Query psy11231
Match_columns 172
No_of_seqs 181 out of 1460
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 21:32:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 4.9E-41 1.7E-45 289.1 8.4 128 2-129 232-360 (365)
2 3cob_A Kinesin heavy chain-lik 100.0 1.4E-40 4.8E-45 286.6 11.1 128 2-139 227-354 (369)
3 3b6u_A Kinesin-like protein KI 100.0 7.7E-41 2.6E-45 288.4 7.1 122 1-122 251-372 (372)
4 2vvg_A Kinesin-2; motor protei 100.0 1E-39 3.6E-44 279.5 6.8 114 1-115 234-347 (350)
5 3bfn_A Kinesin-like protein KI 100.0 1E-39 3.5E-44 282.6 6.3 120 2-122 247-366 (388)
6 1x88_A Kinesin-like protein KI 100.0 4.6E-39 1.6E-43 276.4 8.5 109 2-111 250-358 (359)
7 1goj_A Kinesin, kinesin heavy 100.0 5.7E-39 1.9E-43 275.4 8.9 114 2-115 229-342 (355)
8 2wbe_C Bipolar kinesin KRP-130 100.0 1.2E-38 4.1E-43 275.0 5.5 111 2-113 260-371 (373)
9 1t5c_A CENP-E protein, centrom 100.0 1.9E-38 6.4E-43 271.7 6.3 114 1-116 227-341 (349)
10 2zfi_A Kinesin-like protein KI 100.0 2.8E-38 9.7E-43 272.1 7.1 111 1-111 241-362 (366)
11 2owm_A Nckin3-434, related to 100.0 4.6E-38 1.6E-42 276.4 8.5 113 2-116 293-427 (443)
12 1f9v_A Kinesin-like protein KA 100.0 2.1E-37 7.2E-42 265.0 8.5 107 2-108 238-346 (347)
13 3nwn_A Kinesin-like protein KI 100.0 6.9E-38 2.4E-42 269.0 5.0 102 2-103 258-359 (359)
14 1ry6_A Internal kinesin; kines 100.0 3.9E-37 1.3E-41 264.5 9.3 111 1-112 229-340 (360)
15 3t0q_A AGR253WP; kinesin, alph 100.0 5.4E-37 1.9E-41 262.6 10.0 106 2-107 241-348 (349)
16 3lre_A Kinesin-like protein KI 100.0 4.3E-37 1.5E-41 263.8 7.7 103 1-103 251-355 (355)
17 4etp_A Kinesin-like protein KA 100.0 1.3E-36 4.3E-41 264.6 10.4 107 2-108 294-402 (403)
18 2nr8_A Kinesin-like protein KI 100.0 3E-37 1E-41 264.9 5.4 102 2-103 257-358 (358)
19 2h58_A Kinesin-like protein KI 100.0 8.8E-37 3E-41 259.6 8.1 103 1-104 227-329 (330)
20 1bg2_A Kinesin; motor protein, 100.0 5.2E-37 1.8E-41 260.5 6.2 101 2-103 225-325 (325)
21 3dc4_A Kinesin-like protein NO 100.0 1.2E-36 4.2E-41 259.9 8.3 106 2-108 235-340 (344)
22 3gbj_A KIF13B protein; kinesin 100.0 1.8E-36 6.1E-41 259.9 6.9 102 1-102 243-349 (354)
23 2rep_A Kinesin-like protein KI 100.0 3.7E-36 1.3E-40 259.6 8.5 101 2-103 272-376 (376)
24 4a14_A Kinesin, kinesin-like p 100.0 2.7E-36 9.3E-41 257.8 7.6 100 2-101 243-344 (344)
25 4h1g_A Maltose binding protein 100.0 1.3E-35 4.6E-40 273.2 9.0 104 1-104 609-712 (715)
26 3kin_B Kinesin heavy chain; mo 100.0 3.4E-35 1.1E-39 216.3 9.1 113 32-144 1-117 (117)
27 2heh_A KIF2C protein; kinesin, 100.0 3.8E-35 1.3E-39 254.0 8.5 105 2-107 280-386 (387)
28 2kin_B Kinesin; motor protein, 100.0 2.2E-35 7.6E-40 211.4 4.5 97 29-125 2-99 (100)
29 1v8k_A Kinesin-like protein KI 100.0 5.5E-35 1.9E-39 254.5 7.2 106 2-108 300-407 (410)
30 3u06_A Protein claret segregat 100.0 1.6E-34 5.3E-39 252.0 7.8 102 1-107 285-386 (412)
31 3mq7_A Bone marrow stromal ant 80.0 4.3 0.00015 29.0 5.6 33 116-148 71-103 (121)
32 3v86_A De novo design helix; c 75.8 4.6 0.00016 20.7 3.5 24 119-142 3-26 (27)
33 1kd8_B GABH BLL, GCN4 acid bas 73.7 8.3 0.00028 21.7 4.5 28 117-144 2-29 (36)
34 4dzn_A Coiled-coil peptide CC- 73.7 8.4 0.00029 20.6 4.8 27 118-144 4-30 (33)
35 2wq1_A General control protein 68.1 13 0.00044 20.5 4.5 27 118-144 2-28 (33)
36 3ra3_B P2F; coiled coil domain 67.9 7.7 0.00026 20.0 3.3 25 118-142 2-26 (28)
37 3m48_A General control protein 64.9 10 0.00035 20.9 3.6 26 118-143 2-27 (33)
38 2wg5_A General control protein 60.1 8.9 0.00031 26.7 3.6 28 117-144 8-35 (109)
39 1kd8_A GABH AIV, GCN4 acid bas 59.2 16 0.00054 20.5 3.8 27 118-144 3-29 (36)
40 1uo4_A General control protein 59.1 16 0.00055 20.2 3.8 27 118-144 3-29 (34)
41 3nmd_A CGMP dependent protein 58.0 23 0.0008 23.0 5.0 26 118-143 35-60 (72)
42 3c3f_A Alpha/beta peptide with 57.6 22 0.00076 19.6 4.5 27 118-144 3-29 (34)
43 3nmd_A CGMP dependent protein 57.1 16 0.00056 23.7 4.2 31 114-144 38-68 (72)
44 3c3g_A Alpha/beta peptide with 56.1 23 0.0008 19.4 4.5 26 118-143 2-27 (33)
45 2yy0_A C-MYC-binding protein; 52.9 24 0.00082 21.4 4.3 29 116-144 19-47 (53)
46 2w6a_A ARF GTPase-activating p 51.1 42 0.0015 20.9 5.3 32 115-146 26-57 (63)
47 1hjb_A Ccaat/enhancer binding 50.5 13 0.00046 25.0 3.1 30 115-144 42-71 (87)
48 2hy6_A General control protein 49.0 30 0.001 19.1 3.8 27 118-144 3-29 (34)
49 2oxj_A Hybrid alpha/beta pepti 48.8 33 0.0011 19.0 4.5 26 118-143 3-28 (34)
50 2z5i_A TM, general control pro 48.3 42 0.0015 20.1 4.9 29 115-143 11-39 (52)
51 1ci6_A Transcription factor AT 46.7 46 0.0016 20.6 5.0 27 117-143 31-57 (63)
52 2dgc_A Protein (GCN4); basic d 45.9 44 0.0015 20.8 4.9 28 116-143 30-57 (63)
53 1a93_B MAX protein, coiled coi 45.5 35 0.0012 18.9 3.7 23 119-141 10-32 (34)
54 1t2k_D Cyclic-AMP-dependent tr 45.3 50 0.0017 20.1 5.0 27 117-143 30-56 (61)
55 2r2v_A GCN4 leucine zipper; co 45.2 38 0.0013 18.7 4.5 27 118-144 3-29 (34)
56 2bni_A General control protein 45.0 37 0.0013 18.7 3.8 26 118-143 3-28 (34)
57 1gu4_A CAAT/enhancer binding p 44.4 18 0.0006 23.8 2.8 30 115-144 42-71 (78)
58 3kpe_A Fusion glycoprotein F0; 41.4 57 0.002 19.7 5.0 31 121-151 2-32 (51)
59 1dh3_A Transcription factor CR 40.6 59 0.002 19.6 4.7 28 116-143 22-49 (55)
60 2wt7_A Proto-oncogene protein 39.9 64 0.0022 19.8 5.0 26 118-143 32-57 (63)
61 2oqq_A Transcription factor HY 39.8 54 0.0019 18.9 5.1 30 117-146 4-33 (42)
62 1uii_A Geminin; human, DNA rep 39.1 61 0.0021 21.5 4.9 22 120-141 57-78 (83)
63 3efg_A Protein SLYX homolog; x 39.0 25 0.00087 23.0 3.0 30 115-144 34-63 (78)
64 3i00_A HIP-I, huntingtin-inter 38.2 59 0.002 23.0 5.1 25 112-136 11-35 (120)
65 1t6f_A Geminin; coiled-coil, c 37.8 54 0.0018 18.3 4.0 23 124-146 8-30 (37)
66 1am9_A Srebp-1A, protein (ster 36.3 69 0.0024 20.7 4.9 28 116-143 50-77 (82)
67 2zvf_A Alanyl-tRNA synthetase; 34.0 98 0.0033 22.3 6.0 31 113-143 29-59 (171)
68 1dip_A Delta-sleep-inducing pe 34.0 40 0.0014 22.0 3.2 20 126-145 18-37 (78)
69 1t3j_A Mitofusin 1; coiled coi 31.2 93 0.0032 21.2 4.9 26 116-141 47-72 (96)
70 1nkp_B MAX protein, MYC proto- 31.2 87 0.003 20.1 4.7 25 117-141 48-72 (83)
71 3twe_A Alpha4H; unknown functi 30.7 58 0.002 16.6 3.6 18 121-138 6-23 (27)
72 1ci6_A Transcription factor AT 30.0 99 0.0034 19.0 4.9 29 117-145 24-52 (63)
73 1jnm_A Proto-oncogene C-JUN; B 28.3 1E+02 0.0036 18.7 4.9 26 118-143 24-49 (62)
74 1zme_C Proline utilization tra 28.0 62 0.0021 19.6 3.4 25 115-139 43-67 (70)
75 2xdj_A Uncharacterized protein 27.8 1.3E+02 0.0044 19.7 5.1 31 116-146 27-57 (83)
76 3viq_B Mating-type switching p 27.7 87 0.003 20.9 4.2 24 120-143 5-28 (85)
77 1wlq_A Geminin; coiled-coil; 2 27.2 1E+02 0.0034 20.5 4.3 26 118-143 47-72 (83)
78 3gpv_A Transcriptional regulat 26.9 78 0.0027 22.6 4.2 32 117-148 103-134 (148)
79 3s9g_A Protein hexim1; cyclin 26.3 1.3E+02 0.0043 20.7 4.8 31 115-145 64-94 (104)
80 2aze_B Transcription factor E2 25.8 1.1E+02 0.0036 21.0 4.6 24 118-141 8-31 (106)
81 1hwt_C Protein (heme activator 25.6 26 0.00089 22.1 1.2 23 123-145 58-80 (81)
82 3he5_B Synzip2; heterodimeric 25.4 98 0.0033 18.0 3.6 18 121-138 29-46 (52)
83 3aei_A Prefoldin beta subunit 24.9 69 0.0024 21.2 3.2 25 120-144 72-96 (99)
84 2jee_A YIIU; FTSZ, septum, coi 24.6 1.5E+02 0.0053 19.4 5.0 27 117-143 21-47 (81)
85 1uii_A Geminin; human, DNA rep 23.1 1.3E+02 0.0045 19.9 4.4 23 123-145 46-68 (83)
86 1zxa_A CGMP-dependent protein 22.9 1.5E+02 0.0052 18.7 4.9 22 122-143 24-45 (67)
87 4emc_A Monopolin complex subun 22.7 91 0.0031 23.9 4.0 28 114-141 18-45 (190)
88 3trt_A Vimentin; cytoskeleton, 21.9 1.5E+02 0.0053 18.5 4.6 27 117-143 50-76 (77)
89 2wvr_A Geminin; DNA replicatio 21.9 1.4E+02 0.0047 23.2 4.9 27 118-144 124-150 (209)
90 3mq9_A Bone marrow stromal ant 21.5 1.1E+02 0.0037 25.7 4.7 25 118-142 445-469 (471)
91 3m9b_A Proteasome-associated A 21.1 1.1E+02 0.0036 24.5 4.2 24 120-143 72-95 (251)
92 1k1f_A Breakpoint cluster regi 21.0 1.7E+02 0.0058 18.6 4.4 27 117-143 27-53 (72)
93 3lay_A Zinc resistance-associa 21.0 1.5E+02 0.0053 22.1 5.0 29 110-138 107-135 (175)
94 2zxx_A Geminin; coiled-coil, c 20.6 1.4E+02 0.005 19.5 4.1 6 86-91 16-21 (79)
95 1rtm_1 Mannose-binding protein 20.6 1.1E+02 0.0039 21.0 4.0 23 122-144 3-25 (149)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=4.9e-41 Score=289.10 Aligned_cols=128 Identities=55% Similarity=0.753 Sum_probs=97.8
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|++++..||||||||||+||+|+|||||+|+||+|||
T Consensus 232 skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~is 311 (365)
T 2y65_A 232 GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCS 311 (365)
T ss_dssp EEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEEC
T ss_pred EEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEec
Confidence 78999999999999999999999999999999999999999999988668999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcccccccccCCchH-HHHHHHHHHHHHHH
Q psy11231 82 PASYNYEETISTLRYASRVKKICNKARVNQDPKD-ALLIKYQKEISELK 129 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~-~~i~~l~~ei~~Lk 129 (172)
|...+++||++||+||+||+.|+|.|.+|.++.. .++++|++|+++++
T Consensus 312 P~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 312 PASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp CBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC---------
T ss_pred CccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764 56666777766654
No 2
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.4e-40 Score=286.62 Aligned_cols=128 Identities=53% Similarity=0.792 Sum_probs=115.8
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|++++ .||||||||||+||+|+|||||+|+||+|||
T Consensus 227 skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~is 305 (369)
T 3cob_A 227 GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNIS 305 (369)
T ss_dssp EEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEEC
T ss_pred EEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeC
Confidence 799999999999999999999999999999999999999999999875 7999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 82 PASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKSYNYEETI 139 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~~ei~~Lk~~l~~~~~~i 139 (172)
|...+++||++||+||+|+++|+|.|.+|.++ +||.+|+.++..++++.
T Consensus 306 P~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~---------~ei~~L~~~l~~~~~~~ 354 (369)
T 3cob_A 306 PAESNLDETHNSLTYASRVRSIVNDPSKNVSS---------KEVARLKKLVSYWKEQA 354 (369)
T ss_dssp CBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC---------HHHHHHHHHTTCC----
T ss_pred CccccHHHHHHHHHHHHHHhhcccCCcccCCH---------HHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999987 35555555555555443
No 3
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=7.7e-41 Score=288.43 Aligned_cols=122 Identities=80% Similarity=1.133 Sum_probs=96.4
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
+|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|.+++..||||||||||+||+|+|||||+|+||+||
T Consensus 251 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~v 330 (372)
T 3b6u_A 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANV 330 (372)
T ss_dssp EEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEE
T ss_pred EEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEe
Confidence 37899999999999999999999999999999999999999999999877899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhcccccccccCCchHHHHHHHH
Q psy11231 81 GPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQ 122 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~ 122 (172)
+|...+++||++||+||+|+++|+|+|.+|+++.++++++|+
T Consensus 331 sP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~~~~~~ 372 (372)
T 3b6u_A 331 GPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372 (372)
T ss_dssp CCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC-----------
T ss_pred CCcccCHHHHHHHHHHHHHHhhccccceecCChHHHHHHhcC
Confidence 999999999999999999999999999999999888777664
No 4
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=1e-39 Score=279.50 Aligned_cols=114 Identities=73% Similarity=1.092 Sum_probs=95.6
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
+|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|.+++ .||||||||||+||+|+|||||+|+||+||
T Consensus 234 ~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~i 312 (350)
T 2vvg_A 234 VGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANI 312 (350)
T ss_dssp EEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEE
T ss_pred EEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEe
Confidence 3799999999999999999999999999999999999999999999976 899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhcccccccccCCchH
Q psy11231 81 GPASYNYEETISTLRYASRVKKICNKARVNQDPKD 115 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~ 115 (172)
||...+++||++||+||+|+++|+|+|.+|+++.+
T Consensus 313 sP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 313 SPASTNYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp CCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred CCccccHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 99999999999999999999999999999998764
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=282.62 Aligned_cols=120 Identities=44% Similarity=0.698 Sum_probs=86.3
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|.+++ .||||||||||+||+|+|||||+|+||+|||
T Consensus 247 skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iS 325 (388)
T 3bfn_A 247 GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIA 325 (388)
T ss_dssp EEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEEC
T ss_pred EEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEEC
Confidence 789999999999999999999999999999999999999999999875 7999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcccccccccCCchHHHHHHHH
Q psy11231 82 PASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQ 122 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~~~i~~l~ 122 (172)
|...+++||++||+||+|+++|+|+|.+|+++....+..++
T Consensus 326 P~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l~~~k 366 (388)
T 3bfn_A 326 PERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVK 366 (388)
T ss_dssp CSGGGHHHHHHHHHHHCSEEEEC------------------
T ss_pred CccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHHHHHH
Confidence 99999999999999999999999999999988765444333
No 6
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=4.6e-39 Score=276.36 Aligned_cols=109 Identities=61% Similarity=0.885 Sum_probs=89.2
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|.++. .||||||||||+||+|+||||++|+||+|||
T Consensus 250 skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~vs 328 (359)
T 1x88_A 250 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT-PHVPYRESKLTRILQDSLGGRTRTSIIATIS 328 (359)
T ss_dssp EEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGSSSSSEEEEEEEEC
T ss_pred EEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCC-CCCccccchHHHHHHHHhCCCCeEEEEEEEC
Confidence 799999999999999999999999999999999999999999999865 8999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcccccccccC
Q psy11231 82 PASYNYEETISTLRYASRVKKICNKARVNQ 111 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i~~~~~~n~ 111 (172)
|...+++||++||+||+|||+|+|+|.+|+
T Consensus 329 P~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 329 PASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp CCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred CCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 999999999999999999999999999986
No 7
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=5.7e-39 Score=275.43 Aligned_cols=114 Identities=63% Similarity=0.898 Sum_probs=110.6
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|.+++..||||||||||+||+|+||||++|+||+||+
T Consensus 229 skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~is 308 (355)
T 1goj_A 229 GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCS 308 (355)
T ss_dssp EEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEEC
T ss_pred eEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEEC
Confidence 78999999999999999999999999999999999999999999998778999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcccccccccCCchH
Q psy11231 82 PASYNYEETISTLRYASRVKKICNKARVNQDPKD 115 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~ 115 (172)
|...+++||++||+||+|+|+|+|+|.+|.++..
T Consensus 309 P~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~ 342 (355)
T 1goj_A 309 PSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSP 342 (355)
T ss_dssp CBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSC
T ss_pred cccccHHHHHHHHHHHHHHhhccCCceeCCCCCH
Confidence 9999999999999999999999999999998764
No 8
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-38 Score=274.95 Aligned_cols=111 Identities=58% Similarity=0.838 Sum_probs=89.0
Q ss_pred ccEEEEeCCCCCcccccCCc-hhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 2 GRLHLVDLAGSERQAKTGAS-GQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~-g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
|+|+|||||||||..++++. |.+++|+..||+||++||+||.+|.++. .||||||||||+||+|+|||||+|+||+||
T Consensus 260 skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~i 338 (373)
T 2wbe_C 260 GKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA-PHVPYRESKLTRLLQESLGGRTKTSIIATI 338 (373)
T ss_dssp EEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCS-SCCCGGGCHHHHHTHHHHHSSSEEEEEEEE
T ss_pred EEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-CcCccccchHHHHHHHHhCCCceEEEEEEe
Confidence 79999999999999999887 9999999999999999999999999865 899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhcccccccccCCc
Q psy11231 81 GPASYNYEETISTLRYASRVKKICNKARVNQDP 113 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~ 113 (172)
||...+++||++||+||+|+|+|+|+|.+|++.
T Consensus 339 sP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 339 SPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred CCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 999999999999999999999999999999864
No 9
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=271.65 Aligned_cols=114 Identities=53% Similarity=0.759 Sum_probs=99.5
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCC-CCCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGK-CTHIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~-~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
+|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|++++ ..||||||||||+||+|+|||||+|+||+|
T Consensus 227 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~ 306 (349)
T 1t5c_A 227 VSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICT 306 (349)
T ss_dssp EEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEE
T ss_pred EEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEE
Confidence 3789999999999999999999999999999999999999999999865 369999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhcccccccccCCchHH
Q psy11231 80 VGPASYNYEETISTLRYASRVKKICNKARVNQDPKDA 116 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~~~~~ 116 (172)
|+|. +++||++||+||+||++|+|+|.+|+++...
T Consensus 307 isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 307 ITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp ECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred eCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCCC
Confidence 9997 6999999999999999999999999987654
No 10
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2.8e-38 Score=272.05 Aligned_cols=111 Identities=58% Similarity=0.859 Sum_probs=88.5
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcC-----------CCCCCCCCCchhhhccccCCC
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG-----------KCTHIPYRNSKLTRILQDSLG 69 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~-----------~~~~ipyRdSkLT~lL~d~Lg 69 (172)
+|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|+++ +..||||||||||+||+|+||
T Consensus 241 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLg 320 (366)
T 2zfi_A 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLG 320 (366)
T ss_dssp EEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSS
T ss_pred EeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhC
Confidence 378999999999999999999999999999999999999999999863 347999999999999999999
Q ss_pred CCceeEeEeeeCCCCCChHHHHHHHHHHHHHhcccccccccC
Q psy11231 70 GNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111 (172)
Q Consensus 70 G~~~t~lI~~vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~ 111 (172)
|||+|+||+||+|...+++||++||+||+|||+|+++|.++.
T Consensus 321 Gnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 321 GNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp TTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 999999999999999999999999999999999999998875
No 11
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=4.6e-38 Score=276.44 Aligned_cols=113 Identities=59% Similarity=0.853 Sum_probs=88.1
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCC---------------------CCCCCCCchh
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC---------------------THIPYRNSKL 60 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~---------------------~~ipyRdSkL 60 (172)
|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|.+++. .|||||||||
T Consensus 293 skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkL 372 (443)
T 2owm_A 293 SRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVL 372 (443)
T ss_dssp EEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC-------------------------CCCGGGSHH
T ss_pred EEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHh
Confidence 7899999999999999999999999999999999999999999987432 3999999999
Q ss_pred hhccccCCCCCceeEeEeeeCCCCCChHHHHHHHHHHHHHhcccccccccC-CchHH
Q psy11231 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ-DPKDA 116 (172)
Q Consensus 61 T~lL~d~LgG~~~t~lI~~vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~-~~~~~ 116 (172)
|+||+|+|||||+|+||+||+|. +|+||++||+||+|||+|+|+|.+|+ ++...
T Consensus 373 TrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~~~~ 427 (443)
T 2owm_A 373 TWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGVSA 427 (443)
T ss_dssp HHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC-----
T ss_pred HHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCCccH
Confidence 99999999999999999999997 69999999999999999999999999 55443
No 12
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2.1e-37 Score=264.97 Aligned_cols=107 Identities=50% Similarity=0.701 Sum_probs=101.1
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCC--CCCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGK--CTHIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~--~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|.+++ ..||||||||||+||+|+|||||+|+||+|
T Consensus 238 skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~ 317 (347)
T 1f9v_A 238 GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVN 317 (347)
T ss_dssp EEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEE
T ss_pred eEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEE
Confidence 789999999999999999999999999999999999999999998764 479999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhccccccc
Q psy11231 80 VGPASYNYEETISTLRYASRVKKICNKAR 108 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k~i~~~~~ 108 (172)
|||...+++||++||+||+|++.|+..++
T Consensus 318 vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 318 ISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp ECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred eCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999988764
No 13
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-38 Score=269.02 Aligned_cols=102 Identities=52% Similarity=0.722 Sum_probs=79.8
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|++++..||||||||||+||+|+|||||+|+||+||+
T Consensus 258 skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~is 337 (359)
T 3nwn_A 258 SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIY 337 (359)
T ss_dssp EEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEEC
T ss_pred ccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeC
Confidence 79999999999999999999999999999999999999999999987778999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcc
Q psy11231 82 PASYNYEETISTLRYASRVKKI 103 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i 103 (172)
|...+|+||++||+||+|||+|
T Consensus 338 P~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 338 GEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp CSGGGHHHHHHHHHHHTTGGGC
T ss_pred CchhhHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999986
No 14
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=3.9e-37 Score=264.45 Aligned_cols=111 Identities=41% Similarity=0.615 Sum_probs=95.7
Q ss_pred CccEEEEeCCCCCcccccCCch-hhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASG-QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g-~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
+|+|+|||||||||..++++.| .+++|+..||+||++||+||.+|.+++ .||||||||||+||+|+|||||+|+||+|
T Consensus 229 ~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~ 307 (360)
T 1ry6_A 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKSIMIAN 307 (360)
T ss_dssp EEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEEEEEEE
T ss_pred eeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCC-CCCccccCHHHHHHHHHhCCCCeEEEEEE
Confidence 3799999999999999988765 568899999999999999999998764 89999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhcccccccccCC
Q psy11231 80 VGPASYNYEETISTLRYASRVKKICNKARVNQD 112 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~~ 112 (172)
|||...+++||++||+||+|+|.|+|.|..+..
T Consensus 308 isP~~~~~~ETlsTLrfA~rak~i~n~~~~~~~ 340 (360)
T 1ry6_A 308 ISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKP 340 (360)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHCC----------
T ss_pred eCCCcccHHHHHHHHHHHHHHhhcccCcccCCC
Confidence 999999999999999999999999997665543
No 15
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=5.4e-37 Score=262.60 Aligned_cols=106 Identities=48% Similarity=0.677 Sum_probs=93.8
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCC--CCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC--THIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~--~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|.+++. .||||||||||+||+|+|||||+|+||+|
T Consensus 241 ~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~ 320 (349)
T 3t0q_A 241 GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVN 320 (349)
T ss_dssp EEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEE
T ss_pred EEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEE
Confidence 7899999999999999999999999999999999999999999987543 59999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhcccccc
Q psy11231 80 VGPASYNYEETISTLRYASRVKKICNKA 107 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k~i~~~~ 107 (172)
|+|...+++||++||+||+|++.|+..+
T Consensus 321 vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 321 IPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred eCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999998654
No 16
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.3e-37 Score=263.78 Aligned_cols=103 Identities=57% Similarity=0.901 Sum_probs=76.8
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCC--CCCCCCCCchhhhccccCCCCCceeEeEe
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGK--CTHIPYRNSKLTRILQDSLGGNSKTVMCA 78 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~--~~~ipyRdSkLT~lL~d~LgG~~~t~lI~ 78 (172)
+|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++ ..||||||||||+||+|+|||||+|+||+
T Consensus 251 ~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt~mIa 330 (355)
T 3lre_A 251 IAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIA 330 (355)
T ss_dssp CEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEEEEEE
T ss_pred EEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceEEEEE
Confidence 4899999999999999999999999999999999999999999998753 36999999999999999999999999999
Q ss_pred eeCCCCCChHHHHHHHHHHHHHhcc
Q psy11231 79 TVGPASYNYEETISTLRYASRVKKI 103 (172)
Q Consensus 79 ~vsp~~~~~~eTl~TL~fa~r~k~i 103 (172)
||||...+|+||++||+||+|||+|
T Consensus 331 ~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 331 AVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EECCBGGGHHHHHHHHHHHHHTC--
T ss_pred EeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999986
No 17
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=264.64 Aligned_cols=107 Identities=50% Similarity=0.714 Sum_probs=98.6
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCC--CCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC--THIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~--~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|++++. .||||||||||+||+|+|||||+|+||+|
T Consensus 294 ~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~ 373 (403)
T 4etp_A 294 GTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVN 373 (403)
T ss_dssp EEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEE
T ss_pred EEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEE
Confidence 7899999999999999999999999999999999999999999987542 59999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhccccccc
Q psy11231 80 VGPASYNYEETISTLRYASRVKKICNKAR 108 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k~i~~~~~ 108 (172)
|||...+++||++||+||+|++.++..|+
T Consensus 374 vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 374 ISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp ECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred eCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999988764
No 18
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=3e-37 Score=264.93 Aligned_cols=102 Identities=52% Similarity=0.722 Sum_probs=79.6
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++++..||||||||||+||+|+|||||+|+||+||+
T Consensus 257 skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mIa~is 336 (358)
T 2nr8_A 257 SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIY 336 (358)
T ss_dssp EEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEEC
T ss_pred EEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeC
Confidence 78999999999999999999999999999999999999999999987768999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcc
Q psy11231 82 PASYNYEETISTLRYASRVKKI 103 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i 103 (172)
|...+|+||++||+||+|+|.|
T Consensus 337 P~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 337 GEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp CSGGGHHHHHHHHHHHTTGGGC
T ss_pred CchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999986
No 19
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=8.8e-37 Score=259.60 Aligned_cols=103 Identities=55% Similarity=0.833 Sum_probs=91.4
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
.|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|.+++ .||||||||||+||+|+|||||+|+||+||
T Consensus 227 ~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lL~dsLgGns~t~mI~~i 305 (330)
T 2h58_A 227 TGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-GHVPFRNSKLTYLLQDSLSGDSKTLMVVQV 305 (330)
T ss_dssp EEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTHHHHSTTCEEEEEEEE
T ss_pred EEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCC-CCCcccccHHHHHHHHHhCCCceEEEEEEe
Confidence 3799999999999999999999999999999999999999999999865 899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhccc
Q psy11231 81 GPASYNYEETISTLRYASRVKKIC 104 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i~ 104 (172)
||...+++||++||+||+|+|+|+
T Consensus 306 sP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 306 SPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp CCBGGGHHHHHHHHHHHHHHC---
T ss_pred CCccccHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999986
No 20
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.2e-37 Score=260.52 Aligned_cols=101 Identities=61% Similarity=0.873 Sum_probs=98.4
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|.+++ .||||||||||+||+|+|||||+|+||+|||
T Consensus 225 skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGns~t~mia~vs 303 (325)
T 1bg2_A 225 GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCS 303 (325)
T ss_dssp EEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHGGGTSSSSCEEEEEEEEC
T ss_pred EEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCC-CCCcccccHHHHHHHHHhCCCCcEEEEEEEC
Confidence 799999999999999999999999999999999999999999999875 8999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhcc
Q psy11231 82 PASYNYEETISTLRYASRVKKI 103 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i 103 (172)
|...+++||++||+||+|||+|
T Consensus 304 P~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 304 PSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp CBGGGHHHHHHHHHHHHTSCCC
T ss_pred CccccHHHHHHHHHHHHHhccC
Confidence 9999999999999999999986
No 21
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.2e-36 Score=259.93 Aligned_cols=106 Identities=38% Similarity=0.575 Sum_probs=88.8
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeC
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVG 81 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vs 81 (172)
|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++ .||||||||||+||+|+|||||+|+||+|||
T Consensus 235 skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~mIa~is 313 (344)
T 3dc4_A 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACIS 313 (344)
T ss_dssp EEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEEEEEEEC
T ss_pred EEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEEEEEEeC
Confidence 799999999999999999999999999999999999999999999875 7999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhccccccc
Q psy11231 82 PASYNYEETISTLRYASRVKKICNKAR 108 (172)
Q Consensus 82 p~~~~~~eTl~TL~fa~r~k~i~~~~~ 108 (172)
|...+++||++||+||+|++.....|.
T Consensus 314 P~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 314 PHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred CchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999876653
No 22
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1.8e-36 Score=259.85 Aligned_cols=102 Identities=68% Similarity=0.951 Sum_probs=90.2
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhc-----CCCCCCCCCCchhhhccccCCCCCceeE
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPYRNSKLTRILQDSLGGNSKTV 75 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~-----~~~~~ipyRdSkLT~lL~d~LgG~~~t~ 75 (172)
+|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|++ ++..||||||||||+||+|+|||||+|+
T Consensus 243 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 322 (354)
T 3gbj_A 243 VGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTA 322 (354)
T ss_dssp EEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEE
T ss_pred EEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEE
Confidence 37999999999999999999999999999999999999999999986 2457999999999999999999999999
Q ss_pred eEeeeCCCCCChHHHHHHHHHHHHHhc
Q psy11231 76 MCATVGPASYNYEETISTLRYASRVKK 102 (172)
Q Consensus 76 lI~~vsp~~~~~~eTl~TL~fa~r~k~ 102 (172)
||+||||...+|+||++||+||.+|+.
T Consensus 323 mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 323 MVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999985
No 23
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=259.59 Aligned_cols=101 Identities=51% Similarity=0.744 Sum_probs=76.9
Q ss_pred ccEEEEeCCCCCcccccCCch----hhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeE
Q psy11231 2 GRLHLVDLAGSERQAKTGASG----QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMC 77 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g----~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI 77 (172)
|+|+|||||||||..++++.| .+++|+..||+||++||+||.+|++++ .||||||||||+||+|+|||||+|+||
T Consensus 272 skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLT~LLqdsLgGnskT~mI 350 (376)
T 2rep_A 272 APLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-SHVPYRNSKLTYLLQNSLGGSAKMLMF 350 (376)
T ss_dssp EEEEEEECCCCC------------------------CHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGTSTTCEEEEE
T ss_pred eEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCC-CccCCcCCHHHHHHHHhhCCCCeEEEE
Confidence 789999999999999999988 999999999999999999999999865 899999999999999999999999999
Q ss_pred eeeCCCCCChHHHHHHHHHHHHHhcc
Q psy11231 78 ATVGPASYNYEETISTLRYASRVKKI 103 (172)
Q Consensus 78 ~~vsp~~~~~~eTl~TL~fa~r~k~i 103 (172)
+||+|...+|+||++||+||+|++++
T Consensus 351 a~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 351 VNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred EEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999864
No 24
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=2.7e-36 Score=257.82 Aligned_cols=100 Identities=63% Similarity=0.942 Sum_probs=82.4
Q ss_pred ccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcC--CCCCCCCCCchhhhccccCCCCCceeEeEee
Q psy11231 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNSKLTRILQDSLGGNSKTVMCAT 79 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~--~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~ 79 (172)
|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+++ +..||||||||||+||+|+|||||+|+||+|
T Consensus 243 skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~ 322 (344)
T 4a14_A 243 SKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIAC 322 (344)
T ss_dssp EEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEE
T ss_pred eeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEE
Confidence 79999999999999999999999999999999999999999999874 3469999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHh
Q psy11231 80 VGPASYNYEETISTLRYASRVK 101 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k 101 (172)
|+|...+|+||++||+||+|||
T Consensus 323 vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 323 VSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp ECCBGGGHHHHHHHHHHHHHTC
T ss_pred eCCCccchhHHhhhhhhhhhcC
Confidence 9999999999999999999986
No 25
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.3e-35 Score=273.21 Aligned_cols=104 Identities=51% Similarity=0.769 Sum_probs=90.5
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
+|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+||+||
T Consensus 609 ~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~i 688 (715)
T 4h1g_A 609 YGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNI 688 (715)
T ss_dssp EEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEE
T ss_pred EEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEEE
Confidence 37999999999999999999999999999999999999999999998777899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhccc
Q psy11231 81 GPASYNYEETISTLRYASRVKKIC 104 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i~ 104 (172)
||...+++||++||+||+|+|+|+
T Consensus 689 sp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 689 SPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp CCBGGGHHHHHHHHHHHHHHCC--
T ss_pred CCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999996
No 26
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=100.00 E-value=3.4e-35 Score=216.29 Aligned_cols=113 Identities=44% Similarity=0.591 Sum_probs=102.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeCCCCCChHHHHHHHHHHHHHhcccccccccC
Q psy11231 32 NLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111 (172)
Q Consensus 32 N~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vsp~~~~~~eTl~TL~fa~r~k~i~~~~~~n~ 111 (172)
|+||++||+||.+|++++..||||||||||++|+|+|||+|+|+||+||+|...+++||++||+||+|++.|++.|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 79999999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 112 DPKD-ALLIK---YQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 112 ~~~~-~~i~~---l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
++.. .++++ ..++++.|+.++..+++++++||+
T Consensus 81 ~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8764 33343 445666788899999999999984
No 27
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=3.8e-35 Score=253.97 Aligned_cols=105 Identities=49% Similarity=0.691 Sum_probs=83.5
Q ss_pred ccEEEEeCCCCCcccccC-CchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccC-CCCCceeEeEee
Q psy11231 2 GRLHLVDLAGSERQAKTG-ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS-LGGNSKTVMCAT 79 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~-~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~-LgG~~~t~lI~~ 79 (172)
|+|+|||||||||..+++ ..+.+++|+..||+||++||+||.+|.+++ .||||||||||+||+|+ |||||+|+||+|
T Consensus 280 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hvPYRdSKLTrlLqdsllGgnskT~mIa~ 358 (387)
T 2heh_A 280 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAT 358 (387)
T ss_dssp EEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGGSSTTEEEEEEEE
T ss_pred eEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCC-CCCCccccHHHHHHhhhccCCCCeEEEEEE
Confidence 799999999999988776 456788899999999999999999999864 89999999999999999 699999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhcccccc
Q psy11231 80 VGPASYNYEETISTLRYASRVKKICNKA 107 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k~i~~~~ 107 (172)
|+|...+++||++||+||+|+|+|++..
T Consensus 359 isP~~~~~~ETlsTLrfA~rak~I~~~~ 386 (387)
T 2heh_A 359 ISPGISSCEYTLNTLRYADRVKELSPHS 386 (387)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHCC-----
T ss_pred eCCccchHHHHHHHHHHHHHhccCcCCC
Confidence 9999999999999999999999998753
No 28
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=100.00 E-value=2.2e-35 Score=211.43 Aligned_cols=97 Identities=51% Similarity=0.698 Sum_probs=90.3
Q ss_pred HhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeeeCCCCCChHHHHHHHHHHHHHhccccccc
Q psy11231 29 SKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 108 (172)
Q Consensus 29 ~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~vsp~~~~~~eTl~TL~fa~r~k~i~~~~~ 108 (172)
++||+||++||+||.+|.+++..||||||||||++|+|+|||+|+|+||+||+|...+++||++||+||+|++.|++.|.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 57999999999999999988668999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchH-HHHHHHHHHH
Q psy11231 109 VNQDPKD-ALLIKYQKEI 125 (172)
Q Consensus 109 ~n~~~~~-~~i~~l~~ei 125 (172)
+|.+... .++++|++|+
T Consensus 82 ~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 82 VNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CEEECCHHHHHHHHHHHH
T ss_pred eccCCCHHHHHHHHHHhh
Confidence 9997664 5666777775
No 29
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=5.5e-35 Score=254.50 Aligned_cols=106 Identities=47% Similarity=0.677 Sum_probs=83.1
Q ss_pred ccEEEEeCCCCCcccccC-CchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccC-CCCCceeEeEee
Q psy11231 2 GRLHLVDLAGSERQAKTG-ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDS-LGGNSKTVMCAT 79 (172)
Q Consensus 2 srL~~VDLAGsEr~~~~~-~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~-LgG~~~t~lI~~ 79 (172)
|+|+|||||||||..+++ ..+.++.|+..||+||++||+||.+|.+++ .||||||||||+||+|+ |||||+|+||+|
T Consensus 300 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hIPYRdSKLTrLLqdsllGgnskT~mIa~ 378 (410)
T 1v8k_A 300 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAM 378 (410)
T ss_dssp EEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEE
T ss_pred eEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCC-CCCCcccchhHHHHhhcccCCCceEEEEEE
Confidence 799999999999988776 456788899999999999999999998764 89999999999999999 599999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHhccccccc
Q psy11231 80 VGPASYNYEETISTLRYASRVKKICNKAR 108 (172)
Q Consensus 80 vsp~~~~~~eTl~TL~fa~r~k~i~~~~~ 108 (172)
|||...+++||++||+||+|++.|..+|.
T Consensus 379 iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 379 ISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred eCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999987663
No 30
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.6e-34 Score=252.02 Aligned_cols=102 Identities=48% Similarity=0.706 Sum_probs=86.6
Q ss_pred CccEEEEeCCCCCcccccCCchhhHHHHHhhhhhHHHHHHHHHHHhcCCCCCCCCCCchhhhccccCCCCCceeEeEeee
Q psy11231 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80 (172)
Q Consensus 1 vsrL~~VDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~~L~~~~~~~ipyRdSkLT~lL~d~LgG~~~t~lI~~v 80 (172)
+|+|+|||||||||.. .+.+++|+..||+||++||+||.+|++++ .||||||||||+||+|+|||||+|+||+||
T Consensus 285 ~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~LLqdsLgGnskt~mI~~v 359 (412)
T 3u06_A 285 VGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSLGGNSKTLMFINV 359 (412)
T ss_dssp EEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHHGGGTSTTCEEEEEEEE
T ss_pred EEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccC-CCCCccccHHHHHHHHhcCCCceEEEEEEe
Confidence 3789999999999874 35799999999999999999999999864 899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHhcccccc
Q psy11231 81 GPASYNYEETISTLRYASRVKKICNKA 107 (172)
Q Consensus 81 sp~~~~~~eTl~TL~fa~r~k~i~~~~ 107 (172)
||...+|+||++||+||+|++.|+..+
T Consensus 360 sP~~~~~~ETl~TLrfA~rv~~i~~~~ 386 (412)
T 3u06_A 360 SPFQDCFQESVKSLRFAASVNSCKMTK 386 (412)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHHHCC--
T ss_pred CCChhhHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999998543
No 31
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=79.96 E-value=4.3 Score=28.97 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETISTLRYASRV 148 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~ 148 (172)
..+++|+.||..|+.+|....++++++|.++..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 468899999999999999999999999988863
No 32
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=75.83 E-value=4.6 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 119 IKYQKEISELKKKSYNYEETISTL 142 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i~~~ 142 (172)
-+|..|+.+|+-+.+.++.++..+
T Consensus 3 yqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHHHHHhcc
Confidence 357788888888888888887765
No 33
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=73.73 E-value=8.3 Score=21.66 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
.+.+|+..+++|..+...++.++.+++.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3677888888888888888888888874
No 34
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=73.72 E-value=8.4 Score=20.64 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
+..|+.||..|+.++..++=+|..++-
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455677777777777777776665553
No 35
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=68.06 E-value=13 Score=20.46 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
|.+|+..+++|-.+...++.++.+++.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567788888888888888888887763
No 36
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=67.91 E-value=7.7 Score=20.05 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTL 142 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~ 142 (172)
+++|....++|+.++..++-+|..+
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 4566777788888888888776543
No 37
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=64.91 E-value=10 Score=20.94 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
|.+|+..+.+|-.+...++.++.+++
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677777777777777777777776
No 38
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=60.08 E-value=8.9 Score=26.66 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
.+++|+.++..++.++..++++++.++.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999998873
No 39
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=59.19 E-value=16 Score=20.50 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
+.+|+.++..|-.+...++.++.+++.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456777777777777777777777764
No 40
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=59.11 E-value=16 Score=20.22 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
|.+|+..++.|-.+...++.++.+++.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567777788888888888888877763
No 41
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.98 E-value=23 Score=22.99 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
++..+..|+.|..+|...+++|..++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555554
No 42
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=57.62 E-value=22 Score=19.62 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
|.+|+..+.+|-.+...++.++.+++.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 567777777877777778888877763
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.14 E-value=16 Score=23.74 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 114 KDALLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 114 ~~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
.+..|+.+++++.+..+++..++.++..+++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667888999999999999999888887764
No 44
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=56.08 E-value=23 Score=19.42 Aligned_cols=26 Identities=15% Similarity=0.433 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
+.+|+..+++|-.+...++.++.+++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45677777777777777777777766
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.93 E-value=24 Score=21.36 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
.-+..|+.|+.+|+.++..+.++++.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777776654
No 46
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=51.10 E-value=42 Score=20.95 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRYAS 146 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~ 146 (172)
++.+++|.+-...|.+|++.++..+..+++.+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 45667777777777777777777777776554
No 47
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.48 E-value=13 Score=24.96 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
......|+.|...|+.++..++.++..+++
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888888887773
No 48
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=49.04 E-value=30 Score=19.12 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
+.+|+..+++|-.+...++.++.+++.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456777777777777777777777764
No 49
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=48.76 E-value=33 Score=18.95 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
+.+|+..+..|-.+...++.++.+++
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45667777777777777777777766
No 50
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=48.35 E-value=42 Score=20.14 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
+..+.+|+++|.+|.+++...++....++
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKek~~~i~ 39 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKLKYKAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45678899999999998887776665554
No 51
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=46.69 E-value=46 Score=20.61 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
....|..+...|+.++..++.++..|+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444
No 52
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=45.92 E-value=44 Score=20.77 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
..+..|+.++..|+.+...+..++..|+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777778777777777777776
No 53
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=45.50 E-value=35 Score=18.92 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 119 IKYQKEISELKKKSYNYEETIST 141 (172)
Q Consensus 119 ~~l~~ei~~Lk~~l~~~~~~i~~ 141 (172)
...+++|.+||.+...+++++..
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHHh
Confidence 34567788888888888887754
No 54
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.33 E-value=50 Score=20.11 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
....|..+...|+.++..+.+++..|+
T Consensus 30 ~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 30 KAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666655554
No 55
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=45.20 E-value=38 Score=18.70 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
+++++..+++|-.+...++.++.+++.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567777777777777777777777763
No 56
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=45.04 E-value=37 Score=18.74 Aligned_cols=26 Identities=8% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
|.+|+..+..|-.+-..++.++.+++
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 45667777777777777777777665
No 57
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.37 E-value=18 Score=23.83 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
......|+.|...|+.++..+..++..+++
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888888888888887763
No 58
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=41.42 E-value=57 Score=19.67 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHhh
Q psy11231 121 YQKEISELKKKSYNYEETISTLRYASRVKKI 151 (172)
Q Consensus 121 l~~ei~~Lk~~l~~~~~~i~~~r~~~~~~~~ 151 (172)
|+.+|..|++.+..-.+.+..+.+|-+.-.+
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~ 32 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTS 32 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999888765443
No 59
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=40.61 E-value=59 Score=19.59 Aligned_cols=28 Identities=11% Similarity=0.273 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
..+..|+.++..|..+...+..+++.++
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777665
No 60
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=39.92 E-value=64 Score=19.82 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
...|..+...|+.++..+.+++..|+
T Consensus 32 v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 32 TDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544
No 61
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.77 E-value=54 Score=18.94 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRYAS 146 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~ 146 (172)
.+..|+.+.++|......+++.++.+++.+
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345566677777777777777777666544
No 62
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.10 E-value=61 Score=21.54 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11231 120 KYQKEISELKKKSYNYEETIST 141 (172)
Q Consensus 120 ~l~~ei~~Lk~~l~~~~~~i~~ 141 (172)
.++.||..||.++..+.+.++.
T Consensus 57 ~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 57 QKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 63
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.98 E-value=25 Score=22.97 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
+..+.+.+++|..|+.+++.+.+.+..+..
T Consensus 34 n~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 34 SEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344556667777777777777766666553
No 64
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=38.18 E-value=59 Score=22.97 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 112 DPKDALLIKYQKEISELKKKSYNYE 136 (172)
Q Consensus 112 ~~~~~~i~~l~~ei~~Lk~~l~~~~ 136 (172)
++.+.+|..|..+|..|+.++..+.
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMK 35 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666555555444
No 65
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=37.80 E-value=54 Score=18.32 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy11231 124 EISELKKKSYNYEETISTLRYAS 146 (172)
Q Consensus 124 ei~~Lk~~l~~~~~~i~~~r~~~ 146 (172)
|..+|..++...+++|.+++..+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN 30 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKEN 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666544
No 66
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=36.27 E-value=69 Score=20.73 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
..|+.|+.++..|+.+...++..++..+
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677888888888888888887777544
No 67
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=34.02 E-value=98 Score=22.25 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 113 PKDALLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 113 ~~~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
.....+.+|..++++++.++..+..++....
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888888877654
No 68
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=34.00 E-value=40 Score=22.01 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy11231 126 SELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 126 ~~Lk~~l~~~~~~i~~~r~~ 145 (172)
+-||+++..+.+.++++...
T Consensus 18 evLKe~I~EL~e~~~qLE~E 37 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERE 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 69
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=31.25 E-value=93 Score=21.20 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETIST 141 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~ 141 (172)
.....|+.||++|..++..++...+.
T Consensus 47 ~t~~eL~~EI~~L~~eI~~LE~iqs~ 72 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQLEKMQNN 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888777777755543
No 70
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.22 E-value=87 Score=20.07 Aligned_cols=25 Identities=0% Similarity=-0.015 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETIST 141 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~ 141 (172)
.|+.|+.++..|+.++..+..+...
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~ 72 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 71
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=30.72 E-value=58 Score=16.55 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11231 121 YQKEISELKKKSYNYEET 138 (172)
Q Consensus 121 l~~ei~~Lk~~l~~~~~~ 138 (172)
+-+|+++|++.++.+...
T Consensus 6 lykeledlqerlrklrkk 23 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666655543
No 72
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.04 E-value=99 Score=19.02 Aligned_cols=29 Identities=24% Similarity=0.165 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
....++.++..|+.+...+..+++.++..
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788888888888888777654
No 73
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.27 E-value=1e+02 Score=18.70 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
+..|+.++..|..+...+..+++.++
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 74
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=27.99 E-value=62 Score=19.58 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETI 139 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i 139 (172)
...+..|+.++..|+.++..++..+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777766665543
No 75
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=27.81 E-value=1.3e+02 Score=19.74 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy11231 116 ALLIKYQKEISELKKKSYNYEETISTLRYAS 146 (172)
Q Consensus 116 ~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~ 146 (172)
..+..++.||..|+-++....-+++.+...-
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888888776533
No 76
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.66 E-value=87 Score=20.85 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 120 KYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 120 ~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
.++.+|+.|+.+...++.++..++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665554
No 77
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=27.17 E-value=1e+02 Score=20.49 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
+..++.||..|+.++..+.+..+..+
T Consensus 47 ie~~~eEi~~Lk~en~~L~elA~~~q 72 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDLAEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556655555555555443
No 78
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.85 E-value=78 Score=22.64 Aligned_cols=32 Identities=9% Similarity=0.019 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLRYASRV 148 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~~~~ 148 (172)
.+..++++|++|+..+..++..+..++..-..
T Consensus 103 ~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44456666666666666666666666554333
No 79
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=26.34 E-value=1.3e+02 Score=20.73 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 115 DALLIKYQKEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 115 ~~~i~~l~~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
...++.|+.++.+|+.+...+..+-+.|+-.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4567777777777777777777777776654
No 80
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.77 E-value=1.1e+02 Score=21.03 Aligned_cols=24 Identities=8% Similarity=0.270 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETIST 141 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~ 141 (172)
+..|++|+..|..+-..+++.+..
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~ 31 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNI 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655553
No 81
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=25.60 E-value=26 Score=22.11 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 123 KEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 123 ~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
.++..|++.+..++..+..++++
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~~~ 80 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVHSS 80 (81)
T ss_dssp HHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 56778888888888888777655
No 82
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=25.43 E-value=98 Score=18.01 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11231 121 YQKEISELKKKSYNYEET 138 (172)
Q Consensus 121 l~~ei~~Lk~~l~~~~~~ 138 (172)
|++-|+.|++++..++.+
T Consensus 29 lekiianlrdeiarlene 46 (52)
T 3he5_B 29 LEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555444
No 83
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=24.86 E-value=69 Score=21.20 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 120 KYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 120 ~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
-|.+||..|+..-..+-++++++++
T Consensus 72 ~ykreie~l~~~ekeime~ls~l~~ 96 (99)
T 3aei_A 72 VYKREIEKLKKREKEIMEELSKLRA 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4788999999888888888887763
No 84
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.62 E-value=1.5e+02 Score=19.44 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
.|..|+-||..||.+...+.++.+.++
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~ 47 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQ 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666655555444433
No 85
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.10 E-value=1.3e+02 Score=19.89 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy11231 123 KEISELKKKSYNYEETISTLRYA 145 (172)
Q Consensus 123 ~ei~~Lk~~l~~~~~~i~~~r~~ 145 (172)
.|+.+|..++..+++++..++..
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~e 68 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKE 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 86
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.88 E-value=1.5e+02 Score=18.74 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11231 122 QKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 122 ~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
...|.+|+.++...+++|..+|
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr 45 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELK 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 87
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.73 E-value=91 Score=23.89 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 114 KDALLIKYQKEISELKKKSYNYEETIST 141 (172)
Q Consensus 114 ~~~~i~~l~~ei~~Lk~~l~~~~~~i~~ 141 (172)
++.++..|..|+..|..++...+.+++.
T Consensus 18 ad~LV~~L~~En~~L~~ql~~k~~ei~~ 45 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLDTKATEIKQ 45 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444444443
No 88
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.90 E-value=1.5e+02 Score=18.46 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
.+...+.||.+|+..+..++-++..++
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566677777777777777766554
No 89
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.88 E-value=1.4e+02 Score=23.15 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
+..++.||..|+.++..+++.++.+++
T Consensus 124 ie~l~eEi~~LkeEn~eLkeLae~~q~ 150 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELAEVAEHVQY 150 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666655555543
No 90
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.50 E-value=1.1e+02 Score=25.68 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 118 LIKYQKEISELKKKSYNYEETISTL 142 (172)
Q Consensus 118 i~~l~~ei~~Lk~~l~~~~~~i~~~ 142 (172)
+++++.||..|..+|..++.+++++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555444
No 91
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.08 E-value=1.1e+02 Score=24.55 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 120 KYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 120 ~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
.|..+++.++.|+..+++++++++
T Consensus 72 ~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 72 KLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777777777777777764
No 92
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=21.00 E-value=1.7e+02 Score=18.61 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 117 LLIKYQKEISELKKKSYNYEETISTLR 143 (172)
Q Consensus 117 ~i~~l~~ei~~Lk~~l~~~~~~i~~~r 143 (172)
.+...+.|+..++.-++.+++++++-|
T Consensus 27 ~vgdiEqeLe~Ck~sIrrLE~evn~Er 53 (72)
T 1k1f_A 27 SVGDIEQELERAKASIRRLEQEVNQER 53 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345667788889999999999888655
No 93
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.99 E-value=1.5e+02 Score=22.09 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=22.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 110 NQDPKDALLIKYQKEISELKKKSYNYEET 138 (172)
Q Consensus 110 n~~~~~~~i~~l~~ei~~Lk~~l~~~~~~ 138 (172)
.+.++.+.++.+.+||.+|+.++....-+
T Consensus 107 a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 107 ASSPDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999887775543
No 94
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.62 E-value=1.4e+02 Score=19.49 Aligned_cols=6 Identities=17% Similarity=0.468 Sum_probs=3.0
Q ss_pred ChHHHH
Q psy11231 86 NYEETI 91 (172)
Q Consensus 86 ~~~eTl 91 (172)
+|.+.+
T Consensus 16 ~YWk~l 21 (79)
T 2zxx_A 16 QYWKEV 21 (79)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 455544
No 95
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=20.57 E-value=1.1e+02 Score=21.03 Aligned_cols=23 Identities=0% Similarity=0.121 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11231 122 QKEISELKKKSYNYEETISTLRY 144 (172)
Q Consensus 122 ~~ei~~Lk~~l~~~~~~i~~~r~ 144 (172)
++++..|+.++..++..+..++.
T Consensus 3 ~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555554444
Done!