RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11234
         (98 letters)



>gnl|CDD|149463 pfam08409, DUF1736, Domain of unknown function (DUF1736).  This
          domain of unknown function is found in various
          hypothetical metazoan proteins.
          Length = 80

 Score = 70.7 bits (174), Expect = 6e-18
 Identities = 25/52 (48%), Positives = 31/52 (59%)

Query: 7  RLLTFCYLAVFNVWLLLCPAHLSHDWQFGSIPLVTSLGDVRNFATCLLFVSC 58
          R LT+ YL   N+WLLLCP  L  DW  G IPL+ S+ D RN  T L + + 
Sbjct: 25 RTLTYLYLPAVNLWLLLCPDWLCFDWSMGCIPLIESIWDPRNLLTLLFYSAL 76


>gnl|CDD|238889 cd01908, YafJ, Glutamine amidotransferases class-II
          (Gn-AT)_YafJ-type.  YafJ is a glutamine
          amidotransferase-like protein of unknown function found
          in prokaryotes, eukaryotes and archaea.  YafJ has a
          conserved structural fold similar to those of other
          class II glutamine amidotransferases including
          lucosamine-fructose 6-phosphate synthase (GLMS or
          GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
          amidotransferase (GPATase),  asparagine synthetase B
          (AsnB), beta lactam synthetase (beta-LS) and glutamate
          synthase (GltS).  The YafJ fold is also somwhat similar
          to the Ntn (N-terminal nucleophile) hydrolase fold of
          the proteasomal alpha and beta subunits.
          Length = 257

 Score = 25.8 bits (57), Expect = 4.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 6  CRLLTFCYLAVFNVWLLLCPAH 27
          CRLL +    +    LL+ P+H
Sbjct: 2  CRLLGYSGAPIPLEPLLIRPSH 23


>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
           ASL).  This subgroup contains EcASL, the product of the
           purB gene in Escherichia coli, and related proteins. It
           is a member of the Lyase class I family of the Lyase_I
           superfamily. Members of the Lyase class I family
           function as homotetramers to catalyze similar
           beta-elimination reactions in which a Calpha-N or
           Calpha-O bond is cleaved with the subsequent release of
           fumarate as one of the products. The four active sites
           of the homotetrameric enzyme are each formed by residues
           from three different subunits. ASL catalyzes two
           non-sequential steps in the de novo purine biosynthesis
           pathway: the conversion of
           5-aminoimidazole-(N-succinylocarboxamide) ribotide
           (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
           (AICAR) and; the conversion of adenylsuccinate (SAMP)
           into adenosine monophosphate (AMP).
          Length = 425

 Score = 25.7 bits (57), Expect = 4.6
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 4/30 (13%)

Query: 26  AHL----SHDWQFGSIPLVTSLGDVRNFAT 51
           AHL      DW+  S   VTSLG   N  T
Sbjct: 194 AHLVAYPDVDWRKFSEFFVTSLGLTWNPYT 223


>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
          Length = 580

 Score = 25.9 bits (57), Expect = 4.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 7   RLLTFCYLAVFNVWLLL 23
           + L + Y AV+  WLLL
Sbjct: 436 KELNWAYHAVYCAWLLL 452


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.334    0.142    0.488 

Gapped
Lambda     K      H
   0.267   0.0829    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,665,277
Number of extensions: 359893
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 16
Length of query: 98
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 34
Effective length of database: 8,098,946
Effective search space: 275364164
Effective search space used: 275364164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.0 bits)