Query psy11234
Match_columns 98
No_of_seqs 101 out of 179
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 21:36:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11234.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11234hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 14.1 99 0.0072 17.2 3.4 12 43-54 7-18 (52)
2 d1szia_ a.24.23.1 (A:) Mannose 9.0 27 0.002 24.7 -0.5 14 77-90 212-225 (226)
3 d1x0pa1 d.58.10.2 (A:102-243) 9.0 38 0.0028 21.6 0.3 13 30-42 88-100 (142)
4 d1jqna_ c.1.12.3 (A:) Phosphoe 7.6 75 0.0054 25.9 1.6 45 31-77 493-537 (880)
5 d1ipaa1 c.116.1.1 (A:106-263) 6.8 72 0.0053 19.5 0.9 15 40-54 16-30 (158)
6 d2axtz1 f.17.5.1 (Z:1-62) Phot 6.4 1.1E+02 0.0083 17.4 1.6 17 77-93 44-60 (62)
7 d2byca1 d.58.10.2 (A:1-136) Bl 5.8 54 0.0039 20.9 -0.2 10 28-37 88-97 (136)
8 g1k3b.1 d.3.1.1 (B:,C:) Cathep 5.6 1.2E+02 0.009 18.8 1.6 33 29-61 4-37 (233)
9 d1k8ke_ a.148.1.1 (E:) Arp2/3 5.1 1.2E+02 0.0085 20.6 1.3 52 40-97 59-119 (174)
10 d1jqoa_ c.1.12.3 (A:) Phosphoe 4.4 1.1E+02 0.008 25.1 0.8 43 33-77 524-566 (936)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=14.11 E-value=99 Score=17.19 Aligned_cols=12 Identities=33% Similarity=0.124 Sum_probs=9.0
Q ss_pred chhHHHHHHHHH
Q psy11234 43 LGDVRNFATCLL 54 (98)
Q Consensus 43 ~~D~Rnl~t~~f 54 (98)
+.|||-..+..+
T Consensus 7 ~fDPRr~lva~~ 18 (52)
T d1xrda1 7 LFDPRQALVGLA 18 (52)
T ss_dssp TSSHHHHHHHHH
T ss_pred EecHHHHHHHHH
Confidence 579998877643
No 2
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.03 E-value=27 Score=24.70 Aligned_cols=14 Identities=21% Similarity=-0.119 Sum_probs=12.6
Q ss_pred hhhhhhccccccch
Q psy11234 77 SLHALAFCSIRGIL 90 (98)
Q Consensus 77 ~l~~lv~PFip~~~ 90 (98)
.+-|||.||-|++.
T Consensus 212 PL~WLVGPF~P~~~ 225 (226)
T d1szia_ 212 PAMWLVGPFAPGIT 225 (226)
T ss_dssp CTTCEEEEEEECCC
T ss_pred CcccccCCCccccc
Confidence 88999999999875
No 3
>d1x0pa1 d.58.10.2 (A:102-243) Hypothetical protein Tll0078 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.98 E-value=38 Score=21.64 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=10.1
Q ss_pred cccCCCCccccCc
Q psy11234 30 HDWQFGSIPLVTS 42 (98)
Q Consensus 30 ~DWSMg~IPlI~S 42 (98)
-||+|+.+++=+.
T Consensus 88 ~~W~M~~~~~~~~ 100 (142)
T d1x0pa1 88 INWSMRLVQLGEM 100 (142)
T ss_dssp CSCSCCEEEGGGS
T ss_pred CCCCCcceecccc
Confidence 4899999987543
No 4
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}
Probab=7.56 E-value=75 Score=25.87 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=29.4
Q ss_pred ccCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHhccCcceehhh
Q psy11234 31 DWQFGSIPLVTSLGDVRNFATCLLFVSCFCVAYKAVCDLETFSVLTS 77 (98)
Q Consensus 31 DWSMg~IPlI~S~~D~Rnl~t~~fy~~l~~l~~~~~~~~~~~~v~~~ 77 (98)
+..++=|||.|++.|-+|.-.++==.. -.-.++..-+ ..|.|++|
T Consensus 493 ~~~l~IvPLFETi~DL~~a~~il~~ll-~~p~yr~~l~-~~qeVMlG 537 (880)
T d1jqna_ 493 GFAMPVAPLFETLDDLNNANDVMTQLL-NIDWYRGLIQ-GKQMVMIG 537 (880)
T ss_dssp CSCCCEEEEECSHHHHHHHHHHHHHHH-HSHHHHHHTT-TEEEEEEC
T ss_pred CcccccchhhccHHHHHhhHHHHHHHh-cCHHHHHHhh-hhhhhhhc
Confidence 567888999999999999887753211 1123444333 45677764
No 5
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=6.82 E-value=72 Score=19.48 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=11.9
Q ss_pred cCcchhHHHHHHHHH
Q psy11234 40 VTSLGDVRNFATCLL 54 (98)
Q Consensus 40 I~S~~D~Rnl~t~~f 54 (98)
.+.+.||+|+.+++=
T Consensus 16 ld~i~dP~NlGai~R 30 (158)
T d1ipaa1 16 AVGLEKPGNLGAVLR 30 (158)
T ss_dssp EESCCCHHHHHHHHH
T ss_pred EeCCCCCchHHHHHH
Confidence 468899999988753
No 6
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.39 E-value=1.1e+02 Score=17.44 Aligned_cols=17 Identities=29% Similarity=0.299 Sum_probs=14.4
Q ss_pred hhhhhhccccccchhcc
Q psy11234 77 SLHALAFCSIRGILNSL 93 (98)
Q Consensus 77 ~l~~lv~PFip~~~~~~ 93 (98)
+.++..+-|+-|++||.
T Consensus 44 ~~~W~~LV~lvgilNsf 60 (62)
T d2axtz1 44 SGLWIALVLVVGVLNFF 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhee
Confidence 67788888999999985
No 7
>d2byca1 d.58.10.2 (A:1-136) Blue light receptor BlrB {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.84 E-value=54 Score=20.86 Aligned_cols=10 Identities=20% Similarity=0.498 Sum_probs=7.5
Q ss_pred cccccCCCCc
Q psy11234 28 LSHDWQFGSI 37 (98)
Q Consensus 28 Lc~DWSMg~I 37 (98)
.--||+|+-+
T Consensus 88 ~F~~WsM~~~ 97 (136)
T d2byca1 88 RFPDWSMRIV 97 (136)
T ss_dssp SSTTCSCEEE
T ss_pred cCCCCCCccc
Confidence 3458999875
No 8
>g1k3b.1 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase I), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.61 E-value=1.2e+02 Score=18.76 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=20.5
Q ss_pred ccccC-CCCccccCcchhHHHHHHHHHHHHHHHH
Q psy11234 29 SHDWQ-FGSIPLVTSLGDVRNFATCLLFVSCFCV 61 (98)
Q Consensus 29 c~DWS-Mg~IPlI~S~~D~Rnl~t~~fy~~l~~l 61 (98)
++||. .+....|+.+.|--.-.++-.|++..++
T Consensus 4 ~~DwR~~~~~~~vtpVkdQG~cGsCwAfA~~~~i 37 (233)
T g1k3b.1 4 SWDWRNVHGINFVSPVRNQASCGSCYSFASMGML 37 (233)
T ss_dssp CEETTCBTTBCCCCCCCBCTTSBCHHHHHHHHHH
T ss_pred CEeCCCCCCCCCcCCCcccccchHHHHHHHHHHH
Confidence 57995 3344555566676666777666665544
No 9
>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.11 E-value=1.2e+02 Score=20.55 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=28.6
Q ss_pred cCcchhHHHHHHHHHHHHHHHH-HHHHHhc----cCcceehhhhhhhhccccccc----hhccccCC
Q psy11234 40 VTSLGDVRNFATCLLFVSCFCV-AYKAVCD----LETFSVLTSLHALAFCSIRGI----LNSLKTTP 97 (98)
Q Consensus 40 I~S~~D~Rnl~t~~fy~~l~~l-~~~~~~~----~~~~~v~~~l~~lv~PFip~~----~~~~~~~~ 97 (98)
|++..|. ++.|.++.+- +.+.+.+ .++++.+.+++.-.|| |||+ +|++.+.|
T Consensus 59 ik~~aDR-----~LIYltlyiseCL~kl~~~~~~~~a~k~l~~lal~~f~-iPGd~gFpLn~~y~~P 119 (174)
T d1k8ke_ 59 IKNEADR-----TLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFP-IPGEPGFPLNAIYAKP 119 (174)
T ss_dssp CCSHHHH-----HHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHSCCC-CTTSTTCTTTTTSCCC
T ss_pred cCCccce-----eeeehHHHHHHHHHHHhcCcCHHHHHHHHHHHHhhcCC-CCCCCCCCcccccCCC
Confidence 4566663 3445444432 2333332 3466777777776665 5886 56666655
No 10
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}
Probab=4.42 E-value=1.1e+02 Score=25.08 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=27.2
Q ss_pred CCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHhccCcceehhh
Q psy11234 33 QFGSIPLVTSLGDVRNFATCLLFVSCFCVAYKAVCDLETFSVLTS 77 (98)
Q Consensus 33 SMg~IPlI~S~~D~Rnl~t~~fy~~l~~l~~~~~~~~~~~~v~~~ 77 (98)
.++-|||.|++.|-||.-.++==.. -.-.++.-.+ +.|.|++|
T Consensus 524 ~l~VvPLFETi~DL~~a~~il~~Ll-~~p~yr~~l~-~~QeVMlG 566 (936)
T d1jqoa_ 524 PLPVVPLFERLADLQSAPASVERLF-SVDWYMDRIK-GKQQVMVG 566 (936)
T ss_dssp CCCEEEEECSHHHHHTHHHHHHHHH-TCHHHHHHHT-SEEEEEEE
T ss_pred CCCcccccccHHHHHhhHHHHHHHH-hChHHHHhhc-cceEEEec
Confidence 5888999999999999877643211 1123333322 45777764
Done!