BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11234
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IUR5|TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens
GN=TMTC1 PE=1 SV=3
Length = 882
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 7 RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFV-----SCFCV 61
R LT+ YL FNVWLLL P L +DWQ GSIPLV ++ D+RN AT L V S C+
Sbjct: 313 RFLTYSYLLAFNVWLLLAPVTLCYDWQVGSIPLVETIWDMRNLATIFLAVVMALLSLHCL 372
Query: 62 AYKAVCDLETFSVLTSLHALAF 83
A A LE VL L L F
Sbjct: 373 A--AFKRLEHKEVLVGLLFLVF 392
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 7 RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFV-----SCFCV 61
R LT+ YL FNVWLLL P L +DWQ GSIPLV ++ DVRN AT LL V S CV
Sbjct: 373 RFLTYSYLLAFNVWLLLAPITLCYDWQVGSIPLVETIWDVRNLATILLAVVMALLSLHCV 432
Query: 62 AYKAVCDLETFSVLTSLHALAF 83
A A LE VL L L F
Sbjct: 433 A--AFKRLEHKEVLAGLLFLVF 452
>sp|Q6ZXV5|TMTC3_HUMAN Transmembrane and TPR repeat-containing protein 3 OS=Homo sapiens
GN=TMTC3 PE=1 SV=2
Length = 915
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 7 RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFVSCF 59
R LTF YL N WLLL P+ L DW G+IPL+ SL D+RN AT F CF
Sbjct: 279 RQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESLLDIRNLATFTFF--CF 329
>sp|Q8BRH0|TMTC3_MOUSE Transmembrane and TPR repeat-containing protein 3 OS=Mus musculus
GN=Tmtc3 PE=2 SV=2
Length = 920
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 7 RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFVSCF 59
R LTF YL N WLLL P+ L DW G+IPL+ S DVRN AT F CF
Sbjct: 284 RQLTFNYLLPVNAWLLLNPSELCCDWTMGTIPLIESFLDVRNLATFAFF--CF 334
>sp|Q6DCD5|TMTC2_XENLA Transmembrane and TPR repeat-containing protein 2 OS=Xenopus laevis
GN=tmtc2 PE=2 SV=1
Length = 836
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 7 RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFVSCFCVAYKAV 66
R LTF YL N+WLL CP LS DW ++PL+ ++ D RN T ++ +AY ++
Sbjct: 269 RTLTFFYLPTKNLWLLFCPDTLSFDWSMDAVPLIKTITDWRNIHTVAFYILLILLAYSSL 328
>sp|Q56A06|TMTC2_MOUSE Transmembrane and TPR repeat-containing protein 2 OS=Mus musculus
GN=Tmtc2 PE=2 SV=1
Length = 836
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 6 CRLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFVSCFCVAY 63
R LTF YL N+WLLLCP LS DW ++PL+ ++ D RN T + +AY
Sbjct: 268 ARTLTFLYLPTKNLWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYSGLLLLAY 325
>sp|Q9V3X5|TMTC2_DROME Transmembrane and TPR repeat-containing protein CG4341
OS=Drosophila melanogaster GN=CG4341 PE=2 SV=1
Length = 938
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%)
Query: 7 RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFVSCFCVAY 63
RLLTF YL VFN+ LLL P LS DW ++P VTSL D RN + + VA+
Sbjct: 291 RLLTFLYLPVFNLRLLLQPNVLSFDWGMDALPRVTSLWDRRNAQSACFYSVLVGVAW 347
>sp|Q8N394|TMTC2_HUMAN Transmembrane and TPR repeat-containing protein 2 OS=Homo sapiens
GN=TMTC2 PE=2 SV=1
Length = 836
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 6 CRLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFV 56
R LTF YL N+WLLLCP LS DW ++PL+ ++ D RN T +
Sbjct: 268 TRTLTFFYLPTKNLWLLLCPDTLSFDWSMDAVPLLKTVCDWRNLHTVAFYT 318
>sp|Q8BG19|TMTC4_MOUSE Transmembrane and TPR repeat-containing protein 4 OS=Mus musculus
GN=Tmtc4 PE=2 SV=1
Length = 741
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 6 CRLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFVSCFCVAYKA 65
R + + Y N WLLLCP L DW G IPL+ S+GD R A L++ + ++A
Sbjct: 313 VRAINYNYYYSLNAWLLLCPWWLCFDWSMGCIPLIKSVGDWRVIALAALWLCLIGLIFQA 372
Query: 66 VCDLET 71
+C ++
Sbjct: 373 LCSEDS 378
>sp|Q9VF81|TMTC4_DROME Transmembrane and TPR repeat-containing protein CG5038
OS=Drosophila melanogaster GN=CG5038 PE=1 SV=1
Length = 705
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 7 RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVR 47
R L+ YL V N+WL+LCP L +DW G + LVT++ D+R
Sbjct: 279 RGLSQQYLLVMNIWLMLCPHWLCYDWALGCVKLVTNIWDLR 319
>sp|Q9VQE9|TMTC1_DROME Transmembrane and TPR repeat-containing protein CG31690
OS=Drosophila melanogaster GN=CG31690 PE=2 SV=3
Length = 859
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 7 RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFVSCFCVAYKA 65
R LTF YL V N +LL P LS DW ++ + +L D RN T + S + +K
Sbjct: 288 RTLTFLYLPVANFGILLWPQELSFDWGMEAVSRIRTLWDARNILTAGFYGSLVAILWKG 346
>sp|Q5T4D3|TMTC4_HUMAN Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens
GN=TMTC4 PE=2 SV=2
Length = 741
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 7 RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLF 55
R + + Y N WLLLCP L DW G IPL+ S+ D R A L+
Sbjct: 314 RAVNYNYYYSLNAWLLLCPWWLCFDWSMGCIPLIKSISDWRVIALAALW 362
>sp|Q7K4B6|TMTC3_DROME Transmembrane and TPR repeat-containing protein CG4050
OS=Drosophila melanogaster GN=CG4050 PE=2 SV=1
Length = 926
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 7 RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFVS 57
R LT+ YL N WLLLCP+ L DW G++PL+ D RN T L F++
Sbjct: 344 RQLTYGYLIYLNCWLLLCPSLLCCDWTMGTVPLLQGFTDSRNITTLLTFLA 394
>sp|Q20144|TMTC1_CAEEL Transmembrane and TPR repeat-containing protein F38B6.6
OS=Caenorhabditis elegans GN=F38B6.6 PE=3 SV=2
Length = 690
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 7 RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLF-VSCFCVAYKA 65
R++ + Y+ +++ +LL+ P +L D+ G I +T++ D+R + L+F + V ++
Sbjct: 273 RMINYTYIWLYHAYLLVIPVNLCFDYSMGCISSITTMWDLRALSPVLIFTIVIIGVKFQN 332
Query: 66 VCDLETFSVLTSL 78
C T S L +
Sbjct: 333 ECRAFTLSSLMGI 345
>sp|Q5QU21|SUCC_IDILO Succinyl-CoA ligase [ADP-forming] subunit beta OS=Idiomarina
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
GN=sucC PE=3 SV=1
Length = 388
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 18 NVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFA 50
++W++ C H + G + LV SL DVR FA
Sbjct: 41 DIWVVKCQVHAGGRGKAGGVKLVKSLDDVRAFA 73
>sp|P57441|SYN_BUCAI Asparagine--tRNA ligase OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=asnS PE=3 SV=1
Length = 466
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 27 HLSHDWQFGSIPLVTSLGDVRNFATCLLFVSCFCVAYKAVCDL 69
HL+ W T L D+ +FA C+L C + K + D+
Sbjct: 243 HLAEFWMLEVESAFTDLNDISDFAECMLKYVCKSLLKKCITDI 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.334 0.142 0.488
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,257,236
Number of Sequences: 539616
Number of extensions: 1090447
Number of successful extensions: 4384
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4366
Number of HSP's gapped (non-prelim): 21
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)