Query psy11234
Match_columns 98
No_of_seqs 101 out of 179
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 21:36:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08409 DUF1736: Domain of un 100.0 1.1E-30 2.4E-35 175.0 6.1 60 2-61 20-79 (80)
2 PF05545 FixQ: Cbb3-type cytoc 34.3 74 0.0016 18.7 3.3 25 45-69 9-33 (49)
3 PF08172 CASP_C: CASP C termin 30.8 47 0.001 26.2 2.5 24 1-24 213-236 (248)
4 PF05915 DUF872: Eukaryotic pr 26.8 1.2E+02 0.0025 21.4 3.7 16 75-90 77-92 (115)
5 PF13493 DUF4118: Domain of un 24.0 1.2E+02 0.0026 19.3 3.2 22 41-62 74-95 (105)
6 PF08219 TOM13: Outer membrane 22.3 29 0.00063 23.5 0.0 12 79-90 38-49 (77)
7 PLN02755 complex I subunit 18.7 69 0.0015 21.4 1.2 24 44-67 29-53 (71)
8 PF02632 BioY: BioY family; I 16.6 1E+02 0.0022 22.3 1.8 18 74-91 116-133 (148)
9 PRK03427 cell division protein 13.4 2.4E+02 0.0052 23.6 3.4 27 44-70 3-29 (333)
10 KOG4753|consensus 13.1 3.1E+02 0.0067 20.1 3.5 41 48-88 52-98 (124)
No 1
>PF08409 DUF1736: Domain of unknown function (DUF1736); InterPro: IPR013618 This domain of unknown function is found in various hypothetical metazoan proteins.
Probab=99.96 E-value=1.1e-30 Score=174.99 Aligned_cols=60 Identities=45% Similarity=0.781 Sum_probs=57.4
Q ss_pred CCchhhHHhhhhHHHHHHHHHHhCcccccccCCCCccccCcchhHHHHHHHHHHHHHHHH
Q psy11234 2 GLGTCRLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFVSCFCV 61 (98)
Q Consensus 2 ~s~~tR~LT~~YL~~~n~wLLl~P~~Lc~DWSMg~IPlI~S~~D~Rnl~t~~fy~~l~~l 61 (98)
.++++|.+||+||+++|+|||++|.+|||||||||||+|||++|+||++|+++|++++++
T Consensus 20 ~~~~tR~LT~~yl~~~n~~LLl~P~~L~~DWSm~~IPli~s~~D~Rn~~tl~~~~~l~~l 79 (80)
T PF08409_consen 20 PSLLTRWLTYNYLPAFNLWLLLFPSWLCFDWSMGCIPLIESLWDPRNLATLLFYSALAAL 79 (80)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCccccCCcCCCCcccccCccccHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999988764
No 2
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=34.31 E-value=74 Score=18.65 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Q psy11234 45 DVRNFATCLLFVSCFCVAYKAVCDL 69 (98)
Q Consensus 45 D~Rnl~t~~fy~~l~~l~~~~~~~~ 69 (98)
..|-+.++++.++.+++++.+.+..
T Consensus 9 ~~~~~~~v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 9 FARSIGTVLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4566778888888777777777544
No 3
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=30.82 E-value=47 Score=26.21 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.0
Q ss_pred CCCchhhHHhhhhHHHHHHHHHHh
Q psy11234 1 MGLGTCRLLTFCYLAVFNVWLLLC 24 (98)
Q Consensus 1 ~~s~~tR~LT~~YL~~~n~wLLl~ 24 (98)
++++.+|.+-+.|...+|++.++.
T Consensus 213 L~nr~~R~~f~~Y~l~LH~lvf~~ 236 (248)
T PF08172_consen 213 LSNRTTRMLFFFYCLGLHLLVFFV 236 (248)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999988664
No 4
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=26.77 E-value=1.2e+02 Score=21.43 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=10.6
Q ss_pred hhhhhhhhccccccch
Q psy11234 75 LTSLHALAFCSIRGIL 90 (98)
Q Consensus 75 ~~~l~~lv~PFip~~~ 90 (98)
.-=+.+.++.||||.-
T Consensus 77 ~~llilG~L~fIPG~Y 92 (115)
T PF05915_consen 77 WALLILGILCFIPGFY 92 (115)
T ss_pred chHHHHHHHHHhccHH
Confidence 3345556788999963
No 5
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=23.95 E-value=1.2e+02 Score=19.35 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=15.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q psy11234 41 TSLGDVRNFATCLLFVSCFCVA 62 (98)
Q Consensus 41 ~S~~D~Rnl~t~~fy~~l~~l~ 62 (98)
-.+.|++++.+.+.|.+.+.++
T Consensus 74 ~~~~~~~~~~~~~~~l~va~v~ 95 (105)
T PF13493_consen 74 FLVYDPQDWITFAVFLVVALVT 95 (105)
T ss_dssp T-SS-HHHHHHHHHHHHHHHHH
T ss_pred hhhcChhHHHHHHHHHHHHHHH
Confidence 4678999999999998776543
No 6
>PF08219 TOM13: Outer membrane protein TOM13; InterPro: IPR013262 The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins [].; GO: 0005741 mitochondrial outer membrane
Probab=22.33 E-value=29 Score=23.53 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=9.8
Q ss_pred hhhhccccccch
Q psy11234 79 HALAFCSIRGIL 90 (98)
Q Consensus 79 ~~lv~PFip~~~ 90 (98)
..|++|||+|..
T Consensus 38 INL~LPFiNG~M 49 (77)
T PF08219_consen 38 INLVLPFINGMM 49 (77)
T ss_pred hhhhhhhhhhhh
Confidence 468999999964
No 7
>PLN02755 complex I subunit
Probab=18.68 E-value=69 Score=21.42 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHh
Q psy11234 44 GDVRNFATCLLFVSCF-CVAYKAVC 67 (98)
Q Consensus 44 ~D~Rnl~t~~fy~~l~-~l~~~~~~ 67 (98)
|-+||+.....|.+++ +++++++.
T Consensus 29 WT~Rt~~i~~ifgv~VP~liy~giv 53 (71)
T PLN02755 29 WTRRNLAVVGIFGIAVPILVYKGIV 53 (71)
T ss_pred cccchhhhhhhhhhhhhHHhhhhhh
Confidence 3489999999998777 56666654
No 8
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=16.61 E-value=1e+02 Score=22.27 Aligned_cols=18 Identities=22% Similarity=0.076 Sum_probs=13.7
Q ss_pred ehhhhhhhhccccccchh
Q psy11234 74 VLTSLHALAFCSIRGILN 91 (98)
Q Consensus 74 v~~~l~~lv~PFip~~~~ 91 (98)
...++..-++||+|||.-
T Consensus 116 ~~~al~~g~~pFip~Di~ 133 (148)
T PF02632_consen 116 LSKALAAGVLPFIPGDIL 133 (148)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 334777788899999973
No 9
>PRK03427 cell division protein ZipA; Provisional
Probab=13.43 E-value=2.4e+02 Score=23.65 Aligned_cols=27 Identities=7% Similarity=0.039 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy11234 44 GDVRNFATCLLFVSCFCVAYKAVCDLE 70 (98)
Q Consensus 44 ~D~Rnl~t~~fy~~l~~l~~~~~~~~~ 70 (98)
-|-|.++.++=-+++++++.+++...+
T Consensus 3 qdLrLiLivvGAIAIiAlL~HGlWtsR 29 (333)
T PRK03427 3 QDLRLILIIVGAIAIIALLVHGFWTSR 29 (333)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhcc
Confidence 488988888777777788777776433
No 10
>KOG4753|consensus
Probab=13.06 E-value=3.1e+02 Score=20.12 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh------ccCcceehhhhhhhhcccccc
Q psy11234 48 NFATCLLFVSCFCVAYKAVC------DLETFSVLTSLHALAFCSIRG 88 (98)
Q Consensus 48 nl~t~~fy~~l~~l~~~~~~------~~~~~~v~~~l~~lv~PFip~ 88 (98)
|++++++...+..+..-.+- ..+..+-+.=+...++.||||
T Consensus 52 ~lavvL~~fg~Lli~lg~fl~~~~~~ag~~~~gv~f~V~G~L~FiPG 98 (124)
T KOG4753|consen 52 ALAVVLLVFGLLLIGLGFFLAGGRVEAGDRSQGVFFFVLGILLFIPG 98 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHheecceeeCCCcceEEEehhhhHhcccc
Done!