RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11231
(172 letters)
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 263 bits (675), Expect = 4e-89
Identities = 70/131 (53%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
G+L+LVDLAGSE+ +KTGA G L EA IN SLS LGNVISAL DG THIPYR+SKL
Sbjct: 231 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKL 290
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDP-KDALLI 119
TRILQ+SLGGN++T + PAS+N ET STL + R K + N VN++ +
Sbjct: 291 TRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKR 350
Query: 120 KYQKEISELKK 130
+Y+KE + +
Sbjct: 351 RYEKEKEKNAR 361
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 262 bits (673), Expect = 7e-89
Identities = 75/131 (57%), Positives = 96/131 (73%), Gaps = 3/131 (2%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
G+L LVDLAGSE+ KTGASGQ L+EA KIN SLS LG VI+AL DGK +H+PYR+SKL
Sbjct: 228 SGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKL 287
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIK 120
TRILQ+SLGGNS+T + P+SYN ET+STLR+ R K I NKA+VN + A L
Sbjct: 288 TRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL-- 345
Query: 121 YQKEISELKKK 131
++ +++ K +
Sbjct: 346 -KQMLAKAKTQ 355
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 262 bits (672), Expect = 1e-88
Identities = 97/122 (79%), Positives = 111/122 (90%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSERQAKTGA G+RLKEA+KINLSLS LGNVISALVDGK THIPYR+SKL
Sbjct: 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKL 310
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIK 120
TR+LQDSLGGN+KTVM A VGPASYN EET++TLRYA+R K I NK RVN+DPKDALL +
Sbjct: 311 TRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLRE 370
Query: 121 YQ 122
+Q
Sbjct: 371 FQ 372
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 259 bits (664), Expect = 3e-87
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
G+L+L+DLAGSE +TG G RLKE+ IN SL LG V+ AL G +PYR+SKL
Sbjct: 246 EGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKL 304
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIK 120
TR+LQDSLGG++ +++ A + P Y +T+S L +A+R K++ N+ N+ + L
Sbjct: 305 TRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGP 364
Query: 121 YQKEISELKK 130
+ EL
Sbjct: 365 VKLSQKELLG 374
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 251 bits (643), Expect = 2e-84
Identities = 84/118 (71%), Positives = 102/118 (86%), Gaps = 1/118 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSERQ+KTGA+G+ L E +KINLSLS LG VIS LV+G THIPYR+SKL
Sbjct: 234 VGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKL 292
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALL 118
TR+LQDSLGGNSKT+MCA + PAS NY+ET+STLRYA R K+I NK R+N+DPKDA +
Sbjct: 293 TRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 249 bits (639), Expect = 8e-84
Identities = 61/125 (48%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKC-THIPYRNSK 59
+ L+LVDLAGSER A+TGA+G RLKE IN SL LG VI L DG+ I YR+SK
Sbjct: 227 VSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSK 286
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLI 119
LTRILQ+SLGGN+KT + T+ P +++ET++ L++AS K + N VN+ D L
Sbjct: 287 LTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEH 344
Query: 120 KYQKE 124
+
Sbjct: 345 HHHHH 349
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 246 bits (630), Expect = 3e-82
Identities = 67/145 (46%), Positives = 93/145 (64%), Gaps = 5/145 (3%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
G+L VDLAGSER K+G++G +LKEA IN SLS LG+VISAL G HIPYRN KL
Sbjct: 226 RGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKL 284
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIK 120
T ++ DSLGGN+KT+M + PA N +ET ++L YASRV+ I N N K+ + +
Sbjct: 285 TMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE--VAR 342
Query: 121 YQKEISELKKK--SYNYEETISTLR 143
+K +S K++ +E + ++
Sbjct: 343 LKKLVSYWKEQAGRKGDDEELEEIQ 367
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 245 bits (629), Expect = 5e-82
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 11/126 (8%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----------GK 49
+ ++ LVDLAGSER TGA G RLKE + IN SL+TLG VISAL + K
Sbjct: 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 50 CTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARV 109
IPYR+S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K+I N V
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360
Query: 110 NQDPKD 115
N
Sbjct: 361 NHHHHH 366
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 242 bits (620), Expect = 5e-81
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
R+++VDLAGSE +TG G +E INL L ++ V+ ++ G T IPYR+S L
Sbjct: 234 HSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVL 292
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQD 112
T +LQ SL S A + P + ET+STLR+ + K + +
Sbjct: 293 TTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHHHHHH 344
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 241 bits (617), Expect = 2e-80
Identities = 67/111 (60%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKL
Sbjct: 249 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKL 307
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
TRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK VNQ
Sbjct: 308 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 237 bits (607), Expect = 1e-78
Identities = 64/113 (56%), Positives = 80/113 (70%), Gaps = 2/113 (1%)
Query: 1 MGRLHLVDLAGSERQAKTG-ASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSK 59
+G+L+LVDLAGSE +K G G R++E IN SL TLG VI+ALVD + H+PYR SK
Sbjct: 259 IGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPHVPYRESK 317
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQD 112
LTR+LQ+SLGG +KT + AT+ P + EET+STL YA R K I NK VNQ
Sbjct: 318 LTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQK 370
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 236 bits (604), Expect = 2e-77
Identities = 66/152 (43%), Positives = 88/152 (57%), Gaps = 24/152 (15%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCT--------- 51
R+ LVDLAGSER T A+GQRL+E S IN SL+TLG VI+AL D K +
Sbjct: 292 SSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVK 351
Query: 52 ------------HIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASR 99
+PYR+S LT +L+DSLGGNSKT M A + P +Y+ET+STLRYA +
Sbjct: 352 SGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQ 409
Query: 100 VKKICNKARVNQDPKDALLIKYQKEISELKKK 131
K+I +A VNQ + + +I + +
Sbjct: 410 AKRIRTRAVVNQVDGVSAAER-DAQIPSIVHR 440
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 233 bits (596), Expect = 3e-77
Identities = 53/103 (51%), Positives = 69/103 (66%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+++LVDLAGSER K+G+ GQ LKEA+ IN SLS L I AL D K HIP+R KL
Sbjct: 256 TSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKL 315
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
T L+DSLGGN V+ + + EET+S+LR+ASR+K +
Sbjct: 316 THALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 230 bits (589), Expect = 3e-76
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSK 59
+G++ +DLAGSER A T + ++ + + + IN SL L I A+ K HIP+R+S+
Sbjct: 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSE 287
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLI 119
LT++L+D G SK++M A + P E+T++TLRY+SRVK N + + LL
Sbjct: 288 LTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLLG 347
Query: 120 KYQKEISELKK 130
Sbjct: 348 LDSSRTGHHHH 358
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 228 bits (585), Expect = 6e-76
Identities = 62/103 (60%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
G+L+LVDLAGSE+ +KTGA G L EA IN SLS LGNVISAL +G T++PYR+SK+
Sbjct: 224 SGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKM 282
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
TRILQDSLGGN +T + P+SYN ET STL + R K I
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 227 bits (580), Expect = 6e-75
Identities = 63/103 (61%), Positives = 83/103 (80%), Gaps = 2/103 (1%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNS 58
+ + H VDLAGSER KTG++G+RLKE+ +IN SL LGNVISAL D + +HIPYR+S
Sbjct: 242 VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDS 301
Query: 59 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 101
K+TRIL+DSLGGN+KTVM A V P+S +++ET++TL YASR +
Sbjct: 302 KITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 226 bits (579), Expect = 9e-75
Identities = 69/110 (62%), Positives = 81/110 (73%), Gaps = 5/110 (4%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVD-----GKCTHIPY 55
+G+L LVDLAGSER KTGA+G RLKE S IN SL+TLG VISAL D K +PY
Sbjct: 243 VGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPY 302
Query: 56 RNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICN 105
R+S LT +L+DSLGGNSKT M ATV PA+ NY+ET+STLRYA R K +
Sbjct: 303 RDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHHHH 352
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 225 bits (575), Expect = 4e-74
Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISAL--VDGKCTHIPYRNSK 59
G+L+LVDLAGSER + +G+RL+E IN SLS LG+VI AL D +IP+RNSK
Sbjct: 241 GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSK 300
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 108
LT +LQ SL G+SKT+M + P + ET+++LR+AS+V R
Sbjct: 301 LTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAKR 349
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 225 bits (575), Expect = 4e-74
Identities = 55/110 (50%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALV--DGKCTHIPYRNS 58
G L+LVDLAGSER + G RL+E IN SLS LG+VI AL D HIP+RNS
Sbjct: 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNS 296
Query: 59 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 108
KLT +LQ SL G+SKT+M + P+S + ET+++LR+AS+V +R
Sbjct: 297 KLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 222 bits (568), Expect = 4e-73
Identities = 59/105 (56%), Positives = 77/105 (73%), Gaps = 2/105 (1%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG--KCTHIPYRNS 58
+ ++ L+DLAGSER + +GA G R E + IN SL LGNVI+AL D K HIPYRNS
Sbjct: 251 IAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNS 310
Query: 59 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
KLTR+L+DSLGGN +T+M A V P+S Y++T +TL+YA+R K I
Sbjct: 311 KLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 222 bits (569), Expect = 1e-72
Identities = 55/110 (50%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALV--DGKCTHIPYRNS 58
G L+LVDLAGSER + G RL+E IN SLS LG+VI AL D HIP+RNS
Sbjct: 293 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNS 352
Query: 59 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKAR 108
KLT +LQ SL G+SKT+M + P+S + ET+++LR+AS+V +R
Sbjct: 353 KLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 217 bits (554), Expect = 3e-71
Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G+L+LVDLAGSER K+GA G RL+EA IN SLS LG+VI+AL + H+P+RNSKLT
Sbjct: 228 GKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-GHVPFRNSKLT 286
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
+LQDSL G+SKT+M V P N ET+ +L++A RV+ +
Sbjct: 287 YLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 219 bits (559), Expect = 5e-71
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 6/125 (4%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G ++LVDLAGSE + R+ E IN SLS L NVI AL+ + HIPYRNSKL
Sbjct: 285 VGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQKQ-DHIPYRNSKL 339
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI-CNKARVNQDPKDALLI 119
T +L SLGGNSKT+M V P ++E++ +LR+A+ V KA+ N+ +++
Sbjct: 340 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVAN 399
Query: 120 KYQKE 124
+
Sbjct: 400 SSTQS 404
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 216 bits (553), Expect = 3e-70
Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSK 59
G+ LVDLAG+ER A T ++ ++ + E ++IN SL L I AL K H P+R SK
Sbjct: 299 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESK 357
Query: 60 LTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQ 111
LT++L+DS +G NS+T M A + P + E T++TLRYA RVK++ + +
Sbjct: 358 LTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHHHHH 410
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 210 bits (538), Expect = 3e-68
Identities = 52/105 (49%), Positives = 71/105 (67%), Gaps = 5/105 (4%)
Query: 2 GRLHLVDLAGSERQAKTGASG----QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRN 57
L LVDLAGSER A G +RL+E IN SLSTLG VI AL + + +H+PYRN
Sbjct: 272 APLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-SHVPYRN 330
Query: 58 SKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKK 102
SKLT +LQ+SLGG++K +M + P N E++++LR+AS+V +
Sbjct: 331 SKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQ 375
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 210 bits (536), Expect = 8e-68
Identities = 49/109 (44%), Positives = 71/109 (65%), Gaps = 3/109 (2%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLK-EASKINLSLSTLGNVISALVDGKCTHIPYRNSK 59
G+ LVDLAG+ER A T ++ ++ + E ++IN SL L I AL K H P+R SK
Sbjct: 279 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESK 337
Query: 60 LTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKA 107
LT++L+DS +G NS+T M AT+ P + E T++TLRYA RVK++ +
Sbjct: 338 LTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHS 386
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 176 bits (448), Expect = 3e-58
Identities = 50/99 (50%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 28 ASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNY 87
A IN SLS LGNVISAL +G TH+PYR+SK+TRILQDSL GN +T + P+ +N
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 88 EETISTLRYASRVKKICNKARVNQD-PKDALLIKYQKEI 125
ET STL + R K I N VN + + KY+KE
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEK 99
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 175 bits (447), Expect = 7e-58
Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 32 NLSLSTLGNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETI 91
N SLS LGNVISAL +G TH+PYR+SK+TRILQDSLGGN +T + P+ +N ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 92 STLRYASRVKKICNKARVNQD-PKDALLIKYQKEISELKK---KSYNYEETISTLR 143
STL + R K I N VN + + KY+KE + K + E ++ R
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-06
Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 55/186 (29%)
Query: 16 AK-TGASGQRL-KEASKIN-LSLSTLGNVISALV-DGKCTHIPYRN---SKLTRILQDSL 68
K Q L +E N LS +I+ + DG T +++ KLT I++ SL
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 69 GGNSKTVMCATVGPASY--NYEE-------------TISTLRYASR-------VKKICNK 106
+ PA Y ++ +S + + V K+
Sbjct: 364 ---------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 107 ARVNQDPKD------ALLIKYQKEISELKKKSYNYEETISTLRYASRVKKICNKARPPG- 159
+ V + PK+ ++ ++ + ++ +I Y + PP
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSIVD-HYNIPKTFDSDDLIPPYL 469
Query: 160 -SYVLW 164
Y
Sbjct: 470 DQYFYS 475
Score = 36.8 bits (84), Expect = 0.002
Identities = 30/204 (14%), Positives = 58/204 (28%), Gaps = 60/204 (29%)
Query: 5 HLVDLAGSERQAKTGASGQRLKEASKINLS----LSTLGNVISALVDGKCTHI---PYRN 57
H +D E Q + ++A N +++S + HI
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEEIDHIIMSKDAV 61
Query: 58 SKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLR------------YASRVKKICN 105
S R+ L + V NY+ +S ++ Y + ++ N
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 106 KARVNQDPKDALLIKYQ----KEISELKKKSYNYEETISTLRYASRV---------K--- 149
NQ + KY + +L++ LR A V K
Sbjct: 122 ---DNQ-----VFAKYNVSRLQPYLKLRQALLE-------LRPAKNVLIDGVLGSGKTWV 166
Query: 150 --KICN----KARPPGSYVLWVGV 167
+C + + + W+ +
Sbjct: 167 ALDVCLSYKVQCKMDFK-IFWLNL 189
Score = 34.1 bits (77), Expect = 0.019
Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 46/161 (28%)
Query: 24 RLKEASKINLSLSTL---GNVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATV 80
RL+ K+ +L L NV+ +DG + G+ KT + V
Sbjct: 133 RLQPYLKLRQALLELRPAKNVL---IDG-------------------VLGSGKTWVALDV 170
Query: 81 GPASYNYEETIS------TLRYASRVKKICNKARVNQDPKDALLIKYQKEISELKKKSYN 134
SY + + L+ CN + LL + + S N
Sbjct: 171 C-LSYKVQCKMDFKIFWLNLKN-------CNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 135 YEETISTLRYASRVKKICNKARPPGSYVL---WVGVNSWVV 172
+ I +++ R + + +K VL N+
Sbjct: 223 IKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQ---NAKAW 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.23
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 24/86 (27%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSL-------------STLGNVISALVD 47
M L + +L + Q + L ++ +SL +L + L
Sbjct: 338 M--LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 48 GKC------THIPYRNSKL---TRIL 64
K + IP+ KL R L
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFL 421
Score = 27.3 bits (60), Expect = 3.2
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 30/68 (44%)
Query: 5 HLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTRIL 64
H++D G G S LG + DG + I+
Sbjct: 500 HILDF---------GPGG------------ASGLGVLTHRNKDGTGVRV---------IV 529
Query: 65 QDSLGGNS 72
+L N
Sbjct: 530 AGTLDINP 537
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 30.6 bits (70), Expect = 0.26
Identities = 19/143 (13%), Positives = 35/143 (24%), Gaps = 48/143 (33%)
Query: 40 NVISALVDGKCTHIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRY--- 96
++I L G +QD + T S + + LR+
Sbjct: 171 SIICYLTFGN--KEDTLVHAFHDCVQDLMK---------TWDHWSIQILDMVPFLRFFPN 219
Query: 97 --ASRVKKICNKA-----------RVNQDPK------DALLIKYQKEISELKKKSYNYE- 136
R+K+ + + D +L ++ E
Sbjct: 220 PGLWRLKQAIENRDHMVEKQLRRHKESMVAGQWRDMTDYMLQGVGRQRVEEGPGQLLEGH 279
Query: 137 -------------ETIS-TLRYA 145
ET + TL +A
Sbjct: 280 VHMSVVDLFIGGTETTASTLSWA 302
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A
{Mycobacterium tuberculosis}
Length = 386
Score = 28.3 bits (63), Expect = 1.5
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 47 DGKCTHIPY 55
DG+C +PY
Sbjct: 96 DGRCKLVPY 104
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 27.1 bits (61), Expect = 3.6
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 9 LAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
L G + GA+ +K + + + V L + K P R +
Sbjct: 163 LEGLRKITSRGANTLEMKAKKE---EQAIIEKVYQYLTETK---QPIRKGDWS 209
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 26.7 bits (60), Expect = 4.8
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 13/48 (27%)
Query: 23 QRLKEAS---KINLSLSTLGNV----ISALVDG-KCTHIPYRNSKLTR 62
QRLKEA+ KI LS + +V I+A G K H+ N K+TR
Sbjct: 260 QRLKEAAEKAKIELSSAQQTDVNLPYITADATGPK--HM---NIKVTR 302
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol-
4-carboxamid ribonucleotid...; isomerase, histidine
biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1
PDB: 2cff_A 2w79_A
Length = 241
Score = 26.0 bits (58), Expect = 6.0
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 3 RLHLVDLAGSERQAKTGASGQR--LKEASKINL 33
+H+VDL+ A + L++ S+
Sbjct: 46 LIHVVDLSN----AIENSGENLPVLEKLSEFAE 74
>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC,
DERA, structur genomics, structural genomics consortium,
SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1
Length = 281
Score = 25.8 bits (57), Expect = 9.3
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 145 ASRVKKICNKARPPGSYVLWVGVN-SWV 171
++++CN++ + V V +V
Sbjct: 47 EDDIRELCNESVKTCPFAAAVCVYPKFV 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.367
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,438,408
Number of extensions: 125627
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 74
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.5 bits)