BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11239
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|D Chain D, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|F Chain F, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|H Chain H, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|J Chain J, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|L Chain L, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
Length = 385
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 146/207 (70%), Gaps = 4/207 (1%)
Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
GRPTP+YY K ++ + G+KI+LKREDL GAHK NN+I Q+LLAKF+ K R+I ETGA
Sbjct: 48 GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGA 107
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
G HGV+TA + LL ++ IY+G D +RQ +NV ++KLLG V V G+ LK+A+NE
Sbjct: 108 GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINE 167
Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
A++DW +HYLIG+ GPHPYPTIVRDFQS+IG E Q L I+ACVG
Sbjct: 168 ALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVG 227
Query: 373 GGSNALGIFYTFINS-NFKLVAIESGG 398
GGSNA+GIFY F+N KLV +E+GG
Sbjct: 228 GGSNAMGIFYPFVNDKKVKLVGVEAGG 254
Score = 211 bits (536), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 132/187 (70%), Gaps = 3/187 (1%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPTP+YY K ++ + G+KI+LKREDL GAHK NN+I Q+LLAKF+ K R+I ETGA
Sbjct: 48 GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGA 107
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV+TA + LL ++ IY+G D +RQ +NV ++KLLG V V G+ LK+A+NE
Sbjct: 108 GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINE 167
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 189
A++DW +HYLIG+ GPHPYPTIVRDFQS+IG E Q L I+ACVG
Sbjct: 168 ALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVG 227
Query: 190 GGSNALG 196
GGSNA+G
Sbjct: 228 GGSNAMG 234
>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|B Chain B, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|C Chain C, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|D Chain D, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
Length = 388
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 146/207 (70%), Gaps = 4/207 (1%)
Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
GRPTP+YY K ++ + G+KI+LKREDL GAHK NN+I Q+LLAKF+ K R+I ETGA
Sbjct: 48 GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGA 107
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
G HGV+TA + LL ++ IY+G D +RQ +NV ++KLLG V V G+ LK+A+NE
Sbjct: 108 GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINE 167
Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 372
A++DW +HYLIG+ GPHPYPTIVRDFQS+IG E Q L I+ACVG
Sbjct: 168 ALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVG 227
Query: 373 GGSNALGIFYTFINS-NFKLVAIESGG 398
GGSNA+GIFY F+N KLV +E+GG
Sbjct: 228 GGSNAMGIFYPFVNDKKVKLVGVEAGG 254
Score = 211 bits (536), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 103/187 (55%), Positives = 132/187 (70%), Gaps = 3/187 (1%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPTP+YY K ++ + G+KI+LKREDL GAHK NN+I Q+LLAKF+ K R+I ETGA
Sbjct: 48 GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGA 107
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV+TA + LL ++ IY+G D +RQ +NV ++KLLG V V G+ LK+A+NE
Sbjct: 108 GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINE 167
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 189
A++DW +HYLIG+ GPHPYPTIVRDFQS+IG E Q L I+ACVG
Sbjct: 168 ALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVG 227
Query: 190 GGSNALG 196
GGSNA+G
Sbjct: 228 GGSNAMG 234
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2E|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2J|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
pdb|2O2J|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
Length = 422
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 146/211 (69%), Gaps = 4/211 (1%)
Query: 192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIIC 251
+N GRP+P+Y +S ++IFLKREDLN TG+HK+NN + Q+LLA+ + K R+I
Sbjct: 75 ANYAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIA 134
Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKE 309
ETGAG HGV+TAT+C LL L+ +IY+G D RQ +NV +++LLG V VQ G+ LK+
Sbjct: 135 ETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKD 194
Query: 310 AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN-KKYIL 368
A+NEA +DW N N++Y GTA+GPHP+PT+VRDFQ IIG E Q+ ++
Sbjct: 195 AINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVV 254
Query: 369 ACVGGGSNALGIFYTFINS-NFKLVAIESGG 398
ACVGGGSNA+GIF+ F++ +LV E+ G
Sbjct: 255 ACVGGGSNAIGIFHAFLDDPGVRLVGFEAAG 285
Score = 210 bits (535), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 132/187 (70%), Gaps = 3/187 (1%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRP+P+Y +S ++IFLKREDLN TG+HK+NN + Q+LLA+ + K R+I ETGA
Sbjct: 79 GRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAETGA 138
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV+TAT+C LL L+ +IY+G D RQ +NV +++LLG V VQ G+ LK+A+NE
Sbjct: 139 GQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAINE 198
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN-KKYILACVG 189
A +DW N N++Y GTA+GPHP+PT+VRDFQ IIG E Q+ ++ACVG
Sbjct: 199 AFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVG 258
Query: 190 GGSNALG 196
GGSNA+G
Sbjct: 259 GGSNAIG 265
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
pdb|1X1Q|B Chain B, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
Length = 418
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/220 (47%), Positives = 146/220 (66%), Gaps = 10/220 (4%)
Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
GRPTP+Y+ K +S G+++FLKREDL TGAHK+NN++ Q+LLA+ K+R+I ETGA
Sbjct: 75 GRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARRXGKRRVIAETGA 134
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
G HGVS AT L LE ++Y GE D +RQ +NV + KLLG V V G+ LK+A NE
Sbjct: 135 GQHGVSVATVAALFGLECVVYXGEEDVRRQALNVFRXKLLGAEVRPVAAGSRTLKDATNE 194
Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK--KYILACV 371
AI+DW N+ + Y++G+ GPHPYP VRDFQS+IG E+ +Q + + + ++A V
Sbjct: 195 AIRDWITNVRTTFYILGSVVGPHPYPXXVRDFQSVIGEEVKRQ-SLELFGRLPDALIAAV 253
Query: 372 GGGSNALGIFYTFI---NSNFKLVAIESG--GISKKRTAS 406
GGGSNA+G+F F KL+ +E+ G+S R A+
Sbjct: 254 GGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAA 293
Score = 211 bits (537), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 137/210 (65%), Gaps = 5/210 (2%)
Query: 1 MEWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF 60
+E D + GRPTP+Y+ K +S G+++FLKREDL TGAHK+NN++ Q+LLA+
Sbjct: 63 LEELDHYLRQFAGRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARR 122
Query: 61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120
K+R+I ETGAG HGVS AT L LE ++Y GE D +RQ +NV + KLLG V V
Sbjct: 123 XGKRRVIAETGAGQHGVSVATVAALFGLECVVYXGEEDVRRQALNVFRXKLLGAEVRPVA 182
Query: 121 YGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNF 178
G+ LK+A NEAI+DW N+ + Y++G+ GPHPYP VRDFQS+IG E+ +Q +
Sbjct: 183 AGSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPXXVRDFQSVIGEEVKRQ-SLEL 241
Query: 179 YNK--KYILACVGGGSNALGRPTPIYYCKN 206
+ + ++A VGGGSNA+G P Y
Sbjct: 242 FGRLPDALIAAVGGGSNAIGLFAPFAYLPE 271
>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium
pdb|1KFC|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Propanol Phosphate
pdb|1KFJ|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With L-Serine
pdb|1KFK|B Chain B, Crystal Structure Of Tryptophan Synthase From Salmonella
Typhimurium
pdb|2RH9|B Chain B, Tryptophan Synthase Complexed With Igp, Internal Aldimine,
Ph 9.0
pdb|2RHG|B Chain B, Tryptophan Synthase Complexed With Igp, Ph 7.0, Internal
Aldimine
Length = 397
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 51 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 133/198 (67%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 44 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 101
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 102 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 161
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 162 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 221
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 222 RLPDAVIACVGGGSNAIG 239
>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7E|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1KFB|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Glycerol Phosphate
pdb|1TJP|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 1-
[(2-Hydroxylphenyl)amino]3-Glycerolphosphate
pdb|1WBJ|B Chain B, Wildtype Tryptophan Synthase Complexed With Glycerol
Phosphate
pdb|2CLI|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2CLK|B Chain B, Tryptophan Synthase In Complex With D-Glyceraldehyde 3-
Phosphate (G3p)
pdb|2CLL|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2J9X|B Chain B, Tryptophan Synthase In Complex With Gp,
Alpha-D,L-Glycerol- Phosphate, Cs, Ph6.5 - Alpha
Aminoacrylate Form - (Gp)e(A- A)
pdb|3CEP|B Chain B, Structure Of A Tryptophan Synthase Quinonoid Intermediate
Length = 396
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 50 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 169 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 133/198 (67%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 43 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 100
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 101 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 161 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 220
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 221 RLPDAVIACVGGGSNAIG 238
>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9
Inhibitor In Alpha Site
Length = 391
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 49 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 107
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 108 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 167
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 168 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 227
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 228 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 257
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 133/198 (67%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 42 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 99
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 100 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 159
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 160 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 219
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 220 RLPDAVIACVGGGSNAIG 237
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With L-ser Bound To
The Beta Site
Length = 394
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 50 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 169 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 133/198 (67%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 43 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 100
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 101 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 161 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 220
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 221 RLPDAVIACVGGGSNAIG 238
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
pdb|2CLE|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6)-
Lowf6 Complex
pdb|2CLH|B Chain B, Tryptophan Synthase In Complex With (Naphthalene-2'-
Sulfonyl)-2-Amino-1-Ethylphosphate (F19)
pdb|2CLM|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1-
Ethylphosphate (F6f)
pdb|2CLO|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With (Naphthalene-2'-Sulfonyl)-2-Amino-1-Ethylphosphate
(F19)
pdb|2CLF|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6) -
Highf6 Complex
Length = 396
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 50 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 169 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 133/198 (67%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 43 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 100
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 101 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 161 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 220
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 221 RLPDAVIACVGGGSNAIG 238
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxy-4- Fluorophenylthio)-Butylphosphonic Acid
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylsulfinyl)- Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Aminophenylthio)- Butylphosphonic Acid
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)-1- Butenylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)- Butylphosphonic Acid
Length = 397
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 51 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 133/198 (67%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 44 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 101
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 102 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 161
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 162 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 221
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 222 RLPDAVIACVGGGSNAIG 239
>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+
Length = 397
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 51 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 133/198 (67%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 44 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 101
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 102 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 161
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 162 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 221
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 222 RLPDAVIACVGGGSNAIG 239
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb
pdb|2DH6|A Chain A, Crystal Structure Of E. Coli Apo-trpb
Length = 397
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 140/210 (66%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 51 NYAGRPTALTKCQNITAGTN-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILEREGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN +N L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINETNVGLIGVEPGG 259
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 131/198 (66%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 44 QFNDLLKN-YAGRPTALTKCQNITAGTN-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 101
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 102 GKTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 161
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L
Sbjct: 162 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILEREG 221
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 222 RLPDAVIACVGGGSNAIG 239
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 50 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA+ DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 169 CNEALADWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 132/198 (66%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 43 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 100
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 101 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA+ DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 161 GSATLKDACNEALADWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 220
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 221 RLPDAVIACVGGGSNAIG 238
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound
Ii
Length = 397
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 142/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 51 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 110 TGAGNHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 133/198 (67%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 44 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 101
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 102 GKSEIIAETGAGNHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 161
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 162 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 221
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 222 RLPDAVIACVGGGSNAIG 239
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
Length = 396
Score = 198 bits (503), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 50 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DW + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 169 CNEALRDWPGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258
Score = 184 bits (467), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 132/198 (66%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 43 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 100
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 101 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DW + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 161 GSATLKDACNEALRDWPGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 220
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 221 RLPDAVIACVGGGSNAIG 238
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAH N + Q+LLAK + K II E
Sbjct: 51 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHTTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 132/198 (66%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAH N + Q+LLAK +
Sbjct: 44 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHTTNQVLGQALLAKRM 101
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 102 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 161
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 162 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 221
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 222 RLPDAVIACVGGGSNAIG 239
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TRS|B Chain B, Crystal Structures Of Mutant (betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-induced Conformational Changes
pdb|2TSY|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAH N + Q+LLAK + K II E
Sbjct: 51 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHTTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 110 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 132/198 (66%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAH N + Q+LLAK +
Sbjct: 44 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHTTNQVLGQALLAKRM 101
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 102 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 161
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 162 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 221
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 222 RLPDAVIACVGGGSNAIG 239
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
TRYPTOPHAN Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
Length = 396
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 50 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 108
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+
Sbjct: 109 TGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDL 168
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 169 WNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 228
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 229 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 258
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 132/198 (66%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 43 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 100
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 101 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+ NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 161 GSATLKDLWNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 220
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 221 RLPDAVIACVGGGSNAIG 238
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex
Length = 397
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK + K II E
Sbjct: 51 NYAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAE 109
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
GAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A
Sbjct: 110 VGAGNHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDA 169
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+ ++A
Sbjct: 170 CNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIA 229
Query: 370 CVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
CVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 230 CVGGGSNAIGMFADFINDTSVGLIGVEPGG 259
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 132/198 (66%), Gaps = 5/198 (2%)
Query: 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL 61
++ DL N GRPT + C+NI+ + + ++LKREDL GAHK N + Q+LLAK +
Sbjct: 44 QFADLLKN-YAGRPTALTKCQNITAGTR-TTLYLKREDLLHGGAHKTNQVLGQALLAKRM 101
Query: 62 KKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121
K II E GAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V
Sbjct: 102 GKSEIIAEVGAGNHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 161
Query: 122 GN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNF 178
G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q L+
Sbjct: 162 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEG 221
Query: 179 YNKKYILACVGGGSNALG 196
++ACVGGGSNA+G
Sbjct: 222 RLPDAVIACVGGGSNAIG 239
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 16 TPIYYCKNISNILKGSK--------IFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRI- 66
P+Y ++ + K K I +KRED + K+ + A ++A ++++
Sbjct: 23 APVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYA--MMAGLTEEQKAH 80
Query: 67 -ICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLK 125
+ AG H A S L ++++I + +I V ++ GG V L+ N
Sbjct: 81 GVITASAGNHAQGVAFSSARLGVKALIVM---PTATADIKVDAVRGFGGEV-LLHGANFD 136
Query: 126 EAMNEAIK 133
EA +AI+
Sbjct: 137 EAKAKAIE 144
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 199 TPIYYCKNISNILKGSK--------IFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRI- 249
P+Y ++ + K K I +KRED + K+ + A ++A ++++
Sbjct: 23 APVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYA--MMAGLTEEQKAH 80
Query: 250 -ICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLK 308
+ AG H A S L ++++I + +I V ++ GG V L+ N
Sbjct: 81 GVITASAGNHAQGVAFSSARLGVKALIVM---PTATADIKVDAVRGFGGEV-LLHGANFD 136
Query: 309 EAMNEAIK 316
EA +AI+
Sbjct: 137 EAKAKAIE 144
>pdb|1J0A|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0B|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|D Chain D, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|E Chain E, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|F Chain F, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|G Chain G, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|H Chain H, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|I Chain I, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|J Chain J, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|K Chain K, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|L Chain L, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|M Chain M, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|N Chain N, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|O Chain O, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|P Chain P, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|Q Chain Q, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|R Chain R, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|S Chain S, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|T Chain T, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|U Chain U, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|V Chain V, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|W Chain W, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|X Chain X, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
Length = 325
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 23/209 (11%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-KRIICETGA-- 255
TPI Y NIS + G+ +++KR+DL G + LL L K ++ GA
Sbjct: 22 TPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVH 80
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY-------LVQYGNLK 308
H T + L L++I+ + + + N + KI + VY L++Y
Sbjct: 81 SNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYA--- 137
Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
E + E +K Y+I G P T+ + +G EI Q F + +
Sbjct: 138 EEIAEELKREGRK----PYVI-PPGGASPIGTL--GYVRAVG-EIATQSEVKF-DSIVVA 188
Query: 369 ACVGGGSNALGIFYTFINSNFKLVAIESG 397
A GG L + + +N + + V I G
Sbjct: 189 AGSGGTLAGLSLGLSILNEDIRPVGIAVG 217
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-KRIICETGA-- 72
TPI Y NIS + G+ +++KR+DL G + LL L K ++ GA
Sbjct: 22 TPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVVITVGAVH 80
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKI 109
H T + L L++I+ + + + N + KI
Sbjct: 81 SNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKI 117
>pdb|1QQW|A Chain A, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|B Chain B, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|C Chain C, Crystal Structure Of Human Erythrocyte Catalase
pdb|1QQW|D Chain D, Crystal Structure Of Human Erythrocyte Catalase
pdb|1F4J|A Chain A, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|B Chain B, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|C Chain C, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
pdb|1F4J|D Chain D, Structure Of Tetragonal Crystals Of Human Erythrocyte
Catalase
Length = 527
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 21 CKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLAKFLKKK 64
C+NI+ LK ++IF++++ + NFT H S Q+LL K+ +K
Sbjct: 460 CENIAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQALLDKYNAEK 504
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 204 CKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLAKFLKKK 247
C+NI+ LK ++IF++++ + NFT H S Q+LL K+ +K
Sbjct: 460 CENIAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQALLDKYNAEK 504
>pdb|1DGG|A Chain A, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|B Chain B, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|C Chain C, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGG|D Chain D, Human Erythrocyte Catalse Cyanide Complex
pdb|1DGF|A Chain A, Human Erythrocyte Catalase
pdb|1DGF|B Chain B, Human Erythrocyte Catalase
pdb|1DGF|C Chain C, Human Erythrocyte Catalase
pdb|1DGF|D Chain D, Human Erythrocyte Catalase
Length = 497
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 21 CKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLAKF 60
C+NI+ LK ++IF++++ + NFT H S Q+LL K+
Sbjct: 456 CENIAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQALLDKY 496
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 204 CKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLAKF 243
C+NI+ LK ++IF++++ + NFT H S Q+LL K+
Sbjct: 456 CENIAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQALLDKY 496
>pdb|1DGH|A Chain A, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGH|C Chain C, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGB|A Chain A, Human Erythrocyte Catalase
pdb|1DGB|B Chain B, Human Erythrocyte Catalase
pdb|1DGB|C Chain C, Human Erythrocyte Catalase
pdb|1DGB|D Chain D, Human Erythrocyte Catalase
Length = 498
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 21 CKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLAKF 60
C+NI+ LK ++IF++++ + NFT H S Q+LL K+
Sbjct: 457 CENIAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQALLDKY 497
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 204 CKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLAKF 243
C+NI+ LK ++IF++++ + NFT H S Q+LL K+
Sbjct: 457 CENIAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQALLDKY 497
>pdb|1DGH|B Chain B, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
pdb|1DGH|D Chain D, Human Erythrocyte Catalase 3-Amino-1,2,4-Triazole Complex
Length = 498
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 21 CKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLAKF 60
C+NI+ LK ++IF++++ + NFT H S Q+LL K+
Sbjct: 457 CENIAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQALLDKY 497
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 204 CKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLAKF 243
C+NI+ LK ++IF++++ + NFT H S Q+LL K+
Sbjct: 457 CENIAGHLKDAQIFIQKKAVKNFTEVHPDYGSHIQALLDKY 497
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 4 FDLFYNPKKGRPTPIYYCKNISNILKGSK-----IFLKREDLNFTGAHKMNNSIAQSLLA 58
DL+ N + P+YY K + + +K + IF + + + G S L
Sbjct: 118 LDLYANVR-----PVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLI 172
Query: 59 KFLKKK---RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGT 115
+FLK + I ++G G+ +S + L+ + +I Y EN+ K +
Sbjct: 173 RFLKNEFGVTIREDSGIGIKPISEFATKRLVRM-AIRYAIENNRK--------------S 217
Query: 116 VYLVQYGNLKEAMNEAIKDWSNNILNSHY 144
V LV GN+ + A +DW + +
Sbjct: 218 VTLVHKGNIMKYTEGAFRDWGYEVAKQEF 246
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 23/136 (16%)
Query: 200 PIYYCKNISNILKGSK-----IFLKREDLNFTGAHKMNNSIAQSLLAKFLKKK---RIIC 251
P+YY K + + +K + IF + + + G S L +FLK + I
Sbjct: 126 PVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLKNEFGVTIRE 185
Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAM 311
++G G+ +S + L+ + +I Y EN+ K +V LV GN+ +
Sbjct: 186 DSGIGIKPISEFATKRLVRM-AIRYAIENNRK--------------SVTLVHKGNIMKYT 230
Query: 312 NEAIKDWSNNILNSHY 327
A +DW + +
Sbjct: 231 EGAFRDWGYEVAKQEF 246
>pdb|4D97|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
Length = 346
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLN 224
+G PTP+ Y +S+ L G +I++KR+D+
Sbjct: 29 IGAPTPLEYLPRLSDYL-GREIYIKRDDVT 57
>pdb|4D96|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D9B|A Chain A, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|B Chain B, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|C Chain C, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|D Chain D, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9C|A Chain A, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|B Chain B, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|C Chain C, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|D Chain D, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9E|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9F|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
Length = 342
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLN 224
+G PTP+ Y +S+ L G +I++KR+D+
Sbjct: 29 IGAPTPLEYLPRLSDYL-GREIYIKRDDVT 57
>pdb|4D8T|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8U|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|E Chain E, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|F Chain F, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|G Chain G, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|H Chain H, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8W|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D92|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D99|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
Length = 342
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLN 224
+G PTP+ Y +S+ L G +I++KR+D+
Sbjct: 29 IGAPTPLEYLPRLSDYL-GREIYIKRDDVT 57
>pdb|1TI2|B Chain B, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|D Chain D, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|F Chain F, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|H Chain H, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|J Chain J, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI2|L Chain L, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1TI4|B Chain B, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|D Chain D, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|F Chain F, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|H Chain H, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|J Chain J, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI4|L Chain L, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1TI6|B Chain B, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|D Chain D, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|F Chain F, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|H Chain H, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|J Chain J, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1TI6|L Chain L, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLD|N Chain N, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|P Chain P, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|R Chain R, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|T Chain T, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|V Chain V, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLD|X Chain X, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici
pdb|1VLE|N Chain N, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|P Chain P, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|R Chain R, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|T Chain T, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|V Chain V, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLE|X Chain X, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Pyrogallol
pdb|1VLF|N Chain N, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|P Chain P, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|R Chain R, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|T Chain T, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|V Chain V, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
pdb|1VLF|X Chain X, Crystal Structure Of Pyrogallol-Phloroglucinol
Transhydroxylase From Pelobacter Acidigallici Complexed
With Inhibitor 1,2,4,5-Tetrahydroxy-Benzene
Length = 274
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKRED 39
RPTP +C+N + KG+ +RED
Sbjct: 64 RPTPCMHCENAPCVAKGNGAVYQRED 89
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKRED 222
RPTP +C+N + KG+ +RED
Sbjct: 64 RPTPCMHCENAPCVAKGNGAVYQRED 89
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 26/114 (22%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI--AQSLLAKFLKKK-RIICETGA 72
TP+ +I N L G +F K E TG+ K+ ++ +SL+ L++K + + +
Sbjct: 26 TPVL-TSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSS 84
Query: 73 GMHGVS------------------TATSCCLLNLE----SIIYIGENDYKRQNI 104
G HG + TA C L ++ SI+Y +D R+N+
Sbjct: 85 GNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENV 138
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 26/114 (22%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI--AQSLLAKFLKKK-RIICETGA 255
TP+ +I N L G +F K E TG+ K+ ++ +SL+ L++K + + +
Sbjct: 26 TPVL-TSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSS 84
Query: 256 GMHGVS------------------TATSCCLLNLE----SIIYIGENDYKRQNI 287
G HG + TA C L ++ SI+Y +D R+N+
Sbjct: 85 GNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENV 138
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 11 KKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQ-SLLAKFLKKKRIICE 69
K G P Y+ S KG +IFLK E++ TG+ + + + S L + K+K ++
Sbjct: 40 KTGMPRSNYF----SERCKG-EIFLKFENMQRTGSFXIRGAFNKLSSLTEAEKRKGVVA- 93
Query: 70 TGAGMHGVSTATSCCLLNLE 89
AG H + SC +L ++
Sbjct: 94 CSAGNHAQGVSLSCAMLGID 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,540,386
Number of Sequences: 62578
Number of extensions: 535042
Number of successful extensions: 1392
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1235
Number of HSP's gapped (non-prelim): 63
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)