RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11231
(172 letters)
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 161 bits (408), Expect = 1e-49
Identities = 75/131 (57%), Positives = 96/131 (73%), Gaps = 3/131 (2%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
G+L LVDLAGSE+ KTGASGQ L+EA KIN SLS LG VI+AL DGK +H+PYR+SKL
Sbjct: 227 SGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKL 286
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIK 120
TRILQ+SLGGNS+T + P+SYN ET+STLR+ R K I NKA+VN + A L
Sbjct: 287 TRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL-- 344
Query: 121 YQKEISELKKK 131
++ +++ K +
Sbjct: 345 -KQMLAKAKTQ 354
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 148 bits (373), Expect = 2e-44
Identities = 64/135 (47%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 3 RLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLTR 62
+L VDLAGSER K+G++G +LKEA IN SLS LG+VISAL HIPYRN KLT
Sbjct: 223 KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS-GNQHIPYRNHKLTM 281
Query: 63 ILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNKARVNQDPKDALLIKYQ 122
++ DSLGGN+KT+M + PA N +ET ++L YASRV+ I N N K+ + + +
Sbjct: 282 LMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE--VARLK 339
Query: 123 KEISELKKKSYNYEE 137
K +S K+++ +
Sbjct: 340 KLVSYWKEQAGRKGD 354
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 147 bits (372), Expect = 3e-44
Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 1 MGRLHLVDLAGSERQAKTGASG-QRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSK 59
G+ LVDLAG+ER A T ++ Q E ++IN SL L I AL K H P+R SK
Sbjct: 258 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESK 316
Query: 60 LTRILQDS-LGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
LT++L+DS +G NS+T M A + P + E T++TLRYA RVK++
Sbjct: 317 LTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 145 bits (366), Expect = 8e-44
Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G+L+LVDLAGSE+ +KTGA G L EA IN SLS LGNVISAL +G T++PYR+SK+T
Sbjct: 223 GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMT 281
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
RILQDSLGGN +T + P+SYN ET STL + R K I
Sbjct: 282 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 142 bits (359), Expect = 1e-42
Identities = 60/111 (54%), Positives = 74/111 (66%), Gaps = 11/111 (9%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDG-----------KC 50
++ LVDLAGSER TGA G RLKE + IN SL+TLG VISAL + K
Sbjct: 239 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 298
Query: 51 THIPYRNSKLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 101
IPYR+S LT +L+++LGGNS+T M A + PA NY+ET+STLRYA R K
Sbjct: 299 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 142 bits (358), Expect = 2e-42
Identities = 43/102 (42%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQ-RLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSK 59
+G++ +DLAGSER A T + + + + IN SL L I A+ K HIP+R+S+
Sbjct: 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSE 287
Query: 60 LTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 101
LT++L+D G SK++M A + P E+T++TLRY+SRVK
Sbjct: 288 LTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 141 bits (356), Expect = 3e-42
Identities = 54/105 (51%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALV--DGKCTHIPYRNS 58
G L+LVDLAGSER + G RL+E IN SLS LG+VI AL D HIP+RNS
Sbjct: 235 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNS 294
Query: 59 KLTRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKI 103
KLT +LQ SL G+SKT+M + P+S + ET+++LR+AS+V
Sbjct: 295 KLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNST 339
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 138 bits (347), Expect = 1e-40
Identities = 46/100 (46%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 2 GRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKLT 61
G ++LVDLA +++ + R+ E IN SLS L NVI AL+ + HIPYRNSKLT
Sbjct: 272 GSINLVDLA----GSESPKTSTRMTETKNINRSLSELTNVILALLQKQ-DHIPYRNSKLT 326
Query: 62 RILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVK 101
+L SLGGNSKT+M V P ++E++ +LR+A+ V
Sbjct: 327 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVN 366
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 137 bits (344), Expect = 2e-40
Identities = 64/106 (60%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 1 MGRLHLVDLAGSERQAKTGASGQRLKEASKINLSLSTLGNVISALVDGKCTHIPYRNSKL 60
+G+L+LVDLAGSE ++GA +R +EA IN SL TLG VI+ALV+ + H+PYR SKL
Sbjct: 241 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRESKL 299
Query: 61 TRILQDSLGGNSKTVMCATVGPASYNYEETISTLRYASRVKKICNK 106
TRILQDSLGG ++T + AT+ PAS N EET+STL YA R K I NK
Sbjct: 300 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 345
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 246
Score = 29.6 bits (66), Expect = 0.17
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 73 KTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN---QDPKDAL-LIKYQKEISEL 128
KT + T+GP + + EE ++ + + N R+N D + I+ + +
Sbjct: 3 KTKIVCTIGPKTES-EEMLAKM-----LDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSK 56
Query: 129 KKKSYNYEETISTLRYASRVKKICNKA 155
K+ A + K+
Sbjct: 57 TGKTAAILLDTKGPALAEKDKQDLIFG 83
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 265
Score = 26.5 bits (58), Expect = 1.7
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 58 SKLTRILQDSLGGNS---KTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 110
S+L R+ ++ S +T + T+GP + N ET+ L K N R+N
Sbjct: 2 SRLERLTSLNVVAGSDLRRTSIIGTIGPKTNN-PETLVAL-----RKAGLNIVRMN 51
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 282
Score = 25.8 bits (56), Expect = 3.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 73 KTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 110
T + T+GPAS + ET+ + +K N AR+N
Sbjct: 32 NTGIICTIGPASRS-VETLKEM-----IKSGMNVARMN 63
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal
domain {Leishmania mexicana [TaxId: 5665]}
Length = 258
Score = 25.3 bits (55), Expect = 3.5
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 73 KTVMCATVGPASYNYEETISTLRYASRVKKICNKARVN 110
+ T+GP++ + E + L ++ + AR+N
Sbjct: 20 AARIICTIGPSTQS-VEALKGL-----IQSGMSVARMN 51
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.0 bits (54), Expect = 5.6
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 106 KARVN-----QDPKDALLIKYQKEISELKKKSYNYEETISTLRYASRVKKICNKARPP 158
K ++ Q + ++Q E+ EL+ K + + + + R +I + P
Sbjct: 24 KEKLLSLKTLQSELFEVEKEFQVEMFELENK---FLQKYKPI-WEQR-SRIISGQEQP 76
>d1stza2 d.110.2.3 (A:101-336) Heat-inducible transcription
repressor HrcA, C-terminal domain {Thermotoga maritima
[TaxId: 2336]}
Length = 236
Score = 24.5 bits (53), Expect = 7.5
Identities = 2/23 (8%), Positives = 3/23 (13%)
Query: 78 ATVGPASYNYEETISTLRYASRV 100
Y+ Y
Sbjct: 205 YLFTSKVTKYDRNHRVFEYILNR 227
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.367
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 590,080
Number of extensions: 24310
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 26
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.8 bits)