Query psy11234
Match_columns 98
No_of_seqs 101 out of 179
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 21:36:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ksf_A Sensor protein KDPD; me 21.1 99 0.0034 20.0 3.4 21 42-62 76-96 (107)
2 4dve_A Biotin transporter BIOY 12.0 1.4E+02 0.0047 21.8 2.5 12 80-91 164-175 (198)
3 1x0p_A Hypothetical protein TL 11.1 60 0.0021 22.2 0.3 16 26-41 85-100 (143)
4 1xrd_A LH-1, light-harvesting 9.6 3.3E+02 0.011 16.2 3.4 14 43-56 7-20 (52)
5 2hfn_A Synechocystis photorece 8.4 73 0.0025 22.1 -0.1 16 26-41 88-103 (153)
6 2iyg_A APPA, antirepressor of 8.3 78 0.0027 21.5 -0.0 13 26-38 98-110 (124)
7 2byc_A Blue-light receptor of 7.1 79 0.0027 21.7 -0.4 14 26-39 87-100 (137)
8 3arc_Z Photosystem II reaction 6.5 1.9E+02 0.0066 17.8 1.2 18 77-94 44-61 (62)
9 1w1n_A Phosphatidylinositol 3- 6.5 90 0.0031 16.7 -0.3 13 39-51 12-24 (33)
10 1yrx_A Hypothetical protein RS 6.4 75 0.0026 21.4 -0.8 14 26-39 86-99 (121)
No 1
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=21.07 E-value=99 Score=19.99 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.6
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q psy11234 42 SLGDVRNFATCLLFVSCFCVA 62 (98)
Q Consensus 42 S~~D~Rnl~t~~fy~~l~~l~ 62 (98)
++.|+.|+.|+..+.+.+.++
T Consensus 76 ~i~~~~~~vt~~v~l~val~~ 96 (107)
T 2ksf_A 76 AVSDVQYLLTFAVMLTVGLVI 96 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH
T ss_pred cccCHhHHHHHHHHHHHHHHH
Confidence 357999999999998777543
No 2
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=11.95 E-value=1.4e+02 Score=21.76 Aligned_cols=12 Identities=17% Similarity=-0.064 Sum_probs=9.2
Q ss_pred hhhccccccchh
Q psy11234 80 ALAFCSIRGILN 91 (98)
Q Consensus 80 ~lv~PFip~~~~ 91 (98)
..++||+|||+-
T Consensus 164 ~~~~pFipgDli 175 (198)
T 4dve_A 164 ISNLVFIPGDCI 175 (198)
T ss_dssp HHGGGGHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 356799999963
No 3
>1x0p_A Hypothetical protein TLL0078; BLUF, FAD, structural genomics, electron transport; HET: FAD; 2.00A {Thermosynechococcus elongatus} SCOP: d.58.10.2
Probab=11.12 E-value=60 Score=22.23 Aligned_cols=16 Identities=13% Similarity=0.271 Sum_probs=11.7
Q ss_pred cccccccCCCCccccC
Q psy11234 26 AHLSHDWQFGSIPLVT 41 (98)
Q Consensus 26 ~~Lc~DWSMg~IPlI~ 41 (98)
...--||+|+.+++=+
T Consensus 85 ~R~F~~W~M~~~~~~~ 100 (143)
T 1x0p_A 85 ERTFINWSMRLVQLGE 100 (143)
T ss_dssp SCSSCSCSCCEEEGGG
T ss_pred ccccCCCcceeecccc
Confidence 3445699999998655
No 4
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=9.59 E-value=3.3e+02 Score=16.22 Aligned_cols=14 Identities=29% Similarity=0.057 Sum_probs=10.4
Q ss_pred chhHHHHHHHHHHH
Q psy11234 43 LGDVRNFATCLLFV 56 (98)
Q Consensus 43 ~~D~Rnl~t~~fy~ 56 (98)
+.|||-.....+..
T Consensus 7 ~fDPrr~Lva~~~f 20 (52)
T 1xrd_A 7 LFDPRQALVGLATF 20 (52)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred EEchhHHHHHHHHH
Confidence 57999888776554
No 5
>2hfn_A Synechocystis photoreceptor (SLR1694); beta sheet ferredoxin-like fold, flavin binding protein, electron transport; HET: FMN; 1.80A {Synechocystis SP} PDB: 2hfo_A* 3mzi_A*
Probab=8.37 E-value=73 Score=22.11 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=11.5
Q ss_pred cccccccCCCCccccC
Q psy11234 26 AHLSHDWQFGSIPLVT 41 (98)
Q Consensus 26 ~~Lc~DWSMg~IPlI~ 41 (98)
...--||+|+.+++=+
T Consensus 88 ~R~F~~W~M~~~~~~~ 103 (153)
T 2hfn_A 88 RRNFEVWSMQAITVND 103 (153)
T ss_dssp SCSSTTCSCEEEECST
T ss_pred CCccCCCcCeeecccc
Confidence 3344599999998653
No 6
>2iyg_A APPA, antirepressor of PPSR, sensor of blue light; signal transduction; HET: FMN; 2.3A {Rhodobacter sphaeroides} PDB: 2iyi_A*
Probab=8.26 E-value=78 Score=21.46 Aligned_cols=13 Identities=8% Similarity=0.092 Sum_probs=9.9
Q ss_pred cccccccCCCCcc
Q psy11234 26 AHLSHDWQFGSIP 38 (98)
Q Consensus 26 ~~Lc~DWSMg~IP 38 (98)
...--||+|+.++
T Consensus 98 ~R~F~~WsM~~~~ 110 (124)
T 2iyg_A 98 KRRFAGWHMQLSC 110 (124)
T ss_dssp SCSSTTCSSEEEC
T ss_pred cCccCCCcccccc
Confidence 3445699999988
No 7
>2byc_A Blue-light receptor of the BLUF-family; signaling protein, photoreceptor, flavin; HET: FMN; 1.9A {Rhodobacter sphaeroides} SCOP: d.58.10.2
Probab=7.12 E-value=79 Score=21.70 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=10.0
Q ss_pred cccccccCCCCccc
Q psy11234 26 AHLSHDWQFGSIPL 39 (98)
Q Consensus 26 ~~Lc~DWSMg~IPl 39 (98)
...--||+|+.++.
T Consensus 87 ~R~F~~W~M~~~~~ 100 (137)
T 2byc_A 87 ARRFPDWSMRIVSR 100 (137)
T ss_dssp SCSSTTCSCEEECH
T ss_pred CCcCCCCcCccccc
Confidence 34455899998874
No 8
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=6.49 E-value=1.9e+02 Score=17.77 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.0
Q ss_pred hhhhhhccccccchhccc
Q psy11234 77 SLHALAFCSIRGILNSLK 94 (98)
Q Consensus 77 ~l~~lv~PFip~~~~~~~ 94 (98)
+-++..+-|+-|++||.-
T Consensus 44 ~~lW~~LV~lvgilnsfv 61 (62)
T 3arc_Z 44 SGLWIALVLVVGVLNFFV 61 (62)
T ss_dssp HHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 677888899999999863
No 9
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=6.47 E-value=90 Score=16.71 Aligned_cols=13 Identities=8% Similarity=0.304 Sum_probs=9.6
Q ss_pred ccCcchhHHHHHH
Q psy11234 39 LVTSLGDVRNFAT 51 (98)
Q Consensus 39 lI~S~~D~Rnl~t 51 (98)
||+...|++|+..
T Consensus 12 LI~~At~~~NL~~ 24 (33)
T 1w1n_A 12 LIQQATSIERLCQ 24 (33)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHH
Confidence 5677788888764
No 10
>1yrx_A Hypothetical protein RSPH03001874; ferredoxin-like fold, flavin binding, photoreceptor, transcr; HET: FMN D9G; 2.30A {Rhodobacter sphaeroides 2} SCOP: d.58.10.2 PDB: 2bun_A*
Probab=6.41 E-value=75 Score=21.42 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=10.1
Q ss_pred cccccccCCCCccc
Q psy11234 26 AHLSHDWQFGSIPL 39 (98)
Q Consensus 26 ~~Lc~DWSMg~IPl 39 (98)
...--||+|+.++.
T Consensus 86 ~R~F~~WsM~~~~~ 99 (121)
T 1yrx_A 86 KRRFAGWHMQLSCS 99 (121)
T ss_dssp SCSCSSEEEEECCC
T ss_pred ccccCCCcccccch
Confidence 34445999999883
Done!