-321 (321)
20 cd01367 KISc_KIF2_like Kinesin 100.0 4.4E-31 9.5E-36 224.7 9.4 100 1-101 222-322 (322)
21 cd01366 KISc_C_terminal Kinesi 100.0 1.2E-30 2.6E-35 222.2 9.9 104 1-105 225-328 (329)
22 smart00129 KISc Kinesin motor, 100.0 2E-30 4.4E-35 220.9 9.8 110 1-110 225-335 (335)
23 PF00225 Kinesin: Kinesin moto 100.0 3.6E-30 7.8E-35 219.1 9.3 102 2-103 232-335 (335)
24 KOG0246|consensus 100.0 7E-29 1.5E-33 219.8 8.6 107 1-108 438-546 (676)
25 KOG0239|consensus 100.0 6.7E-29 1.4E-33 227.8 7.2 109 2-111 540-648 (670)
26 cd00106 KISc Kinesin motor dom 100.0 2.2E-28 4.7E-33 207.6 9.7 101 1-101 227-328 (328)
27 COG5059 KIP1 Kinesin-like prot 99.9 1.4E-27 3.1E-32 216.6 11.5 110 2-111 234-344 (568)
28 KOG0247|consensus 99.9 4.5E-28 9.8E-33 219.4 7.0 110 1-110 330-443 (809)
29 cd01363 Motor_domain Myosin an 99.9 4E-27 8.6E-32 186.1 7.8 81 1-82 106-186 (186)
30 PF04977 DivIC: Septum formati 71.6 13 0.00029 24.3 5.1 39 115-153 23-62 (80)
31 PF04102 SlyX: SlyX; InterPro 70.3 7.6 0.00017 25.7 3.6 31 115-145 24-54 (69)
32 PF03195 DUF260: Protein of un 63.0 5.5 0.00012 28.6 1.9 80 52-138 21-100 (101)
33 PF07334 IFP_35_N: Interferon- 62.0 19 0.00042 24.6 4.3 28 118-145 2-29 (76)
34 TIGR02209 ftsL_broad cell divi 60.2 30 0.00065 23.1 5.1 41 115-155 30-70 (85)
35 PRK09413 IS2 repressor TnpA; R 59.5 34 0.00074 24.8 5.6 29 118-146 73-101 (121)
36 PF06305 DUF1049: Protein of u 55.8 16 0.00035 23.4 3.0 25 119-143 44-68 (68)
37 PF15188 CCDC-167: Coiled-coil 55.5 34 0.00073 23.9 4.7 34 117-150 37-70 (85)
38 PRK00295 hypothetical protein; 54.9 33 0.00072 22.7 4.4 29 115-143 25-53 (68)
39 PRK00888 ftsB cell division pr 54.7 30 0.00065 24.8 4.6 31 115-145 33-63 (105)
40 PRK02793 phi X174 lysis protei 53.9 28 0.00061 23.3 4.0 32 115-146 28-59 (72)
41 PRK00846 hypothetical protein; 53.4 32 0.00068 23.6 4.2 29 115-143 33-61 (77)
42 PF09006 Surfac_D-trimer: Lung 52.8 53 0.0012 20.3 4.8 27 120-146 3-29 (46)
43 PF04999 FtsL: Cell division p 52.7 43 0.00093 23.1 5.0 39 117-155 43-81 (97)
44 PF00631 G-gamma: GGL domain; 51.7 18 0.00038 23.7 2.7 50 118-171 4-59 (68)
45 PRK04325 hypothetical protein; 51.6 33 0.00071 23.1 4.1 29 115-143 29-57 (74)
46 PLN03230 acetyl-coenzyme A car 51.0 45 0.00098 30.0 5.9 40 91-130 55-94 (431)
47 PRK00736 hypothetical protein; 49.6 41 0.00089 22.2 4.2 29 115-143 25-53 (68)
48 COG3879 Uncharacterized protei 47.8 68 0.0015 26.8 6.1 56 88-143 23-84 (247)
49 PRK11546 zraP zinc resistance 44.0 1E+02 0.0022 23.6 6.1 49 91-139 63-112 (143)
50 PF11598 COMP: Cartilage oligo 42.2 81 0.0017 19.3 4.9 30 116-145 8-37 (45)
51 PF08900 DUF1845: Domain of un 42.2 67 0.0014 26.0 5.3 54 91-144 37-90 (217)
52 PF04728 LPP: Lipoprotein leuc 41.2 96 0.0021 19.9 5.2 29 117-145 4-32 (56)
53 PF12325 TMF_TATA_bd: TATA ele 39.6 1E+02 0.0022 22.8 5.4 31 112-142 12-42 (120)
54 TIGR03761 ICE_PFL4669 integrat 38.9 81 0.0018 25.7 5.2 54 90-143 34-87 (216)
55 PRK10265 chaperone-modulator p 38.7 1.1E+02 0.0025 21.5 5.5 48 94-142 50-97 (101)
56 PRK02119 hypothetical protein; 38.7 69 0.0015 21.5 4.1 30 115-144 29-58 (73)
57 cd00068 GGL G protein gamma su 38.2 65 0.0014 20.4 3.7 50 120-171 3-54 (57)
58 smart00338 BRLZ basic region l 38.2 1.1E+02 0.0023 19.5 4.9 27 117-143 34-60 (65)
59 PF01166 TSC22: TSC-22/dip/bun 38.0 72 0.0016 20.7 3.8 24 124-147 15-38 (59)
60 PRK04406 hypothetical protein; 37.9 66 0.0014 21.7 3.9 29 115-143 31-59 (75)
61 PRK14127 cell division protein 37.2 77 0.0017 23.1 4.4 28 119-146 40-67 (109)
62 PF02344 Myc-LZ: Myc leucine z 37.1 82 0.0018 17.9 4.1 27 119-145 4-30 (32)
63 PF12097 DUF3573: Protein of u 36.0 62 0.0013 28.4 4.3 24 115-138 41-64 (383)
64 KOG3119|consensus 33.9 71 0.0015 26.7 4.3 33 115-147 221-253 (269)
65 KOG4603|consensus 33.8 83 0.0018 25.0 4.3 30 118-147 118-147 (201)
66 cd00584 Prefoldin_alpha Prefol 32.7 1.9E+02 0.0041 20.8 6.8 29 117-145 7-35 (129)
67 KOG1655|consensus 32.4 69 0.0015 26.0 3.8 33 119-151 29-61 (218)
68 PF04508 Pox_A_type_inc: Viral 31.0 62 0.0013 17.0 2.2 16 125-140 3-18 (23)
69 PF07106 TBPIP: Tat binding pr 30.6 1.1E+02 0.0024 23.4 4.6 29 120-148 113-141 (169)
70 PF15058 Speriolin_N: Sperioli 30.3 79 0.0017 25.5 3.8 28 114-141 10-37 (200)
71 PF11945 WASH_WAHD: WAHD domai 30.3 95 0.002 26.6 4.5 46 115-160 42-87 (297)
72 PF07544 Med9: RNA polymerase 30.1 1.3E+02 0.0027 20.5 4.4 27 118-144 54-80 (83)
73 COG4839 FtsL Protein required 29.1 1.2E+02 0.0025 22.6 4.2 41 116-156 67-107 (120)
74 PF11853 DUF3373: Protein of u 28.5 91 0.002 28.6 4.3 24 117-140 32-55 (489)
75 KOG4301|consensus 28.5 1.5E+02 0.0033 26.2 5.5 52 93-144 378-432 (434)
76 PRK05771 V-type ATP synthase s 28.2 3.2E+02 0.007 25.5 8.1 52 115-166 214-280 (646)
77 PF05377 FlaC_arch: Flagella a 28.0 1.7E+02 0.0036 18.7 4.6 26 117-142 15-40 (55)
78 KOG0463|consensus 27.7 29 0.00063 31.2 1.0 17 3-19 220-236 (641)
79 PF07716 bZIP_2: Basic region 27.7 1.5E+02 0.0033 18.2 4.7 27 117-143 26-52 (54)
80 PF05529 Bap31: B-cell recepto 27.3 1.5E+02 0.0032 23.1 4.9 29 117-145 155-183 (192)
81 PF10883 DUF2681: Protein of u 27.2 2.2E+02 0.0048 19.9 5.6 36 118-156 32-67 (87)
82 PRK15422 septal ring assembly 26.9 1.9E+02 0.0042 19.9 4.7 29 117-145 19-47 (79)
83 COG3105 Uncharacterized protei 26.6 1.9E+02 0.0041 21.9 5.0 33 119-151 37-71 (138)
84 PF00170 bZIP_1: bZIP transcri 26.3 1.8E+02 0.0038 18.4 5.3 25 119-143 36-60 (64)
85 PF12958 DUF3847: Protein of u 26.0 1.7E+02 0.0036 20.4 4.4 27 119-145 4-30 (86)
86 PF13815 Dzip-like_N: Iguana/D 26.0 1.8E+02 0.0038 21.0 4.8 30 115-144 86-115 (118)
87 COG2919 Septum formation initi 25.4 1.9E+02 0.0042 20.9 4.9 29 117-145 58-86 (117)
88 PF02609 Exonuc_VII_S: Exonucl 25.3 1.7E+02 0.0037 18.0 4.0 36 118-153 5-40 (53)
89 PF10458 Val_tRNA-synt_C: Valy 25.1 1.6E+02 0.0035 18.9 4.0 24 117-140 5-28 (66)
90 PF12808 Mto2_bdg: Micro-tubul 25.0 1.3E+02 0.0028 19.0 3.3 21 123-143 29-49 (52)
91 PF08172 CASP_C: CASP C termin 24.5 1.9E+02 0.004 24.1 5.2 30 117-146 94-123 (248)
92 PF11461 RILP: Rab interacting 24.4 2.1E+02 0.0045 18.6 4.6 29 119-147 6-34 (60)
93 KOG4797|consensus 24.3 2.9E+02 0.0063 20.3 5.8 35 116-150 60-94 (123)
94 PF03670 UPF0184: Uncharacteri 23.9 96 0.0021 21.6 2.8 27 23-49 23-49 (83)
95 PF13600 DUF4140: N-terminal d 23.7 1.8E+02 0.004 20.1 4.4 30 114-143 68-97 (104)
96 PF07106 TBPIP: Tat binding pr 23.7 1.7E+02 0.0038 22.2 4.6 25 118-142 81-105 (169)
97 PLN02678 seryl-tRNA synthetase 23.6 1.5E+02 0.0033 26.7 4.8 43 116-160 78-120 (448)
98 PRK01203 prefoldin subunit alp 23.5 2.3E+02 0.005 21.3 5.1 26 117-142 8-33 (130)
99 PF11069 DUF2870: Protein of u 23.4 2.4E+02 0.0053 20.2 4.9 23 62-84 15-37 (98)
100 PF07407 Seadorna_VP6: Seadorn 22.6 1.5E+02 0.0033 26.0 4.4 28 117-144 33-60 (420)
101 PF04880 NUDE_C: NUDE protein, 22.0 44 0.00096 26.2 1.0 21 119-139 27-47 (166)
102 PF11853 DUF3373: Protein of u 21.7 95 0.0021 28.5 3.1 25 118-143 27-51 (489)
103 PF15483 DUF4641: Domain of un 20.9 1E+02 0.0022 27.8 3.1 23 119-141 421-443 (445)
104 PF06698 DUF1192: Protein of u 20.7 2.5E+02 0.0054 18.1 4.6 25 117-141 22-46 (59)
105 PHA00728 hypothetical protein 20.6 1.4E+02 0.0031 22.3 3.3 26 116-141 5-30 (151)
106 PF08826 DMPK_coil: DMPK coile 20.4 2.6E+02 0.0056 18.2 4.9 28 116-143 32-59 (61)
107 PF04568 IATP: Mitochondrial A 20.3 2.3E+02 0.0049 20.3 4.3 21 123-143 72-96 (100)
108 PF04201 TPD52: Tumour protein 20.3 1.5E+02 0.0033 23.1 3.6 22 117-138 30-51 (162)
No 1
>KOG4280|consensus
Probab=100.00 E-value=6.5e-42 Score=306.38 Aligned_cols=137 Identities=69% Similarity=0.920 Sum_probs=132.0
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
.|||+|||||||||..+++++|++++|+.+||+||++||+||.+|.+++..||||||||||+||+|+|||||+|+||+||
T Consensus 234 ~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianv 313 (574)
T KOG4280|consen 234 SSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANV 313 (574)
T ss_pred cceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEec
Confidence 48999999999999999999999999999999999999999999999887799999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhcccccccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 81 GPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKSYNYEE 137 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~~ei~~Lk~~l~~~~~ 137 (172)
+|...+|+||++||+||+|||.|+|+|.+|.++.+..++.|+.||+.|+.++.....
T Consensus 314 sp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 314 SPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPGGS 370 (574)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccccC
Confidence 999999999999999999999999999999999999999999999999998876543
No 2
>KOG0245|consensus
Probab=100.00 E-value=3.2e-41 Score=311.66 Aligned_cols=134 Identities=54% Similarity=0.811 Sum_probs=128.7
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhc------CCCCCCCCCCchhhhccccCCCCCcee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD------GKCTHIPYRNSKLTRILQDSLGGNSKT 74 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~------~~~~~ipyRdSkLT~lL~d~LgG~~~t 74 (172)
+|||+|||||||||...+|+.|+|++||.+|||||.+||.||.||++ ++..+||||||.|||||++.||||++|
T Consensus 240 ~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKT 319 (1221)
T KOG0245|consen 240 VSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKT 319 (1221)
T ss_pred eeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchh
Confidence 68999999999999999999999999999999999999999999986 234599999999999999999999999
Q ss_pred EeEeeeCCCCCChHHHHHHHHHHHHHhcccccccccCCchHHHHHHHHHHHHHHHHHHHH
Q psy11231 75 VMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKSYN 134 (172)
Q Consensus 75 ~lI~~vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~~ei~~Lk~~l~~ 134 (172)
+||+++||.+.||+|||+|||||.|||+|+|.+++|+++...+|++|+.|+.+||+.++.
T Consensus 320 aMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~ 379 (1221)
T KOG0245|consen 320 AMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRA 379 (1221)
T ss_pred hhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999988764
No 3
>KOG0243|consensus
Probab=100.00 E-value=1.2e-38 Score=297.12 Aligned_cols=137 Identities=55% Similarity=0.754 Sum_probs=127.2
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
.|||+||||||||.+++.|+.+.|.+|++.||+||.+||+||+||.++. .|||||||||||||||+|||..+|+||+||
T Consensus 289 ~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s-~HIPYRESKLTRLLQDSLGGkTKT~iIATi 367 (1041)
T KOG0243|consen 289 IGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS-GHIPYRESKLTRLLQDSLGGKTKTCIIATI 367 (1041)
T ss_pred hcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC-CCCCchHHHHHHHHHHHhCCCceeEEEEEe
Confidence 4899999999999999999999999999999999999999999999964 899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhcccccccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 81 GPASYNYEETISTLRYASRVKKICNKARVNQDP-KDALLIKYQKEISELKKKSYNYEET 138 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~-~~~~i~~l~~ei~~Lk~~l~~~~~~ 138 (172)
||+.-+++||++||.||.|||.|+|+|.+|+.. .+.+++.|-.||.+||..+..-++.
T Consensus 368 SPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 368 SPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred CCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 999999999999999999999999999999865 4678888888888888777665544
No 4
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=285.05 Aligned_cols=135 Identities=50% Similarity=0.703 Sum_probs=118.6
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhc----CCCCCCCCCCchhhhccccCCCCCceeEeE
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD----GKCTHIPYRNSKLTRILQDSLGGNSKTVMC 77 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~----~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI 77 (172)
|+|+|||||||||...+++.|.+++|+++||+||++||+||.+|++ ++..||||||||||+||+|+|||||+|+||
T Consensus 329 SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMI 408 (1320)
T PLN03188 329 SRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMV 408 (1320)
T ss_pred EEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEE
Confidence 7899999999999999999999999999999999999999999985 345799999999999999999999999999
Q ss_pred eeeCCCCCChHHHHHHHHHHHHHhcccccccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 78 ATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKSYNYEE 137 (172)
Q Consensus 78 ~~vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~~ei~~Lk~~l~~~~~ 137 (172)
+||||...++.||++||+||+||+.|+|+|.+|...... +..|++.|.+|++|+..++.
T Consensus 409 a~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~-vn~LrelIr~Lk~EL~rLK~ 467 (1320)
T PLN03188 409 CAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDD-VNFLREVIRQLRDELQRVKA 467 (1320)
T ss_pred EecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875432 33455555555555554443
No 5
>KOG0240|consensus
Probab=100.00 E-value=1.2e-36 Score=268.84 Aligned_cols=152 Identities=49% Similarity=0.653 Sum_probs=138.1
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|||+||||||||+..++|++|.-+.|+++||+||++||+||++|++++..|||||||||||+|+|+|||||+|.+|.|++
T Consensus 230 gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~cs 309 (607)
T KOG0240|consen 230 GKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCS 309 (607)
T ss_pred ccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecC
Confidence 89999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcccccccccCCch-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHhhHhhhh
Q psy11231 82 PASYNYEETISTLRYASRVKKICNKARVNQDPK-DALLIKYQKE---ISELKKKSYNYEETISTLRYASRVKKICN 153 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~-~~~i~~l~~e---i~~Lk~~l~~~~~~i~~~r~~~~~~~~~~ 153 (172)
|+..+-.||.+||+|+.||+.|+|.+.+|.... +.+.++|+.+ +..++..+..+..++.+|++++..+..+.
T Consensus 310 Pss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~ 385 (607)
T KOG0240|consen 310 PSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDED 385 (607)
T ss_pred CccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhh
Confidence 999999999999999999999999999999765 4566666654 44466778888888899998887766553
No 6
>KOG0242|consensus
Probab=100.00 E-value=9.1e-37 Score=280.08 Aligned_cols=136 Identities=54% Similarity=0.786 Sum_probs=124.6
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcC-CCCCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG-KCTHIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~-~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
+|+|+|||||||||..+++..|.|++||++||+||++||+||++|.++ ...|||||||||||+||++|||+|+|.||||
T Consensus 228 ~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~t 307 (675)
T KOG0242|consen 228 VSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIAT 307 (675)
T ss_pred hheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEE
Confidence 478999999999999999999999999999999999999999999997 4579999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhcccccccccCCchH-HHHHHHHHHHHHHHHHHHHHH
Q psy11231 80 VGPASYNYEETISTLRYASRVKKICNKARVNQDPKD-ALLIKYQKEISELKKKSYNYE 136 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~-~~i~~l~~ei~~Lk~~l~~~~ 136 (172)
|+|...+|+||.+||+||+||+.|++++..|....+ ..+..+++++..|+.++..+.
T Consensus 308 isp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~ 365 (675)
T KOG0242|consen 308 ISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLK 365 (675)
T ss_pred eCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999987664 444555688888888887633
No 7
>KOG0241|consensus
Probab=100.00 E-value=1.3e-35 Score=272.62 Aligned_cols=134 Identities=58% Similarity=0.852 Sum_probs=127.2
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhc-----CCCCCCCCCCchhhhccccCCCCCceeE
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPYRNSKLTRILQDSLGGNSKTV 75 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~-----~~~~~ipyRdSkLT~lL~d~LgG~~~t~ 75 (172)
||||++|||||+||..++++.|.+++|+.+||+||++||.||.+|++ ++.++||||||.||+||+|.|||||+|+
T Consensus 244 vsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTv 323 (1714)
T KOG0241|consen 244 VSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTV 323 (1714)
T ss_pred eeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeE
Confidence 68999999999999999999999999999999999999999999986 2356999999999999999999999999
Q ss_pred eEeeeCCCCCChHHHHHHHHHHHHHhcccccccccCCchHHHHHHHHHHHHHHHHHHHH
Q psy11231 76 MCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKSYN 134 (172)
Q Consensus 76 lI~~vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~~ei~~Lk~~l~~ 134 (172)
||+||||...+|+||++||+||.|||+|+|++.+|.++....+++++.|++.|+.+|..
T Consensus 324 MiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 324 MIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred EEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998888877665
No 8
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=5.2e-34 Score=245.00 Aligned_cols=110 Identities=62% Similarity=0.876 Sum_probs=106.6
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|+|+||||||+|+.++.+..+.+++|+..||+||++|++||.+|..+. .|||||+|+||+||+|+|||+|+|+||+||+
T Consensus 243 s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vs 321 (352)
T cd01364 243 GKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIATIS 321 (352)
T ss_pred EEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 799999999999999999999999999999999999999999999875 8999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcccccccccCC
Q psy11231 82 PASYNYEETISTLRYASRVKKICNKARVNQD 112 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~ 112 (172)
|...+++||++||+||+++++|+|+|.+|++
T Consensus 322 p~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 322 PASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred CCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 9999999999999999999999999999874
No 9
>KOG0244|consensus
Probab=100.00 E-value=3.1e-34 Score=264.46 Aligned_cols=148 Identities=51% Similarity=0.712 Sum_probs=136.8
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCC-CCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~-~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
+||+|||||||||..+++++|.+++||.+||.+|++||+||.+|.+.+ ..|||||||+||++|+|+||||+.|+||+||
T Consensus 215 sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCi 294 (913)
T KOG0244|consen 215 SKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACI 294 (913)
T ss_pred hhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeec
Confidence 689999999999999999999999999999999999999999998743 4699999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhcccccccccCCchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHhhH
Q psy11231 81 GPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKSYNYE-----ETISTLRYASRVK 149 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~~ei~~Lk~~l~~~~-----~~i~~~r~~~~~~ 149 (172)
||+..+..||++||+||.|+++|+|+|.+|.++....+..++.+|..|+.++.... .+++.++......
T Consensus 295 Spadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l 368 (913)
T KOG0244|consen 295 SPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTL 368 (913)
T ss_pred ChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999988875 5677666444433
No 10
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=5.4e-34 Score=243.98 Aligned_cols=102 Identities=65% Similarity=0.909 Sum_probs=97.9
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhc---CCCCCCCCCCchhhhccccCCCCCceeEeEe
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD---GKCTHIPYRNSKLTRILQDSLGGNSKTVMCA 78 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~---~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~ 78 (172)
|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|++ ++..||||||||||++|+|+|||+|+|+||+
T Consensus 233 s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~ 312 (337)
T cd01373 233 SRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIA 312 (337)
T ss_pred EEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEE
Confidence 7999999999999999999999999999999999999999999985 3458999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHHhcc
Q psy11231 79 TVGPASYNYEETISTLRYASRVKKI 103 (172)
Q Consensus 79 ~vsp~~~~~~eTl~TL~fa~r~k~i 103 (172)
||+|...+++||++||+||+|||+|
T Consensus 313 ~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 313 NVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999986
No 11
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.4e-33 Score=240.11 Aligned_cols=103 Identities=64% Similarity=0.959 Sum_probs=98.9
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCC--CCCCCCCCchhhhccccCCCCCceeEeEe
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGK--CTHIPYRNSKLTRILQDSLGGNSKTVMCA 78 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~--~~~ipyRdSkLT~lL~d~LgG~~~t~lI~ 78 (172)
.|+|+|||||||||..+.+..|.+++|+..||+||++|++||.+|++++ ..||||||||||+||+|+|||+|+|+||+
T Consensus 234 ~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~ 313 (338)
T cd01370 234 IGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIA 313 (338)
T ss_pred EEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEE
Confidence 3799999999999999999999999999999999999999999999876 38999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHHhcc
Q psy11231 79 TVGPASYNYEETISTLRYASRVKKI 103 (172)
Q Consensus 79 ~vsp~~~~~~eTl~TL~fa~r~k~i 103 (172)
||+|...+++||++||+||+|||+|
T Consensus 314 ~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 314 NISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999986
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=4.1e-33 Score=239.95 Aligned_cols=110 Identities=65% Similarity=0.916 Sum_probs=104.9
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcC-------CCCCCCCCCchhhhccccCCCCCce
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG-------KCTHIPYRNSKLTRILQDSLGGNSK 73 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~-------~~~~ipyRdSkLT~lL~d~LgG~~~ 73 (172)
.|+|+|||||||||....+..+.+++|+..||+||++|++||.+|..+ +..||||||||||++|+|+|||+++
T Consensus 240 ~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~ 319 (356)
T cd01365 240 VSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSK 319 (356)
T ss_pred EEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCce
Confidence 378999999999999999999999999999999999999999999864 3579999999999999999999999
Q ss_pred eEeEeeeCCCCCChHHHHHHHHHHHHHhccccccccc
Q psy11231 74 TVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 110 (172)
Q Consensus 74 t~lI~~vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n 110 (172)
|+||+||+|...+++||++||+||+++++|++.|++|
T Consensus 320 t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 320 TAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999999999999999875
No 13
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=99.97 E-value=1.4e-32 Score=236.04 Aligned_cols=101 Identities=42% Similarity=0.707 Sum_probs=96.3
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcC-----CCCCCCCCCchhhhccccCCCCCceeE
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG-----KCTHIPYRNSKLTRILQDSLGGNSKTV 75 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~-----~~~~ipyRdSkLT~lL~d~LgG~~~t~ 75 (172)
+|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|.+. +..||||||||||+||+|+|||+|+|+
T Consensus 240 ~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~ 319 (345)
T cd01368 240 VSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKAR 319 (345)
T ss_pred EEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEE
Confidence 378999999999999999999999999999999999999999999863 458999999999999999999999999
Q ss_pred eEeeeCCCCCChHHHHHHHHHHHHHh
Q psy11231 76 MCATVGPASYNYEETISTLRYASRVK 101 (172)
Q Consensus 76 lI~~vsp~~~~~~eTl~TL~fa~r~k 101 (172)
||+||+|...+++||++||+||.+|+
T Consensus 320 ~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 320 MIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred EEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999885
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=99.97 E-value=3.9e-32 Score=232.02 Aligned_cols=103 Identities=82% Similarity=1.223 Sum_probs=99.6
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
+|+|+||||||||+..+.+..+.+++|+..||+||.+|++||.+|.+++..|||||+||||++|+|+|||+|+|+||+||
T Consensus 231 ~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~v 310 (333)
T cd01371 231 VGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANI 310 (333)
T ss_pred EEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEe
Confidence 47999999999999999999999999999999999999999999999876799999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhcc
Q psy11231 81 GPASYNYEETISTLRYASRVKKI 103 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i 103 (172)
+|...++.||++||+||+|+|.|
T Consensus 311 sP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 311 GPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred CCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999986
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=99.97 E-value=6.6e-32 Score=229.64 Aligned_cols=103 Identities=68% Similarity=0.973 Sum_probs=99.6
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
+|+|+||||||+|+..+.+..|.+++|+..||+||++|++||.+|.+++..|||||||+||++|+|+|||+|+|+||+||
T Consensus 223 ~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~v 302 (325)
T cd01369 223 RGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICC 302 (325)
T ss_pred EEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEe
Confidence 37999999999999999999999999999999999999999999999876899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhcc
Q psy11231 81 GPASYNYEETISTLRYASRVKKI 103 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i 103 (172)
+|...+++||++||+||+|+|+|
T Consensus 303 sp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 303 SPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred CCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999986
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=99.97 E-value=7.7e-32 Score=229.01 Aligned_cols=100 Identities=54% Similarity=0.824 Sum_probs=96.5
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
.|+|+||||||||+..+.+..|.+++|+..||+||++|++||.+|..+. .|||||||+||++|+|+|||+|+|+||+||
T Consensus 220 ~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~v 298 (319)
T cd01376 220 EGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANI 298 (319)
T ss_pred EEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEe
Confidence 3799999999999999999999999999999999999999999999865 899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHh
Q psy11231 81 GPASYNYEETISTLRYASRVK 101 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k 101 (172)
+|...+++||++||+||+|+|
T Consensus 299 sp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 299 APERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999986
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=99.97 E-value=1.4e-31 Score=228.81 Aligned_cols=104 Identities=62% Similarity=0.901 Sum_probs=99.6
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCC--CCCCCCCCchhhhccccCCCCCceeEeEe
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGK--CTHIPYRNSKLTRILQDSLGGNSKTVMCA 78 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~--~~~ipyRdSkLT~lL~d~LgG~~~t~lI~ 78 (172)
.|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|..++ ..|||||+|+||+||+|+|||+++|+||+
T Consensus 236 ~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~ 315 (341)
T cd01372 236 TSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIA 315 (341)
T ss_pred eEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 3789999999999999999999999999999999999999999999865 37999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHHhccc
Q psy11231 79 TVGPASYNYEETISTLRYASRVKKIC 104 (172)
Q Consensus 79 ~vsp~~~~~~eTl~TL~fa~r~k~i~ 104 (172)
|++|...+++||++||+||+++|+|+
T Consensus 316 ~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 316 CVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999986
No 18
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=99.97 E-value=4.1e-31 Score=225.89 Aligned_cols=100 Identities=63% Similarity=0.821 Sum_probs=96.8
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|+|+||||||||+..+.+..+..++|+..||+||++|++||.+|.+++..|||||||+||++|+|+|||+|+|+||+||+
T Consensus 235 s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vs 314 (334)
T cd01375 235 SKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIW 314 (334)
T ss_pred EEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 78999999999999999999999999999999999999999999987768999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHh
Q psy11231 82 PASYNYEETISTLRYASRVK 101 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k 101 (172)
|...+++||++||+||+|++
T Consensus 315 p~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 315 VEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999984
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=99.97 E-value=3.1e-31 Score=225.26 Aligned_cols=102 Identities=60% Similarity=0.870 Sum_probs=97.7
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCC-CCCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~-~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
+|+|+||||||+|+..+.+ .+.+++|+..||+||++|++||.+|++++ ..|||||+|+||++|+|+|||+|+|+||+|
T Consensus 219 ~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~ 297 (321)
T cd01374 219 VSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICT 297 (321)
T ss_pred EEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEE
Confidence 3789999999999999988 88999999999999999999999999875 689999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhcc
Q psy11231 80 VGPASYNYEETISTLRYASRVKKI 103 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k~i 103 (172)
|+|...+++||++||+||+++++|
T Consensus 298 vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 298 ISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred eCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 20
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=99.97 E-value=4.4e-31 Score=224.73 Aligned_cols=100 Identities=53% Similarity=0.767 Sum_probs=94.5
Q ss_pred CccEEEEeCCCCCcccccC-CchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 1 MGRLHLVDLAGSERQAKTG-ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~-~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
.|+|+||||||||+....+ ..+.++.|+..||+||++|++||.+|.+++ .||||||||||++|+|+|||+|+|+||+|
T Consensus 222 ~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~ 300 (322)
T cd01367 222 LGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIAT 300 (322)
T ss_pred EEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEE
Confidence 3789999999999998765 568899999999999999999999999876 89999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHh
Q psy11231 80 VGPASYNYEETISTLRYASRVK 101 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k 101 (172)
|+|...+++||++||+||+|+|
T Consensus 301 vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 301 ISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred eCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999986
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.97 E-value=1.2e-30 Score=222.15 Aligned_cols=104 Identities=61% Similarity=0.863 Sum_probs=100.3
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
.|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|..+ ..|||||+|+||++|+|+|||+++|+||+||
T Consensus 225 ~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~v 303 (329)
T cd01366 225 RGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNI 303 (329)
T ss_pred EEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEe
Confidence 379999999999999999999999999999999999999999999987 4899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhcccc
Q psy11231 81 GPASYNYEETISTLRYASRVKKICN 105 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i~~ 105 (172)
+|...+++||++||+||+++++|++
T Consensus 304 sp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 304 SPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred CCchhhHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999976
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.97 E-value=2e-30 Score=220.91 Aligned_cols=110 Identities=70% Similarity=0.964 Sum_probs=105.1
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcC-CCCCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG-KCTHIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~-~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
.|+|+||||||+|+....+..+.+++|+..||+||.+|++||.+|+++ +..|+|||+|+||++|+++|+|+++++||+|
T Consensus 225 ~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~ 304 (335)
T smart00129 225 ASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIAN 304 (335)
T ss_pred EEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEE
Confidence 379999999999999999999999999999999999999999999985 4579999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhccccccccc
Q psy11231 80 VGPASYNYEETISTLRYASRVKKICNKARVN 110 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n 110 (172)
++|...+|+||++||+||+++++|+++|+++
T Consensus 305 vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 305 ISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 9999999999999999999999999999764
No 23
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.96 E-value=3.6e-30 Score=219.08 Aligned_cols=102 Identities=67% Similarity=0.989 Sum_probs=96.2
Q ss_pred ccEEEEeCCCCCcccccCC-chhhHHHHHhhhhhHHHHHHHHHHHhcC-CCCCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 2 GRLHLVDLAGSERQAKTGA-SGQRLKEASKINLSLSTLGNVISALVDG-KCTHIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~-~g~~~~E~~~iN~SL~~L~~vi~~L~~~-~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
|+|+||||||+|+..+.+. .+.+++|+..||+||.+|++||.+|.++ +..|||||+||||+||+|+|||+|+|+||+|
T Consensus 232 s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~ 311 (335)
T PF00225_consen 232 SRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVC 311 (335)
T ss_dssp EEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEE
T ss_pred cceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEE
Confidence 7899999999999998886 4888999999999999999999999987 4589999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhcc
Q psy11231 80 VGPASYNYEETISTLRYASRVKKI 103 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k~i 103 (172)
|+|...+|+||++||+||+++|+|
T Consensus 312 vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 312 VSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp E-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999986
No 24
>KOG0246|consensus
Probab=99.95 E-value=7e-29 Score=219.82 Aligned_cols=107 Identities=47% Similarity=0.665 Sum_probs=96.9
Q ss_pred CccEEEEeCCCCCcccccC-CchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCC-CceeEeEe
Q psy11231 1 MGRLHLVDLAGSERQAKTG-ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGG-NSKTVMCA 78 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~-~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG-~~~t~lI~ 78 (172)
+|+++||||||+||...+. ++.+...||+.||+||+||..||++|..++ .|+|||.||||++|+|+|=| |++|+||+
T Consensus 438 hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenSrTcMIA 516 (676)
T KOG0246|consen 438 HGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENSRTCMIA 516 (676)
T ss_pred EeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCCceEEEE
Confidence 4899999999999987765 455667799999999999999999998765 89999999999999999977 99999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHHhccccccc
Q psy11231 79 TVGPASYNYEETISTLRYASRVKKICNKAR 108 (172)
Q Consensus 79 ~vsp~~~~~~eTl~TL~fa~r~k~i~~~~~ 108 (172)
||||+....+.||+||+||+|+|.......
T Consensus 517 ~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 517 TISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred EeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999755443
No 25
>KOG0239|consensus
Probab=99.95 E-value=6.7e-29 Score=227.84 Aligned_cols=109 Identities=57% Similarity=0.824 Sum_probs=103.6
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|.|+|||||||||..+++..|.|++|+..||+||++||+||.+|+.+ ..|||||+||||+||+++|||+++|+|++++|
T Consensus 540 g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k-~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~is 618 (670)
T KOG0239|consen 540 GVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK-RSHIPYRNSKLTQLLQDSLGGDSKTLMFVNIS 618 (670)
T ss_pred cceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc-CCCCcccccchHHHhHhhhCCccceeeEEEeC
Confidence 68999999999999999999999999999999999999999999985 48999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcccccccccC
Q psy11231 82 PASYNYEETISTLRYASRVKKICNKARVNQ 111 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i~~~~~~n~ 111 (172)
|...++.||+++|+||.|++.+...+..-.
T Consensus 619 P~~~~~~Etl~sL~FA~rv~~~~lG~a~~~ 648 (670)
T KOG0239|consen 619 PAAAALFETLCSLRFATRVRSVELGSARKQ 648 (670)
T ss_pred ccHHHHhhhhhccchHHHhhceeccccccc
Confidence 999999999999999999999987665543
No 26
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.95 E-value=2.2e-28 Score=207.62 Aligned_cols=101 Identities=70% Similarity=0.993 Sum_probs=96.8
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCC-CCCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~-~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
.|+|+||||||+|+....+..+.++.|+..||+||.+|++||.+|..++ ..|||||+|+||++|+|+|+|+++|+||+|
T Consensus 227 ~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~ 306 (328)
T cd00106 227 SSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIAN 306 (328)
T ss_pred EEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEE
Confidence 3799999999999999999999999999999999999999999999865 589999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHh
Q psy11231 80 VGPASYNYEETISTLRYASRVK 101 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k 101 (172)
|+|...+++||++||+||+|+|
T Consensus 307 vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 307 ISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred eCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999985
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.95 E-value=1.4e-27 Score=216.56 Aligned_cols=110 Identities=63% Similarity=0.880 Sum_probs=105.6
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhc-CCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-GKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~-~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
++|+||||||||+...++..+.++.|+..||+||.+||+||.+|.+ ++..|||||||||||+|+++|||+|+|.+|+||
T Consensus 234 ~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~I 313 (568)
T COG5059 234 SKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTI 313 (568)
T ss_pred ceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEE
Confidence 4799999999999999999999999999999999999999999997 345899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhcccccccccC
Q psy11231 81 GPASYNYEETISTLRYASRVKKICNKARVNQ 111 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~ 111 (172)
+|...++++|.+||+||++++.|++.+..|.
T Consensus 314 sp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 314 SPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred cCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999999999999996
No 28
>KOG0247|consensus
Probab=99.94 E-value=4.5e-28 Score=219.35 Aligned_cols=110 Identities=38% Similarity=0.598 Sum_probs=102.8
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcC----CCCCCCCCCchhhhccccCCCCCceeEe
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG----KCTHIPYRNSKLTRILQDSLGGNSKTVM 76 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~----~~~~ipyRdSkLT~lL~d~LgG~~~t~l 76 (172)
||.|.|||||||||..++...|.|++|+++||.||++||+||.+|..+ ...+|||||||||++++.+|.|..+.+|
T Consensus 330 vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~M 409 (809)
T KOG0247|consen 330 VSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRM 409 (809)
T ss_pred EEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEE
Confidence 588999999999999999999999999999999999999999999863 2479999999999999999999999999
Q ss_pred EeeeCCCCCChHHHHHHHHHHHHHhccccccccc
Q psy11231 77 CATVGPASYNYEETISTLRYASRVKKICNKARVN 110 (172)
Q Consensus 77 I~~vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n 110 (172)
|+||+|.+++|+|+++.|+||+.++.|...+.++
T Consensus 410 IV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 410 IVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred EEecCCchhhHHHHHHHHHHHHhcccccccCccc
Confidence 9999999999999999999999999987655553
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.94 E-value=4e-27 Score=186.10 Aligned_cols=81 Identities=64% Similarity=0.982 Sum_probs=77.9
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
.|+|+||||||||+....+..+.+++|++.||+||++|++||.+|++++ .||||||||||++|+|+|||+|+|+||+||
T Consensus 106 ~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-~~vpyr~SkLT~lL~~~L~g~~~t~~i~~v 184 (186)
T cd01363 106 VGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD-SHVPYRESKLTRLLQDSLGGNSRTLMVACI 184 (186)
T ss_pred eeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC-CCCCCcccHHHHHHHHhcCCCCeEEEEEEe
Confidence 3799999999999999999999999999999999999999999999865 899999999999999999999999999999
Q ss_pred CC
Q psy11231 81 GP 82 (172)
Q Consensus 81 sp 82 (172)
||
T Consensus 185 sP 186 (186)
T cd01363 185 SP 186 (186)
T ss_pred Cc
Confidence 98
No 30
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.62 E-value=13 Score=24.33 Aligned_cols=39 Identities=31% Similarity=0.437 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHhhHhhhh
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTL-RYASRVKKICN 153 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~-r~~~~~~~~~~ 153 (172)
...+..++++++.++.+...++.+++.+ .+-+.+.+++.
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4567788899999999999999999999 66666666554
No 31
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.28 E-value=7.6 Score=25.72 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
+..+...+++|..|+.++..+.+.+..++..
T Consensus 24 n~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 24 NDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456667788888888888888888877643
No 32
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=63.02 E-value=5.5 Score=28.61 Aligned_cols=80 Identities=11% Similarity=0.171 Sum_probs=51.7
Q ss_pred CCCCCCchhhhccccCCCCCceeEeEeeeCCCCCChHHHHHHHHHHHHHhcccccccccCCchHHHHHHHHHHHHHHHHH
Q psy11231 52 HIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKK 131 (172)
Q Consensus 52 ~ipyRdSkLT~lL~d~LgG~~~t~lI~~vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~~ei~~Lk~~ 131 (172)
+.|..+..-.......||-..-+-|+-.+.|. .-.++..||-|-..++.. .|+ .---..|..|+.++..++.|
T Consensus 21 yFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~--~R~~a~~Sl~yEA~~R~~--dPv---~Gc~G~i~~L~~ql~~~~~e 93 (101)
T PF03195_consen 21 YFPADQPQRFANVHKVFGVSNISKMLQELPPE--QREDAMRSLVYEANARAR--DPV---YGCVGIISQLQQQLQQLQAE 93 (101)
T ss_pred CCChhHHHHHHHHHHHHchhHHHHHHHhCCcc--chhhHHHHHHHHHHhhcc--CCC---cchHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555556666555 468999999998887765 111 12246788888888888888
Q ss_pred HHHHHHH
Q psy11231 132 SYNYEET 138 (172)
Q Consensus 132 l~~~~~~ 138 (172)
+...+.+
T Consensus 94 l~~~~~~ 100 (101)
T PF03195_consen 94 LALVRAQ 100 (101)
T ss_pred HHHHHcc
Confidence 8777654
No 33
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=62.04 E-value=19 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
+..+.+|..+|+.++..++.++...+..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567888888999999888888877655
No 34
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=60.17 E-value=30 Score=23.14 Aligned_cols=41 Identities=29% Similarity=0.376 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcC
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRYASRVKKICNKA 155 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~~~~~~ 155 (172)
...+..++.++.+++.+...++.+++.+.+-+++.+.+...
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~ 70 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQ 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 44667888999999999999999999999988888888755
No 35
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=59.48 E-value=34 Score=24.80 Aligned_cols=29 Identities=24% Similarity=0.119 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRYAS 146 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~ 146 (172)
+..+++|+.+|+.++..++.+...++.+.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777776666666554
No 36
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=55.83 E-value=16 Score=23.45 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 119 IKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
-+++.+++++++++..++.+++.+|
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777888888888887777654
No 37
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=55.53 E-value=34 Score=23.90 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRYASRVKK 150 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~ 150 (172)
.-+.+++|...++..+..+++++..+|..+++.-
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK~~ 70 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKLLRKENRKSM 70 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhhhhH
Confidence 4467889999999999999999999998877654
No 38
>PRK00295 hypothetical protein; Provisional
Probab=54.86 E-value=33 Score=22.67 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
+..+-+.+++|..|+.++..+.+.+..+.
T Consensus 25 n~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 25 NDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777777777777777776655
No 39
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.74 E-value=30 Score=24.82 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
...+..++.++++++.+...++.++..++++
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4456677888888888899999999998875
No 40
>PRK02793 phi X174 lysis protein; Provisional
Probab=53.87 E-value=28 Score=23.27 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRYAS 146 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~ 146 (172)
+..+-+.+++|..|+.+++.+.+.+..++.+.
T Consensus 28 n~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 28 NVTVTAHEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44556677777888888877777777665433
No 41
>PRK00846 hypothetical protein; Provisional
Probab=53.38 E-value=32 Score=23.56 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
+..+...+++|..|+.++..+.+.+..+.
T Consensus 33 N~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 33 SEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555677778888888887777777776
No 42
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=52.79 E-value=53 Score=20.27 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11231 120 KYQKEISELKKKSYNYEETISTLRYAS 146 (172)
Q Consensus 120 ~l~~ei~~Lk~~l~~~~~~i~~~r~~~ 146 (172)
.|+.++..|+.+++.++...++++.+.
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655443
No 43
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=52.66 E-value=43 Score=23.14 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcC
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRYASRVKKICNKA 155 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~~~~~~ 155 (172)
.+.++++++.+++.+...+.-+++.+.+-+++.+++...
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~~~ 81 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIAREK 81 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHc
Confidence 477889999999999999999999999999999998854
No 44
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=51.73 E-value=18 Score=23.72 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCCCCceEee------eccccc
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRYASRVKKICNKARPPGSYVLWV------GVNSWV 171 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 171 (172)
..++++||..|+.++.. +.+.--+......++|+ ...|-++-.. +.|.|.
T Consensus 4 ~~~l~~ei~~L~~el~~--~r~~vS~a~~~li~y~~--~~~DPll~~~~~p~~~~~NPw~ 59 (68)
T PF00631_consen 4 KDQLKREIEQLRQELER--ERIKVSKACKELIEYCE--STPDPLLPGPWGPPSSSSNPWI 59 (68)
T ss_dssp HHHHHHHHHHHHHHHTS------HHHHHHHHHHHHH--GTC-HHHHT--SS--GGGSTTC
T ss_pred HHHHHHHHHHHHHHHcc--cceeHHHHHHHHHHHhc--CCCCceeCCCCCCCCccCCCCc
Confidence 45788889889988887 44555567777888887 3355554333 347664
No 45
>PRK04325 hypothetical protein; Provisional
Probab=51.56 E-value=33 Score=23.09 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
+..+.+.+++|..|+.+++.+.+.+..+.
T Consensus 29 N~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 29 NATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666777777777777766666554
No 46
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=51.03 E-value=45 Score=30.02 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcccccccccCCchHHHHHHHHHHHHHHHH
Q psy11231 91 ISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKK 130 (172)
Q Consensus 91 l~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~~ei~~Lk~ 130 (172)
--.|+|-++.+-++++|+.+.-..+.-+.+|+.+|.+|+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~l~fe~pi~ele~ki~el~~ 94 (431)
T PLN03230 55 TGALKILNRFKPLKNKPKPVTLPFEKPIVDLENRIDEVRE 94 (431)
T ss_pred ccHHHHHHhcCCCCCCCCCCccchhhHHHHHHHHHHHHHh
Confidence 3468899999999999987776666667777777777654
No 47
>PRK00736 hypothetical protein; Provisional
Probab=49.61 E-value=41 Score=22.22 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
+..+.+.+++|..|+.++..+.+.+..+.
T Consensus 25 n~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 25 SDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677777777777777777776654
No 48
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.79 E-value=68 Score=26.77 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcccccccccCCch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 88 EETISTLRYASRVKKICNKARVNQDPK------DALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 88 ~eTl~TL~fa~r~k~i~~~~~~n~~~~------~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
.=++.++.++..........+...... ...++.++++..+|+.|+..++..++.++
T Consensus 23 s~~~~~~l~~~~~a~~~q~~k~~~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 23 SISLAMLLAGVMLAAVFQTSKGESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666665555554443333222 23444566666666666666666666665
No 49
>PRK11546 zraP zinc resistance protein; Provisional
Probab=43.98 E-value=1e+02 Score=23.59 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcccccccccC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 91 ISTLRYASRVKKICNKARVNQ-DPKDALLIKYQKEISELKKKSYNYEETI 139 (172)
Q Consensus 91 l~TL~fa~r~k~i~~~~~~n~-~~~~~~i~~l~~ei~~Lk~~l~~~~~~i 139 (172)
...||=.-.+|+-.-...... .|+...|+.+.+||.+|+.+|.++..+.
T Consensus 63 t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 63 TSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544444555444444433 5566779999999999999888766533
No 50
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=42.22 E-value=81 Score=19.32 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
..+..+..-+.+||..++.+-.++.-+|+.
T Consensus 8 ~ql~~l~~~l~elk~~l~~Q~kE~~~LRnt 37 (45)
T PF11598_consen 8 KQLSELNQMLQELKELLRQQIKETRFLRNT 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888888888753
No 51
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=42.17 E-value=67 Score=26.03 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 91 ISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 91 l~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
+..-.|+++++.|........--.+..+.+++.+|...+.++....++++.+-.
T Consensus 37 ~Gm~~~~~~~~~i~~~a~~DdPyAD~~L~~iEe~i~~~~~~l~~~~~~l~~~l~ 90 (217)
T PF08900_consen 37 IGMPGFASRLNRIWRDARQDDPYADWWLLRIEEKINEARQELQELIARLDALLA 90 (217)
T ss_pred cCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688999999887765544446788889999999999888888888876543
No 52
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=41.17 E-value=96 Score=19.92 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
.+.+|..++..|..++..+...++.++..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~ 32 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRAD 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666543
No 53
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.60 E-value=1e+02 Score=22.77 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=16.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 112 DPKDALLIKYQKEISELKKKSYNYEETISTL 142 (172)
Q Consensus 112 ~~~~~~i~~l~~ei~~Lk~~l~~~~~~i~~~ 142 (172)
.+....+.+|..+|+.+..++..++.++.++
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARL 42 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555554
No 54
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=38.87 E-value=81 Score=25.72 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 90 TISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 90 Tl~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
.+....|+++++.|........--.+-.+.+++..|...+.++..+.+++...-
T Consensus 34 IiGl~~f~s~~~~i~~~a~~DdPyAD~~Ll~~E~~l~~~~~~l~~~~~~l~~~l 87 (216)
T TIGR03761 34 IIGMPGFISRLNRINQASEQDDPYADWALLRIEEKLLSARQEMQALLQRLDDLL 87 (216)
T ss_pred CcCcHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999998777555555677888888889888888888777777554
No 55
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=38.73 E-value=1.1e+02 Score=21.48 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=29.7
Q ss_pred HHHHHHHhcccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 94 LRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKSYNYEETISTL 142 (172)
Q Consensus 94 L~fa~r~k~i~~~~~~n~~~~~~~i~~l~~ei~~Lk~~l~~~~~~i~~~ 142 (172)
+.-+.++.++...-.+|... .+.+-.|-.++..|+.+++.++..+.++
T Consensus 50 l~r~~~a~rL~~dl~in~~g-ialvl~LLd~i~~Lr~el~~L~~~l~~~ 97 (101)
T PRK10265 50 AIVVQRAVRLRHELALDWPG-IAVALTLLDEIAHLKQENRLLRQRLSRF 97 (101)
T ss_pred HHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554444444432 3466777778888888888887766544
No 56
>PRK02119 hypothetical protein; Provisional
Probab=38.70 E-value=69 Score=21.46 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
+..+.+.+++|..|+.+++.+.+.+..+..
T Consensus 29 N~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 29 NQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445566777777777777777777766553
No 57
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=38.24 E-value=65 Score=20.40 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCCCCceE--eeeccccc
Q psy11231 120 KYQKEISELKKKSYNYEETISTLRYASRVKKICNKARPPGSYVL--WVGVNSWV 171 (172)
Q Consensus 120 ~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 171 (172)
.+++++..|+.++..- .+.--+.+....++|++....|-++- +-+.|-|.
T Consensus 3 ~~~~~veqLr~el~~~--RikvS~a~~~l~~y~e~~~~~Dpll~g~~~~~NP~~ 54 (57)
T cd00068 3 QLKKEVEQLRKELSRE--RLKVSKAAAELLKYCEQNAENDPLLTGPPSPSNPWI 54 (57)
T ss_pred HHHHHHHHHHHHHCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Confidence 5677888888887664 34444677888889988876666653 32568774
No 58
>smart00338 BRLZ basic region leucin zipper.
Probab=38.20 E-value=1.1e+02 Score=19.53 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
.+..|..++..|+.++..+..++..++
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555554444
No 59
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=37.97 E-value=72 Score=20.73 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q psy11231 124 EISELKKKSYNYEETISTLRYASR 147 (172)
Q Consensus 124 ei~~Lk~~l~~~~~~i~~~r~~~~ 147 (172)
|+.-||+++..+++.++.+...+.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~ 38 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENN 38 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 60
>PRK04406 hypothetical protein; Provisional
Probab=37.86 E-value=66 Score=21.71 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
+..+-..+++|..|+.+++.+.+.+..+.
T Consensus 31 N~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 31 NDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555667777777777777766666554
No 61
>PRK14127 cell division protein GpsB; Provisional
Probab=37.19 E-value=77 Score=23.09 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11231 119 IKYQKEISELKKKSYNYEETISTLRYAS 146 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i~~~r~~~ 146 (172)
..|.+|+..|+.++..+++++..++..-
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466777778888877777777776533
No 62
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=37.06 E-value=82 Score=17.89 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 119 IKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
.+|-.|.+.|+..-..++..++++||.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455666777777777788888888764
No 63
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=35.99 E-value=62 Score=28.43 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEET 138 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~ 138 (172)
...+.+|++||+.|+.|+..++++
T Consensus 41 ~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 41 QQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888888777
No 64
>KOG3119|consensus
Probab=33.88 E-value=71 Score=26.73 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRYASR 147 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~ 147 (172)
...+..|++|...|+.++..++.++..++....
T Consensus 221 ~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556888888888888888888888875544
No 65
>KOG4603|consensus
Probab=33.79 E-value=83 Score=25.04 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRYASR 147 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~ 147 (172)
+.+++++|..|+.+.+.+.+.+..++.|-+
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~~ 147 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGTN 147 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456788888888888888888888877643
No 66
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.66 E-value=1.9e+02 Score=20.82 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
....|+.++..+..++..+...+..+...
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~ 35 (129)
T cd00584 7 QLQVLQQEIEELQQELARLNEAIAEYEQA 35 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555433
No 67
>KOG1655|consensus
Probab=32.37 E-value=69 Score=25.97 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh
Q psy11231 119 IKYQKEISELKKKSYNYEETISTLRYASRVKKI 151 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~~ 151 (172)
...+..|.+|-.+|+.|+++|+.+|.|....++
T Consensus 29 dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~ 61 (218)
T KOG1655|consen 29 DSVEKKISKLDAELCKYKDQIKKTRPGPAQNAL 61 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHH
Confidence 456788899999999999999999877655544
No 68
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=31.00 E-value=62 Score=17.04 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11231 125 ISELKKKSYNYEETIS 140 (172)
Q Consensus 125 i~~Lk~~l~~~~~~i~ 140 (172)
+..++..+..++.+++
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 69
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.65 E-value=1.1e+02 Score=23.36 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy11231 120 KYQKEISELKKKSYNYEETISTLRYASRV 148 (172)
Q Consensus 120 ~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~ 148 (172)
++..+|..|+.++..+++.+..++.+...
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46777777777777777777777764433
No 70
>PF15058 Speriolin_N: Speriolin N terminus
Probab=30.28 E-value=79 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.083 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 114 KDALLIKYQKEISELKKKSYNYEETIST 141 (172)
Q Consensus 114 ~~~~i~~l~~ei~~Lk~~l~~~~~~i~~ 141 (172)
...+|++|-+|.++||++++.++|...-
T Consensus 10 lrhqierLv~ENeeLKKlVrLirEN~eL 37 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLVRLIRENHEL 37 (200)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3568888999999999999988876653
No 71
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=30.28 E-value=95 Score=26.55 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCCCC
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRYASRVKKICNKARPPGS 160 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~ 160 (172)
...+.+.+..+..+...+...+.+|+.++..++..++.++.+-|..
T Consensus 42 ~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi~vfs~akyP~~ 87 (297)
T PF11945_consen 42 SARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAITVFSPAKYPAP 87 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccEEEeCcccCCCc
Confidence 4567788888999999999999999999999998888888887654
No 72
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.12 E-value=1.3e+02 Score=20.54 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
+...+.+|+.|+.++....+-+..+++
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777776663
No 73
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=29.09 E-value=1.2e+02 Score=22.60 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCC
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETISTLRYASRVKKICNKAR 156 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~~~~~~~ 156 (172)
..+..|+..|.+-+.++..++.++..+.+..|+..++....
T Consensus 67 ~ei~~Le~kIs~q~~e~~dlkqeV~dLss~eRIldiAkk~g 107 (120)
T COG4839 67 GEITDLESKISEQKTENDDLKQEVKDLSSPERILDIAKKAG 107 (120)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHhccHHHHHHHHHHcc
Confidence 35677888888888899999999999999999999886543
No 74
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.51 E-value=91 Score=28.62 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETIS 140 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~ 140 (172)
.|.+|++|+++||+++..+++.++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccc
Confidence 444555555555555444444333
No 75
>KOG4301|consensus
Probab=28.47 E-value=1.5e+02 Score=26.16 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=38.8
Q ss_pred HHHHHHHHhcccccccccCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 93 TLRYASRVKKICNKARVNQDPK---DALLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 93 TL~fa~r~k~i~~~~~~n~~~~---~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
.-+||.+...-...|..+.... ....++++.+|+.|+.+.+++..++.+++.
T Consensus 378 ~ar~aa~ls~e~~~p~~~p~d~nf~~davkq~r~lia~lE~~n~~i~~E~~rl~l 432 (434)
T KOG4301|consen 378 IARYAADLSTEAADPYRQPEDENFENDAVKQQRQLIAELENKNREILQEIQRLRL 432 (434)
T ss_pred HHHHHhhhccccCCCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567776666666666655332 467888999999999999999999998874
No 76
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=28.22 E-value=3.2e+02 Score=25.54 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hHhhHhhhhcCCCCCCceEeee
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRY---------------ASRVKKICNKARPPGSYVLWVG 166 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~---------------~~~~~~~~~~~~~~~~~~~~~~ 166 (172)
...++++++++.++++++...+++++.+.. .....+..+.....|.++..+|
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~G 280 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEG 280 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEE
Confidence 455666666666666666666666665433 3344444455554555555543
No 77
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.99 E-value=1.7e+02 Score=18.73 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTL 142 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~ 142 (172)
.+..+++|+.++++.+..+++.+.++
T Consensus 15 ~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 15 SINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666555443
No 78
>KOG0463|consensus
Probab=27.74 E-value=29 Score=31.25 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=13.8
Q ss_pred cEEEEeCCCCCcccccC
Q psy11231 3 RLHLVDLAGSERQAKTG 19 (172)
Q Consensus 3 rL~~VDLAGsEr~~~~~ 19 (172)
-++||||||-|+.-++.
T Consensus 220 viTFIDLAGHEkYLKTT 236 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTT 236 (641)
T ss_pred eEEEEeccchhhhhhee
Confidence 37899999999876554
No 79
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=27.73 E-value=1.5e+02 Score=18.17 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
.+..++.++..|..+...+..++..|+
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566667777777777777666654
No 80
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.29 E-value=1.5e+02 Score=23.11 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
....+.+|+++++.++...+.+++.++..
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777777776666544
No 81
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.25 E-value=2.2e+02 Score=19.87 Aligned_cols=36 Identities=25% Similarity=0.169 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCC
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRYASRVKKICNKAR 156 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~~~~~~~ 156 (172)
+.+|++|+..|+.|....+.+++.. .-.++-.+..+
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~---~vrqknee~~~ 67 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNA---KVRQKNEENTR 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHhhc
Confidence 5667777777777777777666644 34444444333
No 82
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.90 E-value=1.9e+02 Score=19.87 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
.|.-|+-||.+||.+...+.+++..++++
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~ 47 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQ 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777766666666655443
No 83
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.60 E-value=1.9e+02 Score=21.92 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhHhhHhh
Q psy11231 119 IKYQKEISELKKKSYNYEETISTL--RYASRVKKI 151 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i~~~--r~~~~~~~~ 151 (172)
.+++.|++.+|.++..+++++... ++++..++.
T Consensus 37 ~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl 71 (138)
T COG3105 37 QKLQYELEKVKAQLDEYRQELVKHFARSAELLKTL 71 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999998888764 455554443
No 84
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.26 E-value=1.8e+02 Score=18.42 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 119 IKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
..|..+...|+.++..+..++..+.
T Consensus 36 ~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 36 EELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555554444
No 85
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=25.98 E-value=1.7e+02 Score=20.42 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 119 IKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
.+++.|+...+.++...+..+.+++|.
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr 30 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENR 30 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666655543
No 86
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.97 E-value=1.8e+02 Score=21.02 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
...++.+..++++++.++...++++..++.
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 86 EERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777788888888888777764
No 87
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=25.36 E-value=1.9e+02 Score=20.88 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
.+..++++++.|+.+...++.+++.++.+
T Consensus 58 qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 58 QIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44477888888999999999999999888
No 88
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=25.34 E-value=1.7e+02 Score=17.97 Aligned_cols=36 Identities=11% Similarity=0.302 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhh
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRYASRVKKICN 153 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~~~~ 153 (172)
+.+|+.-+.+|.+.--.+++.+..+..|-...+.|.
T Consensus 5 ~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~ 40 (53)
T PF02609_consen 5 MERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQ 40 (53)
T ss_dssp HHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555566666655555555554
No 89
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=25.11 E-value=1.6e+02 Score=18.95 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETIS 140 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~ 140 (172)
.+.+|++++..++.++..++..++
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444555555555555555544443
No 90
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=24.96 E-value=1.3e+02 Score=19.01 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11231 123 KEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 123 ~ei~~Lk~~l~~~~~~i~~~r 143 (172)
.+|..|..+...+..+++..+
T Consensus 29 ~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 29 KRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444555555555444
No 91
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.50 E-value=1.9e+02 Score=24.06 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRYAS 146 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~ 146 (172)
...+|++|+..++.++..++.+++.++..+
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666555443
No 92
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=24.40 E-value=2.1e+02 Score=18.61 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy11231 119 IKYQKEISELKKKSYNYEETISTLRYASR 147 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~ 147 (172)
+..-.|-..||.++..++++++-++.+..
T Consensus 6 r~VL~ERNeLK~~v~~leEEL~~yk~~~~ 34 (60)
T PF11461_consen 6 REVLQERNELKARVFLLEEELAYYKSELL 34 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34444557788888888888888876543
No 93
>KOG4797|consensus
Probab=24.31 E-value=2.9e+02 Score=20.27 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHh
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETISTLRYASRVKK 150 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~ 150 (172)
.++-.-++|++-||.+++.+++..+.++-.+.+-+
T Consensus 60 HLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 60 HLMFAVREEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777788888888877777766655433
No 94
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=23.89 E-value=96 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=22.9
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHHhcCC
Q psy11231 23 QRLKEASKINLSLSTLGNVISALVDGK 49 (172)
Q Consensus 23 ~~~~E~~~iN~SL~~L~~vi~~L~~~~ 49 (172)
....|-..||.+|-.|..|+..|-++.
T Consensus 23 ~~~~E~~~ins~LD~Lns~LD~LE~rn 49 (83)
T PF03670_consen 23 FDEEEYAAINSMLDQLNSCLDHLEQRN 49 (83)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346688999999999999999997653
No 95
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.73 E-value=1.8e+02 Score=20.06 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 114 KDALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 114 ~~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
....+..++++++.++.++..++.+++.++
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 97 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALE 97 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888777777776655
No 96
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.65 E-value=1.7e+02 Score=22.23 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTL 142 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~ 142 (172)
+..|+.++..|+.+...++.++..+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444
No 97
>PLN02678 seryl-tRNA synthetase
Probab=23.58 E-value=1.5e+02 Score=26.75 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCCCC
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETISTLRYASRVKKICNKARPPGS 160 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~~~~~~~~~~~ 160 (172)
..++.+.++|..+..++..+++++.. ....++.+..|++|.|.
T Consensus 78 ~~~~~Lk~ei~~le~~~~~~~~~l~~--~~~~iPNi~~~~VP~G~ 120 (448)
T PLN02678 78 AETKELKKEITEKEAEVQEAKAALDA--KLKTIGNLVHDSVPVSN 120 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCCCCccCCCCC
Confidence 35667788888888888888888874 56788999999998773
No 98
>PRK01203 prefoldin subunit alpha; Provisional
Probab=23.51 E-value=2.3e+02 Score=21.25 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTL 142 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~ 142 (172)
.++-++.++..|+.++..++.....+
T Consensus 8 ~~~~~~~q~e~l~~ql~~L~~a~se~ 33 (130)
T PRK01203 8 QLNYIESLISSVDSQIDSLNKTLSEV 33 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444
No 99
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=23.44 E-value=2.4e+02 Score=20.17 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.9
Q ss_pred hccccCCCCCceeEeEeeeCCCC
Q psy11231 62 RILQDSLGGNSKTVMCATVGPAS 84 (172)
Q Consensus 62 ~lL~d~LgG~~~t~lI~~vsp~~ 84 (172)
..|.|++|.|-+|-+|+-+.+..
T Consensus 15 k~l~dy~GkNEKtKiivKl~~~g 37 (98)
T PF11069_consen 15 KKLSDYIGKNEKTKIIVKLQKRG 37 (98)
T ss_pred CcHHHhcCCCcceeEEEEeccCC
Confidence 46788999999999999998765
No 100
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=22.62 E-value=1.5e+02 Score=25.99 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
..-.|+.|...||.|...+..+++++.+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777777777777643
No 101
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.03 E-value=44 Score=26.18 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11231 119 IKYQKEISELKKKSYNYEETI 139 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i 139 (172)
..|+.++++||+|++.++.++
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346666666777777777666
No 102
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.73 E-value=95 Score=28.49 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
+..++ +|++|++||.++++++..+.
T Consensus 27 ~~~~q-kie~L~kql~~Lk~q~~~l~ 51 (489)
T PF11853_consen 27 IDLLQ-KIEALKKQLEELKAQQDDLN 51 (489)
T ss_pred hHHHH-HHHHHHHHHHHHHHhhcccc
Confidence 33444 99999999999999988554
No 103
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=20.87 E-value=1e+02 Score=27.76 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 119 IKYQKEISELKKKSYNYEETIST 141 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i~~ 141 (172)
..|++||++|+++|..++.....
T Consensus 421 ~~LQkEIedLreQLaamqsl~~k 443 (445)
T PF15483_consen 421 LVLQKEIEDLREQLAAMQSLADK 443 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35899999999999887765543
No 104
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.67 E-value=2.5e+02 Score=18.14 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETIST 141 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~ 141 (172)
.+.+|+..|..|+.|+...+..+..
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666655553
No 105
>PHA00728 hypothetical protein
Probab=20.56 E-value=1.4e+02 Score=22.35 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETIST 141 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~ 141 (172)
..+.+|++|..+||.++..++..++.
T Consensus 5 teveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 35678899999999999988877764
No 106
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.42 E-value=2.6e+02 Score=18.16 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
..++.-+..+..|..++..++++++.+|
T Consensus 32 ~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 32 SKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555666667777777777766655
No 107
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.30 E-value=2.3e+02 Score=20.30 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHH----HHHHHHHHH
Q psy11231 123 KEISELKKKSYN----YEETISTLR 143 (172)
Q Consensus 123 ~ei~~Lk~~l~~----~~~~i~~~r 143 (172)
++++.|+.++.. .+++|+.+.
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le 96 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELE 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666555 555555544
No 108
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=20.27 E-value=1.5e+02 Score=23.14 Aligned_cols=22 Identities=5% Similarity=0.128 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEET 138 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~ 138 (172)
.-.+|+.|+.++.+++..+.+-
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqv 51 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQV 51 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
Done!