RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11234
         (98 letters)



>d1f3ua_ b.65.1.1 (A:) TFIIF beta subunit, Rap30 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 118

 Score = 28.3 bits (63), Expect = 0.093
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 18 NVWLLLCPAHLSHDWQFGSIPLVTSLGDVR 47
           VWL+  P +LS  W          +G +R
Sbjct: 16 GVWLVKVPKYLSQQWA--KASGRGEVGKLR 43


>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 185

 Score = 23.2 bits (50), Expect = 7.4
 Identities = 9/25 (36%), Positives = 9/25 (36%), Gaps = 1/25 (4%)

Query: 11  FCYLAVFNVWLLLCPAHLSHDWQFG 35
           F Y   F  W L  P     DW  G
Sbjct: 80  FNYTKEFFNWALKSPGWK-KDWHIG 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.142    0.488 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 351,230
Number of extensions: 12730
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 4
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.0 bits)