Query psy11239
Match_columns 410
No_of_seqs 268 out of 2565
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 21:41:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04346 tryptophan synthase s 100.0 6.7E-43 1.5E-47 345.9 24.0 210 195-404 55-268 (397)
2 PRK13028 tryptophan synthase s 100.0 4.8E-41 1E-45 333.2 24.6 204 195-398 59-266 (402)
3 PLN02618 tryptophan synthase, 100.0 8.1E-41 1.7E-45 331.6 24.3 210 195-404 63-281 (410)
4 PRK04346 tryptophan synthase s 100.0 2.3E-41 4.9E-46 335.0 16.3 210 2-218 45-257 (397)
5 COG0133 TrpB Tryptophan syntha 100.0 3.2E-40 6.9E-45 304.9 18.2 212 195-407 53-268 (396)
6 PRK13802 bifunctional indole-3 100.0 9.8E-39 2.1E-43 332.9 28.7 211 195-405 323-543 (695)
7 PLN02618 tryptophan synthase, 100.0 4.9E-40 1.1E-44 326.0 15.7 210 2-218 53-270 (410)
8 PRK13028 tryptophan synthase s 100.0 5.5E-40 1.2E-44 325.6 15.8 210 2-218 49-261 (402)
9 COG1171 IlvA Threonine dehydra 100.0 2.5E-39 5.4E-44 309.6 17.6 187 197-401 24-215 (347)
10 TIGR00263 trpB tryptophan synt 100.0 1.3E-38 2.9E-43 317.0 23.4 207 195-401 47-257 (385)
11 COG0031 CysK Cysteine synthase 100.0 7.6E-39 1.6E-43 301.1 20.4 245 12-279 8-292 (300)
12 PRK13803 bifunctional phosphor 100.0 2.5E-38 5.5E-43 330.6 23.8 206 195-401 268-477 (610)
13 COG1171 IlvA Threonine dehydra 100.0 1.9E-38 4.1E-43 303.6 18.6 252 12-320 22-276 (347)
14 COG0031 CysK Cysteine synthase 100.0 8E-38 1.7E-42 294.2 21.6 195 198-404 11-212 (300)
15 cd06446 Trp-synth_B Tryptophan 100.0 1.6E-37 3.6E-42 307.7 23.4 208 196-403 32-243 (365)
16 PRK13802 bifunctional indole-3 100.0 2.9E-38 6.4E-43 329.4 16.7 202 2-203 313-523 (695)
17 PRK11761 cysM cysteine synthas 100.0 4.3E-37 9.2E-42 296.4 22.0 191 198-404 12-210 (296)
18 PRK08526 threonine dehydratase 100.0 2.2E-37 4.8E-42 309.3 20.4 187 197-402 19-209 (403)
19 PLN03013 cysteine synthase 100.0 6.7E-37 1.4E-41 303.7 22.9 190 198-402 123-321 (429)
20 TIGR00263 trpB tryptophan synt 100.0 1.1E-37 2.5E-42 310.3 16.6 209 3-218 38-249 (385)
21 PRK12483 threonine dehydratase 100.0 4.2E-37 9.1E-42 314.0 20.9 188 197-402 36-227 (521)
22 KOG1250|consensus 100.0 1.9E-37 4.1E-42 294.1 16.5 188 197-403 65-257 (457)
23 TIGR01127 ilvA_1Cterm threonin 100.0 3.9E-37 8.4E-42 307.4 19.5 186 199-402 1-189 (380)
24 PLN02565 cysteine synthase 100.0 1.3E-36 2.9E-41 295.8 22.7 190 198-402 15-213 (322)
25 TIGR01138 cysM cysteine syntha 100.0 1E-36 2.2E-41 293.1 21.5 191 198-404 8-206 (290)
26 COG0133 TrpB Tryptophan syntha 100.0 1.5E-37 3.2E-42 287.2 14.5 202 2-204 43-247 (396)
27 PRK07476 eutB threonine dehydr 100.0 5.1E-37 1.1E-41 299.6 19.1 186 198-400 19-206 (322)
28 PLN02970 serine racemase 100.0 7.5E-37 1.6E-41 298.9 20.2 187 198-402 27-216 (328)
29 PRK08198 threonine dehydratase 100.0 8.9E-37 1.9E-41 307.0 19.6 188 197-402 21-211 (404)
30 PRK06382 threonine dehydratase 100.0 1.3E-36 2.9E-41 305.2 19.8 186 198-402 25-214 (406)
31 PLN02550 threonine dehydratase 100.0 2E-36 4.3E-41 310.6 21.1 188 197-402 108-299 (591)
32 PRK06110 hypothetical protein; 100.0 1.8E-36 3.9E-41 295.8 19.7 188 197-402 20-210 (322)
33 PRK08638 threonine dehydratase 100.0 2.1E-36 4.6E-41 295.6 19.7 185 197-400 26-214 (333)
34 PRK11761 cysM cysteine synthas 100.0 2.8E-36 6E-41 290.7 19.8 181 5-203 4-190 (296)
35 PRK08526 threonine dehydratase 100.0 6.2E-37 1.4E-41 306.0 15.7 173 12-203 17-191 (403)
36 TIGR01136 cysKM cysteine synth 100.0 6.2E-36 1.3E-40 289.4 22.1 191 198-403 7-205 (299)
37 PLN02556 cysteine synthase/L-3 100.0 5.4E-36 1.2E-40 295.7 22.0 190 198-402 59-257 (368)
38 cd06446 Trp-synth_B Tryptophan 100.0 1E-36 2.2E-41 302.1 16.8 210 2-218 21-233 (365)
39 PRK13803 bifunctional phosphor 100.0 6.7E-37 1.5E-41 319.9 16.2 209 2-218 258-469 (610)
40 TIGR02079 THD1 threonine dehyd 100.0 2.6E-36 5.6E-41 302.9 19.6 189 197-402 15-209 (409)
41 PLN02565 cysteine synthase 100.0 4.4E-36 9.5E-41 292.1 20.6 178 12-204 12-196 (322)
42 PRK08639 threonine dehydratase 100.0 2.3E-36 5.1E-41 304.6 19.2 191 197-402 24-220 (420)
43 PRK08813 threonine dehydratase 100.0 6.3E-36 1.4E-40 291.8 21.3 179 197-401 38-217 (349)
44 PLN02550 threonine dehydratase 100.0 5.5E-36 1.2E-40 307.4 21.8 191 4-218 95-290 (591)
45 cd06448 L-Ser-dehyd Serine deh 100.0 4.1E-36 8.9E-41 292.1 19.8 194 198-403 1-199 (316)
46 PRK07476 eutB threonine dehydr 100.0 1.3E-36 2.9E-41 296.7 16.4 189 5-219 11-200 (322)
47 TIGR01139 cysK cysteine syntha 100.0 8.3E-36 1.8E-40 288.4 21.8 193 198-403 7-205 (298)
48 PRK08638 threonine dehydratase 100.0 1.4E-36 3.1E-41 296.8 16.6 189 12-228 24-213 (333)
49 PRK08197 threonine synthase; V 100.0 2.9E-35 6.4E-40 294.6 26.0 190 13-218 77-268 (394)
50 TIGR01138 cysM cysteine syntha 100.0 8.5E-36 1.9E-40 286.6 21.1 176 12-203 5-186 (290)
51 TIGR01124 ilvA_2Cterm threonin 100.0 5.2E-36 1.1E-40 306.2 20.7 188 197-402 16-207 (499)
52 PLN02970 serine racemase 100.0 2.2E-36 4.7E-41 295.7 17.2 183 12-218 24-207 (328)
53 PRK07048 serine/threonine dehy 100.0 6.7E-36 1.4E-40 291.9 20.1 184 198-400 24-211 (321)
54 TIGR02991 ectoine_eutB ectoine 100.0 9.7E-36 2.1E-40 289.6 20.9 187 197-402 18-208 (317)
55 PLN00011 cysteine synthase 100.0 2E-35 4.2E-40 288.3 22.7 191 198-402 17-215 (323)
56 PLN03013 cysteine synthase 100.0 2.6E-36 5.7E-41 299.5 16.7 186 12-218 120-312 (429)
57 PRK07591 threonine synthase; V 100.0 4.6E-35 1E-39 294.8 25.7 193 12-218 86-279 (421)
58 cd06447 D-Ser-dehyd D-Serine d 100.0 1.3E-35 2.8E-40 294.7 21.2 193 197-401 51-285 (404)
59 PRK12483 threonine dehydratase 100.0 2.2E-36 4.7E-41 308.8 15.8 173 12-202 34-208 (521)
60 PRK08198 threonine dehydratase 100.0 2.4E-36 5.2E-41 303.9 15.9 174 12-203 19-193 (404)
61 PRK06352 threonine synthase; V 100.0 1E-35 2.3E-40 293.1 19.9 187 198-401 28-221 (351)
62 PRK06381 threonine synthase; V 100.0 1.9E-35 4.2E-40 288.5 21.6 189 198-400 15-211 (319)
63 PRK10717 cysteine synthase A; 100.0 2.9E-35 6.2E-40 288.5 22.4 191 198-402 13-217 (330)
64 PRK09224 threonine dehydratase 100.0 1.3E-35 2.8E-40 304.5 20.7 188 197-402 19-210 (504)
65 cd01561 CBS_like CBS_like: Thi 100.0 3.7E-35 7.9E-40 283.0 22.7 192 198-402 2-201 (291)
66 PRK06381 threonine synthase; V 100.0 5.2E-36 1.1E-40 292.5 16.6 192 10-218 10-204 (319)
67 PRK06382 threonine dehydratase 100.0 3E-36 6.4E-41 302.7 15.0 182 12-218 22-205 (406)
68 PRK06815 hypothetical protein; 100.0 2E-35 4.4E-40 287.8 20.0 187 197-402 19-209 (317)
69 TIGR01124 ilvA_2Cterm threonin 100.0 4.2E-35 9.2E-40 299.5 23.2 183 12-218 14-198 (499)
70 TIGR02991 ectoine_eutB ectoine 100.0 6.2E-36 1.3E-40 291.0 16.1 188 5-219 11-200 (317)
71 TIGR01127 ilvA_1Cterm threonin 100.0 4.1E-36 8.9E-41 300.0 15.2 170 16-203 1-171 (380)
72 TIGR01415 trpB_rel pyridoxal-p 100.0 4.2E-35 9.2E-40 293.2 22.3 201 195-403 65-290 (419)
73 PLN02356 phosphateglycerate ki 100.0 4.7E-35 1E-39 290.4 22.3 193 198-404 53-293 (423)
74 PRK07334 threonine dehydratase 100.0 1.7E-35 3.7E-40 297.1 19.3 187 197-402 22-212 (403)
75 cd06447 D-Ser-dehyd D-Serine d 100.0 9.2E-36 2E-40 295.7 17.2 189 13-218 50-277 (404)
76 PRK06110 hypothetical protein; 100.0 6.5E-36 1.4E-40 291.8 15.9 183 12-218 18-201 (322)
77 PLN02356 phosphateglycerate ki 100.0 5.5E-35 1.2E-39 290.0 22.3 184 12-203 50-273 (423)
78 PRK07591 threonine synthase; V 100.0 3.3E-35 7.2E-40 295.9 21.0 191 198-402 89-288 (421)
79 PRK08246 threonine dehydratase 100.0 3.5E-35 7.6E-40 285.0 20.3 184 197-402 22-206 (310)
80 PRK07048 serine/threonine dehy 100.0 1.1E-35 2.3E-40 290.4 16.4 183 12-218 21-204 (321)
81 PLN02556 cysteine synthase/L-3 100.0 6.6E-35 1.4E-39 288.0 21.5 177 12-203 56-239 (368)
82 PRK08197 threonine synthase; V 100.0 3.3E-35 7.2E-40 294.2 19.6 190 198-402 79-277 (394)
83 TIGR01415 trpB_rel pyridoxal-p 100.0 1.7E-35 3.8E-40 295.9 16.4 195 14-218 67-280 (419)
84 PRK08813 threonine dehydratase 100.0 1.4E-35 3.1E-40 289.3 15.4 173 12-218 36-209 (349)
85 PRK09224 threonine dehydratase 100.0 9.5E-35 2.1E-39 298.1 22.2 183 12-218 17-201 (504)
86 PRK06608 threonine dehydratase 100.0 8.9E-35 1.9E-39 284.8 21.0 184 198-400 23-210 (338)
87 PRK08639 threonine dehydratase 100.0 1.6E-35 3.5E-40 298.5 16.1 177 12-203 22-202 (420)
88 PRK08246 threonine dehydratase 100.0 2.1E-35 4.6E-40 286.5 16.4 169 12-201 20-189 (310)
89 cd06448 L-Ser-dehyd Serine deh 100.0 2.6E-35 5.6E-40 286.5 16.5 191 15-228 1-195 (316)
90 PRK08206 diaminopropionate amm 100.0 1.7E-34 3.8E-39 288.5 22.4 198 197-402 43-270 (399)
91 PRK10717 cysteine synthase A; 100.0 2.9E-35 6.3E-40 288.4 16.2 203 1-228 1-214 (330)
92 cd01562 Thr-dehyd Threonine de 100.0 9.2E-35 2E-39 282.1 19.4 188 198-402 17-206 (304)
93 PRK12391 tryptophan synthase s 100.0 2.2E-34 4.8E-39 288.3 22.5 201 196-403 75-299 (427)
94 PRK12391 tryptophan synthase s 100.0 3.4E-35 7.4E-40 294.2 16.6 197 12-218 74-289 (427)
95 PRK07409 threonine synthase; V 100.0 1.5E-34 3.2E-39 285.8 20.9 187 198-401 31-225 (353)
96 TIGR02035 D_Ser_am_lyase D-ser 100.0 1.7E-34 3.7E-39 288.9 20.7 193 197-401 69-303 (431)
97 PRK02991 D-serine dehydratase; 100.0 1.9E-34 4.1E-39 289.6 21.0 194 196-401 73-308 (441)
98 PLN02569 threonine synthase 100.0 7.7E-34 1.7E-38 288.3 25.6 180 14-207 132-316 (484)
99 TIGR01136 cysKM cysteine synth 100.0 5E-35 1.1E-39 283.0 16.1 186 12-218 4-195 (299)
100 KOG1250|consensus 100.0 2.8E-35 6.2E-40 279.3 13.4 175 12-204 63-239 (457)
101 PRK07334 threonine dehydratase 100.0 4E-35 8.7E-40 294.4 15.0 182 12-218 20-203 (403)
102 PRK06260 threonine synthase; V 100.0 1.4E-33 3.1E-38 282.6 26.1 178 12-205 64-242 (397)
103 cd01563 Thr-synth_1 Threonine 100.0 1.7E-34 3.8E-39 282.5 18.9 188 198-401 22-217 (324)
104 PRK06815 hypothetical protein; 100.0 7.1E-35 1.5E-39 284.0 16.0 182 12-218 17-200 (317)
105 TIGR02079 THD1 threonine dehyd 100.0 5E-35 1.1E-39 293.5 15.3 175 12-203 13-191 (409)
106 PRK06260 threonine synthase; V 100.0 2.3E-34 4.9E-39 288.5 19.6 190 198-402 67-264 (397)
107 PRK06721 threonine synthase; R 100.0 5.3E-34 1.1E-38 281.3 21.9 188 198-402 28-222 (352)
108 TIGR01139 cysK cysteine syntha 100.0 9.6E-35 2.1E-39 281.0 16.2 186 12-219 4-196 (298)
109 PRK06450 threonine synthase; V 100.0 3.1E-34 6.7E-39 280.5 19.7 177 198-402 58-242 (338)
110 PLN00011 cysteine synthase 100.0 1.6E-34 3.5E-39 281.9 16.4 186 12-218 14-206 (323)
111 PRK06608 threonine dehydratase 100.0 1.8E-34 3.9E-39 282.6 16.7 182 12-218 20-203 (338)
112 PRK06352 threonine synthase; V 100.0 1.4E-34 2.9E-39 285.2 15.7 175 12-204 25-200 (351)
113 cd01562 Thr-dehyd Threonine de 100.0 1.3E-34 2.7E-39 281.1 14.8 183 12-218 14-197 (304)
114 TIGR01137 cysta_beta cystathio 100.0 6.6E-34 1.4E-38 290.8 20.7 194 198-404 11-213 (454)
115 PRK02991 D-serine dehydratase; 100.0 2.4E-34 5.2E-39 288.9 16.8 189 13-218 73-300 (441)
116 KOG1252|consensus 100.0 4.9E-34 1.1E-38 266.9 17.5 187 12-219 49-245 (362)
117 PRK05638 threonine synthase; V 100.0 8.9E-34 1.9E-38 287.8 20.6 185 198-402 66-258 (442)
118 cd01563 Thr-synth_1 Threonine 100.0 3.5E-34 7.7E-39 280.3 16.9 190 12-218 19-209 (324)
119 PLN02569 threonine synthase 100.0 1.1E-33 2.4E-38 287.1 21.0 191 198-402 133-336 (484)
120 cd01561 CBS_like CBS_like: Thi 100.0 2.9E-34 6.3E-39 276.8 15.6 184 14-219 1-193 (291)
121 PRK08329 threonine synthase; V 100.0 1.4E-33 2.9E-38 277.9 20.6 180 198-402 64-251 (347)
122 cd00640 Trp-synth-beta_II Tryp 100.0 3.1E-33 6.8E-38 262.9 21.8 183 199-396 1-188 (244)
123 cd00640 Trp-synth-beta_II Tryp 100.0 2.8E-33 6.1E-38 263.2 21.4 173 16-203 1-176 (244)
124 TIGR02035 D_Ser_am_lyase D-ser 100.0 6.1E-34 1.3E-38 284.9 17.5 190 12-218 67-295 (431)
125 PRK08206 diaminopropionate amm 100.0 3.6E-34 7.9E-39 286.2 15.7 190 6-203 35-250 (399)
126 PRK07409 threonine synthase; V 100.0 5.4E-34 1.2E-38 281.7 16.4 174 12-204 28-203 (353)
127 PRK05638 threonine synthase; V 100.0 4.4E-34 9.6E-39 290.0 16.0 173 12-205 63-236 (442)
128 PRK06450 threonine synthase; V 100.0 4.8E-34 1E-38 279.2 15.2 165 12-205 55-220 (338)
129 PRK06721 threonine synthase; R 100.0 7.2E-34 1.6E-38 280.3 16.0 187 12-218 25-213 (352)
130 TIGR03528 2_3_DAP_am_ly diamin 100.0 3.1E-33 6.8E-38 278.6 20.6 198 197-402 40-268 (396)
131 TIGR01747 diampropi_NH3ly diam 100.0 7.4E-33 1.6E-37 274.1 21.9 197 197-402 21-249 (376)
132 PRK08329 threonine synthase; V 100.0 1.4E-33 3E-38 277.8 16.0 179 14-217 63-241 (347)
133 KOG1251|consensus 100.0 1.7E-33 3.8E-38 251.4 15.0 184 198-400 25-212 (323)
134 KOG1395|consensus 100.0 8.8E-34 1.9E-38 264.7 11.8 201 2-203 110-314 (477)
135 TIGR01275 ACC_deam_rel pyridox 100.0 1.5E-32 3.3E-37 267.2 20.8 195 195-399 4-207 (311)
136 KOG1251|consensus 100.0 2.3E-33 4.9E-38 250.7 13.5 182 12-218 22-205 (323)
137 KOG1252|consensus 100.0 2.3E-33 5.1E-38 262.4 13.8 195 198-405 52-256 (362)
138 cd06449 ACCD Aminocyclopropane 100.0 2.8E-32 6E-37 264.8 21.8 198 199-402 1-215 (307)
139 TIGR03528 2_3_DAP_am_ly diamin 100.0 5.3E-33 1.1E-37 276.9 16.9 186 8-201 34-246 (396)
140 TIGR01137 cysta_beta cystathio 100.0 3.8E-33 8.1E-38 285.3 15.0 177 12-203 8-193 (454)
141 TIGR00260 thrC threonine synth 100.0 1.3E-32 2.7E-37 269.8 16.6 190 197-400 22-219 (328)
142 KOG1395|consensus 100.0 5.4E-33 1.2E-37 259.4 13.1 213 195-407 119-336 (477)
143 TIGR01747 diampropi_NH3ly diam 100.0 1.2E-32 2.5E-37 272.7 16.1 184 12-203 19-229 (376)
144 PRK12390 1-aminocyclopropane-1 100.0 1.2E-31 2.6E-36 263.5 21.6 200 198-402 15-230 (337)
145 PRK03910 D-cysteine desulfhydr 100.0 1.3E-31 2.9E-36 262.6 21.8 196 197-401 14-223 (331)
146 TIGR00260 thrC threonine synth 100.0 1.4E-32 3E-37 269.5 14.5 179 11-203 19-198 (328)
147 TIGR01274 ACC_deam 1-aminocycl 100.0 1.8E-31 4E-36 262.1 21.5 202 197-402 13-229 (337)
148 TIGR01275 ACC_deam_rel pyridox 100.0 2.4E-31 5.1E-36 258.9 15.1 183 11-203 3-192 (311)
149 PRK14045 1-aminocyclopropane-1 100.0 2.2E-30 4.7E-35 253.6 21.6 192 197-398 20-221 (329)
150 KOG1481|consensus 100.0 6.4E-31 1.4E-35 239.0 15.7 207 12-237 46-265 (391)
151 TIGR03844 cysteate_syn cysteat 100.0 1E-30 2.2E-35 260.5 17.8 189 198-402 62-266 (398)
152 TIGR03844 cysteate_syn cysteat 100.0 3.8E-31 8.2E-36 263.6 13.7 177 12-205 59-243 (398)
153 PF00291 PALP: Pyridoxal-phosp 100.0 1.3E-30 2.9E-35 252.8 14.5 190 197-402 6-206 (306)
154 PRK03910 D-cysteine desulfhydr 100.0 3.4E-30 7.3E-35 252.6 15.6 191 12-217 12-214 (331)
155 PRK12390 1-aminocyclopropane-1 100.0 7.9E-30 1.7E-34 250.6 17.5 196 12-219 12-222 (337)
156 cd06449 ACCD Aminocyclopropane 100.0 5.8E-30 1.2E-34 248.6 15.7 192 16-218 1-206 (307)
157 TIGR01274 ACC_deam 1-aminocycl 100.0 1.3E-29 2.9E-34 248.9 16.6 195 12-218 11-220 (337)
158 KOG1481|consensus 100.0 7.3E-30 1.6E-34 232.1 13.2 193 198-403 49-256 (391)
159 PF00291 PALP: Pyridoxal-phosp 100.0 9.8E-30 2.1E-34 246.8 12.7 189 12-218 4-197 (306)
160 COG1350 Predicted alternative 100.0 2.2E-28 4.8E-33 226.9 17.5 311 12-340 75-418 (432)
161 PRK14045 1-aminocyclopropane-1 100.0 1.5E-28 3.2E-33 240.6 14.5 192 12-218 18-216 (329)
162 COG0498 ThrC Threonine synthas 99.9 2.9E-27 6.4E-32 233.4 13.6 178 13-205 74-254 (411)
163 COG0498 ThrC Threonine synthas 99.9 5.3E-26 1.2E-30 224.5 17.0 192 197-402 75-276 (411)
164 COG1350 Predicted alternative 99.9 8.9E-26 1.9E-30 209.6 13.7 202 195-403 75-300 (432)
165 COG2515 Acd 1-aminocyclopropan 99.9 4.6E-23 9.9E-28 191.2 18.0 199 195-401 12-220 (323)
166 COG2515 Acd 1-aminocyclopropan 99.8 1.2E-19 2.7E-24 168.4 15.5 184 10-202 10-202 (323)
167 PRK09225 threonine synthase; V 99.8 2.2E-19 4.8E-24 181.5 11.3 167 15-200 88-265 (462)
168 cd01560 Thr-synth_2 Threonine 99.8 6.9E-19 1.5E-23 178.0 11.8 167 16-200 88-267 (460)
169 PRK09225 threonine synthase; V 99.7 9.7E-17 2.1E-21 162.3 18.1 176 215-401 97-284 (462)
170 cd01560 Thr-synth_2 Threonine 99.7 4.7E-16 1E-20 157.4 17.9 176 214-398 95-284 (460)
171 COG3048 DsdA D-serine dehydrat 99.5 6E-14 1.3E-18 130.0 12.0 193 197-400 77-310 (443)
172 COG3048 DsdA D-serine dehydrat 99.4 3.2E-12 6.9E-17 118.7 10.3 179 13-202 76-292 (443)
173 PRK12779 putative bifunctional 92.1 11 0.00025 42.4 18.9 54 247-301 448-503 (944)
174 PRK12778 putative bifunctional 90.7 24 0.00052 38.8 19.5 54 247-301 571-627 (752)
175 TIGR01316 gltA glutamate synth 89.9 25 0.00055 36.0 18.9 54 247-301 273-328 (449)
176 PRK12775 putative trifunctiona 86.2 35 0.00076 38.9 17.3 54 247-301 572-628 (1006)
177 cd06533 Glyco_transf_WecG_TagA 82.9 8.1 0.00017 34.0 8.5 103 258-376 10-112 (171)
178 PRK12831 putative oxidoreducta 82.4 64 0.0014 33.2 19.4 54 247-301 282-337 (464)
179 PRK09853 putative selenate red 81.8 84 0.0018 35.8 17.5 31 65-96 541-571 (1019)
180 COG0492 TrxB Thioredoxin reduc 79.2 11 0.00024 36.6 8.7 185 65-295 5-191 (305)
181 PF00070 Pyr_redox: Pyridine n 78.4 10 0.00022 28.5 6.6 32 249-281 2-33 (80)
182 PRK12771 putative glutamate sy 77.6 79 0.0017 33.4 15.4 54 247-301 268-324 (564)
183 PRK12814 putative NADPH-depend 77.4 1.1E+02 0.0024 33.0 18.2 54 247-301 324-380 (652)
184 PF05368 NmrA: NmrA-like famil 76.3 9.3 0.0002 35.0 7.1 51 66-120 1-51 (233)
185 PF03808 Glyco_tran_WecB: Glyc 74.2 20 0.00043 31.6 8.3 103 258-376 12-114 (172)
186 PRK12769 putative oxidoreducta 73.5 1.4E+02 0.003 32.3 16.9 54 247-301 469-525 (654)
187 PRK11749 dihydropyrimidine deh 73.0 1.2E+02 0.0025 31.1 18.1 54 247-301 274-330 (457)
188 COG1751 Uncharacterized conser 70.0 29 0.00064 29.9 7.8 76 225-301 7-88 (186)
189 COG2894 MinD Septum formation 68.2 60 0.0013 30.1 9.9 122 259-402 20-151 (272)
190 COG2518 Pcm Protein-L-isoaspar 67.6 45 0.00098 30.5 9.1 108 53-190 62-171 (209)
191 TIGR00670 asp_carb_tr aspartat 67.2 23 0.00049 34.4 7.6 47 73-120 162-208 (301)
192 KOG0025|consensus 67.2 23 0.0005 34.0 7.3 68 233-303 147-216 (354)
193 KOG0025|consensus 66.7 26 0.00057 33.7 7.6 59 60-120 157-216 (354)
194 COG0796 MurI Glutamate racemas 65.7 41 0.00088 32.0 8.7 69 325-399 33-102 (269)
195 TIGR00696 wecB_tagA_cpsF bacte 65.1 43 0.00094 29.7 8.4 101 259-376 13-113 (177)
196 PRK09257 aromatic amino acid a 62.1 81 0.0018 31.4 10.9 107 224-338 67-187 (396)
197 TIGR00670 asp_carb_tr aspartat 62.1 23 0.0005 34.3 6.6 45 256-302 162-207 (301)
198 COG0078 ArgF Ornithine carbamo 62.1 29 0.00064 33.5 7.0 109 8-120 100-213 (310)
199 PF00107 ADH_zinc_N: Zinc-bind 61.6 21 0.00045 29.1 5.5 40 75-120 2-41 (130)
200 PF00070 Pyr_redox: Pyridine n 59.9 45 0.00097 24.8 6.6 33 66-99 2-34 (80)
201 PF05368 NmrA: NmrA-like famil 59.7 45 0.00096 30.4 7.9 49 251-303 3-51 (233)
202 TIGR03315 Se_ygfK putative sel 59.3 3.2E+02 0.007 31.3 18.0 30 65-95 539-568 (1012)
203 PF01041 DegT_DnrJ_EryC1: DegT 58.9 26 0.00057 34.6 6.6 61 240-304 34-94 (363)
204 PF04127 DFP: DNA / pantothena 58.1 68 0.0015 28.6 8.5 62 248-320 21-82 (185)
205 cd08230 glucose_DH Glucose deh 58.1 35 0.00075 33.4 7.3 49 65-117 175-223 (355)
206 PF01210 NAD_Gly3P_dh_N: NAD-d 58.0 11 0.00023 32.7 3.2 28 252-279 4-31 (157)
207 PF00185 OTCace: Aspartate/orn 57.9 29 0.00062 30.1 5.9 53 73-128 13-71 (158)
208 COG0078 ArgF Ornithine carbamo 57.9 40 0.00087 32.5 7.2 54 248-302 155-212 (310)
209 PF03808 Glyco_tran_WecB: Glyc 57.5 45 0.00098 29.3 7.2 98 76-189 13-110 (172)
210 TIGR03366 HpnZ_proposed putati 55.4 52 0.0011 31.0 7.8 47 66-118 124-170 (280)
211 PF00106 adh_short: short chai 55.3 56 0.0012 27.6 7.4 56 65-120 2-58 (167)
212 PF01210 NAD_Gly3P_dh_N: NAD-d 55.0 16 0.00034 31.5 3.8 27 70-96 5-31 (157)
213 PRK07109 short chain dehydroge 52.9 73 0.0016 31.1 8.5 55 64-120 9-63 (334)
214 PF01041 DegT_DnrJ_EryC1: DegT 52.8 50 0.0011 32.6 7.5 65 53-121 30-94 (363)
215 PF07279 DUF1442: Protein of u 52.8 1.1E+02 0.0023 28.2 8.7 60 53-114 30-94 (218)
216 TIGR01372 soxA sarcosine oxida 52.3 4.1E+02 0.0089 30.4 15.5 52 247-300 318-369 (985)
217 PF00107 ADH_zinc_N: Zinc-bind 51.8 53 0.0011 26.6 6.4 39 259-303 3-41 (130)
218 COG0604 Qor NADPH:quinone redu 51.1 86 0.0019 30.6 8.7 52 62-119 141-193 (326)
219 cd06533 Glyco_transf_WecG_TagA 51.0 75 0.0016 27.8 7.5 98 76-189 11-108 (171)
220 COG0026 PurK Phosphoribosylami 51.0 34 0.00074 34.0 5.6 31 253-283 7-37 (375)
221 PRK11706 TDP-4-oxo-6-deoxy-D-g 50.4 94 0.002 30.8 9.0 59 241-303 41-99 (375)
222 KOG0023|consensus 50.4 84 0.0018 30.8 8.0 56 61-121 179-234 (360)
223 PRK09880 L-idonate 5-dehydroge 50.1 63 0.0014 31.4 7.6 47 66-118 173-219 (343)
224 PF01262 AlaDh_PNT_C: Alanine 50.1 41 0.0009 29.3 5.7 51 63-120 20-70 (168)
225 TIGR02822 adh_fam_2 zinc-bindi 49.9 56 0.0012 31.7 7.2 46 66-118 169-214 (329)
226 TIGR03366 HpnZ_proposed putati 49.7 60 0.0013 30.6 7.2 49 247-301 122-170 (280)
227 cd08230 glucose_DH Glucose deh 49.5 48 0.001 32.4 6.7 50 247-300 174-223 (355)
228 PRK06128 oxidoreductase; Provi 49.3 1.1E+02 0.0023 29.2 9.0 57 64-120 56-112 (300)
229 PRK09880 L-idonate 5-dehydroge 49.1 59 0.0013 31.7 7.2 49 247-301 171-219 (343)
230 PRK08227 autoinducer 2 aldolas 48.6 1.8E+02 0.0039 27.6 10.0 92 213-304 74-179 (264)
231 cd08301 alcohol_DH_plants Plan 48.3 72 0.0016 31.3 7.8 50 63-118 187-237 (369)
232 PRK12779 putative bifunctional 48.3 88 0.0019 35.5 9.2 30 247-277 307-336 (944)
233 PTZ00323 NAD+ synthase; Provis 48.0 1.8E+02 0.0039 28.1 10.1 71 241-311 41-120 (294)
234 PF07279 DUF1442: Protein of u 47.8 1.3E+02 0.0029 27.6 8.6 45 236-280 30-79 (218)
235 PRK06182 short chain dehydroge 47.7 1.5E+02 0.0032 27.6 9.5 51 64-120 4-54 (273)
236 PF04127 DFP: DNA / pantothena 47.6 96 0.0021 27.7 7.7 61 65-136 21-81 (185)
237 PF00106 adh_short: short chai 47.6 92 0.002 26.2 7.5 72 248-319 2-75 (167)
238 PRK11706 TDP-4-oxo-6-deoxy-D-g 47.5 97 0.0021 30.7 8.6 73 43-120 27-99 (375)
239 COG1751 Uncharacterized conser 47.4 1.1E+02 0.0025 26.4 7.5 73 46-119 11-89 (186)
240 TIGR02825 B4_12hDH leukotriene 47.2 77 0.0017 30.4 7.7 51 63-119 138-189 (325)
241 TIGR02819 fdhA_non_GSH formald 47.1 1.2E+02 0.0026 30.4 9.2 48 247-300 187-234 (393)
242 cd08294 leukotriene_B4_DH_like 46.7 1.3E+02 0.0029 28.5 9.3 48 66-119 147-194 (329)
243 PF09837 DUF2064: Uncharacteri 46.2 1.7E+02 0.0036 24.1 9.1 103 79-198 2-106 (122)
244 PF00670 AdoHcyase_NAD: S-aden 45.7 89 0.0019 27.3 6.9 88 247-373 24-111 (162)
245 PRK06139 short chain dehydroge 45.6 1E+02 0.0022 30.1 8.2 55 64-120 8-62 (330)
246 PF02826 2-Hacid_dh_C: D-isome 44.8 2.1E+02 0.0046 24.9 9.6 118 243-396 33-153 (178)
247 PF02540 NAD_synthase: NAD syn 44.6 1.7E+02 0.0036 27.4 9.1 63 241-303 13-80 (242)
248 cd08281 liver_ADH_like1 Zinc-d 44.6 77 0.0017 31.2 7.3 47 66-118 195-241 (371)
249 TIGR02819 fdhA_non_GSH formald 44.5 1.4E+02 0.0031 29.8 9.3 46 66-117 189-234 (393)
250 PRK00768 nadE NAD synthetase; 44.4 2.8E+02 0.0061 26.4 10.6 64 240-303 32-108 (268)
251 PTZ00376 aspartate aminotransf 43.5 2.3E+02 0.005 28.3 10.7 110 224-338 70-191 (404)
252 TIGR02818 adh_III_F_hyde S-(hy 43.4 95 0.0021 30.6 7.8 47 66-118 189-235 (368)
253 PRK12481 2-deoxy-D-gluconate 3 43.3 1.5E+02 0.0033 27.1 8.8 53 64-120 9-61 (251)
254 cd08300 alcohol_DH_class_III c 43.3 94 0.002 30.6 7.7 47 66-118 190-236 (368)
255 PRK07097 gluconate 5-dehydroge 42.6 1.3E+02 0.0028 27.8 8.2 55 64-120 11-65 (265)
256 PF11814 DUF3335: Peptidase_C3 42.1 46 0.001 30.3 4.7 34 66-99 44-79 (207)
257 PLN02740 Alcohol dehydrogenase 42.0 92 0.002 30.9 7.5 51 63-118 198-248 (381)
258 TIGR02822 adh_fam_2 zinc-bindi 42.0 80 0.0017 30.6 6.9 47 247-300 167-213 (329)
259 PRK06139 short chain dehydroge 41.7 1.5E+02 0.0033 28.9 8.8 54 247-302 8-61 (330)
260 COG1454 EutG Alcohol dehydroge 41.7 1.9E+02 0.0041 29.0 9.4 54 311-377 46-99 (377)
261 cd08294 leukotriene_B4_DH_like 41.4 1.8E+02 0.0038 27.7 9.2 49 247-301 145-193 (329)
262 PF03853 YjeF_N: YjeF-related 41.3 1.3E+02 0.0027 26.3 7.4 55 247-301 26-86 (169)
263 TIGR00696 wecB_tagA_cpsF bacte 41.3 1.1E+02 0.0024 27.1 7.0 59 76-138 13-71 (177)
264 PRK10309 galactitol-1-phosphat 41.0 90 0.002 30.3 7.2 47 66-118 164-210 (347)
265 cd08284 FDH_like_2 Glutathione 40.8 1.5E+02 0.0032 28.5 8.6 46 66-117 171-216 (344)
266 cd08243 quinone_oxidoreductase 40.6 1.2E+02 0.0026 28.5 7.8 48 66-119 146-193 (320)
267 PRK07109 short chain dehydroge 40.6 1.7E+02 0.0037 28.5 9.0 55 247-303 9-63 (334)
268 PRK06348 aspartate aminotransf 40.6 3E+02 0.0064 27.2 10.9 75 224-303 64-141 (384)
269 cd08295 double_bond_reductase_ 40.4 1E+02 0.0022 29.8 7.3 47 66-118 155-202 (338)
270 COG1165 MenD 2-succinyl-6-hydr 40.2 1.2E+02 0.0025 32.0 7.7 100 164-297 12-116 (566)
271 PRK06128 oxidoreductase; Provi 40.0 2.3E+02 0.0051 26.8 9.7 57 247-303 56-112 (300)
272 TIGR01832 kduD 2-deoxy-D-gluco 39.8 2E+02 0.0043 26.0 9.0 53 64-120 6-58 (248)
273 PRK08017 oxidoreductase; Provi 39.6 2.2E+02 0.0047 25.9 9.2 51 65-121 4-54 (256)
274 PRK13394 3-hydroxybutyrate deh 39.6 1.8E+02 0.004 26.5 8.7 55 64-120 8-62 (262)
275 cd08291 ETR_like_1 2-enoyl thi 39.2 2.3E+02 0.0051 27.0 9.7 49 248-302 145-194 (324)
276 PRK07523 gluconate 5-dehydroge 39.1 2.2E+02 0.0048 25.9 9.2 55 64-120 11-65 (255)
277 PRK12744 short chain dehydroge 39.1 2.1E+02 0.0045 26.2 9.0 57 64-120 9-67 (257)
278 TIGR03201 dearomat_had 6-hydro 39.1 86 0.0019 30.6 6.7 46 66-118 170-215 (349)
279 PRK12743 oxidoreductase; Provi 39.0 1.8E+02 0.0039 26.6 8.6 54 248-302 4-57 (256)
280 PRK05993 short chain dehydroge 39.0 2.1E+02 0.0045 26.7 9.1 50 65-120 6-55 (277)
281 PRK11891 aspartate carbamoyltr 38.9 1.2E+02 0.0027 30.9 7.7 53 73-128 253-306 (429)
282 KOG1201|consensus 38.8 2.8E+02 0.006 26.9 9.6 71 66-138 41-112 (300)
283 PRK02610 histidinol-phosphate 38.7 2.4E+02 0.0053 27.7 9.9 74 226-303 66-144 (374)
284 PF00764 Arginosuc_synth: Argi 38.6 3.1E+02 0.0068 27.6 10.4 126 253-393 4-138 (388)
285 PRK08277 D-mannonate oxidoredu 38.6 2E+02 0.0043 26.7 8.9 55 64-120 11-65 (278)
286 PRK13394 3-hydroxybutyrate deh 38.3 1.9E+02 0.0041 26.4 8.6 55 247-303 8-62 (262)
287 PRK08960 hypothetical protein; 38.1 3.1E+02 0.0066 27.1 10.6 74 225-303 68-144 (387)
288 PF02887 PK_C: Pyruvate kinase 38.1 67 0.0015 26.0 4.8 80 235-321 6-87 (117)
289 PRK07985 oxidoreductase; Provi 38.0 2.1E+02 0.0046 27.1 9.0 31 64-94 50-80 (294)
290 cd00401 AdoHcyase S-adenosyl-L 38.0 94 0.002 31.6 6.7 48 64-117 202-249 (413)
291 cd08256 Zn_ADH2 Alcohol dehydr 37.9 97 0.0021 30.1 6.8 47 66-118 178-224 (350)
292 PRK07523 gluconate 5-dehydroge 37.9 3E+02 0.0065 25.0 9.9 54 247-302 11-64 (255)
293 PF14336 DUF4392: Domain of un 37.6 1.3E+02 0.0028 29.0 7.3 114 76-197 65-190 (291)
294 PF00731 AIRC: AIR carboxylase 37.6 2.1E+02 0.0045 24.7 7.8 49 351-404 45-93 (150)
295 PF00185 OTCace: Aspartate/orn 37.2 78 0.0017 27.4 5.3 55 256-312 13-72 (158)
296 PRK12938 acetyacetyl-CoA reduc 37.2 2.2E+02 0.0047 25.8 8.7 56 64-120 4-59 (246)
297 cd08284 FDH_like_2 Glutathione 37.2 1.9E+02 0.0041 27.7 8.8 48 247-300 169-216 (344)
298 PRK12828 short chain dehydroge 37.0 2.3E+02 0.0049 25.2 8.8 55 64-120 8-62 (239)
299 PF09837 DUF2064: Uncharacteri 37.0 2.4E+02 0.0052 23.2 10.0 98 262-375 2-99 (122)
300 PLN02178 cinnamyl-alcohol dehy 36.9 1E+02 0.0022 30.6 6.9 47 66-118 182-228 (375)
301 PF08659 KR: KR domain; Inter 36.8 2.2E+02 0.0048 24.8 8.3 73 249-321 3-78 (181)
302 PRK12823 benD 1,6-dihydroxycyc 36.6 1.7E+02 0.0037 26.7 8.0 53 64-119 9-61 (260)
303 PRK12937 short chain dehydroge 36.5 3.1E+02 0.0067 24.6 9.7 56 247-303 6-61 (245)
304 PLN03154 putative allyl alcoho 36.5 1.2E+02 0.0027 29.6 7.3 51 63-119 158-210 (348)
305 TIGR00561 pntA NAD(P) transhyd 36.4 98 0.0021 32.4 6.7 48 66-120 167-214 (511)
306 PRK07097 gluconate 5-dehydroge 36.3 1.9E+02 0.0041 26.7 8.3 55 247-303 11-65 (265)
307 PRK12743 oxidoreductase; Provi 36.3 1.8E+02 0.004 26.6 8.2 55 65-120 4-58 (256)
308 TIGR03451 mycoS_dep_FDH mycoth 36.2 1.3E+02 0.0028 29.4 7.4 47 66-118 180-226 (358)
309 cd08239 THR_DH_like L-threonin 36.2 1.4E+02 0.003 28.8 7.6 47 66-118 167-213 (339)
310 TIGR02379 ECA_wecE TDP-4-keto- 36.2 1.2E+02 0.0027 30.1 7.3 57 243-303 43-99 (376)
311 PF03853 YjeF_N: YjeF-related 36.1 2E+02 0.0044 25.0 7.9 57 63-119 25-87 (169)
312 COG0604 Qor NADPH:quinone redu 36.1 2.5E+02 0.0055 27.3 9.4 49 247-301 144-192 (326)
313 cd08277 liver_alcohol_DH_like 36.1 1.3E+02 0.0028 29.5 7.4 47 66-118 188-234 (365)
314 COG0399 WecE Predicted pyridox 36.0 1.3E+02 0.0028 30.2 7.2 79 35-121 25-103 (374)
315 PF13450 NAD_binding_8: NAD(P) 36.0 62 0.0013 23.5 3.9 26 71-96 3-28 (68)
316 PF00465 Fe-ADH: Iron-containi 35.9 1.1E+02 0.0025 30.2 7.0 88 273-377 2-91 (366)
317 COG1167 ARO8 Transcriptional r 35.8 2.9E+02 0.0064 28.3 10.2 104 226-338 132-242 (459)
318 TIGR02415 23BDH acetoin reduct 35.8 2.3E+02 0.005 25.6 8.8 54 65-120 2-55 (254)
319 PRK13376 pyrB bifunctional asp 35.8 1.9E+02 0.0042 30.3 8.7 45 256-302 186-232 (525)
320 PRK12939 short chain dehydroge 35.7 2E+02 0.0044 25.9 8.3 30 64-93 8-37 (250)
321 COG1063 Tdh Threonine dehydrog 35.6 1.1E+02 0.0024 30.1 6.8 50 66-120 171-221 (350)
322 cd08242 MDR_like Medium chain 35.5 1.4E+02 0.003 28.4 7.4 45 66-117 159-203 (319)
323 cd08239 THR_DH_like L-threonin 35.4 1.3E+02 0.0029 28.9 7.3 49 247-301 165-213 (339)
324 cd08233 butanediol_DH_like (2R 35.3 1.5E+02 0.0032 28.8 7.6 48 66-119 176-223 (351)
325 cd08256 Zn_ADH2 Alcohol dehydr 35.3 2.2E+02 0.0047 27.6 8.8 49 247-301 176-224 (350)
326 PRK07324 transaminase; Validat 35.2 2.8E+02 0.006 27.4 9.7 71 226-303 62-132 (373)
327 cd08233 butanediol_DH_like (2R 35.2 2.1E+02 0.0046 27.7 8.7 49 247-301 174-222 (351)
328 TIGR03201 dearomat_had 6-hydro 34.9 2.1E+02 0.0046 27.7 8.7 48 247-301 168-215 (349)
329 PRK08993 2-deoxy-D-gluconate 3 34.9 3E+02 0.0065 25.1 9.4 53 64-120 11-63 (253)
330 PRK09424 pntA NAD(P) transhydr 34.8 1.1E+02 0.0023 32.1 6.7 49 247-302 166-214 (509)
331 PRK08862 short chain dehydroge 34.6 1.7E+02 0.0037 26.6 7.5 53 248-302 7-59 (227)
332 PRK08303 short chain dehydroge 34.4 2.8E+02 0.006 26.6 9.2 31 64-94 9-39 (305)
333 cd08293 PTGR2 Prostaglandin re 34.3 1.8E+02 0.0039 27.9 8.1 49 65-119 157-207 (345)
334 TIGR02415 23BDH acetoin reduct 34.2 3.3E+02 0.0071 24.6 9.5 53 249-303 3-55 (254)
335 PRK07550 hypothetical protein; 34.1 4.4E+02 0.0096 25.9 11.0 74 226-304 67-143 (386)
336 cd08291 ETR_like_1 2-enoyl thi 34.0 2.1E+02 0.0046 27.2 8.5 49 65-119 145-194 (324)
337 PRK08217 fabG 3-ketoacyl-(acyl 34.0 2.1E+02 0.0046 25.8 8.1 55 64-120 6-60 (253)
338 PF00890 FAD_binding_2: FAD bi 33.9 55 0.0012 32.8 4.4 30 66-96 2-31 (417)
339 PRK06847 hypothetical protein; 33.9 58 0.0013 32.0 4.5 30 64-94 5-34 (375)
340 cd08285 NADP_ADH NADP(H)-depen 33.8 1.3E+02 0.0028 29.2 7.0 46 66-117 170-215 (351)
341 COG1107 Archaea-specific RecJ- 33.5 83 0.0018 33.2 5.4 46 266-311 411-458 (715)
342 PRK00779 ornithine carbamoyltr 33.3 2.2E+02 0.0048 27.6 8.3 47 255-302 161-208 (304)
343 PLN03050 pyridoxine (pyridoxam 33.2 1.1E+02 0.0023 28.7 5.9 52 248-299 62-117 (246)
344 PLN02586 probable cinnamyl alc 33.1 1.8E+02 0.0039 28.5 7.9 47 66-118 187-233 (360)
345 cd08281 liver_ADH_like1 Zinc-d 33.1 2.3E+02 0.005 27.8 8.7 49 247-301 193-241 (371)
346 TIGR01292 TRX_reduct thioredox 33.0 1.2E+02 0.0027 28.3 6.5 53 247-300 142-195 (300)
347 PRK00865 glutamate racemase; P 33.0 2.4E+02 0.0052 26.5 8.3 91 299-397 8-100 (261)
348 cd00401 AdoHcyase S-adenosyl-L 33.0 1.1E+02 0.0024 31.1 6.3 47 247-300 203-249 (413)
349 PRK07985 oxidoreductase; Provi 32.8 3.8E+02 0.0081 25.3 9.9 56 247-302 50-105 (294)
350 COG2236 Predicted phosphoribos 32.8 1.1E+02 0.0025 27.5 5.7 49 349-397 15-64 (192)
351 PF01262 AlaDh_PNT_C: Alanine 32.7 2.2E+02 0.0048 24.6 7.6 50 247-303 21-70 (168)
352 PRK10309 galactitol-1-phosphat 32.6 1.6E+02 0.0035 28.5 7.4 49 247-301 162-210 (347)
353 PRK05693 short chain dehydroge 32.6 3.4E+02 0.0074 25.1 9.4 50 65-120 3-52 (274)
354 PRK11891 aspartate carbamoyltr 32.4 1.3E+02 0.0028 30.7 6.7 45 256-302 253-299 (429)
355 TIGR02379 ECA_wecE TDP-4-keto- 32.3 1.8E+02 0.0039 28.9 7.8 61 57-121 40-100 (376)
356 COG1433 Uncharacterized conser 32.2 1.7E+02 0.0036 24.3 6.2 53 259-316 54-106 (121)
357 PRK08416 7-alpha-hydroxysteroi 32.1 2.1E+02 0.0046 26.3 7.9 31 64-94 9-39 (260)
358 PRK12771 putative glutamate sy 32.1 1.2E+02 0.0026 32.1 6.7 54 247-301 138-206 (564)
359 PF00155 Aminotran_1_2: Aminot 32.1 3.4E+02 0.0073 26.3 9.6 110 224-337 42-162 (363)
360 cd01011 nicotinamidase Nicotin 32.1 1.3E+02 0.0029 26.8 6.2 61 240-300 132-196 (196)
361 PRK11658 UDP-4-amino-4-deoxy-L 32.1 1.5E+02 0.0032 29.5 7.1 14 290-303 88-101 (379)
362 PRK08277 D-mannonate oxidoredu 31.9 3.7E+02 0.0079 24.9 9.5 55 247-303 11-65 (278)
363 PRK08589 short chain dehydroge 31.8 2.9E+02 0.0063 25.6 8.8 53 64-119 7-59 (272)
364 PF13460 NAD_binding_10: NADH( 31.7 2.1E+02 0.0045 24.6 7.3 47 66-120 1-47 (183)
365 PRK06172 short chain dehydroge 31.6 2.4E+02 0.0052 25.6 8.1 31 64-94 8-38 (253)
366 COG2130 Putative NADP-dependen 31.5 2.2E+02 0.0049 27.7 7.6 47 66-118 154-201 (340)
367 PLN02827 Alcohol dehydrogenase 31.5 1.5E+02 0.0034 29.3 7.2 47 66-118 197-243 (378)
368 COG0399 WecE Predicted pyridox 31.5 1.5E+02 0.0033 29.6 6.9 62 239-304 42-103 (374)
369 cd08287 FDH_like_ADH3 formalde 31.5 1.6E+02 0.0034 28.4 7.1 46 66-117 172-217 (345)
370 PF12831 FAD_oxidored: FAD dep 31.5 51 0.0011 33.5 3.7 31 249-280 2-32 (428)
371 cd08296 CAD_like Cinnamyl alco 31.5 1.9E+02 0.004 27.8 7.6 45 66-117 167-211 (333)
372 PRK12823 benD 1,6-dihydroxycyc 31.4 3.4E+02 0.0074 24.7 9.1 53 247-302 9-61 (260)
373 cd08231 MDR_TM0436_like Hypoth 31.4 1.5E+02 0.0033 28.8 7.1 46 66-117 181-226 (361)
374 PRK07666 fabG 3-ketoacyl-(acyl 31.4 2.4E+02 0.0053 25.3 8.0 55 247-303 8-62 (239)
375 PRK11658 UDP-4-amino-4-deoxy-L 31.3 1.9E+02 0.0041 28.7 7.7 61 57-121 42-102 (379)
376 PRK09424 pntA NAD(P) transhydr 31.3 1.5E+02 0.0033 31.0 7.1 48 66-120 168-215 (509)
377 TIGR01809 Shik-DH-AROM shikima 30.9 2.1E+02 0.0047 27.2 7.7 70 25-95 83-156 (282)
378 PRK08862 short chain dehydroge 30.8 2.7E+02 0.0059 25.2 8.2 30 64-93 6-35 (227)
379 PRK06181 short chain dehydroge 30.7 3.6E+02 0.0078 24.6 9.2 52 249-302 4-55 (263)
380 PRK13984 putative oxidoreducta 30.7 6.8E+02 0.015 26.6 18.8 30 66-96 286-315 (604)
381 PF01884 PcrB: PcrB family; I 30.7 3.6E+02 0.0078 25.1 8.7 74 229-306 137-212 (230)
382 PRK10669 putative cation:proto 30.6 1.7E+02 0.0036 30.9 7.5 50 64-120 418-467 (558)
383 PLN02342 ornithine carbamoyltr 30.5 2.1E+02 0.0046 28.3 7.7 45 256-301 204-249 (348)
384 PRK05876 short chain dehydroge 30.5 3.1E+02 0.0067 25.6 8.8 30 64-93 7-36 (275)
385 PRK07478 short chain dehydroge 30.4 3E+02 0.0066 25.0 8.6 31 64-94 7-37 (254)
386 PRK07666 fabG 3-ketoacyl-(acyl 30.4 2.6E+02 0.0057 25.1 8.1 31 64-94 8-38 (239)
387 TIGR00438 rrmJ cell division p 30.3 1.2E+02 0.0025 26.8 5.4 47 351-398 21-67 (188)
388 cd08240 6_hydroxyhexanoate_dh_ 30.2 1.9E+02 0.0041 27.9 7.5 46 66-117 179-224 (350)
389 PRK12826 3-ketoacyl-(acyl-carr 30.2 2.7E+02 0.0058 25.0 8.1 55 64-120 7-61 (251)
390 cd08282 PFDH_like Pseudomonas 30.2 2.5E+02 0.0055 27.6 8.4 45 66-116 180-224 (375)
391 cd08288 MDR_yhdh Yhdh putative 30.1 1.4E+02 0.003 28.4 6.4 47 65-117 149-195 (324)
392 TIGR02825 B4_12hDH leukotriene 30.1 2.1E+02 0.0046 27.3 7.7 49 247-301 140-188 (325)
393 PRK04523 N-acetylornithine car 30.1 1.4E+02 0.0029 29.5 6.3 52 73-128 185-242 (335)
394 PF13478 XdhC_C: XdhC Rossmann 30.1 53 0.0011 27.7 3.0 29 250-279 2-30 (136)
395 PRK06935 2-deoxy-D-gluconate 3 30.1 3.7E+02 0.008 24.5 9.1 85 61-149 13-99 (258)
396 PRK07454 short chain dehydroge 29.9 2.6E+02 0.0056 25.2 8.0 31 64-94 7-37 (241)
397 PRK15481 transcriptional regul 29.9 5.8E+02 0.013 25.6 11.2 73 225-304 120-194 (431)
398 PF02737 3HCDH_N: 3-hydroxyacy 29.9 78 0.0017 28.0 4.2 27 70-96 5-31 (180)
399 PRK09148 aminotransferase; Val 29.9 4.9E+02 0.011 25.9 10.5 75 225-304 67-145 (405)
400 PRK00779 ornithine carbamoyltr 29.8 1.9E+02 0.0041 28.0 7.2 54 72-128 161-215 (304)
401 PRK09860 putative alcohol dehy 29.7 3.3E+02 0.0072 27.2 9.2 14 363-377 88-101 (383)
402 PRK15454 ethanol dehydrogenase 29.6 3.8E+02 0.0083 26.9 9.6 14 363-377 106-119 (395)
403 TIGR03451 mycoS_dep_FDH mycoth 29.5 2.3E+02 0.0049 27.7 7.9 48 247-300 178-225 (358)
404 PRK08192 aspartate carbamoyltr 29.5 1.8E+02 0.0038 28.7 7.0 53 73-128 171-224 (338)
405 PRK12937 short chain dehydroge 29.4 3.5E+02 0.0076 24.2 8.8 56 64-120 6-61 (245)
406 cd08551 Fe-ADH iron-containing 29.4 3.8E+02 0.0083 26.4 9.6 24 351-377 70-93 (370)
407 PRK06077 fabG 3-ketoacyl-(acyl 29.4 3.6E+02 0.0078 24.3 8.9 87 61-149 4-92 (252)
408 PRK07454 short chain dehydroge 29.4 3.6E+02 0.0079 24.2 8.8 53 248-302 8-60 (241)
409 cd08301 alcohol_DH_plants Plan 29.3 2.1E+02 0.0046 28.0 7.7 49 247-301 189-237 (369)
410 PF00391 PEP-utilizers: PEP-ut 29.3 46 0.001 25.1 2.3 34 61-96 29-62 (80)
411 PRK06181 short chain dehydroge 29.3 3E+02 0.0066 25.1 8.4 30 65-94 3-32 (263)
412 PRK09126 hypothetical protein; 29.2 71 0.0015 31.6 4.3 29 65-94 5-33 (392)
413 TIGR02817 adh_fam_1 zinc-bindi 29.2 2.3E+02 0.0049 27.0 7.8 48 66-119 152-200 (336)
414 COG1611 Predicted Rossmann fol 29.1 1.3E+02 0.0028 27.3 5.6 50 346-399 32-81 (205)
415 PRK12935 acetoacetyl-CoA reduc 29.1 3.4E+02 0.0074 24.4 8.6 56 247-303 7-62 (247)
416 PRK05329 anaerobic glycerol-3- 29.1 6.3E+02 0.014 25.7 11.1 107 248-373 4-118 (422)
417 PLN02527 aspartate carbamoyltr 29.1 3.3E+02 0.0071 26.4 8.7 44 257-302 164-209 (306)
418 PRK06194 hypothetical protein; 29.1 3.7E+02 0.0081 24.9 9.1 55 64-120 7-61 (287)
419 cd08287 FDH_like_ADH3 formalde 29.0 3.2E+02 0.007 26.1 8.9 49 247-301 170-218 (345)
420 PRK07890 short chain dehydroge 29.0 3E+02 0.0064 25.0 8.2 31 64-94 6-36 (258)
421 PF02887 PK_C: Pyruvate kinase 28.9 1.9E+02 0.0042 23.2 6.2 42 54-97 8-49 (117)
422 COG1063 Tdh Threonine dehydrog 28.9 1.6E+02 0.0035 29.0 6.6 49 248-302 171-220 (350)
423 PRK13376 pyrB bifunctional asp 28.9 1.3E+02 0.0028 31.6 6.1 54 73-129 186-240 (525)
424 cd08260 Zn_ADH6 Alcohol dehydr 28.8 2.9E+02 0.0063 26.5 8.5 43 66-115 169-211 (345)
425 KOG1197|consensus 28.8 2.9E+02 0.0062 26.4 7.6 65 61-134 144-210 (336)
426 PRK08226 short chain dehydroge 28.7 3.2E+02 0.007 24.9 8.5 31 64-94 7-37 (263)
427 PF00890 FAD_binding_2: FAD bi 28.6 63 0.0014 32.3 3.8 29 249-278 2-30 (417)
428 cd08296 CAD_like Cinnamyl alco 28.6 3E+02 0.0065 26.3 8.5 47 247-300 165-211 (333)
429 PLN00175 aminotransferase fami 28.6 6E+02 0.013 25.4 11.0 73 226-303 91-167 (413)
430 PRK12938 acetyacetyl-CoA reduc 28.6 4.3E+02 0.0094 23.7 9.9 54 248-302 5-58 (246)
431 PF13450 NAD_binding_8: NAD(P) 28.6 77 0.0017 23.0 3.3 26 253-278 2-27 (68)
432 PRK12429 3-hydroxybutyrate deh 28.5 3.1E+02 0.0067 24.8 8.3 55 64-120 5-59 (258)
433 TIGR01316 gltA glutamate synth 28.5 1.8E+02 0.0038 29.8 7.1 52 65-117 274-327 (449)
434 COG1184 GCD2 Translation initi 28.4 1.3E+02 0.0028 29.2 5.6 46 232-277 130-177 (301)
435 PF06506 PrpR_N: Propionate ca 28.3 4E+02 0.0087 23.2 9.7 37 234-277 114-150 (176)
436 PF12831 FAD_oxidored: FAD dep 28.3 71 0.0015 32.4 4.2 32 66-98 2-33 (428)
437 cd08246 crotonyl_coA_red croto 28.3 1.4E+02 0.0031 29.5 6.3 47 66-118 197-243 (393)
438 PRK07035 short chain dehydroge 28.3 3.8E+02 0.0082 24.3 8.8 31 64-94 9-39 (252)
439 PRK07825 short chain dehydroge 28.3 4.7E+02 0.01 24.0 14.5 31 64-94 6-36 (273)
440 PRK05557 fabG 3-ketoacyl-(acyl 28.2 3.5E+02 0.0076 24.1 8.5 56 64-120 6-61 (248)
441 PRK07392 threonine-phosphate d 28.2 4.4E+02 0.0096 25.6 9.7 67 229-304 60-126 (360)
442 PF01494 FAD_binding_3: FAD bi 28.2 77 0.0017 30.3 4.3 32 66-98 4-35 (356)
443 PRK05557 fabG 3-ketoacyl-(acyl 28.1 3.7E+02 0.0081 23.9 8.7 56 247-303 6-61 (248)
444 PRK07478 short chain dehydroge 28.1 2.7E+02 0.0059 25.3 7.8 54 248-303 8-61 (254)
445 PRK15451 tRNA cmo(5)U34 methyl 28.1 1.3E+02 0.0029 27.8 5.7 36 364-399 58-93 (247)
446 PRK13243 glyoxylate reductase; 28.1 3.6E+02 0.0077 26.4 8.9 105 247-387 151-257 (333)
447 PRK06836 aspartate aminotransf 28.1 6E+02 0.013 25.1 10.9 74 226-304 73-149 (394)
448 PRK09730 putative NAD(P)-bindi 28.0 3.3E+02 0.0072 24.4 8.3 72 64-137 2-75 (247)
449 PRK06483 dihydromonapterin red 27.9 4.4E+02 0.0095 23.5 9.3 51 65-120 4-54 (236)
450 PLN02342 ornithine carbamoyltr 27.8 2.3E+02 0.0049 28.1 7.4 60 66-128 197-257 (348)
451 PRK05876 short chain dehydroge 27.7 4.4E+02 0.0095 24.6 9.3 54 247-302 7-60 (275)
452 PLN02527 aspartate carbamoyltr 27.6 1.6E+02 0.0035 28.5 6.3 47 73-120 163-210 (306)
453 PRK06172 short chain dehydroge 27.6 2.8E+02 0.0061 25.1 7.8 54 247-302 8-61 (253)
454 PRK06847 hypothetical protein; 27.5 72 0.0016 31.3 4.0 30 247-277 5-34 (375)
455 KOG0024|consensus 27.5 1.7E+02 0.0037 28.7 6.2 49 248-302 172-220 (354)
456 PRK08017 oxidoreductase; Provi 27.4 4.5E+02 0.0097 23.7 9.2 53 248-306 4-56 (256)
457 cd08289 MDR_yhfp_like Yhfp put 27.3 1.6E+02 0.0035 27.9 6.4 47 65-117 149-195 (326)
458 PRK08849 2-octaprenyl-3-methyl 27.3 90 0.002 30.9 4.6 29 65-94 5-33 (384)
459 cd08292 ETR_like_2 2-enoyl thi 27.2 4.2E+02 0.0092 24.9 9.2 32 247-278 141-172 (324)
460 PRK08936 glucose-1-dehydrogena 27.1 3.8E+02 0.0083 24.5 8.7 55 247-302 8-62 (261)
461 PRK10669 putative cation:proto 27.1 2E+02 0.0044 30.3 7.5 49 247-302 418-466 (558)
462 PRK08217 fabG 3-ketoacyl-(acyl 27.0 3E+02 0.0065 24.7 7.9 54 248-303 7-60 (253)
463 PRK07035 short chain dehydroge 27.0 4.7E+02 0.01 23.6 9.3 54 247-302 9-62 (252)
464 PRK05653 fabG 3-ketoacyl-(acyl 27.0 3.5E+02 0.0076 24.1 8.3 54 248-303 7-60 (246)
465 PRK10537 voltage-gated potassi 26.9 3.8E+02 0.0082 27.0 9.0 116 156-303 241-356 (393)
466 PRK12429 3-hydroxybutyrate deh 26.9 3.1E+02 0.0068 24.7 8.0 54 247-302 5-58 (258)
467 PRK12562 ornithine carbamoyltr 26.9 1.5E+02 0.0032 29.2 5.9 52 73-127 167-222 (334)
468 PRK08226 short chain dehydroge 26.9 4.2E+02 0.0092 24.1 8.9 53 247-302 7-59 (263)
469 PLN03050 pyridoxine (pyridoxam 26.9 1.6E+02 0.0035 27.6 5.9 52 65-116 62-117 (246)
470 PRK09126 hypothetical protein; 26.9 71 0.0015 31.6 3.8 28 249-277 6-33 (392)
471 PF01134 GIDA: Glucose inhibit 26.9 85 0.0018 31.6 4.3 28 66-94 2-29 (392)
472 PRK06194 hypothetical protein; 26.9 5.1E+02 0.011 24.0 9.7 55 247-303 7-61 (287)
473 TIGR00067 glut_race glutamate 26.8 3.2E+02 0.007 25.5 8.0 67 325-397 26-95 (251)
474 TIGR00658 orni_carb_tr ornithi 26.7 3.3E+02 0.0072 26.3 8.3 80 233-314 132-217 (304)
475 PLN02586 probable cinnamyl alc 26.7 2.8E+02 0.006 27.2 8.0 48 247-300 185-232 (360)
476 PRK05396 tdh L-threonine 3-deh 26.7 2.1E+02 0.0045 27.6 7.0 48 65-118 166-213 (341)
477 PRK06949 short chain dehydroge 26.6 3.6E+02 0.0079 24.4 8.4 32 64-95 10-41 (258)
478 PF01134 GIDA: Glucose inhibit 26.6 75 0.0016 32.0 3.8 28 249-277 2-29 (392)
479 PF08659 KR: KR domain; Inter 26.5 3.3E+02 0.0072 23.7 7.7 55 66-120 3-59 (181)
480 PRK12939 short chain dehydroge 26.5 3.1E+02 0.0068 24.6 7.9 54 247-302 8-61 (250)
481 COG1184 GCD2 Translation initi 26.5 3.9E+02 0.0086 25.9 8.5 60 61-120 117-177 (301)
482 PRK09754 phenylpropionate diox 26.5 1.7E+02 0.0037 29.2 6.5 53 247-300 145-204 (396)
483 PF13738 Pyr_redox_3: Pyridine 26.5 84 0.0018 27.6 3.9 33 246-279 167-199 (203)
484 PRK12826 3-ketoacyl-(acyl-carr 26.4 4.3E+02 0.0094 23.6 8.8 54 247-302 7-60 (251)
485 PRK08085 gluconate 5-dehydroge 26.3 4.3E+02 0.0094 23.9 8.9 86 61-149 7-94 (254)
486 PRK08589 short chain dehydroge 26.3 4.3E+02 0.0094 24.4 8.9 52 248-302 8-59 (272)
487 PRK05866 short chain dehydroge 26.3 3.7E+02 0.0081 25.4 8.6 86 61-149 38-125 (293)
488 PRK12266 glpD glycerol-3-phosp 26.3 85 0.0018 32.7 4.4 29 65-94 8-36 (508)
489 PRK04284 ornithine carbamoyltr 26.3 1.6E+02 0.0036 28.9 6.1 52 73-127 166-221 (332)
490 smart00460 TGc Transglutaminas 26.2 86 0.0019 22.1 3.2 24 72-95 9-32 (68)
491 PRK12810 gltD glutamate syntha 26.2 7.2E+02 0.016 25.4 18.8 31 65-96 145-175 (471)
492 PRK07832 short chain dehydroge 26.2 2.6E+02 0.0055 25.9 7.3 84 64-149 1-86 (272)
493 PTZ00354 alcohol dehydrogenase 26.2 1.8E+02 0.0038 27.6 6.4 48 66-119 144-191 (334)
494 PF02737 3HCDH_N: 3-hydroxyacy 26.2 86 0.0019 27.7 3.8 27 253-279 5-31 (180)
495 PRK12744 short chain dehydroge 26.2 5E+02 0.011 23.6 9.8 55 248-302 10-66 (257)
496 PRK03692 putative UDP-N-acetyl 26.1 3.2E+02 0.0069 25.6 7.7 21 352-374 148-168 (243)
497 TIGR02818 adh_III_F_hyde S-(hy 26.1 2.6E+02 0.0056 27.5 7.6 49 247-301 187-235 (368)
498 TIGR00561 pntA NAD(P) transhyd 26.0 1.8E+02 0.0038 30.5 6.5 50 247-303 165-214 (511)
499 cd08300 alcohol_DH_class_III c 26.0 2.5E+02 0.0053 27.6 7.5 49 247-301 188-236 (368)
500 PLN02740 Alcohol dehydrogenase 26.0 2.5E+02 0.0053 27.8 7.5 49 247-301 200-248 (381)
No 1
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=6.7e-43 Score=345.89 Aligned_cols=210 Identities=54% Similarity=0.915 Sum_probs=189.0
Q ss_pred eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|.+|||+.+++|++.+++.+||+|+|++|||||||+|+++.+++.+++.|++++|+|+|+||||+|+|++|+++|++|+
T Consensus 55 ~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~Gl~c~ 134 (397)
T PRK04346 55 VGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLECV 134 (397)
T ss_pred cCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCcEE
Confidence 57899999999999888779999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE 352 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E 352 (410)
||||+.+.++++.|+.+|+.+||+|+.|+.+. ++++++++.+.+.++..+.+|++++..|||||+.++.+||+|+|.|
T Consensus 135 I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~E 214 (397)
T PRK04346 135 IYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEE 214 (397)
T ss_pred EEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHH
Confidence 99998766777789999999999999998653 8888888888765543457899999999999998889999999999
Q ss_pred HHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCc
Q psy11239 353 IHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRT 404 (410)
Q Consensus 353 i~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~ 404 (410)
|++|+. ..+..||+||+|||+||+++|++.+|++. ++|||||||.|+.+.++
T Consensus 215 i~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~~~~v~iigVE~~G~~~~~~ 268 (397)
T PRK04346 215 AKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGVEAAGKGLETG 268 (397)
T ss_pred HHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhhCCCCeEEEEecCCCccccc
Confidence 999997 34668999999999999999999988754 89999999999866544
No 2
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4.8e-41 Score=333.19 Aligned_cols=204 Identities=52% Similarity=0.861 Sum_probs=184.1
Q ss_pred eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|.+|||+++++|++.+++.+||+|+|++|||||||+|.++.+++.+++.|++++|+|+|+||||+|+|++|+++|++|+
T Consensus 59 ~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~aaa~~Gl~~~ 138 (402)
T PRK13028 59 VGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATATAAALFGLECE 138 (402)
T ss_pred CCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCCEE
Confidence 57899999999999888678999999999999999999999999999999998899889999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE 352 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E 352 (410)
||||+.+++++..|+++|+++||+|+.++.+ .++++++++.+.+.++.++.+|++++..|||||+.++..|++|+|.|
T Consensus 139 I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~E 218 (402)
T PRK13028 139 IYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEE 218 (402)
T ss_pred EEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHH
Confidence 9999877777778999999999999999864 39999999877655443357899999999999988888999999999
Q ss_pred HHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhc-CCCeEEEEccCC
Q psy11239 353 IHQQLN-FNFYNKKYILACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398 (410)
Q Consensus 353 i~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~-~~~~vigVe~~g 398 (410)
|.+|+. ..+..||+||+|||+||+++|++.+|++ +++|||||||.|
T Consensus 219 i~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~~~~v~iigVE~~G 266 (402)
T PRK13028 219 AREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLDDESVRLVGVEPAG 266 (402)
T ss_pred HHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHhCCCceEEEEecCC
Confidence 999986 3456799999999999999999999985 489999999999
No 3
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=8.1e-41 Score=331.58 Aligned_cols=210 Identities=50% Similarity=0.887 Sum_probs=184.7
Q ss_pred eecccccccccccccccc-----CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHc
Q psy11239 195 LGRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLL 269 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~~~-----~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~ 269 (410)
.|.+|||+.+++|++.++ +.+||+|+|++|||||||+|.++.+++.+++.+++++|+++|+||||+|+|++|+++
T Consensus 63 vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~~~vIaesgaGNhG~AlA~aaa~~ 142 (410)
T PLN02618 63 VGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARF 142 (410)
T ss_pred cCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc
Confidence 468999999999998774 589999999999999999999999999999999999999889999999999999999
Q ss_pred CCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhh
Q psy11239 270 NLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQS 347 (410)
Q Consensus 270 G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (410)
|++|+||||+.+.+++..|+.+|+.+||+|+.++.++ +++++.++.+.+.++.++.+|++++..|||||+.++..+++
T Consensus 143 Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~ 222 (410)
T PLN02618 143 GLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHS 222 (410)
T ss_pred CCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhH
Confidence 9999999998666667789999999999999997643 88998777765554434578999999999999877889999
Q ss_pred hHHHHHHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCc
Q psy11239 348 IIGYEIHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRT 404 (410)
Q Consensus 348 t~g~Ei~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~ 404 (410)
|+|.||.+|+. ..+..||+||+|||+||+++|++.+|++. ++|||||||+|+.+..+
T Consensus 223 tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~~~~v~ligVEa~G~~~~~~ 281 (410)
T PLN02618 223 VIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFIDDEDVRLIGVEAAGFGLDSG 281 (410)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHhCCCceEEEEEeCCCccccc
Confidence 99999999984 44567999999999999999999999754 89999999999855433
No 4
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=2.3e-41 Score=334.99 Aligned_cols=210 Identities=51% Similarity=0.836 Sum_probs=183.2
Q ss_pred hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT 81 (410)
Q Consensus 2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~ 81 (410)
++++++++.+.++||||+++++|++.+|+.+||+|+|++|||||||+|+++.+++.+++++++++|+++|+||||+|+|+
T Consensus 45 ~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~ 124 (397)
T PRK04346 45 AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATAT 124 (397)
T ss_pred HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHH
Confidence 56788899999999999999999999888999999999999999999999999999999998889998899999999999
Q ss_pred HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239 82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV 159 (410)
Q Consensus 82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 159 (410)
+|+++|++|+||||+.+.+++..|..+|+.|||+|+.|+.+ ++++++.++.+.+..+..+.+|++++..++|||+..+
T Consensus 125 ~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v 204 (397)
T PRK04346 125 AAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMV 204 (397)
T ss_pred HHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHH
Confidence 99999999999999965444457889999999999999865 5888888888876665556789999988999997656
Q ss_pred cccchhHHHHHHHhhhh-cCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 160 RDFQSIIGYEIHQQLNF-NFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 160 ~~g~~ti~~EI~~q~~~-~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
.+||+|++.||.+|+.. .+..||+||+|||+||+++|+..+|.+ .+.++|+.
T Consensus 205 ~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-------~~~v~iig 257 (397)
T PRK04346 205 RDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-------DESVRLIG 257 (397)
T ss_pred HHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-------CCCCeEEE
Confidence 78999999999999742 245799999999999999999888854 13567774
No 5
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-40 Score=304.93 Aligned_cols=212 Identities=52% Similarity=0.903 Sum_probs=203.1
Q ss_pred eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
+|.+|||...++|+++. +.+||+||||+|+||++|+..++.++++|++.|++++|.|.+.|.||.|.|.+|+++|++|+
T Consensus 53 ~GRptpLy~a~~Lt~~~-gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~ 131 (396)
T COG0133 53 AGRPTPLYFAERLTEHL-GAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECV 131 (396)
T ss_pred CCCCChhHHHHHHHHhh-CceEEEehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceE
Confidence 68999999999999998 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE 352 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E 352 (410)
|||-..+.+||+.|+.+|+.+||+|+.|.+|+ ++|++++|++.|..+-...+|++++..+|||||.++...|+.+|.|
T Consensus 132 iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E 211 (396)
T COG0133 132 IYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEE 211 (396)
T ss_pred EEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHH
Confidence 99998899999999999999999999999888 9999999999999988889999999999999999999999999999
Q ss_pred HHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCccCC
Q psy11239 353 IHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRTASR 407 (410)
Q Consensus 353 i~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~~~~ 407 (410)
..+|+. ..|..||+||.|||+|+++.|++..|.+. ++++||||+.|..+.+++++
T Consensus 212 ~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~d~~V~LiGvEaaG~Gi~t~~Ha 268 (396)
T COG0133 212 AKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGVEAAGKGIETGKHA 268 (396)
T ss_pred HHHHHHHHhCCCCCeEEEeccCCcchhhhcccccCCCCceEEEeccCcCccCCCccc
Confidence 999987 45789999999999999999999988875 99999999999999988875
No 6
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=9.8e-39 Score=332.92 Aligned_cols=211 Identities=47% Similarity=0.838 Sum_probs=183.5
Q ss_pred eecccccccccccccc----cc-CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHc
Q psy11239 195 LGRPTPIYYCKNISNI----LK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLL 269 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~----~~-~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~ 269 (410)
.|.+|||+++++|++. .+ +.+||+|+|++|||||||+|.++.+++.+++.|++++|+|+|+||||+|+|++|+++
T Consensus 323 iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~ 402 (695)
T PRK13802 323 VGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAML 402 (695)
T ss_pred CCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHc
Confidence 5789999999988643 44 479999999999999999999999999999999988888999999999999999999
Q ss_pred CCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhh
Q psy11239 270 NLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQS 347 (410)
Q Consensus 270 G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (410)
|++|+||||+.+..++..|+.+|+.+||+|+.++.++ ++++++++.+.+.++..+.+|+++++.|+|||+.++.+|++
T Consensus 403 Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~ 482 (695)
T PRK13802 403 GLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQK 482 (695)
T ss_pred CCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHH
Confidence 9999999998655556789999999999999997544 78888777665554323467889999999999888889999
Q ss_pred hHHHHHHHhhhh-cC-CCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCcc
Q psy11239 348 IIGYEIHQQLNF-NF-YNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRTA 405 (410)
Q Consensus 348 t~g~Ei~~q~~~-~~-~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~~ 405 (410)
|+|.||++|+.+ .| ..||+||+|||+||+++|++.+|++. ++|||||||.++....|.
T Consensus 483 tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~~~~vkligVE~~g~g~~~g~ 543 (695)
T PRK13802 483 IIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLDDERVNLYGYEAGGNGPESGK 543 (695)
T ss_pred HHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHhCCCceEEEEEecCCCccccc
Confidence 999999999963 23 27999999999999999999999764 899999999998766553
No 7
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=4.9e-40 Score=325.96 Aligned_cols=210 Identities=47% Similarity=0.778 Sum_probs=180.2
Q ss_pred hhhhhhhcCCCCCCCcCccccccccccC-----CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHH
Q psy11239 2 EWFDLFYNPKKGRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHG 76 (410)
Q Consensus 2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~-----~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g 76 (410)
++++++++.+.+++|||+++++|++.+| +.+||+|+|++|||||||+|+++.+++++++++++++|+++|+||||
T Consensus 53 ~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~~~vIaesgaGNhG 132 (410)
T PLN02618 53 EELAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHG 132 (410)
T ss_pred HHHHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCCCEEEEEcCcHHHH
Confidence 5677888888989999999999999874 68999999999999999999999998889999988899987899999
Q ss_pred HHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeC--CCHHHHHHHHHHHHhhcccCCcccccccccCcc
Q psy11239 77 VSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY--GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHP 154 (410)
Q Consensus 77 ~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 154 (410)
+|+|++|+++|++|+||||+.+.+++..|..+|+.|||+|+.|+. +++++++.++.+.+.++..+.+|++++..++||
T Consensus 133 ~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P 212 (410)
T PLN02618 133 VATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 212 (410)
T ss_pred HHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCC
Confidence 999999999999999999997554456789999999999999964 368898877776665554567899999999999
Q ss_pred ccccccccchhHHHHHHHhh-hhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 155 YPTIVRDFQSIIGYEIHQQL-NFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 155 ~~~~~~~g~~ti~~EI~~q~-~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
|+.++.++++|+|.||.+|. +..+..||+||+|||+||+++|+..+|.. .+.++|+.
T Consensus 213 ~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-------~~~v~lig 270 (410)
T PLN02618 213 YPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-------DEDVRLIG 270 (410)
T ss_pred CHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-------CCCceEEE
Confidence 97667899999999998886 22234799999999999999999888853 13577774
No 8
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=5.5e-40 Score=325.61 Aligned_cols=210 Identities=48% Similarity=0.732 Sum_probs=181.5
Q ss_pred hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT 81 (410)
Q Consensus 2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~ 81 (410)
++++++++.+..+||||+++++|++.+|+.+||+|+|++|||||||+|+++.+++.+++++++.+|+++||||||+|+|+
T Consensus 49 ~~~~~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~ 128 (402)
T PRK13028 49 AELRYLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATAT 128 (402)
T ss_pred HHHHHHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHH
Confidence 56788899999999999999999999878899999999999999999999999999999998888988889999999999
Q ss_pred HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239 82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV 159 (410)
Q Consensus 82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 159 (410)
+|+++|++|+||||+.+++++..|..+|+.|||+|+.|+.+ +++++++++.+.+.++..+.+|++++..++|||..++
T Consensus 129 aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v 208 (402)
T PRK13028 129 AAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMV 208 (402)
T ss_pred HHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHH
Confidence 99999999999999976655457899999999999999853 5899999887766555456788888888899996555
Q ss_pred cccchhHHHHHHHhhhh-cCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 160 RDFQSIIGYEIHQQLNF-NFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 160 ~~g~~ti~~EI~~q~~~-~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
.++|+|++.||.+|+.. .+..||+||+|||+||+++|+..+|.+. +.++|+.
T Consensus 209 ~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~~-------~~v~iig 261 (402)
T PRK13028 209 RDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLDD-------ESVRLVG 261 (402)
T ss_pred HHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHhC-------CCceEEE
Confidence 68999999999999632 2346999999999999999999988641 2566764
No 9
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-39 Score=309.62 Aligned_cols=187 Identities=26% Similarity=0.340 Sum_probs=166.6
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-H-cCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-F-LKKKRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~-~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
..|||..++.|++.. +.+||+|+|++|++||||.|++++.+.... + +...++| ++|+||||+++|++|+++|++++
T Consensus 24 ~~TPL~~s~~Ls~~~-g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~gVi-aaSaGNHaQGvA~aa~~lGi~a~ 101 (347)
T COG1171 24 NPTPLQRSPSLSERL-GAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVI-AASAGNHAQGVAYAAKRLGIKAT 101 (347)
T ss_pred cCCCcccchhhHHhh-CceEEEeeccCcccccchhhhHHHHHHhcChhhhhcCceE-EecCCcHHHHHHHHHHHhCCCEE
Confidence 589999999999986 899999999999999999999999987654 3 3445555 49999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 353 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei 353 (410)
||||..++. .|++.+|.|||||+.+. .+|+++...+.++++++ +..|+ |||++. +++||+|++.||
T Consensus 102 IvMP~~tp~---~Kv~a~r~~GaeVil~g-~~~dda~~~a~~~a~~~--G~~~i-------~pfD~p~viAGQGTi~lEi 168 (347)
T COG1171 102 IVMPETTPK---IKVDATRGYGAEVILHG-DNFDDAYAAAEELAEEE--GLTFV-------PPFDDPDVIAGQGTIALEI 168 (347)
T ss_pred EEecCCCcH---HHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHHc--CCEEe-------CCCCCcceeecccHHHHHH
Confidence 999986654 88999999999999973 33999999999999988 67888 999777 999999999999
Q ss_pred HHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCc
Q psy11239 354 HQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISK 401 (410)
Q Consensus 354 ~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~ 401 (410)
++|++ ..||+||+|+|+||+++|++.+++.. ++|||||||++++.
T Consensus 169 leq~~---~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~ 215 (347)
T COG1171 169 LEQLP---DLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPS 215 (347)
T ss_pred HHhcc---ccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChH
Confidence 99996 33799999999999999999999865 89999999999874
No 10
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.3e-38 Score=317.00 Aligned_cols=207 Identities=52% Similarity=0.913 Sum_probs=175.7
Q ss_pred eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|.+|||+++++|++..++.+||+|+|++|||||||+|.+..++..+++.|.+++|+++|+||||+++|++|+++|++|+
T Consensus 47 ~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~alA~~a~~~Gl~~~ 126 (385)
T TIGR00263 47 AGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCE 126 (385)
T ss_pred CCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCEE
Confidence 45799999999998887558999999999999999999999999999888888888889999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE 352 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E 352 (410)
||||+.+.++++.|+++|+.+||+|+.++.+ .+++++.++.+.+.++.++.+|+.+++.|++||++++..|++|+|.|
T Consensus 127 Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~E 206 (385)
T TIGR00263 127 VYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEE 206 (385)
T ss_pred EEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHH
Confidence 9999754454457889999999999999743 27777666665543332346788788888899987788999999999
Q ss_pred HHHhhhhc-CCCCCEEEEccCchhHHHHHHHHHhc-CCCeEEEEccCCCCc
Q psy11239 353 IHQQLNFN-FYNKKYILACVGGGSNALGIFYTFIN-SNFKLVAIESGGISK 401 (410)
Q Consensus 353 i~~q~~~~-~~~~d~iv~~vGtGg~~~Gi~~~~~~-~~~~vigVe~~g~~~ 401 (410)
|++|+.+. +..||+||+|+|+||+++|++.++.. +++|||||||+++..
T Consensus 207 i~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~~~~~~iigVe~~gs~~ 257 (385)
T TIGR00263 207 AKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFIDDPSVQLIGVEAGGLGI 257 (385)
T ss_pred HHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhhCCCCeEEEEEeCCCcc
Confidence 99998632 34699999999999999999987754 499999999999743
No 11
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-39 Score=301.14 Aligned_cols=245 Identities=20% Similarity=0.168 Sum_probs=187.6
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhc---CCceEEEeCccHHHHHHHHHHHHcCC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGAGMHGVSTATSCCLLNL 88 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~---~~~~v~~~ssGN~g~a~A~~a~~~G~ 88 (410)
...+|||++++++.... +++||+|+|++||+||.|||.++.++..+++.+ ++.+|+|+||||+|+++|+.|+.+|+
T Consensus 8 ~iG~TPlvrL~~~~~~~-~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy 86 (300)
T COG0031 8 LIGNTPLVRLNRLSPGT-GVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAKGY 86 (300)
T ss_pred HhCCCCcEeecccCCCC-CceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCC
Confidence 45799999999998774 789999999999999999998887777777655 56799999999999999999999999
Q ss_pred cEEEEeccCCccccchhHHHHHhcCCEEEEEeC--CCHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239 89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY--GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS 164 (410)
Q Consensus 89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~ 164 (410)
|+++|||+..+ ++|+++|++|||+|+.++. +.+..+.+++.+++++.+ +..+ +.+||+||. .+|+.
T Consensus 87 ~~iivmP~~~S---~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p-~~~~------~~~Qf~NpaN~~aH~~ 156 (300)
T COG0031 87 RLIIVMPETMS---QERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIP-GYAV------WLNQFENPANPEAHYE 156 (300)
T ss_pred cEEEEeCCCCC---HHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCC-CceE------chhhcCCCccHHHHHh
Confidence 99999999888 5999999999999999985 338889999999988763 2222 355666663 58999
Q ss_pred hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCC-----chhhHH-------
Q psy11239 165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFT-----GAHKMN------- 232 (410)
Q Consensus 165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt-----gS~K~R------- 232 (410)
|++.||++|.+ + .+|+||+++|||||++|+ ...|++..|.++++.-.-...+. |++|++
T Consensus 157 tT~~EI~~~~~--g-~~d~fVagvGTGGTitGv------ar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~i 227 (300)
T COG0031 157 TTGPEIWQQTD--G-KVDAFVAGVGTGGTITGV------ARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFV 227 (300)
T ss_pred hhHHHHHHHhC--C-CCCEEEEeCCcchhHHHH------HHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcC
Confidence 99999999954 3 499999999999999999 66777777778887654332211 244443
Q ss_pred ------------------HHHHHHH-HHHHcCCCceEEecCchHHHHHHHHHHHHcC--CcEEEEEcC
Q psy11239 233 ------------------NSIAQSL-LAKFLKKKRIICETGAGMHGVSTATSCCLLN--LESIIYIGE 279 (410)
Q Consensus 233 ------------------~a~~~~~-~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G--~~~~vv~p~ 279 (410)
.++.+.. ++++ .++++..|||-.-.+.-..|++++ -..+++.|+
T Consensus 228 p~~~~~~~iD~v~~V~d~~A~~~~r~La~~---eGilvG~SsGA~~~aa~~~a~~~~~g~~IVti~pD 292 (300)
T COG0031 228 PENLDLDLIDEVIRVSDEEAIATARRLARE---EGLLVGISSGAALAAALKLAKELPAGKTIVTILPD 292 (300)
T ss_pred CcccccccCceEEEECHHHHHHHHHHHHHH---hCeeecccHHHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 2222222 2222 456677888855555556677774 455556664
No 12
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.5e-38 Score=330.65 Aligned_cols=206 Identities=54% Similarity=0.934 Sum_probs=182.9
Q ss_pred eeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|.+|||+++++|++.. +.+||+|+|++|||||||+|.++.+++.+++.+.+++|+++|+||||+|+|++|+++|++|+
T Consensus 268 ~grpTPL~~~~~Ls~~~-G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~~aa~~Gl~~~ 346 (610)
T PRK13803 268 AGRPTPLTEAKRLSDIY-GARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACALFGLKCT 346 (610)
T ss_pred CCCCCcceeHHHHHHhh-CCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHHcCCcEE
Confidence 57899999999998877 68999999999999999999999999999999998899889999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE 352 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E 352 (410)
||||+.+.+++..|+.+|+.+||+|+.++.+. ++++++++.+.+..+.++.+|++++..|+|||+.++..|++|+|.|
T Consensus 347 I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~E 426 (610)
T PRK13803 347 IFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEE 426 (610)
T ss_pred EEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHH
Confidence 99998766666789999999999999997543 8888888777663332357888888888999988888899999999
Q ss_pred HHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCc
Q psy11239 353 IHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISK 401 (410)
Q Consensus 353 i~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~ 401 (410)
|++|+. ..+..||+||+|+||||+++|++.+|++. ++|||||||.++.+
T Consensus 427 i~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~~~~v~iigVE~~g~~~ 477 (610)
T PRK13803 427 AKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLDDPSVKLIGVEAGGKGV 477 (610)
T ss_pred HHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhhCCCceEEEEecCCCCc
Confidence 999996 34567999999999999999999999754 89999999999754
No 13
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-38 Score=303.56 Aligned_cols=252 Identities=22% Similarity=0.245 Sum_probs=189.0
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-H-hcCCceEEEeCccHHHHHHHHHHHHcCCc
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-F-LKKKRIICETGAGMHGVSTATSCCLLNLE 89 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~-~~~~~~v~~~ssGN~g~a~A~~a~~~G~~ 89 (410)
...+|||++++.|++.+ +.+||+|+|++||+||||.|++...+.... + +.+.++|+ +|+||||+++|++|+++|+|
T Consensus 22 ~~~~TPL~~s~~Ls~~~-g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~gVia-aSaGNHaQGvA~aa~~lGi~ 99 (347)
T COG1171 22 VVNPTPLQRSPSLSERL-GAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVIA-ASAGNHAQGVAYAAKRLGIK 99 (347)
T ss_pred cccCCCcccchhhHHhh-CceEEEeeccCcccccchhhhHHHHHHhcChhhhhcCceEE-ecCCcHHHHHHHHHHHhCCC
Confidence 66799999999999996 899999999999999999998865544322 3 34555666 59999999999999999999
Q ss_pred EEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHH
Q psy11239 90 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGY 168 (410)
Q Consensus 90 ~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~ 168 (410)
++||||..+| ..|.+.+|.|||||+++. .+|+++.+.+.++++++ +..+.+|||+| +++||+|++.
T Consensus 100 a~IvMP~~tp---~~Kv~a~r~~GaeVil~g-~~~dda~~~a~~~a~~~---------G~~~i~pfD~p~viAGQGTi~l 166 (347)
T COG1171 100 ATIVMPETTP---KIKVDATRGYGAEVILHG-DNFDDAYAAAEELAEEE---------GLTFVPPFDDPDVIAGQGTIAL 166 (347)
T ss_pred EEEEecCCCc---HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHHc---------CCEEeCCCCCcceeecccHHHH
Confidence 9999999999 489999999999999997 67999999999999887 34568999988 6999999999
Q ss_pred HHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCc
Q psy11239 169 EIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKR 248 (410)
Q Consensus 169 EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~ 248 (410)
||++|+.. .||+|+||+|+||+++|+.+-+.. ..|.++|+ ...|.++.-... +.+.|...
T Consensus 167 Eileq~~~---~~d~v~vpvGGGGLisGia~~~k~------~~p~~~vI----GVEp~~a~~~~~-------Sl~~G~~~ 226 (347)
T COG1171 167 EILEQLPD---LPDAVFVPVGGGGLISGIATALKA------LSPEIKVI----GVEPEGAPSMYA-------SLKAGKIV 226 (347)
T ss_pred HHHHhccc---cCCEEEEecCccHHHHHHHHHHHH------hCCCCeEE----EEeeCCChHHHH-------HHHcCCce
Confidence 99999752 379999999999999999665532 23467777 445544432222 22334322
Q ss_pred eEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc
Q psy11239 249 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSN 320 (410)
Q Consensus 249 ~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~ 320 (410)
++....++.+-++|. . .+. ......++.+--+++.|+ ++.+..+...+-+
T Consensus 227 -~~~~~~~tiaDG~av-------------~--~~g--~~tf~i~~~~vd~~v~V~----e~ei~~am~~l~~ 276 (347)
T COG1171 227 -VVLPDVGTIADGLAV-------------K--RPG--DLTFEILRELVDDIVLVD----EDEICAAMRDLFE 276 (347)
T ss_pred -eecCCCCcccccccc-------------C--CCC--HHHHHHHHHcCCcEEEEC----HHHHHHHHHHHHh
Confidence 222335555444431 1 111 245668888888888885 4444445554443
No 14
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-38 Score=294.20 Aligned_cols=195 Identities=22% Similarity=0.185 Sum_probs=171.4
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|||+++.++.... +++||+|+|.+||+||.|||.+++++..|++.|. +.+|+|+||||+|++||++|+.+|++++
T Consensus 11 ~TPlvrL~~~~~~~-~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy~~i 89 (300)
T COG0031 11 NTPLVRLNRLSPGT-GVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRLI 89 (300)
T ss_pred CCCcEeecccCCCC-CceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCCcEE
Confidence 79999999887665 6899999999999999999999999999998774 6789999999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeC-CC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQY-GN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE 352 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~-g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E 352 (410)
+|||+..+. .++++|++|||+|+.++. +. +..+++++.+++++. ++.+++++|+.|| .+..+|+.|+|.|
T Consensus 90 ivmP~~~S~---er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~-p~~~~~~~Qf~Np----aN~~aH~~tT~~E 161 (300)
T COG0031 90 IVMPETMSQ---ERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEI-PGYAVWLNQFENP----ANPEAHYETTGPE 161 (300)
T ss_pred EEeCCCCCH---HHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhC-CCceEchhhcCCC----ccHHHHHhhhHHH
Confidence 999986544 788999999999999986 33 888999999888876 3346665566642 2357899999999
Q ss_pred HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCc
Q psy11239 353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRT 404 (410)
Q Consensus 353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~ 404 (410)
|++|+. ..+|+||+++|||||++|++++||+. ++|+++|||++|.++++
T Consensus 162 I~~~~~---g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~ 212 (300)
T COG0031 162 IWQQTD---GKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSG 212 (300)
T ss_pred HHHHhC---CCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCC
Confidence 999996 45999999999999999999999965 89999999999999874
No 15
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.6e-37 Score=307.66 Aligned_cols=208 Identities=54% Similarity=0.933 Sum_probs=174.7
Q ss_pred eccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 196 G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
+.+|||++++++...+++.+||+|+|++||+||||+|.++.++..+.+.|.+.+|+++|+||||+++|++|+.+|++|+|
T Consensus 32 ~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~~~vv~~~ssGN~g~alA~~a~~~G~~~~i 111 (365)
T cd06446 32 GRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRVIAETGAGQHGVATATACALFGLECEI 111 (365)
T ss_pred CCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHhCCCeEE
Confidence 46999999999987776789999999999999999999999999899999988888789999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCC--CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei 353 (410)
|||+.++++++.|+.+|+.+||+|+.++.. .+++++.++.+...++.++.+|++++..+++||+.++.+|++|+|.||
T Consensus 112 vvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI 191 (365)
T cd06446 112 YMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEA 191 (365)
T ss_pred EEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHH
Confidence 999754433447888999999999999742 367776666655444322356766666556888777899999999999
Q ss_pred HHhhhhc-CCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCC
Q psy11239 354 HQQLNFN-FYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKR 403 (410)
Q Consensus 354 ~~q~~~~-~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~ 403 (410)
++|+++. +..||+||+|+|||||++|++.+++.. ++|||||||++++.+.
T Consensus 192 ~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~~~~~vigVep~gs~~~~ 243 (365)
T cd06446 192 KKQILEKEGELPDVVIACVGGGSNAAGLFYPFINDKDVKLIGVEAGGCGLET 243 (365)
T ss_pred HHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhCCCceEEEEcCCCCcccc
Confidence 9999733 257999999999999999999988654 9999999999988764
No 16
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.9e-38 Score=329.36 Aligned_cols=202 Identities=47% Similarity=0.785 Sum_probs=174.8
Q ss_pred hhhhhhhcCCCCCCCcCccccccccc----cC-CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHH
Q psy11239 2 EWFDLFYNPKKGRPTPIYYCKNISNI----LK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHG 76 (410)
Q Consensus 2 ~~~~~~~~~~~~~~TPl~~~~~l~~~----~~-~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g 76 (410)
++|+++++.|.++||||+++++|++. +| +.+||+|+|++|||||||||+++.+++.+++.++..+|+++||||||
T Consensus 313 ~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG 392 (695)
T PRK13802 313 KELATLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHG 392 (695)
T ss_pred HHHHHHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHH
Confidence 56788899999999999999998753 55 48999999999999999999999999999999988889888999999
Q ss_pred HHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCcc
Q psy11239 77 VSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHP 154 (410)
Q Consensus 77 ~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 154 (410)
+|+|++|+++|++|+||||+.+.++++.|..+|+.|||+|+.++.+ +++++++++.+.+.++..+.+|++++..++||
T Consensus 393 ~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P 472 (695)
T PRK13802 393 VATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHP 472 (695)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCC
Confidence 9999999999999999999976555578999999999999999854 47888877777655543456788899888999
Q ss_pred ccccccccchhHHHHHHHhhhhc-C-CCccEEEEecCCCCceeeccccccc
Q psy11239 155 YPTIVRDFQSIIGYEIHQQLNFN-F-YNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 155 ~~~~~~~g~~ti~~EI~~q~~~~-~-~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
|+.++.+||+|+|+||++|+... + ..||+||+|||+||+++|+..+|..
T Consensus 473 ~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~ 523 (695)
T PRK13802 473 FPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD 523 (695)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh
Confidence 96656799999999999997421 2 2699999999999999999999854
No 17
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=4.3e-37 Score=296.35 Aligned_cols=191 Identities=16% Similarity=0.171 Sum_probs=161.8
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|||+++++|.... +.+||+|+|++|||||||+|++.+++..+.+.|. +..|+++|+||||+++|++|+.+|++|+
T Consensus 12 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~ 90 (296)
T PRK11761 12 NTPLVKLQRLPPDR-GNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMK 90 (296)
T ss_pred CCceEeccccccCC-CCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEE
Confidence 89999999888766 6899999999999999999999999999988775 2345669999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHHccCCCceEEecCCCCCCCCh--hHHHhhhhhHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYP--TIVRDFQSIIGY 351 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~t~g~ 351 (410)
||||+..++ .|+++|+.+||+|+.++.. +++++.+.+.++.++. +.+|+ +||+ ++...||+|+|.
T Consensus 91 i~~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~--~~~~~-------~~~~n~~~~~~~~~t~~~ 158 (296)
T PRK11761 91 LIMPENMSQ---ERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG--EGKVL-------DQFANPDNPLAHYETTGP 158 (296)
T ss_pred EEECCCCCH---HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc--CCEec-------CCCCChhhHHHHhhchHH
Confidence 999986543 7899999999999999753 4888877777776664 44544 5553 235668999999
Q ss_pred HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCc
Q psy11239 352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRT 404 (410)
Q Consensus 352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~ 404 (410)
||++|++ ..+|+||+|+||||+++|++++|++. ++|||||||++++...|
T Consensus 159 Ei~eq~~---~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g 210 (296)
T PRK11761 159 EIWRQTE---GRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG 210 (296)
T ss_pred HHHHhcC---CCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC
Confidence 9999995 36899999999999999999999974 89999999998766543
No 18
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=2.2e-37 Score=309.27 Aligned_cols=187 Identities=26% Similarity=0.373 Sum_probs=163.8
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHc-CCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL-KKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~-g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..||++++++|+... +++||+|+|++|||||||+|++.+.+..+.+. +.+++ +++|+||||+++|++|+++|++|+|
T Consensus 19 ~~TPl~~~~~Ls~~~-g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~~gV-V~aSaGNhg~avA~aa~~~Gi~~~I 96 (403)
T PRK08526 19 NKTPFAYAPFLSKIS-GAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGV-IAASAGNHAQGVAISAKKFGIKAVI 96 (403)
T ss_pred CCCCccchHHHHHHh-CCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcCCEE-EEECccHHHHHHHHHHHHcCCCEEE
Confidence 489999999998877 68999999999999999999999998766543 34555 4599999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH 354 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~ 354 (410)
|||+..+. .|+..++.|||+|+.++ ++++++...+.+.+++. +.+|+ |||++. +.+||+|+|.||+
T Consensus 97 vmP~~~p~---~k~~~~r~~GA~Vv~~g-~~~~~a~~~a~~~a~~~--g~~~v-------~p~~~~~~i~G~gtia~EI~ 163 (403)
T PRK08526 97 VMPEATPL---LKVSGTKALGAEVILKG-DNYDEAYAFALEYAKEN--NLTFI-------HPFEDEEVMAGQGTIALEML 163 (403)
T ss_pred EEcCCCCH---HHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEee-------CCCCCHHHHhhhHHHHHHHH
Confidence 99986544 77889999999999985 45999999999988776 46666 788554 7899999999999
Q ss_pred HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
+|++ .+|+||+|+|+||+++|++.+++.. ++|||||||++++.+
T Consensus 164 eq~~----~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~ 209 (403)
T PRK08526 164 DEIS----DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAM 209 (403)
T ss_pred HhcC----CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChH
Confidence 9995 6999999999999999999999864 999999999999864
No 19
>PLN03013 cysteine synthase
Probab=100.00 E-value=6.7e-37 Score=303.70 Aligned_cols=190 Identities=15% Similarity=0.131 Sum_probs=162.4
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---C-ceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLNLES 273 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~-~~v~~~ssGN~g~a~A~~a~~~G~~~ 273 (410)
.|||++++.+.+.. +++||+|+|.+||+||||||.+.+++..+++.|. + ..|+++|+||||+++|++|+.+|+++
T Consensus 123 ~TPLv~l~~l~~~~-g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~ 201 (429)
T PLN03013 123 KTPMVYLNSIAKGC-VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRL 201 (429)
T ss_pred CCCeEECccccccc-CCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCE
Confidence 79999999887665 6799999999999999999999999999988775 2 45678999999999999999999999
Q ss_pred EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCCh--hHHHhhhhhHH
Q psy11239 274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYP--TIVRDFQSIIG 350 (410)
Q Consensus 274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~t~g 350 (410)
+||||+..++ .++.+|+.+||+|+.++... ++++.+.+.++++++ ..+|++ +||+ .++..||+|+|
T Consensus 202 ~VvvP~~~s~---~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~--~g~~~~------~qy~Np~n~~ah~~ttg 270 (429)
T PLN03013 202 ILTMPASMSM---ERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNT--PDAYML------QQFDNPANPKIHYETTG 270 (429)
T ss_pred EEEECCCCcH---HHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhc--CCeEeC------CCCCCHHHHHHHHHHHH
Confidence 9999986554 88999999999999996443 677888888887764 234554 5552 23557999999
Q ss_pred HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
.||++|++ ..||+||+|+||||+++|+++++++. ++|||||||++++.+
T Consensus 271 ~EI~eq~~---~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l 321 (429)
T PLN03013 271 PEIWDDTK---GKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDIL 321 (429)
T ss_pred HHHHHhcC---CCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchh
Confidence 99999994 47999999999999999999999974 889999999999765
No 20
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.1e-37 Score=310.29 Aligned_cols=209 Identities=47% Similarity=0.775 Sum_probs=169.4
Q ss_pred hhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHH
Q psy11239 3 WFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATS 82 (410)
Q Consensus 3 ~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~ 82 (410)
++.+.+.++..++|||+++++|++.+|+.+||+|+|++|||||||||.++.++..+++++.+++|+++||||||+|+|++
T Consensus 38 ~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~alA~~ 117 (385)
T TIGR00263 38 ELNELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATA 117 (385)
T ss_pred HHHHHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHH
Confidence 35566777777899999999999988668999999999999999999988888888888877788888899999999999
Q ss_pred HHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCcccccccc
Q psy11239 83 CCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVR 160 (410)
Q Consensus 83 a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 160 (410)
|+++|++|+||||+.+.+..+.|+.+|+.|||+|+.++.+ .++++++++.+.+.+...+.+|+.++..+++||...+.
T Consensus 118 a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~ 197 (385)
T TIGR00263 118 AALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVR 197 (385)
T ss_pred HHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHH
Confidence 9999999999999863333336888999999999999743 47787766665544333355777777777789954456
Q ss_pred ccchhHHHHHHHhhhhc-CCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 161 DFQSIIGYEIHQQLNFN-FYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 161 ~g~~ti~~EI~~q~~~~-~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
+|++|++.||++|+... +..||+||+|+|+||+++|+..++.+. +.++|+.
T Consensus 198 ~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~~-------~~~~iig 249 (385)
T TIGR00263 198 DFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFIDD-------PSVQLIG 249 (385)
T ss_pred HHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhhC-------CCCeEEE
Confidence 99999999999997432 335899999999999999998877541 3567774
No 21
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=4.2e-37 Score=313.96 Aligned_cols=188 Identities=23% Similarity=0.303 Sum_probs=164.6
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..|||+++++|++.. +.+||+|+|++|||||||+|++.+++..+. +...+++| ++|+||||+++|++|+.+|++|+|
T Consensus 36 ~~TPL~~~~~Ls~~~-g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV-~aSaGNha~gvA~aA~~lGi~~~I 113 (521)
T PRK12483 36 RETPLQRAPNLSARL-GNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVI-TASAGNHAQGVALAAARLGVKAVI 113 (521)
T ss_pred CCCCeeEchhhhHhh-CCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEE-EECCCHHHHHHHHHHHHhCCCEEE
Confidence 489999999999887 689999999999999999999999887544 34445555 599999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH 354 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~ 354 (410)
|||+..+. .|+..++.+||+|+.+. ++++++.+.+.+..+++ +.+|+ |||++. +++|++|+|.||+
T Consensus 114 vmP~~tp~---~Kv~~~r~~GAeVil~g-~~~d~a~~~A~~la~e~--g~~~v-------~pfdd~~viaGqgTig~EI~ 180 (521)
T PRK12483 114 VMPRTTPQ---LKVDGVRAHGGEVVLHG-ESFPDALAHALKLAEEE--GLTFV-------PPFDDPDVIAGQGTVAMEIL 180 (521)
T ss_pred EECCCCCH---HHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCeee-------CCCCChHHHHHHHHHHHHHH
Confidence 99987654 78999999999999984 45999999999998876 56676 888655 7889999999999
Q ss_pred HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
+|++ ..||+||+|+|+||+++|++.+++.. ++|||||||++++..
T Consensus 181 eQ~~---~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~ 227 (521)
T PRK12483 181 RQHP---GPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCL 227 (521)
T ss_pred HHhC---CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchh
Confidence 9995 36999999999999999999999864 999999999998754
No 22
>KOG1250|consensus
Probab=100.00 E-value=1.9e-37 Score=294.06 Aligned_cols=188 Identities=26% Similarity=0.329 Sum_probs=167.9
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcC-CCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK-KKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g-~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..||+.++..|+... +.++|+|+|+++|+||||.|++.+++....+++ +.+++ ++|+||||.|+|++|+++|++++|
T Consensus 65 ~~TPl~~s~~lS~~~-g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gVi-asSaGNha~a~Ayaa~~LgipaTI 142 (457)
T KOG1250|consen 65 VETPLLKSVALSKKA-GMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVI-ASSAGNHAQAAAYAARKLGIPATI 142 (457)
T ss_pred ecccchhhhhhhhhc-CCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceE-EecCccHHHHHHHHHHhcCCceEE
Confidence 479999988899888 899999999999999999999999987555444 55655 499999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 353 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei 353 (410)
|||..++. .+++.++.+||+|+.. |. ++++...|.+.++++ +..|+ |||++. +++|++|++.||
T Consensus 143 VmP~~tp~---~kiq~~~nlGA~Vil~--G~~~deAk~~a~~lAke~--gl~yI-------~pfDhP~I~aGqgTig~EI 208 (457)
T KOG1250|consen 143 VMPVATPL---MKIQRCRNLGATVILS--GEDWDEAKAFAKRLAKEN--GLTYI-------PPFDHPDIWAGQGTIGLEI 208 (457)
T ss_pred EecCCChH---HHHHHHhccCCEEEEe--cccHHHHHHHHHHHHHhc--Cceec-------CCCCCchhhcCcchHHHHH
Confidence 99986655 7899999999999986 55 999999999999998 67888 899887 999999999999
Q ss_pred HHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCC
Q psy11239 354 HQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKR 403 (410)
Q Consensus 354 ~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~ 403 (410)
.+|++ .++++||||||+||+++||+.++++. +++|||||++++..|.
T Consensus 209 l~ql~---~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~ 257 (457)
T KOG1250|consen 209 LEQLK---EPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFN 257 (457)
T ss_pred HHhhc---CCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHH
Confidence 99996 45669999999999999999999975 9999999999998763
No 23
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=3.9e-37 Score=307.39 Aligned_cols=186 Identities=25% Similarity=0.367 Sum_probs=163.3
Q ss_pred ccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEc
Q psy11239 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIG 278 (410)
Q Consensus 199 tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p 278 (410)
|||+++++|++.. +.+||+|+|++|||||||+|++.+++..+.+.+....|+++|+||||+++|++|+++|++|+||||
T Consensus 1 TPl~~~~~ls~~~-g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p 79 (380)
T TIGR01127 1 TPLIYSTTLSDIT-GSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMP 79 (380)
T ss_pred CCceehHHHHHHh-CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 7999999998877 689999999999999999999999998888766644566799999999999999999999999999
Q ss_pred CCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHHhh
Q psy11239 279 ENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQL 357 (410)
Q Consensus 279 ~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~q~ 357 (410)
+..+. .|+++++.+||+|+.++ ++++++.+.+.++.++. +.+|+ |||++. +.+|++|+|.||++|+
T Consensus 80 ~~~~~---~k~~~~~~~GA~V~~~~-~~~~~a~~~a~~~~~~~--~~~~~-------~~~~~~~~~~g~~t~~~Ei~~q~ 146 (380)
T TIGR01127 80 ESAPP---SKVKATKSYGAEVILHG-DDYDEAYAFATSLAEEE--GRVFV-------HPFDDEFVMAGQGTIGLEIMEDI 146 (380)
T ss_pred CCCcH---HHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEec-------CCCCChhhhhhhHHHHHHHHHhC
Confidence 86554 78999999999999984 45999999998887765 45665 677443 6799999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
+ .||+||+|+||||+++|++.++++. ++|||||||++++.+
T Consensus 147 ~----~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~ 189 (380)
T TIGR01127 147 P----DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSM 189 (380)
T ss_pred C----CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 4 6999999999999999999999864 899999999998754
No 24
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.3e-36 Score=295.76 Aligned_cols=190 Identities=16% Similarity=0.131 Sum_probs=159.2
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---C-ceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLNLES 273 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~-~~v~~~ssGN~g~a~A~~a~~~G~~~ 273 (410)
.|||++++.+.... +.+||+|+|.+|||||||+|.+.+++..+.+.|. + ..|+++|+||||+|+|++|+.+|++|
T Consensus 15 ~TPLv~l~~l~~~~-~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~ 93 (322)
T PLN02565 15 KTPLVYLNNVVDGC-VARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKL 93 (322)
T ss_pred CCceEEccccCCCC-CceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeE
Confidence 79999987775443 4799999999999999999999999998887664 2 34667999999999999999999999
Q ss_pred EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHH
Q psy11239 274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIG 350 (410)
Q Consensus 274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g 350 (410)
+||||+..+. .|+++|+.+||+|+.++... ++++.+++.+++++. +..|++ |||++ +...||+|+|
T Consensus 94 ~ivvp~~~~~---~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~--~~~~~~------~q~~n~~n~~~~~~t~a 162 (322)
T PLN02565 94 IITMPASMSL---ERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKT--PNSYIL------QQFENPANPKIHYETTG 162 (322)
T ss_pred EEEeCCCCcH---HHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhC--CCcEee------cccCCHhHHHHHHHHHH
Confidence 9999986554 88999999999999986532 678888888877664 234554 55532 2456899999
Q ss_pred HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
+||++|+. ..||+||+|+||||+++|++.++++. ++|||+|||++|+.+
T Consensus 163 ~Ei~~q~~---~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~ 213 (322)
T PLN02565 163 PEIWKGTG---GKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVL 213 (322)
T ss_pred HHHHHhcC---CCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccc
Confidence 99999994 46999999999999999999999965 899999999999765
No 25
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=1e-36 Score=293.06 Aligned_cols=191 Identities=17% Similarity=0.189 Sum_probs=161.9
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|||++++++.... +.+||+|+|++||+||||+|++.+++..+.+.|. +..|+++|+||||+++|++|+.+|++|+
T Consensus 8 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~ 86 (290)
T TIGR01138 8 NTPLVRLQRMGPEN-GSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMK 86 (290)
T ss_pred CCceEEccccccCC-CCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEE
Confidence 79999999988776 6899999999999999999999999999988776 2446679999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIGY 351 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g~ 351 (410)
||||+..++ .|+++|+.+||+|+.++... ++++.+.+.++.++. +.+|+ +||.+ +...||+|+|.
T Consensus 87 i~~p~~~~~---~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~--~~~~~-------~~~~~~~~~~~~~~t~~~ 154 (290)
T TIGR01138 87 LLMPDNMSQ---ERKAAMRAYGAELILVTKEEGMEGARDLALELANRG--EGKLL-------DQFNNPDNPYAHYTSTGP 154 (290)
T ss_pred EEECCCCCH---HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC--CCCCC-------CccCCcccHHHHhHhHHH
Confidence 999986543 78899999999999997533 778888888877765 33454 44422 24567899999
Q ss_pred HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCc
Q psy11239 352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRT 404 (410)
Q Consensus 352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~ 404 (410)
||++|++ ..+|+||+|+|||||++|++.++++. ++|||+|||++++...|
T Consensus 155 Ei~~q~~---~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g 206 (290)
T TIGR01138 155 EIWQQTG---GRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG 206 (290)
T ss_pred HHHHHcC---CCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC
Confidence 9999995 46899999999999999999999864 89999999999876544
No 26
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=287.23 Aligned_cols=202 Identities=53% Similarity=0.881 Sum_probs=189.9
Q ss_pred hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT 81 (410)
Q Consensus 2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~ 81 (410)
++|+++++.|.+|||||+..++|++.+ +++||+|+|++|+||++|..+++-+++++++++++.+|.++++|-||.|.|.
T Consensus 43 ~el~~~l~~Y~GRptpLy~a~~Lt~~~-gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAt 121 (396)
T COG0133 43 AELDYLLKDYAGRPTPLYFAERLTEHL-GAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATAT 121 (396)
T ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhh-CceEEEehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHH
Confidence 567888999999999999999999998 5999999999999999999999999999999999999999888999999999
Q ss_pred HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239 82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV 159 (410)
Q Consensus 82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 159 (410)
+|++||++|+|+|-..+-+|+..|.-.|+.+||+|+.|..|+ +.+++.+|++.|..+..+++|++|+..++|||+..+
T Consensus 122 a~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iV 201 (396)
T COG0133 122 AAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIV 201 (396)
T ss_pred HHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHH
Confidence 999999999999998777777889999999999999999875 999999999999999999999999999999999888
Q ss_pred cccchhHHHHHHHh-hhhcCCCccEEEEecCCCCceeecccccccc
Q psy11239 160 RDFQSIIGYEIHQQ-LNFNFYNKKYILACVGGGSNALGRPTPIYYC 204 (410)
Q Consensus 160 ~~g~~ti~~EI~~q-~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~ 204 (410)
...|+.||.|.-+| ++..+..||.||.|||+|++..|+..||+.-
T Consensus 202 RdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~d 247 (396)
T COG0133 202 RDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDD 247 (396)
T ss_pred HHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccCC
Confidence 99999999998888 4556789999999999999999999999864
No 27
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=5.1e-37 Score=299.63 Aligned_cols=186 Identities=21% Similarity=0.253 Sum_probs=160.3
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.+.+..|+++|+||||+++|++|+++|++|+|||
T Consensus 19 ~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i~v 97 (322)
T PRK07476 19 RTPLVASASLSARA-GVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAARALGIRATICM 97 (322)
T ss_pred CCCceechhhHHhh-CCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEEEe
Confidence 79999999998877 68999999999999999999999999988877776535569999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|+..++ .|+.+|+.|||+|+.++ ++++++.+.+.++.++. +.+|+ .++. +|+ ...|++|++.||++|+
T Consensus 98 p~~~~~---~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g~~~~-~~~~--n~~---~~~g~~t~~~Ei~~Q~ 165 (322)
T PRK07476 98 SRLVPA---NKVDAIRALGAEVRIVG-RSQDDAQAEVERLVREE--GLTMV-PPFD--DPR---IIAGQGTIGLEILEAL 165 (322)
T ss_pred CCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEe-CCCC--Ccc---eeechhHHHHHHHHhC
Confidence 986554 78999999999999985 44888888888887765 45555 3332 222 4688999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCC
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGIS 400 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~ 400 (410)
+ .+|+||+|+|+||+++|++.+|+.. ++|||||||++++
T Consensus 166 ~----~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~ 206 (322)
T PRK07476 166 P----DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGA 206 (322)
T ss_pred c----CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCch
Confidence 5 5899999999999999999999865 8999999999876
No 28
>PLN02970 serine racemase
Probab=100.00 E-value=7.5e-37 Score=298.89 Aligned_cols=187 Identities=19% Similarity=0.258 Sum_probs=158.8
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||++++++++.. +.+||+|+|++||+||||||++.+++..+.+.+....|+++|+||||+++|++|+.+|++|+|||
T Consensus 27 ~TPL~~~~~l~~~~-g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivv 105 (328)
T PLN02970 27 RTPVLTSSSLDALA-GRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAYIVV 105 (328)
T ss_pred CCCeeechhhHHhh-CCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 89999999998877 57999999999999999999999998877643333335569999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHHh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQ 356 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~q 356 (410)
|+..++ .++..|+.+||+|+.++ ++++++.+.+.++.++. +.+|+ +||++. ...|++|+|+||++|
T Consensus 106 p~~~~~---~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~la~~~--g~~~~-------~~~~n~~~~~g~~t~g~Ei~~q 172 (328)
T PLN02970 106 PKNAPA---CKVDAVIRYGGIITWCE-PTVESREAVAARVQQET--GAVLI-------HPYNDGRVISGQGTIALEFLEQ 172 (328)
T ss_pred CCCCCH---HHHHHHHhcCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEEe-------CCCCCcchhhehHHHHHHHHHh
Confidence 986544 67889999999999996 45888888888877653 45554 555332 567999999999999
Q ss_pred hhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 357 LNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 357 ~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
++ .||+||+|+|+||+++|++++|++. ++|||+|||++++.+
T Consensus 173 l~----~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~ 216 (328)
T PLN02970 173 VP----ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDA 216 (328)
T ss_pred cc----CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHH
Confidence 95 5999999999999999999999874 899999999998743
No 29
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=8.9e-37 Score=307.03 Aligned_cols=188 Identities=23% Similarity=0.367 Sum_probs=162.4
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIY 276 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv 276 (410)
..|||+++++|++.. +.+||+|+|++|||||||+|++.+++..+.+.+....|+++|+||||+++|++|+++|++|+||
T Consensus 21 ~~TPl~~~~~ls~~~-g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv 99 (404)
T PRK08198 21 RRTPLEYSRTLSELT-GAEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQGVAYAASLLGIKATIV 99 (404)
T ss_pred CCCCceehhhHHHHh-CCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 489999999998877 6899999999999999999999999887764333334455999999999999999999999999
Q ss_pred EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239 277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ 355 (410)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~ 355 (410)
||+..+. .|+++++.|||+|+.++ +++++++..+.+.+++. +.+|+ +||++. ..+|++|+|.||++
T Consensus 100 ~p~~~~~---~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~~~~~~--g~~~~-------~~~~~~~~~~g~~t~a~EI~~ 166 (404)
T PRK08198 100 MPETAPL---SKVKATRSYGAEVVLHG-DVYDEALAKAQELAEET--GATFV-------HPFDDPDVIAGQGTIGLEILE 166 (404)
T ss_pred ECCCCCH---HHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEec-------CCCCCccHHHHHHHHHHHHHH
Confidence 9986544 78899999999999985 45999999999888775 45655 666443 67899999999999
Q ss_pred hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
|++ .+|+||+|+||||+++|++.+|++. ++|||||||++++.+
T Consensus 167 q~~----~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~ 211 (404)
T PRK08198 167 DLP----DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAM 211 (404)
T ss_pred hCC----CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHH
Confidence 995 6899999999999999999999864 899999999999764
No 30
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-36 Score=305.19 Aligned_cols=186 Identities=23% Similarity=0.278 Sum_probs=161.3
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC-CceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTATSCCLLNLESIIY 276 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~-~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv 276 (410)
.|||+++++|+... +.+||+|+|++||+||||+|++.+++..+.+.+. ++ |+++|+||||+++|++|+.+|++|+||
T Consensus 25 ~TPl~~~~~ls~~~-g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~~~g-vv~aSsGN~g~a~A~aa~~~G~~~~iv 102 (406)
T PRK06382 25 RTPLIHSTTFGDEY-GGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNG-VITASAGNHAQGVAYAASINGIDAKIV 102 (406)
T ss_pred CCCeeEhhhhHHHh-CCEEEEEecCCCCCCCCHHHHHHHHHHhcchhccCCe-EEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 89999999998877 6899999999999999999999999876655443 34 456999999999999999999999999
Q ss_pred EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239 277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ 355 (410)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~ 355 (410)
||+..+. .|+..++.+||+|+.++ ++++++...+.+.+++. +.+|+ +||++. +.+|++|+|.||++
T Consensus 103 mp~~~~~---~k~~~~~~~GA~Vv~~~-~~~~~a~~~a~~la~~~--~~~~v-------~~~~~~~~i~g~~t~~~Ei~e 169 (406)
T PRK06382 103 MPEYTIP---QKVNAVEAYGAHVILTG-RDYDEAHRYADKIAMDE--NRTFI-------EAFNDRWVISGQGTIGLEIME 169 (406)
T ss_pred EcCCCHH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEec-------CccCChHHHHHHHHHHHHHHH
Confidence 9986544 77889999999999885 44899998888887765 45666 777544 78899999999999
Q ss_pred hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
|++ .||+||+|+|+||+++|++.+++.. ++|||||||++++.+
T Consensus 170 q~~----~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~ 214 (406)
T PRK06382 170 DLP----DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSM 214 (406)
T ss_pred hcC----CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 994 6999999999999999999999864 999999999999753
No 31
>PLN02550 threonine dehydratase
Probab=100.00 E-value=2e-36 Score=310.63 Aligned_cols=188 Identities=26% Similarity=0.291 Sum_probs=164.8
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..|||+++++|++.. +.+||+|+|++||+||||+|++.+.+..+. +...+++| ++|+||||+++|++|+++|++|+|
T Consensus 108 ~~TPL~~s~~LS~~~-g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV-~aSaGNhAqgvA~aA~~lGika~I 185 (591)
T PLN02550 108 IESPLQLAKKLSERL-GVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVI-CSSAGNHAQGVALSAQRLGCDAVI 185 (591)
T ss_pred cCChhhhhHHhhHhh-CCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEE-EECCCHHHHHHHHHHHHcCCCEEE
Confidence 489999999999887 689999999999999999999999988664 44455655 599999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH 354 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~ 354 (410)
|||+..+. .|++.++.+||+|+.++ ++++++.+.+.++.++. +.+|+ |||++. +++|++|+|.||+
T Consensus 186 vmP~~tp~---~Kv~~~r~~GAeVvl~g-~~~dea~~~A~~la~e~--g~~fi-------~pfddp~viaGqgTig~EI~ 252 (591)
T PLN02550 186 AMPVTTPE---IKWQSVERLGATVVLVG-DSYDEAQAYAKQRALEE--GRTFI-------PPFDHPDVIAGQGTVGMEIV 252 (591)
T ss_pred EECCCCCH---HHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEEE-------CCCCChHHHHHHHHHHHHHH
Confidence 99986554 78899999999999984 44999999999888776 46777 888555 7889999999999
Q ss_pred HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
+|++ ..+|+||+|+|+||+++|++.++++. ++|||||||++++..
T Consensus 253 eQl~---~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~ 299 (591)
T PLN02550 253 RQHQ---GPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAM 299 (591)
T ss_pred HHcC---CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 9996 35999999999999999999999864 999999999988654
No 32
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=295.76 Aligned_cols=188 Identities=18% Similarity=0.185 Sum_probs=160.3
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC-CceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~-~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+.+.+. ...|+++|+||||+++|++|+++|++|+|
T Consensus 20 ~~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i 98 (322)
T PRK06110 20 PPTPQYRWPLLAERL-GCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQSVAFAARRHGLAATI 98 (322)
T ss_pred cCCCcccchhHHHHh-CCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCceEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 489999999998877 5799999999999999999999999988876543 22356699999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ 355 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~ 355 (410)
|||+..++ .+.++++.+||+|+.++ ++++++.+++.++.+++ +.+|+ ++|+.....||+|+|.||++
T Consensus 99 vvp~~~~~---~k~~~i~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~~~~~-------~~~~~~~~~G~~t~~~Ei~~ 165 (322)
T PRK06110 99 VVPHGNSV---EKNAAMRALGAELIEHG-EDFQAAREEAARLAAER--GLHMV-------PSFHPDLVRGVATYALELFR 165 (322)
T ss_pred EEcCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEc-------CCCCChHHhccchHHHHHHh
Confidence 99986544 67899999999999985 45899999888887775 44444 44532356799999999999
Q ss_pred hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
|++ .+|+||+|+|+||+++|++.++++. ++|||+|||++++.+
T Consensus 166 q~~----~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~ 210 (322)
T PRK06110 166 AVP----DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAY 210 (322)
T ss_pred hCC----CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHH
Confidence 994 6899999999999999999999754 899999999998754
No 33
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=2.1e-36 Score=295.60 Aligned_cols=185 Identities=23% Similarity=0.342 Sum_probs=158.7
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHH-cCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF-LKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~-~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..|||+++++|.+.. +.+||+|+|++||+||||||++.+++..+.+ .+.++ |+++|+||||+++|++|+.+|++|+|
T Consensus 26 ~~TPlv~~~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~-vv~~SsGN~g~alA~~aa~~G~~~~i 103 (333)
T PRK08638 26 RKTPLPRSNYLSERC-KGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKG-VVACSAGNHAQGVALSCALLGIDGKV 103 (333)
T ss_pred cCCCceechhhHHhh-CCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcCCe-EEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 389999999998776 6799999999999999999999999887654 44444 55699999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH 354 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~ 354 (410)
|||+..++ .|+++++.+||+|+.++ ++++++++.+.+.+++. +.+|+ +||++. ...|++|+|+||+
T Consensus 104 v~p~~~~~---~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~a~~~--g~~~~-------~~~~~~~~~~g~~t~a~Ei~ 170 (333)
T PRK08638 104 VMPKGAPK---SKVAATCGYGAEVVLHG-DNFNDTIAKVEEIVEEE--GRTFI-------PPYDDPKVIAGQGTIGLEIL 170 (333)
T ss_pred EeCCCCcH---HHHHHHHHcCCEEEEEC-cCHHHHHHHHHHHHHhc--CCEEc-------CcCCCcchhccccHHHHHHH
Confidence 99986544 78999999999999985 55899998888888775 45554 555222 5789999999999
Q ss_pred HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCC
Q psy11239 355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGIS 400 (410)
Q Consensus 355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~ 400 (410)
+|+. .+|+||+|+|+||+++|++.+|++. ++|||||||++++
T Consensus 171 ~q~~----~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~ 214 (333)
T PRK08638 171 EDLW----DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVH 214 (333)
T ss_pred hhcC----CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCc
Confidence 9994 5899999999999999999999874 8999999999984
No 34
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=2.8e-36 Score=290.71 Aligned_cols=181 Identities=15% Similarity=0.127 Sum_probs=148.1
Q ss_pred hhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHH
Q psy11239 5 DLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTAT 81 (410)
Q Consensus 5 ~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~ 81 (410)
+.|.. ...+|||+++++|.... +.+||+|+|++|||||||||.+...+..+.+.+. +..|+++||||||+|+|+
T Consensus 4 ~~i~~--~~g~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 80 (296)
T PRK11761 4 PTLED--TIGNTPLVKLQRLPPDR-GNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAM 80 (296)
T ss_pred ccHHH--hcCCCceEeccccccCC-CCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHH
Confidence 34444 46899999999998776 6899999999999999999988777777766654 245666799999999999
Q ss_pred HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc-
Q psy11239 82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV- 159 (410)
Q Consensus 82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 159 (410)
+|+.+|+||+||||+.++ +.|+++|+.|||+|+.++.. +++++.+.+.++.++. + + .+.+||+|+.
T Consensus 81 ~a~~~G~~~~i~~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~--~-~------~~~~~~~n~~~ 148 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMS---QERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG--E-G------KVLDQFANPDN 148 (296)
T ss_pred HHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc--C-C------EecCCCCChhh
Confidence 999999999999999887 58999999999999999842 5788877777776543 1 2 2356776652
Q ss_pred -cccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 160 -RDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 160 -~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
..||+|+++||++|++ + .+|+||+|+|+||+++|+.+.|.+
T Consensus 149 ~~~~~~t~~~Ei~eq~~--~-~~d~iv~~vG~Gg~~~Gi~~~lk~ 190 (296)
T PRK11761 149 PLAHYETTGPEIWRQTE--G-RITHFVSSMGTTGTIMGVSRYLKE 190 (296)
T ss_pred HHHHhhchHHHHHHhcC--C-CCCEEEecCCcHHHHHHHHHHHHH
Confidence 4578999999999964 2 479999999999999999777754
No 35
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=6.2e-37 Score=306.02 Aligned_cols=173 Identities=27% Similarity=0.332 Sum_probs=148.2
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHh-cCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFL-KKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~-~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+....+. +.+++| ++|+||||+++|++|+.+|++|
T Consensus 17 ~i~~TPl~~~~~Ls~~~-g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~~gVV-~aSaGNhg~avA~aa~~~Gi~~ 94 (403)
T PRK08526 17 FVNKTPFAYAPFLSKIS-GAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGVI-AASAGNHAQGVAISAKKFGIKA 94 (403)
T ss_pred cCCCCCccchHHHHHHh-CCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcCCEEE-EECccHHHHHHHHHHHHcCCCE
Confidence 56899999999999887 68999999999999999999887665444333 334454 4699999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E 169 (410)
+||||+.+| +.|++.++.|||+|+.++ ++++++++.+.+++++. +. .+.|||+++ .++||+|+|.|
T Consensus 95 ~IvmP~~~p---~~k~~~~r~~GA~Vv~~g-~~~~~a~~~a~~~a~~~--g~-------~~v~p~~~~~~i~G~gtia~E 161 (403)
T PRK08526 95 VIVMPEATP---LLKVSGTKALGAEVILKG-DNYDEAYAFALEYAKEN--NL-------TFIHPFEDEEVMAGQGTIALE 161 (403)
T ss_pred EEEEcCCCC---HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EeeCCCCCHHHHhhhHHHHHH
Confidence 999999988 489999999999999997 68999999999987764 22 347889877 58999999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
|++|++ .||+||+|+|+||+++|+...+..
T Consensus 162 I~eq~~----~~D~vvvpvGgGGl~aGia~~~k~ 191 (403)
T PRK08526 162 MLDEIS----DLDMVVVPVGGGGLISGIASAAKQ 191 (403)
T ss_pred HHHhcC----CCCEEEEecChHHHHHHHHHHHHH
Confidence 999964 489999999999999999877754
No 36
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=6.2e-36 Score=289.37 Aligned_cols=191 Identities=18% Similarity=0.174 Sum_probs=162.3
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|||++++.|+... +.+||+|+|++|||||||+|++.+++..+.+.|. +..|+++|+||||+++|++|+++|++|+
T Consensus 7 ~TPL~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~ 85 (299)
T TIGR01136 7 NTPLVRLNRLAPGC-DARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLI 85 (299)
T ss_pred CCceEEccccCCCC-CceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEE
Confidence 79999999998776 5799999999999999999999999998888775 2345679999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIGY 351 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g~ 351 (410)
||||+..++ .|+++|+.+||+|+.++... ++++.+.+.++.++. +.+|++ ++|++ +...||+|++.
T Consensus 86 i~vp~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~------~~~~~~~~~~~g~~t~~~ 154 (299)
T TIGR01136 86 LTMPETMSL---ERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAET--NKYVML------DQFENPANPEAHYKTTGP 154 (299)
T ss_pred EEECCCCCH---HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhC--CCeEec------CCCCCchhHHHHHHHHHH
Confidence 999986544 78999999999999996432 788888888877664 345554 45422 24679999999
Q ss_pred HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCC
Q psy11239 352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKR 403 (410)
Q Consensus 352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~ 403 (410)
||++|++ ..||+||+|+|+||+++|++.+|++. .+|||+|||++++.+.
T Consensus 155 Ei~~ql~---~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~ 205 (299)
T TIGR01136 155 EIWRDTD---GRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLS 205 (299)
T ss_pred HHHHhcC---CCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCcccc
Confidence 9999995 36999999999999999999999864 9999999999997654
No 37
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=5.4e-36 Score=295.65 Aligned_cols=190 Identities=16% Similarity=0.183 Sum_probs=159.4
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC----CceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNLES 273 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~----~~~v~~~ssGN~g~a~A~~a~~~G~~~ 273 (410)
.|||++++++.... +++||+|+|++||+||||+|.+.+++..+++.|. ...|+++|+||||+++|++|+.+|++|
T Consensus 59 ~TPl~~l~~l~~~~-g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~ 137 (368)
T PLN02556 59 KTPLVYLNKVTEGC-GAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKM 137 (368)
T ss_pred CCccEEcccccccc-CCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCE
Confidence 79999999887665 6899999999999999999999999999988764 234667999999999999999999999
Q ss_pred EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhhhhhHH
Q psy11239 274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDFQSIIG 350 (410)
Q Consensus 274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g 350 (410)
+||||+..+. .|+++|+.+||+|+.++... +...++++.++++++ ++. |++ +||.+ +...||.|+|
T Consensus 138 ~ivvp~~~~~---~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~-~~~-~~~------~q~~np~~~~~g~~ttg 206 (368)
T PLN02556 138 ILTMPSYTSL---ERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLEST-PDA-FML------QQFSNPANTQVHFETTG 206 (368)
T ss_pred EEEECCCCCH---HHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhc-CCC-Ccc------CCCCCHHHHHHHHHHHH
Confidence 9999986544 78999999999999986432 456777777777765 233 444 45522 2457999999
Q ss_pred HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
.||++|+. ..+|+||+|+|||||++|+++++++. ++|||||||++++.+
T Consensus 207 ~EI~eq~~---~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~ 257 (368)
T PLN02556 207 PEIWEDTL---GQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVL 257 (368)
T ss_pred HHHHHhcC---CCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccc
Confidence 99999984 47999999999999999999999874 899999999998654
No 38
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1e-36 Score=302.06 Aligned_cols=210 Identities=51% Similarity=0.830 Sum_probs=168.7
Q ss_pred hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT 81 (410)
Q Consensus 2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~ 81 (410)
+.+..+++.+...+|||+++++|++.+|+.+||+|+|++|||||||||.++..+..+.+.+...+|+++||||||+|+|+
T Consensus 21 ~~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~~~vv~~~ssGN~g~alA~ 100 (365)
T cd06446 21 EELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRVIAETGAGQHGVATAT 100 (365)
T ss_pred HHHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHH
Confidence 34566677777789999999999988877899999999999999999998888877888887788887789999999999
Q ss_pred HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeC--CCHHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239 82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY--GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV 159 (410)
Q Consensus 82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 159 (410)
+|+.+|++|+||||+..++..+.|+.+|+.|||+|+.++. +++++++..+.+.+.+...+.+|++++..+++||+...
T Consensus 101 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 180 (365)
T cd06446 101 ACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMV 180 (365)
T ss_pred HHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHH
Confidence 9999999999999987554445789999999999999984 24677776666654443224456566655567886556
Q ss_pred cccchhHHHHHHHhhhhcC-CCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 160 RDFQSIIGYEIHQQLNFNF-YNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 160 ~~g~~ti~~EI~~q~~~~~-~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
++|++|+++||++|+...+ ..||+||+|+|+||+++|+...+... +.++|+.
T Consensus 181 ~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~-------~~~~vig 233 (365)
T cd06446 181 RDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIND-------KDVKLIG 233 (365)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhC-------CCceEEE
Confidence 8999999999999975322 45999999999999999997776541 1466774
No 39
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=6.7e-37 Score=319.94 Aligned_cols=209 Identities=50% Similarity=0.808 Sum_probs=177.5
Q ss_pred hhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHH
Q psy11239 2 EWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTAT 81 (410)
Q Consensus 2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~ 81 (410)
++|.++++.+..+||||+++++|++.+ +.+||+|+|++|||||||+|+++.+++.+++++++++|+++|+||||+|+|+
T Consensus 258 ~~~~~~~~~~~grpTPL~~~~~Ls~~~-G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~ 336 (610)
T PRK13803 258 KTFKRLLQNYAGRPTPLTEAKRLSDIY-GARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATAT 336 (610)
T ss_pred HHHHHHHHHhCCCCCcceeHHHHHHhh-CCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHH
Confidence 567888999999999999999999887 6899999999999999999999988888999998888988889999999999
Q ss_pred HHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC--CHHHHHHHHHHHHhhcccCCcccccccccCccccccc
Q psy11239 82 SCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV 159 (410)
Q Consensus 82 ~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 159 (410)
+|+++|++|+||||+.+.++++.|+.+|+.|||+|+.++.+ ++.+++.++.+.+....++.+|++++..++|||...+
T Consensus 337 ~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v 416 (610)
T PRK13803 337 ACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMV 416 (610)
T ss_pred HHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHH
Confidence 99999999999999876555567999999999999999854 4778887777766333345678888777889996545
Q ss_pred cccchhHHHHHHHhhh-hcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 160 RDFQSIIGYEIHQQLN-FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 160 ~~g~~ti~~EI~~q~~-~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
..+|+|++.||.+|+. ..+..||+||+|+|+||+++|+..+|.+ .+.++|+.
T Consensus 417 ~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-------~~~v~iig 469 (610)
T PRK13803 417 AYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-------DPSVKLIG 469 (610)
T ss_pred HHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-------CCCceEEE
Confidence 6799999999999974 2245799999999999999999888843 13567774
No 40
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=2.6e-36 Score=302.86 Aligned_cols=189 Identities=21% Similarity=0.343 Sum_probs=159.7
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..|||+++++|++.. +.+||+|+|++|||||||+|++.+.+..+. ....++ |+++|+||||+++|++|+++|++|+|
T Consensus 15 ~~TPl~~~~~ls~~~-g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~g-vv~aSsGN~g~a~A~~a~~~G~~~~i 92 (409)
T TIGR02079 15 PHTPLQLNERLSEKY-GANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKG-VVCASAGNHAQGFAYACRHLGVHGTV 92 (409)
T ss_pred CCCCccccHHHHHHh-CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCE-EEEECccHHHHHHHHHHHHcCCCEEE
Confidence 389999999998877 689999999999999999999999887543 333444 55699999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEe-C-CCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQ-Y-GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 352 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~-~-g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~E 352 (410)
|||+..+. .|+.+++.+||+|+.+. . ++++++.+++.+.+++. +.+|+ +||++. +.+|++|+|.|
T Consensus 93 v~p~~~~~---~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~--g~~~~-------~~~~~~~~~~g~~ti~~E 160 (409)
T TIGR02079 93 FMPATTPK---QKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDH--GGTFI-------PPFDDPRIIEGQGTVAAE 160 (409)
T ss_pred EECCCCCH---HHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhc--CCEEe-------CCCCCHhHhhhhHHHHHH
Confidence 99986544 78899999999854221 2 34999999999988876 45666 777544 77899999999
Q ss_pred HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
|++|++ ..||+||+|+|+||+++|++.++++. ++|||||||++++..
T Consensus 161 i~~q~~---~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~ 209 (409)
T TIGR02079 161 ILDQLP---EKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSM 209 (409)
T ss_pred HHHhcC---CCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcH
Confidence 999996 36999999999999999999999864 899999999998754
No 41
>PLN02565 cysteine synthase
Probab=100.00 E-value=4.4e-36 Score=292.11 Aligned_cols=178 Identities=16% Similarity=0.087 Sum_probs=144.8
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---C-ceEEEeCccHHHHHHHHHHHHcC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLN 87 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~-~~v~~~ssGN~g~a~A~~a~~~G 87 (410)
...+|||++++.++... +.+||+|+|++|||||||||.+...+..+.+.+. + ..|+++||||||+|+|++|+.+|
T Consensus 12 ~ig~TPLv~l~~l~~~~-~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G 90 (322)
T PLN02565 12 LIGKTPLVYLNNVVDGC-VARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKG 90 (322)
T ss_pred HhCCCceEEccccCCCC-CceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcC
Confidence 46799999998876543 5799999999999999999988777666665543 3 34677799999999999999999
Q ss_pred CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239 88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS 164 (410)
Q Consensus 88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~ 164 (410)
+||+||||+.++ +.|+++|+.|||+|+.+++. +++++.+.+.+++++.+ + .| +.+||+|+. ..||+
T Consensus 91 ~~~~ivvp~~~~---~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~-~-~~------~~~q~~n~~n~~~~~~ 159 (322)
T PLN02565 91 YKLIITMPASMS---LERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTP-N-SY------ILQQFENPANPKIHYE 159 (322)
T ss_pred CeEEEEeCCCCc---HHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCC-C-cE------eecccCCHhHHHHHHH
Confidence 999999999988 58999999999999999743 46788888888776531 2 23 356676552 36899
Q ss_pred hHHHHHHHhhhhcCCCccEEEEecCCCCceeecccccccc
Q psy11239 165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYC 204 (410)
Q Consensus 165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~ 204 (410)
|+|+||++|+. + .||+||+|+|+||+++|+.+.|.+.
T Consensus 160 t~a~Ei~~q~~--~-~~d~vv~~vG~GG~l~Gi~~~lk~~ 196 (322)
T PLN02565 160 TTGPEIWKGTG--G-KVDAFVSGIGTGGTITGAGKYLKEQ 196 (322)
T ss_pred HHHHHHHHhcC--C-CCCEEEEcCCchHHHHHHHHHHHHh
Confidence 99999999953 2 4899999999999999998777543
No 42
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=2.3e-36 Score=304.55 Aligned_cols=191 Identities=20% Similarity=0.326 Sum_probs=160.5
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..|||+++++|++.. +.+||+|+|++|||||||+|++.+++.... +...++ |+++|+||||+++|++|+++|++|+|
T Consensus 24 ~~TPl~~~~~ls~~~-g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~~-Vv~aSsGN~g~alA~~a~~~G~~~~I 101 (420)
T PRK08639 24 PETPLQRNDYLSEKY-GANVYLKREDLQPVRSYKLRGAYNAISQLSDEELAAG-VVCASAGNHAQGVAYACRHLGIPGVI 101 (420)
T ss_pred cCCCccchHHHHHHh-CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCE-EEEECccHHHHHHHHHHHHcCCCEEE
Confidence 489999999998776 689999999999999999999999987643 233344 56699999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEe-CC-CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQ-YG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 352 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~-~g-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~E 352 (410)
|||+..+. .|+..++.+||+|+.+. .+ +++++.+.+.+++++. +.+|+ |||++. +.+|++|+|.|
T Consensus 102 vmP~~~~~---~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~--g~~~~-------~~~~~~~~~~G~~tig~E 169 (420)
T PRK08639 102 FMPVTTPQ---QKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET--GATFI-------PPFDDPDVIAGQGTVAVE 169 (420)
T ss_pred EECCCChH---HHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc--CCccc-------CCCCChhHhcchhHHHHH
Confidence 99986544 78899999999854332 24 4999999999988876 45666 788554 78999999999
Q ss_pred HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
|++|++..+ .||+||+|+|+||+++|++.++++. ++|||||||++++.+
T Consensus 170 I~eq~~~~~-~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~ 220 (420)
T PRK08639 170 ILEQLEKEG-SPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASM 220 (420)
T ss_pred HHHhccccC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcH
Confidence 999996211 3999999999999999999999864 899999999998764
No 43
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=6.3e-36 Score=291.84 Aligned_cols=179 Identities=22% Similarity=0.307 Sum_probs=155.8
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIY 276 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv 276 (410)
..|||++++.+ .||+|+|++|||||||+|++.+++..+.+.+....|+++|+||||+|+|++|+.+|++|+||
T Consensus 38 ~~TPL~~~~~l-------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~Iv 110 (349)
T PRK08813 38 SPTPLHYAERF-------GVWLKLENLQRTGSYKVRGALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAITV 110 (349)
T ss_pred CCCCeEECCCC-------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 48999876543 49999999999999999999999998888777544667999999999999999999999999
Q ss_pred EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239 277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ 355 (410)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~ 355 (410)
||+..+. .|+..++.+||+|+.++ ++++++...+.+++++. +.+|+ +||++. +.+||+|+|.||++
T Consensus 111 vP~~~~~---~K~~~i~~~GAeVv~~g-~~~~~a~~~a~~la~~~--g~~~v-------~~~~np~~i~G~~Tig~EI~e 177 (349)
T PRK08813 111 MPHGAPQ---TKIAGVAHWGATVRQHG-NSYDEAYAFARELADQN--GYRFL-------SAFDDPDVIAGQGTVGIELAA 177 (349)
T ss_pred EcCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEc-------CccCChHHHHHHHHHHHHHHc
Confidence 9986544 88999999999999984 55999999998888775 45555 666443 77899999999998
Q ss_pred hhhhcCCCCCEEEEccCchhHHHHHHHHHhcCCCeEEEEccCCCCc
Q psy11239 356 QLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGISK 401 (410)
Q Consensus 356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~~~~vigVe~~g~~~ 401 (410)
|. ||+||+|+|+||+++|++.+++++++|||||||++++.
T Consensus 178 ~~------pD~VvvpvGgGGliaGia~~lk~~~~rVigVqpega~~ 217 (349)
T PRK08813 178 HA------PDVVIVPIGGGGLASGVALALKSQGVRVVGAQVEGVDS 217 (349)
T ss_pred CC------CCEEEEEeCccHHHHHHHHHHhcCCCEEEEEEECCCch
Confidence 63 79999999999999999999998899999999999864
No 44
>PLN02550 threonine dehydratase
Probab=100.00 E-value=5.5e-36 Score=307.35 Aligned_cols=191 Identities=26% Similarity=0.262 Sum_probs=158.7
Q ss_pred hhhhhcC---CCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHH-HHhcCCceEEEeCccHHHHHH
Q psy11239 4 FDLFYNP---KKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLA-KFLKKKRIICETGAGMHGVST 79 (410)
Q Consensus 4 ~~~~~~~---~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~-~~~~~~~~v~~~ssGN~g~a~ 79 (410)
+..|+++ -...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+... ++....++|+ +|+||||+++
T Consensus 95 ~~~il~~~v~~~i~~TPL~~s~~LS~~~-g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~-aSaGNhAqgv 172 (591)
T PLN02550 95 LTNILSAKVYDVAIESPLQLAKKLSERL-GVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVIC-SSAGNHAQGV 172 (591)
T ss_pred HHHHHhhhhhccccCChhhhhHHhhHhh-CCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEE-ECCCHHHHHH
Confidence 4455544 256899999999999988 68999999999999999999887665543 4444556666 6999999999
Q ss_pred HHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-
Q psy11239 80 ATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI- 158 (410)
Q Consensus 80 A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~- 158 (410)
|++|+++|++|+||||+.+| ..|++.++.|||+|+.++ ++++++.+.+.+++++. +. .+.+||+++
T Consensus 173 A~aA~~lGika~IvmP~~tp---~~Kv~~~r~~GAeVvl~g-~~~dea~~~A~~la~e~--g~-------~fi~pfddp~ 239 (591)
T PLN02550 173 ALSAQRLGCDAVIAMPVTTP---EIKWQSVERLGATVVLVG-DSYDEAQAYAKQRALEE--GR-------TFIPPFDHPD 239 (591)
T ss_pred HHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CC-------EEECCCCChH
Confidence 99999999999999999998 489999999999999997 67999999999888764 22 346899887
Q ss_pred ccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 159 VRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 159 ~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
.++||+|+|.||++|++ + .+|+||+|+|+||+++|+.+.+..+ .+.++|+.
T Consensus 240 viaGqgTig~EI~eQl~--~-~~D~VvvpVGgGGLiaGia~~lK~l------~p~vkVIG 290 (591)
T PLN02550 240 VIAGQGTVGMEIVRQHQ--G-PLHAIFVPVGGGGLIAGIAAYVKRV------RPEVKIIG 290 (591)
T ss_pred HHHHHHHHHHHHHHHcC--C-CCCEEEEEeChhHHHHHHHHHHHHh------CCCCEEEE
Confidence 58999999999999964 2 4899999999999999997776542 24678884
No 45
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=4.1e-36 Score=292.11 Aligned_cols=194 Identities=22% Similarity=0.209 Sum_probs=157.4
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC--CceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK--KRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~--~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
.|||++++++.+.. +.+||+|+|++||+||||+|++.+++..+.+.+. ...|+++|+||||+++|++|+.+|++|+|
T Consensus 1 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i 79 (316)
T cd06448 1 KTPLIESTALSKTA-GCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTI 79 (316)
T ss_pred CCCccccchhhHhh-CCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 48999999998776 6899999999999999999999999999988873 33455699999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ 355 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~ 355 (410)
|||+..++ .++++|+.+||+|+.++...++++.+.+.+..++. ++.+|+ .++. ||+ ...|++|+|+||++
T Consensus 80 v~p~~~~~---~k~~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~~--n~~---~~~g~~t~~~Ei~~ 149 (316)
T cd06448 80 VVPESTKP---RVVEKLRDEGATVVVHGKVWWEADNYLREELAEND-PGPVYV-HPFD--DPL---IWEGHSSMVDEIAQ 149 (316)
T ss_pred EECCCCCH---HHHHHHHHcCCEEEEECCchHHHHHHHHHHHHhcc-CCcEEe-CCCC--Cch---hhccccHHHHHHHH
Confidence 99986543 78999999999999986322666665565555442 234555 3322 222 56788999999999
Q ss_pred hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC---CCeEEEEccCCCCcCC
Q psy11239 356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS---NFKLVAIESGGISKKR 403 (410)
Q Consensus 356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~---~~~vigVe~~g~~~~~ 403 (410)
|++.. ..||+||+|+|+||+++|++++|++. +++||+|||++++.+.
T Consensus 150 q~~~~-~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~ 199 (316)
T cd06448 150 QLQSQ-EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLN 199 (316)
T ss_pred Hcccc-CCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHH
Confidence 99621 26999999999999999999999863 7999999999997653
No 46
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.3e-36 Score=296.71 Aligned_cols=189 Identities=21% Similarity=0.236 Sum_probs=156.1
Q ss_pred hhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHH
Q psy11239 5 DLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCC 84 (410)
Q Consensus 5 ~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~ 84 (410)
+.|.+ .+.+|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+....|+++|+||||+|+|++|+
T Consensus 11 ~~i~~--~i~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~alA~~a~ 87 (322)
T PRK07476 11 RRIAG--RVRRTPLVASASLSARA-GVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAAR 87 (322)
T ss_pred HHHhC--CCCCCCceechhhHHhh-CCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHHHHHHHHH
Confidence 45544 56899999999999887 6899999999999999999988777666666665553555699999999999999
Q ss_pred HcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccc
Q psy11239 85 LLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQ 163 (410)
Q Consensus 85 ~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~ 163 (410)
.+|+||+||||+.++ +.|+.+|+.|||+|+.++ ++++++++.+.+++++. +.+ +.+||+|+ .+.|+
T Consensus 88 ~~G~~~~i~vp~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g~~-------~~~~~~n~~~~~g~ 154 (322)
T PRK07476 88 ALGIRATICMSRLVP---ANKVDAIRALGAEVRIVG-RSQDDAQAEVERLVREE--GLT-------MVPPFDDPRIIAGQ 154 (322)
T ss_pred HhCCCEEEEeCCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCE-------EeCCCCCcceeech
Confidence 999999999999988 589999999999999998 67888988888887654 222 35677666 47899
Q ss_pred hhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239 164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK 219 (410)
Q Consensus 164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K 219 (410)
+|+++||++|++ .+|+||+|+|+||+++|+...|... .+.++|+.-
T Consensus 155 ~t~~~Ei~~Q~~----~~d~iv~~vG~GG~~~Gv~~~~k~~------~~~~~vigV 200 (322)
T PRK07476 155 GTIGLEILEALP----DVATVLVPLSGGGLASGVAAAVKAI------RPAIRVIGV 200 (322)
T ss_pred hHHHHHHHHhCc----CCCEEEEEcChHHHHHHHHHHHHHh------CCCCEEEEE
Confidence 999999999964 3799999999999999998777542 246777753
No 47
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=8.3e-36 Score=288.42 Aligned_cols=193 Identities=20% Similarity=0.187 Sum_probs=160.0
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|||+++++ .... +.+||+|+|++|||||||+|++.+++..+.+.|. +..|+++|+||||+++|++|+++|++|+
T Consensus 7 ~TPl~~~~~-~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~ 84 (298)
T TIGR01139 7 NTPLVRLNR-IEGC-NANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLI 84 (298)
T ss_pred CCceEEccc-cCCC-CceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEE
Confidence 699999888 3444 6899999999999999999999999998888775 2345679999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei 353 (410)
||||+..++ .++++|+.+||+|+.++... ++++++++.++.++. ++.+|+++++.| |. +...||+|++.||
T Consensus 85 i~vp~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~n--~~--~~~~g~~t~~~Ei 156 (298)
T TIGR01139 85 LTMPETMSI---ERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAAST-PNSYFMLQQFEN--PA--NPEIHRKTTGPEI 156 (298)
T ss_pred EEeCCccCH---HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhC-CCcEEcccccCC--cc--cHHHHHHHHHHHH
Confidence 999986544 78999999999999996432 567888888877665 223545544442 21 2467999999999
Q ss_pred HHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCC
Q psy11239 354 HQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKR 403 (410)
Q Consensus 354 ~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~ 403 (410)
++|++ ..||+||+|+|+||+++|++.+|++. ++|||+|||.+++.+.
T Consensus 157 ~~q~~---~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~ 205 (298)
T TIGR01139 157 WRDTD---GKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLS 205 (298)
T ss_pred HHHhC---CCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccC
Confidence 99995 36999999999999999999999874 9999999999987654
No 48
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=1.4e-36 Score=296.84 Aligned_cols=189 Identities=21% Similarity=0.250 Sum_probs=155.0
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
.+++|||+++++|++.+ +.+||+|+|++|||||||||.+...+....+......|+++||||||+|+|++|+.+|++|+
T Consensus 24 ~i~~TPlv~~~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~vv~~SsGN~g~alA~~aa~~G~~~~ 102 (333)
T PRK08638 24 RIRKTPLPRSNYLSERC-KGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVALSCALLGIDGK 102 (333)
T ss_pred cCcCCCceechhhHHhh-CCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcCCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 56899999999999887 57999999999999999999887766544432223456667999999999999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239 92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI 170 (410)
||||+.++ +.|+.+|+.|||+|+.++ ++++++++.+.+.+++. +.+ +.+||++| .+.||+|+++||
T Consensus 103 iv~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~a~~~--g~~-------~~~~~~~~~~~~g~~t~a~Ei 169 (333)
T PRK08638 103 VVMPKGAP---KSKVAATCGYGAEVVLHG-DNFNDTIAKVEEIVEEE--GRT-------FIPPYDDPKVIAGQGTIGLEI 169 (333)
T ss_pred EEeCCCCc---HHHHHHHHHcCCEEEEEC-cCHHHHHHHHHHHHHhc--CCE-------EcCcCCCcchhccccHHHHHH
Confidence 99999887 589999999999999997 78899999888887764 222 35777666 479999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCCch
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGA 228 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS 228 (410)
++|+. .+|+||+|+|+||+++|+...|.+. .+.++|+. .+|.++
T Consensus 170 ~~q~~----~~d~vv~~vG~Gg~~~Gv~~~lk~~------~~~~~vig----Vep~g~ 213 (333)
T PRK08638 170 LEDLW----DVDTVIVPIGGGGLIAGIAVALKSI------NPTIHIIG----VQSENV 213 (333)
T ss_pred HhhcC----CCCEEEEEeChhHHHHHHHHHHHHh------CCCCEEEE----EEECCC
Confidence 99963 3799999999999999997777542 24678884 445554
No 49
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=2.9e-35 Score=294.58 Aligned_cols=190 Identities=20% Similarity=0.231 Sum_probs=154.5
Q ss_pred CCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEE
Q psy11239 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII 92 (410)
Q Consensus 13 ~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~i 92 (410)
.++|||+++++|++.+|..+||+|+|++|||||||||.+...+..+.+.+...+++ +|+||||+|+|++|+.+|++|+|
T Consensus 77 eG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~v 155 (394)
T PRK08197 77 EGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVKHLAM-PTNGNAGAAWAAYAARAGIRATI 155 (394)
T ss_pred cCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEE
Confidence 35799999999998885569999999999999999999887777777777665555 59999999999999999999999
Q ss_pred EeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHHH
Q psy11239 93 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH 171 (410)
Q Consensus 93 v~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~ 171 (410)
|||++++ +.|+.+|+.|||+|+.++ ++++++.+.+.+.+++. .+|+. ++|+|| .++|++|+++||+
T Consensus 156 ~vp~~~~---~~k~~~~~~~GA~Vi~v~-~~~~~~~~~a~~~~~~~---g~~~~------~~~~np~~ieG~~t~a~Ei~ 222 (394)
T PRK08197 156 FMPADAP---EITRLECALAGAELYLVD-GLISDAGKIVAEAVAEY---GWFDV------STLKEPYRIEGKKTMGLELA 222 (394)
T ss_pred EEcCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc---Ccccc------cCCCCccchhcHHHHHHHHH
Confidence 9999887 589999999999999998 78888888888877653 23433 333333 4689999999999
Q ss_pred HhhhhcCCCccEEEEecCCCCceeeccccccccccccccc-cCceeEE
Q psy11239 172 QQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNIL-KGSKIFL 218 (410)
Q Consensus 172 ~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~-~~~~v~~ 218 (410)
+|+. +..||+||+|+|+||+++|+..+|.++..+.-.. +..+|+.
T Consensus 223 eQl~--~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~ 268 (394)
T PRK08197 223 EQLG--WRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVA 268 (394)
T ss_pred HHcC--CCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEE
Confidence 9964 3359999999999999999999987654322110 2456664
No 50
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=8.5e-36 Score=286.64 Aligned_cols=176 Identities=16% Similarity=0.146 Sum_probs=146.5
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL 88 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~ 88 (410)
..++|||+++++|+... +.+||+|+|++|||||||||.+...+..+.+.+. +..|+++|+||||+|+|++|+.+|+
T Consensus 5 ~ig~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~ 83 (290)
T TIGR01138 5 TVGNTPLVRLQRMGPEN-GSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGY 83 (290)
T ss_pred hCCCCceEEccccccCC-CCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcCC
Confidence 35799999999998876 6899999999999999999998877777777665 3567778999999999999999999
Q ss_pred cEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccchh
Q psy11239 89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQSI 165 (410)
Q Consensus 89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~t 165 (410)
+|+||||+.++ +.|+++|+.|||+|+.++.. +++++.+.+.+++++.+ .+ +.+||+++. ..||+|
T Consensus 84 ~~~i~~p~~~~---~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~--~~-------~~~~~~~~~~~~~~~~t 151 (290)
T TIGR01138 84 RMKLLMPDNMS---QERKAAMRAYGAELILVTKEEGMEGARDLALELANRGE--GK-------LLDQFNNPDNPYAHYTS 151 (290)
T ss_pred eEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC--CC-------CCCccCCcccHHHHhHh
Confidence 99999999887 58999999999999999843 47788778777776541 12 356776653 246899
Q ss_pred HHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 166 IGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 166 i~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
+++||++|+. + .+|+||+|+||||+++|+.+.|.+
T Consensus 152 ~~~Ei~~q~~--~-~~d~iv~~vG~Gg~~~Gv~~~lk~ 186 (290)
T TIGR01138 152 TGPEIWQQTG--G-RITHFVSSMGTTGTIMGVSRFLKE 186 (290)
T ss_pred HHHHHHHHcC--C-CCCEEEECCCchHHHHHHHHHHHH
Confidence 9999999963 2 489999999999999999777654
No 51
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=5.2e-36 Score=306.18 Aligned_cols=188 Identities=26% Similarity=0.352 Sum_probs=164.0
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHH-HHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLA-KFLKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a-~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..|||+++++|++.. +.+||+|+|++||+||||+|++.+++..+ .+.+.+++| ++|+||||+++|++|+++|++|+|
T Consensus 16 ~~TPL~~~~~Ls~~~-g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV-~aSaGNha~~vA~aa~~~Gi~~~I 93 (499)
T TIGR01124 16 QETPLQKAAKLSERL-GNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVI-AASAGNHAQGVAFSAARLGLKALI 93 (499)
T ss_pred CCCCeeehHHHHHHh-CCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEE-EECCCHHHHHHHHHHHHcCCCEEE
Confidence 489999999999887 68999999999999999999999998765 455555655 499999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH 354 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~ 354 (410)
|||+.++. .|++.++.+||+|+.++ ++++++...+.++.++. +.+|+ +||++. +++|++|+|.||+
T Consensus 94 vmP~~tp~---~Kv~~~r~~GA~Vvl~g-~~~d~a~~~a~~la~~~--g~~~i-------~p~~~~~~i~G~gtig~EI~ 160 (499)
T TIGR01124 94 VMPETTPD---IKVDAVRGFGGEVVLHG-ANFDDAKAKAIELSQEK--GLTFI-------HPFDDPLVIAGQGTLALEIL 160 (499)
T ss_pred EECCCCCH---HHHHHHHhCCCEEEEeC-cCHHHHHHHHHHHHHhc--CCEee-------CCCCChHHHHhhHHHHHHHH
Confidence 99986554 78999999999999984 44999999999988775 56676 778554 7899999999999
Q ss_pred HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
+|++ ..+|+||+|+|||||++|++.++++. ++|||||||++++..
T Consensus 161 ~q~~---~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~ 207 (499)
T TIGR01124 161 RQVA---NPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCM 207 (499)
T ss_pred HhCC---CCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 9995 36999999999999999999999864 899999999998744
No 52
>PLN02970 serine racemase
Probab=100.00 E-value=2.2e-36 Score=295.68 Aligned_cols=183 Identities=18% Similarity=0.191 Sum_probs=150.9
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
...+|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+....|+++|+||||+|+|++|+.+|+||+
T Consensus 24 ~i~~TPL~~~~~l~~~~-g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ 102 (328)
T PLN02970 24 FIHRTPVLTSSSLDALA-GRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAY 102 (328)
T ss_pred cCCCCCeeechhhHHhh-CCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEEECCcHHHHHHHHHHHHcCCCEE
Confidence 55799999999999887 57999999999999999999887666555433333345557999999999999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239 92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI 170 (410)
||||+.++ +.|+.+|+.|||+|+.++ ++++++.+.+.+++++. +. .+.+||+++ .+.|++|+++||
T Consensus 103 ivvp~~~~---~~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~la~~~--g~-------~~~~~~~n~~~~~g~~t~g~Ei 169 (328)
T PLN02970 103 IVVPKNAP---ACKVDAVIRYGGIITWCE-PTVESREAVAARVQQET--GA-------VLIHPYNDGRVISGQGTIALEF 169 (328)
T ss_pred EEECCCCC---HHHHHHHHhcCCEEEEeC-CCHHHHHHHHHHHHHhc--CC-------EEeCCCCCcchhhehHHHHHHH
Confidence 99999988 589999999999999998 67888888888877642 22 235777766 478999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
++|++ .||+||+|+|+||++.|+...|.+. .+.++|+.
T Consensus 170 ~~ql~----~~D~vv~~vG~GG~~~Gi~~~lk~~------~~~~kvi~ 207 (328)
T PLN02970 170 LEQVP----ELDVIIVPISGGGLISGIALAAKAI------KPSIKIIA 207 (328)
T ss_pred HHhcc----CCCEEEEeeCchHHHHHHHHHHHhc------CCCCEEEE
Confidence 99974 4899999999999999997777542 24677774
No 53
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=6.7e-36 Score=291.86 Aligned_cols=184 Identities=17% Similarity=0.229 Sum_probs=156.6
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHH-cCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF-LKKKRIICETGAGMHGVSTATSCCLLNLESIIY 276 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~-~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv 276 (410)
.|||++++++.+.. +.+||+|+|++||+||||+|.+.+++..+.+ .+.+++ +++|+||||+|+|++|+.+|++|++|
T Consensus 24 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~v-v~aSsGN~g~alA~~a~~~G~~~~vv 101 (321)
T PRK07048 24 RTPVLTSRTADART-GAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRAGV-VTFSSGNHAQAIALSARLLGIPATIV 101 (321)
T ss_pred CCCCccchhhHHhc-CCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhcCCcE-EEeCCCHHHHHHHHHHHHcCCCEEEE
Confidence 79999999988766 6899999999999999999999999887663 344554 56999999999999999999999999
Q ss_pred EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239 277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ 355 (410)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~ 355 (410)
||+..+ +.|+.+|+.+||+|+.++ ++++++...+.++.++. +.+|+ +||++. ...|++|++.||++
T Consensus 102 vp~~~~---~~k~~~~~~~GAeV~~~~-~~~~~~~~~a~~l~~~~--g~~~~-------~~~~~~~~~~g~~t~~~EI~~ 168 (321)
T PRK07048 102 MPQDAP---AAKVAATRGYGGEVVTYD-RYTEDREEIGRRLAEER--GLTLI-------PPYDHPHVIAGQGTAAKELFE 168 (321)
T ss_pred ECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEE-------CCCCCcchhhccchHHHHHHh
Confidence 998654 378999999999999996 45777777777776664 45555 555322 57899999999999
Q ss_pred hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCC
Q psy11239 356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGIS 400 (410)
Q Consensus 356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~ 400 (410)
|++ .||+||+|+|||||++|++.++++. ++|||||||++++
T Consensus 169 q~~----~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~ 211 (321)
T PRK07048 169 EVG----PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGN 211 (321)
T ss_pred hcC----CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCCh
Confidence 994 6999999999999999999999864 8999999999986
No 54
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=9.7e-36 Score=289.62 Aligned_cols=187 Identities=19% Similarity=0.266 Sum_probs=158.3
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..|||+++++|.... +.+||+|+|++|||||||+|++.+++..+. +.+.+++ +++|+||||+++|++|+++|++|+|
T Consensus 18 ~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~v-v~aSsGN~g~alA~~a~~~G~~~~v 95 (317)
T TIGR02991 18 EETPLVESPSLSELC-GVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAGV-VAASTGNHGRALAYAAAEEGVRATI 95 (317)
T ss_pred CCCCceechhhHHhh-CCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhccCCeE-EEECCCHHHHHHHHHHHHhCCCEEE
Confidence 389999999988776 679999999999999999999999987654 3444554 5699999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH 354 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~ 354 (410)
|||+..++ .|++.++.+||+|+.++ ++++++.+.+.+..++. +.+|+ +||++. ..+|++|++.||+
T Consensus 96 ~~p~~~~~---~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g~~~~-------~~~~n~~~~~g~~t~a~Ei~ 162 (317)
T TIGR02991 96 CMSELVPQ---NKVDEIRRLGAEVRIVG-RSQDDAQEEVERLVADR--GLTML-------PPFDHPDIVAGQGTLGLEVV 162 (317)
T ss_pred EcCCCCCH---HHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEee-------CCCCChHHHhhHHHHHHHHH
Confidence 99986543 78999999999999996 45888888888887765 45555 555322 5789999999999
Q ss_pred HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
+|++ .+|+||+|+|+||+++|++.+|++. ++|||||||++++..
T Consensus 163 ~q~~----~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~ 208 (317)
T TIGR02991 163 EQMP----DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAM 208 (317)
T ss_pred HhCC----CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHH
Confidence 9995 5899999999999999999999874 899999999876543
No 55
>PLN00011 cysteine synthase
Probab=100.00 E-value=2e-35 Score=288.33 Aligned_cols=191 Identities=19% Similarity=0.131 Sum_probs=158.4
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC-----CceEEecCchHHHHHHHHHHHHcCCc
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-----KRIICETGAGMHGVSTATSCCLLNLE 272 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~-----~~~v~~~ssGN~g~a~A~~a~~~G~~ 272 (410)
.|||++++++.... +.+||+|+|++|||||||+|++.+++..+.+.|. +++ +++|+||||+++|++|+.+|++
T Consensus 17 ~TPl~~l~~l~~~~-g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~v-v~aSsGN~g~alA~~a~~~G~~ 94 (323)
T PLN00011 17 NTPMVYLNNIVDGC-VARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTL-IEATAGNTGIGLACIGAARGYK 94 (323)
T ss_pred CCceEEccccCCCC-CceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEE-EEeCCChHHHHHHHHHHHcCCe
Confidence 89999988887554 4799999999999999999999999999988873 444 5699999999999999999999
Q ss_pred EEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHH
Q psy11239 273 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGY 351 (410)
Q Consensus 273 ~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~ 351 (410)
|+||||+..+ +.|+++++.+||+|+.++... .++.++++.++.++. ..+|+++++.| +. +...||.|+|.
T Consensus 95 ~~ivvp~~~~---~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~--~~~~~~~~~~n--~~--n~~~~~~t~~~ 165 (323)
T PLN00011 95 VILVMPSTMS---LERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKT--PGGYIPQQFEN--PA--NPEIHYRTTGP 165 (323)
T ss_pred EEEEeCCCCC---HHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhC--CCeEEeccccC--Cc--cHHHHHHHHHH
Confidence 9999998654 388999999999999987432 456677777776654 23555544442 21 23458999999
Q ss_pred HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
||++|+. ..||+||+|+|||||++|++.++++. ++|||||||++++.+
T Consensus 166 EI~~q~~---~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~ 215 (323)
T PLN00011 166 EIWRDSA---GKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVL 215 (323)
T ss_pred HHHHhcC---CCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCccc
Confidence 9999984 37999999999999999999999864 899999999999765
No 56
>PLN03013 cysteine synthase
Probab=100.00 E-value=2.6e-36 Score=299.46 Aligned_cols=186 Identities=16% Similarity=0.078 Sum_probs=152.7
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---C-ceEEEeCccHHHHHHHHHHHHcC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLN 87 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~-~~v~~~ssGN~g~a~A~~a~~~G 87 (410)
..++|||++++.+.+.. +.+||+|+|++|||||||||.+...+..+++.+. + .+|+++||||||+|+|++|+.+|
T Consensus 120 ~iG~TPLv~l~~l~~~~-g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G 198 (429)
T PLN03013 120 LIGKTPMVYLNSIAKGC-VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRG 198 (429)
T ss_pred cCCCCCeEECccccccc-CCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcC
Confidence 45799999999988765 6799999999999999999988777777766653 3 45777899999999999999999
Q ss_pred CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc-c-ccch
Q psy11239 88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV-R-DFQS 164 (410)
Q Consensus 88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~g~~ 164 (410)
+||+||||+.++ ++|+++|+.|||+|+.++.. .++++++.+.+++++.+ .+| +.+||+|+. + .||+
T Consensus 199 ~~~~VvvP~~~s---~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~--g~~------~~~qy~Np~n~~ah~~ 267 (429)
T PLN03013 199 YRLILTMPASMS---MERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTP--DAY------MLQQFDNPANPKIHYE 267 (429)
T ss_pred CCEEEEECCCCc---HHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcC--CeE------eCCCCCCHHHHHHHHH
Confidence 999999999988 58999999999999999743 26778888888876541 122 357777663 3 5999
Q ss_pred hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
|+|+||++|+. ..||+||+|+||||+++|+...|. +..|+++|+.
T Consensus 268 ttg~EI~eq~~---~~~D~vV~~vGtGGtisGiar~lK------e~~P~vkVig 312 (429)
T PLN03013 268 TTGPEIWDDTK---GKVDIFVAGIGTGGTITGVGRFIK------EKNPKTQVIG 312 (429)
T ss_pred HHHHHHHHhcC---CCCCEEEEeCCccHHHHHHHHHHH------hhCCCCEEEE
Confidence 99999999953 258999999999999999966554 3445778884
No 57
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=4.6e-35 Score=294.84 Aligned_cols=193 Identities=17% Similarity=0.181 Sum_probs=156.8
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
-.++|||+++++|++.+|..+||+|+|++|||||||||.+...+..+.+.+.+.+++ +|+||||+|+|++|+++|++|+
T Consensus 86 ~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~~vv~-aSsGN~g~alA~~aa~~Gl~~~ 164 (421)
T PRK07591 86 GPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGFTTVAC-ASTGNLANSVAAHAARAGLDSC 164 (421)
T ss_pred CCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCCCEEEE-eCCCHHHHHHHHHHHHcCCCEE
Confidence 346799999999999885579999999999999999998877777777777766655 6999999999999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHHH
Q psy11239 92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIH 171 (410)
Q Consensus 92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI~ 171 (410)
||||+.++ +.|+.+|+.|||+|+.++ ++++++.+.+.+.+++.+ .+|+.+. +.+|| .++|++|+++||+
T Consensus 165 I~vP~~~~---~~k~~~~~~~GA~Vi~v~-g~~d~a~~~a~~~~~~~~--~~~~~n~--~~~p~---~ieG~~Tia~Ei~ 233 (421)
T PRK07591 165 VFIPADLE---AGKIVGTLVYGPTLVAVD-GNYDDVNRLCSELANEHE--GWGFVNI--NLRPY---YAEGSKTLGYEVA 233 (421)
T ss_pred EEEcCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhcC--CEEEecC--CCCcc---cccchHHHHHHHH
Confidence 99999877 589999999999999998 789999888888776541 2343332 24555 4689999999999
Q ss_pred HhhhhcCCCccEEEEecCCCCceeecccccccccccccc-ccCceeEE
Q psy11239 172 QQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNI-LKGSKIFL 218 (410)
Q Consensus 172 ~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~-~~~~~v~~ 218 (410)
+|++ +..||+||+|+|+||+++|+..+|.++..+... .+..+|+.
T Consensus 234 eQl~--~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~ 279 (421)
T PRK07591 234 EQLG--WRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFG 279 (421)
T ss_pred HHcC--CCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEE
Confidence 9964 335999999999999999999998765433211 12356663
No 58
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.3e-35 Score=294.66 Aligned_cols=193 Identities=15% Similarity=0.126 Sum_probs=158.6
Q ss_pred cccccccccccccccc-------CceeEEeecCCCC-CchhhHHHHHHHHHH-----HHHcCC-----------------
Q psy11239 197 RPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK----------------- 246 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~-------~~~v~~K~e~~~p-tgS~K~R~a~~~~~~-----a~~~g~----------------- 246 (410)
..|||++++.|+...+ +.+||+|+|.+|| |||||+|++++++.. +++.|.
T Consensus 51 ~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~ 130 (404)
T cd06447 51 IESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRK 130 (404)
T ss_pred cCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhh
Confidence 4899999998887652 3799999999999 999999999998863 444444
Q ss_pred ---CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCC
Q psy11239 247 ---KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNIL 323 (410)
Q Consensus 247 ---~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~ 323 (410)
...|+++|+||||+++|++|+.+|++|+||||++.++ .|++.|+.+||+|+.++ ++++++.+.+.+++++.
T Consensus 131 ~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~---~K~~~ira~GAeVv~v~-~~~~~a~~~a~~la~~~-- 204 (404)
T cd06447 131 LFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQ---WKKDKLRSKGVTVVEYE-TDYSKAVEEGRKQAAAD-- 204 (404)
T ss_pred cccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcH---HHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHHC--
Confidence 1246679999999999999999999999999986554 88999999999999995 55999999998888765
Q ss_pred CceEEecCCCCCCCChh-HHHhhhhhHHHHHHHhhhhcCC-----CCCEEEEccCchhHHHHHHHHHhcC---CCeEEEE
Q psy11239 324 NSHYLIGTASGPHPYPT-IVRDFQSIIGYEIHQQLNFNFY-----NKKYILACVGGGSNALGIFYTFINS---NFKLVAI 394 (410)
Q Consensus 324 ~~~~~~~~~~~~~~~~~-~~~~g~~t~g~Ei~~q~~~~~~-----~~d~iv~~vGtGg~~~Gi~~~~~~~---~~~vigV 394 (410)
+..|++ ++|++ ++.+||+|+|.||++|++..+. .||+||+|+|+||+++|++++|++. +++||+|
T Consensus 205 ~~~~~v------~~~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigV 278 (404)
T cd06447 205 PMCYFV------DDENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFA 278 (404)
T ss_pred CCeEeC------CCCCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEE
Confidence 233443 44422 3789999999999999963222 3668999999999999999999863 7999999
Q ss_pred ccCCCCc
Q psy11239 395 ESGGISK 401 (410)
Q Consensus 395 e~~g~~~ 401 (410)
||++++.
T Consensus 279 eP~~ap~ 285 (404)
T cd06447 279 EPTHSPC 285 (404)
T ss_pred ccCCChH
Confidence 9999863
No 59
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.2e-36 Score=308.75 Aligned_cols=173 Identities=24% Similarity=0.287 Sum_probs=148.1
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHH-HHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLL-AKFLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~-~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+.. ..+.+.+++|+ +|+||||+++|++|+.+|+||
T Consensus 34 ~v~~TPL~~~~~Ls~~~-g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~-aSaGNha~gvA~aA~~lGi~~ 111 (521)
T PRK12483 34 VARETPLQRAPNLSARL-GNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVIT-ASAGNHAQGVALAAARLGVKA 111 (521)
T ss_pred hcCCCCeeEchhhhHhh-CCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEE-ECCCHHHHHHHHHHHHhCCCE
Confidence 46799999999999887 6899999999999999999988655443 22344455555 699999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E 169 (410)
+||||+.+| +.|+..++.|||+|+.++ ++++++++.+.+++++. + ..+.|||+++ .++||+|+|.|
T Consensus 112 ~IvmP~~tp---~~Kv~~~r~~GAeVil~g-~~~d~a~~~A~~la~e~--g-------~~~v~pfdd~~viaGqgTig~E 178 (521)
T PRK12483 112 VIVMPRTTP---QLKVDGVRAHGGEVVLHG-ESFPDALAHALKLAEEE--G-------LTFVPPFDDPDVIAGQGTVAME 178 (521)
T ss_pred EEEECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--C-------CeeeCCCCChHHHHHHHHHHHH
Confidence 999999998 489999999999999997 68999999999988765 2 2346899888 58999999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeecccccc
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIY 202 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~ 202 (410)
|++|++ + .||+||+|+|+||+++|+.+.+.
T Consensus 179 I~eQ~~--~-~~D~VvvpvGgGGliaGia~~~K 208 (521)
T PRK12483 179 ILRQHP--G-PLDAIFVPVGGGGLIAGIAAYVK 208 (521)
T ss_pred HHHHhC--C-CCCEEEEecCccHHHHHHHHHHH
Confidence 999964 2 48999999999999999977654
No 60
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=2.4e-36 Score=303.91 Aligned_cols=174 Identities=25% Similarity=0.335 Sum_probs=148.8
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
.+.+|||+++++|++.+ +.+||+|+|++|||||||||.+...+....+.+....|+++|+||||+++|++|+.+|+||+
T Consensus 19 ~i~~TPl~~~~~ls~~~-g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ 97 (404)
T PRK08198 19 VVRRTPLEYSRTLSELT-GAEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQGVAYAASLLGIKAT 97 (404)
T ss_pred cCCCCCceehhhHHHHh-CCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEE
Confidence 56899999999999887 68999999999999999999887766555544444456667999999999999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239 92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI 170 (410)
||||+.++ +.|+++|+.|||+|+.++ ++++++++.+.+++++. +. .+.+||+++ .+.||+|+|+||
T Consensus 98 iv~p~~~~---~~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~~~~~~--g~-------~~~~~~~~~~~~~g~~t~a~EI 164 (404)
T PRK08198 98 IVMPETAP---LSKVKATRSYGAEVVLHG-DVYDEALAKAQELAEET--GA-------TFVHPFDDPDVIAGQGTIGLEI 164 (404)
T ss_pred EEECCCCC---HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EecCCCCCccHHHHHHHHHHHH
Confidence 99999988 589999999999999997 67999999998887764 22 336788777 478999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
++|++ .+|+||+|+||||+++|+...|..
T Consensus 165 ~~q~~----~~d~vv~~vG~GG~~~Gi~~~~k~ 193 (404)
T PRK08198 165 LEDLP----DVDTVVVPIGGGGLISGVATAVKA 193 (404)
T ss_pred HHhCC----CCCEEEEEeCHhHHHHHHHHHHHH
Confidence 99964 489999999999999999777654
No 61
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1e-35 Score=293.14 Aligned_cols=187 Identities=22% Similarity=0.253 Sum_probs=159.5
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||+++++|.... +.+||+|+|++|||||||+|++.+++..+.++|.+++ +++|+||||+|+|++|+.+|++|+|||
T Consensus 28 ~TPL~~~~~l~~~~-g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~v-V~aSsGN~G~AlA~~aa~~G~~~~ivv 105 (351)
T PRK06352 28 NTPLIPLPNLSKEL-GVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAEAV-ICASTGNTSAAAAAYATRAGLKAYIVI 105 (351)
T ss_pred CCCeeEcHhhHHHh-CCeEEEEecCCCCccChHHHHHHHHHHHHHHCCCCEE-EEECCcHHHHHHHHHHHHcCCcEEEEE
Confidence 89999999998776 5799999999999999999999999999999888765 559999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|+...+ +.|+.+|+++||+|+.++ ++++++.+.+.+..++. + +|..+ .. ||+ ...|++|++.||++|+
T Consensus 106 p~~~~~--~~k~~~~~a~GA~V~~~~-~~~~~~~~~a~~~~~~~--~-~~~~~-~~--n~~---~~~G~~t~~~EI~~Q~ 173 (351)
T PRK06352 106 PEGKVA--LGKLAQAVMYGADIISIQ-GNFDEALKSVRELAETE--A-VTLVN-SV--NPY---RLEGQKTAAFEICEQL 173 (351)
T ss_pred eCCCCc--HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc--C-ccccc-CC--Ccc---ceeeHHHHHHHHHHHc
Confidence 985433 478889999999999996 55888888888877664 2 33332 22 333 4679999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhcC--C-----CeEEEEccCCCCc
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFINS--N-----FKLVAIESGGISK 401 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~-----~~vigVe~~g~~~ 401 (410)
. ..||+||+|+|+||+++|++++|++. + +|||+|||++++.
T Consensus 174 ~---~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~ 221 (351)
T PRK06352 174 G---SAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAA 221 (351)
T ss_pred C---CCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCH
Confidence 4 57999999999999999999999864 3 8999999999863
No 62
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1.9e-35 Score=288.54 Aligned_cols=189 Identities=26% Similarity=0.293 Sum_probs=161.0
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||+++++|....+..+||+|+|++||+||||+|++.+++..++++|.+++| ++|+||||+|+|++|+.+|++|+|||
T Consensus 15 ~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~lv-~aSsGN~g~alA~~aa~~G~~~~ivv 93 (319)
T PRK06381 15 GTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGIT-VGTCGNYGASIAYFARLYGLKAVIFI 93 (319)
T ss_pred CCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCCCEEE-EeCCcHHHHHHHHHHHHcCCcEEEEE
Confidence 79999999998777447999999999999999999999999999999987765 49999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|+..+ +.++++|+.+||+|+.++ ++++++.+.+.+..++. + +|+++++.. ++ .....|++|++.||++|+
T Consensus 94 p~~~~---~~~~~~l~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~-~~~~~~~~~-n~--~~~~~G~~t~a~Ei~~ql 163 (319)
T PRK06381 94 PRSYS---NSRVKEMEKYGAEIIYVD-GKYEEAVERSRKFAKEN--G-IYDANPGSV-NS--VVDIEAYSAIAYEIYEAL 163 (319)
T ss_pred CCCCC---HHHHHHHHHcCCEEEEcC-CCHHHHHHHHHHHHHHc--C-cEecCCCCC-Cc--chHhhhHHHHHHHHHHHh
Confidence 98644 378899999999999996 45888888888887764 3 455433221 11 124679999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhc--------CCCeEEEEccCCCC
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFIN--------SNFKLVAIESGGIS 400 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--------~~~~vigVe~~g~~ 400 (410)
+ ..||+||+|+||||+++|++++|++ +.+|||+|||.+++
T Consensus 164 ~---~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~ 211 (319)
T PRK06381 164 G---DVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGN 211 (319)
T ss_pred C---CCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCC
Confidence 5 4699999999999999999999985 47999999999875
No 63
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=2.9e-35 Score=288.47 Aligned_cols=191 Identities=20% Similarity=0.178 Sum_probs=154.8
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|||++++++++.. +.+||+|+|++||+||||+|++.+++..+.+.+. +..|+++|+||||+|+|++|+++|++|+
T Consensus 13 ~TPL~~~~~l~~~~-g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~ 91 (330)
T PRK10717 13 NTPLIRLNRASEAT-GCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTV 91 (330)
T ss_pred CCceEEccccCCCC-CCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEE
Confidence 79999999998877 6899999999999999999999999999888775 2446669999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCCH-------HHHHHHHHHHHHccCCCceEEecCCCCCCCChh--HHHhh
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNL-------KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT--IVRDF 345 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g 345 (410)
||||+..++ .|+++++.+||+|+.++...+ +.+.+.+.+..++. +..+|++ +||++ ++..|
T Consensus 92 vv~p~~~~~---~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~-~~~~~~~------~~~~~~~~~~~g 161 (330)
T PRK10717 92 IVMPETQSQ---EKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASE-PNGAIWA------NQFDNPANREAH 161 (330)
T ss_pred EEeCCCCCH---HHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhC-CCCeEec------CCCCChhhHHHH
Confidence 999986543 789999999999999974312 22233333333322 1234554 44422 25689
Q ss_pred hhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 346 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 346 ~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
|+|++.||++|++ ..+|+||+|+||||+++|++.+|++. ++|||+|||++++.+
T Consensus 162 ~~t~a~Ei~~ql~---~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~ 217 (330)
T PRK10717 162 YETTGPEIWEQTD---GKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALY 217 (330)
T ss_pred HHhHHHHHHHhcC---CCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccc
Confidence 9999999999995 46899999999999999999999864 899999999998655
No 64
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=304.46 Aligned_cols=188 Identities=24% Similarity=0.319 Sum_probs=163.3
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..|||+++++|+... +.+||+|+|++||+||||+|+|.+.+.... +.+.+++| ++|+||||+++|++|+++|++|+|
T Consensus 19 ~~TPL~~~~~Ls~~~-g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV-~aSaGNha~avA~aa~~lGi~~~I 96 (504)
T PRK09224 19 QETPLEKAPKLSARL-GNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVI-TASAGNHAQGVALSAARLGIKAVI 96 (504)
T ss_pred CCCCceehhHhHHHh-CCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEE-EECcCHHHHHHHHHHHHcCCCEEE
Confidence 489999999998877 689999999999999999999999887554 44455555 599999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH 354 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~ 354 (410)
|||+.++. .|++.++.+||+|+.++ ++++++.+++.+..++. +.+|+ +||++. +++|++|+|.||+
T Consensus 97 vmP~~tp~---~K~~~~r~~GA~Vi~~g-~~~~~a~~~a~~l~~~~--g~~~v-------~~f~~~~~i~G~gTi~~EI~ 163 (504)
T PRK09224 97 VMPVTTPD---IKVDAVRAFGGEVVLHG-DSFDEAYAHAIELAEEE--GLTFI-------HPFDDPDVIAGQGTIAMEIL 163 (504)
T ss_pred EECCCCCH---HHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEe-------CCCCCcHHHHhHHHHHHHHH
Confidence 99986554 78899999999999985 45999999999888775 56666 777554 7889999999999
Q ss_pred HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
+|++ ..||+||+|+||||+++|++.+++.. ++|||||||++++..
T Consensus 164 ~q~~---~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~ 210 (504)
T PRK09224 164 QQHP---HPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACL 210 (504)
T ss_pred Hhcc---CCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 9995 35999999999999999999999864 899999999988754
No 65
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=3.7e-35 Score=283.04 Aligned_cols=192 Identities=21% Similarity=0.192 Sum_probs=159.1
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|||+++++|.+.. +.+||+|+|+.||+||||+|++.+.+..+.+.+. +..|+++|+||||+|+|++|+++|++|+
T Consensus 2 ~TPl~~~~~l~~~~-g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~ 80 (291)
T cd01561 2 NTPLVRLNRLSPGT-GAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFI 80 (291)
T ss_pred CCCEEEccccCCCC-CCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEE
Confidence 69999999998776 6899999999999999999999999999888776 2445669999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC---HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGY 351 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~ 351 (410)
||||+..+ +.|+++++.+||+|+.++... ++++.+.+.++.++. + .+|+++++. +|+ ++..|++|++.
T Consensus 81 i~vp~~~~---~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~--~p~--~~~g~~~t~~~ 151 (291)
T cd01561 81 IVMPETMS---EEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAET-P-NAFWLNQFE--NPA--NPEAHYETTAP 151 (291)
T ss_pred EEECCCCC---HHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhC-C-CcEEecCCC--Cch--HHHHHHHHHHH
Confidence 99998644 388999999999999996431 378888888776654 2 345543332 222 23444559999
Q ss_pred HHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 352 EIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 352 Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
||++|++ ..||+||+|+|+||+++|++.+|++. +++||+|||++++.+
T Consensus 152 Ei~~ql~---~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~ 201 (291)
T cd01561 152 EIWEQLD---GKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLF 201 (291)
T ss_pred HHHHHcC---CCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCccc
Confidence 9999995 37999999999999999999999875 899999999999876
No 66
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=5.2e-36 Score=292.54 Aligned_cols=192 Identities=24% Similarity=0.227 Sum_probs=157.4
Q ss_pred CCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCc
Q psy11239 10 PKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLE 89 (410)
Q Consensus 10 ~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~ 89 (410)
...+++|||+++++|++.+|..+||+|+|++|||||||||.+...+..+++.+...+ +++|+||||+|+|++|+.+|++
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~l-v~aSsGN~g~alA~~aa~~G~~ 88 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGI-TVGTCGNYGASIAYFARLYGLK 88 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCCCEE-EEeCCcHHHHHHHHHHHHcCCc
Confidence 346789999999999988855799999999999999999998888778888776555 4569999999999999999999
Q ss_pred EEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccc-cc--ccccchhH
Q psy11239 90 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYP-TI--VRDFQSII 166 (410)
Q Consensus 90 ~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~--~~~g~~ti 166 (410)
|+||||..++ +.|+++|+.|||+|+.++ ++++++++.+.+++++. .+|+ .+||+ |+ .+.||+|+
T Consensus 89 ~~ivvp~~~~---~~~~~~l~~~GA~V~~~~-~~~~~~~~~a~~~~~~~---~~~~------~~~~~~n~~~~~~G~~t~ 155 (319)
T PRK06381 89 AVIFIPRSYS---NSRVKEMEKYGAEIIYVD-GKYEEAVERSRKFAKEN---GIYD------ANPGSVNSVVDIEAYSAI 155 (319)
T ss_pred EEEEECCCCC---HHHHHHHHHcCCEEEEcC-CCHHHHHHHHHHHHHHc---CcEe------cCCCCCCcchHhhhHHHH
Confidence 9999999877 489999999999999998 67888888888887653 2332 34553 33 37899999
Q ss_pred HHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 167 GYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 167 ~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
++||++|++ ..||+||+|+|+||+++|+..+|.+...+....+.++|+.
T Consensus 156 a~Ei~~ql~---~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vig 204 (319)
T PRK06381 156 AYEIYEALG---DVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIG 204 (319)
T ss_pred HHHHHHHhC---CCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEE
Confidence 999999974 3599999999999999999888876543322223466664
No 67
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=3e-36 Score=302.72 Aligned_cols=182 Identities=21% Similarity=0.215 Sum_probs=151.1
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhc-CCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK-KKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~-~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
...+|||+++++|++.+ +.+||+|+|++|||||||||++...+....+.+ .+++ +++||||||+|+|++|+.+|++|
T Consensus 22 ~i~~TPl~~~~~ls~~~-g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~~~gv-v~aSsGN~g~a~A~aa~~~G~~~ 99 (406)
T PRK06382 22 YLNRTPLIHSTTFGDEY-GGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNGV-ITASAGNHAQGVAYAASINGIDA 99 (406)
T ss_pred cCCCCCeeEhhhhHHHh-CCEEEEEecCCCCCCCCHHHHHHHHHHhcchhccCCeE-EEECCCHHHHHHHHHHHHcCCCE
Confidence 56899999999999887 579999999999999999998866654443333 2344 45699999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E 169 (410)
+||||+.++ +.|++.++.|||+|+.++ ++++++.+.+.+++++. +. .+.+||+++ .++||+|+++|
T Consensus 100 ~ivmp~~~~---~~k~~~~~~~GA~Vv~~~-~~~~~a~~~a~~la~~~--~~-------~~v~~~~~~~~i~g~~t~~~E 166 (406)
T PRK06382 100 KIVMPEYTI---PQKVNAVEAYGAHVILTG-RDYDEAHRYADKIAMDE--NR-------TFIEAFNDRWVISGQGTIGLE 166 (406)
T ss_pred EEEEcCCCH---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EecCccCChHHHHHHHHHHHH
Confidence 999999987 489999999999999987 67999999888887754 22 346888876 57999999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
|++|++ .||+||+|+|+||+++|+...+... .+.++|+.
T Consensus 167 i~eq~~----~~d~vvvpvG~GG~~~Gv~~~~k~~------~p~~~vig 205 (406)
T PRK06382 167 IMEDLP----DLDQIIVPVGGGGLISGIALAAKHI------NPNVKIIG 205 (406)
T ss_pred HHHhcC----CCCEEEEeeChHHHHHHHHHHHHHh------CCCCEEEE
Confidence 999964 4899999999999999997766432 24677774
No 68
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2e-35 Score=287.75 Aligned_cols=187 Identities=24% Similarity=0.318 Sum_probs=158.1
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHH-cCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF-LKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~-~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
.+|||+++++|.+.. +.+||+|+|++|||||||+|.+.+++....+ .+.+++ +++|+||||+++|++|+++|++|+|
T Consensus 19 ~~TPLv~~~~l~~~~-g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~~~~v-v~aSsGN~g~alA~~a~~~G~~~~i 96 (317)
T PRK06815 19 RVTPLEHSPLLSQHT-GCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGV-ITASSGNHGQGVALAAKLAGIPVTV 96 (317)
T ss_pred CCCCccccHhHHHhh-CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhcCceE-EEECCChHHHHHHHHHHHhCCCEEE
Confidence 389999999988776 6899999999999999999999988875432 233445 5599999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH 354 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~ 354 (410)
|||+..+ +.++.+++.+||+|+.++ ++++++...+.+..++. +.+|+ +||++. ...|++|++.||+
T Consensus 97 ~~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~~~~~-------~~~~~~~~~~g~~t~a~Ei~ 163 (317)
T PRK06815 97 YAPEQAS---AIKLDAIRALGAEVRLYG-GDALNAELAARRAAEQQ--GKVYI-------SPYNDPQVIAGQGTIGMELV 163 (317)
T ss_pred EECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEe-------cCCCChhhhcchhHHHHHHH
Confidence 9998654 378999999999999996 45888888887777664 45665 455322 5689999999999
Q ss_pred HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
+|++ .||+||+|+||||+++|++.++++. ++|||||||++++.+
T Consensus 164 ~q~~----~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~ 209 (317)
T PRK06815 164 EQQP----DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSL 209 (317)
T ss_pred HhcC----CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcH
Confidence 9995 5999999999999999999999865 899999999998754
No 69
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=4.2e-35 Score=299.49 Aligned_cols=183 Identities=26% Similarity=0.338 Sum_probs=153.2
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHH-HHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLL-AKFLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~-~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
...+|||+++++|++.+ +.+||+|+|++||+||||+|++...+.. .++.+.+++|+ +|+||||+++|++|+++|++|
T Consensus 14 ~i~~TPL~~~~~Ls~~~-g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~-aSaGNha~~vA~aa~~~Gi~~ 91 (499)
T TIGR01124 14 AAQETPLQKAAKLSERL-GNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIA-ASAGNHAQGVAFSAARLGLKA 91 (499)
T ss_pred ccCCCCeeehHHHHHHh-CCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEE-ECCCHHHHHHHHHHHHcCCCE
Confidence 56899999999999987 6799999999999999999987655443 34444455555 699999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E 169 (410)
+||||+.+| +.|++.++.|||+|+.++ ++++++...+.+++++. +. .+.+||++| .++||+|+|.|
T Consensus 92 ~IvmP~~tp---~~Kv~~~r~~GA~Vvl~g-~~~d~a~~~a~~la~~~--g~-------~~i~p~~~~~~i~G~gtig~E 158 (499)
T TIGR01124 92 LIVMPETTP---DIKVDAVRGFGGEVVLHG-ANFDDAKAKAIELSQEK--GL-------TFIHPFDDPLVIAGQGTLALE 158 (499)
T ss_pred EEEECCCCC---HHHHHHHHhCCCEEEEeC-cCHHHHHHHHHHHHHhc--CC-------EeeCCCCChHHHHhhHHHHHH
Confidence 999999998 489999999999999997 67999999998887764 22 347889887 58999999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
|++|++ ..+|+||+|+||||+++|+.+.+.. ..+.++|+.
T Consensus 159 I~~q~~---~~~D~vvvpvGgGGliaGia~~lk~------~~p~~kVIg 198 (499)
T TIGR01124 159 ILRQVA---NPLDAVFVPVGGGGLAAGVAALIKQ------LMPEIKVIG 198 (499)
T ss_pred HHHhCC---CCCCEEEEccCccHHHHHHHHHHHH------hCCCCEEEE
Confidence 999964 2589999999999999999776643 224677773
No 70
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=6.2e-36 Score=290.96 Aligned_cols=188 Identities=19% Similarity=0.232 Sum_probs=152.6
Q ss_pred hhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-HhcCCceEEEeCccHHHHHHHHHH
Q psy11239 5 DLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSC 83 (410)
Q Consensus 5 ~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~~~~~~~v~~~ssGN~g~a~A~~a 83 (410)
+.|.+ .+++|||+++++|++.+ +.+||+|+|++|||||||||.+...+.... +.+.++ |+++|+||||+|+|++|
T Consensus 11 ~~i~~--~i~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~-vv~aSsGN~g~alA~~a 86 (317)
T TIGR02991 11 ARISG--RVEETPLVESPSLSELC-GVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAG-VVAASTGNHGRALAYAA 86 (317)
T ss_pred HHHhC--cCCCCCceechhhHHhh-CCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhccCCe-EEEECCCHHHHHHHHHH
Confidence 34444 56899999999999877 579999999999999999998776655433 333344 55579999999999999
Q ss_pred HHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-cccc
Q psy11239 84 CLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDF 162 (410)
Q Consensus 84 ~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g 162 (410)
+.+|+||+||||+.++ +.|+++|+.|||+|+.++ ++++++.+.+.+++++. +. .+.+||+++ .++|
T Consensus 87 ~~~G~~~~v~~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g~-------~~~~~~~n~~~~~g 153 (317)
T TIGR02991 87 AEEGVRATICMSELVP---QNKVDEIRRLGAEVRIVG-RSQDDAQEEVERLVADR--GL-------TMLPPFDHPDIVAG 153 (317)
T ss_pred HHhCCCEEEEcCCCCC---HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CC-------EeeCCCCChHHHhh
Confidence 9999999999999887 589999999999999998 67888888888877653 22 235777666 4799
Q ss_pred chhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239 163 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK 219 (410)
Q Consensus 163 ~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K 219 (410)
|+|+++||++|+. .+|+||+|+|+||+++|+...|.+. .+.++|+.-
T Consensus 154 ~~t~a~Ei~~q~~----~~d~vvv~~G~Gg~~~Gi~~~~k~~------~p~~~vigv 200 (317)
T TIGR02991 154 QGTLGLEVVEQMP----DLATVLVPLSGGGLASGVAMAVKAA------RPDTRVIGV 200 (317)
T ss_pred HHHHHHHHHHhCC----CCCEEEEEcChhHHHHHHHHHHHHh------CCCCEEEEE
Confidence 9999999999963 3799999999999999997776542 246788853
No 71
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=4.1e-36 Score=300.01 Aligned_cols=170 Identities=25% Similarity=0.331 Sum_probs=147.4
Q ss_pred CcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEec
Q psy11239 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIG 95 (410)
Q Consensus 16 TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p 95 (410)
|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+....|+++|+||||+++|++|+.+|+||+||||
T Consensus 1 TPl~~~~~ls~~~-g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p 79 (380)
T TIGR01127 1 TPLIYSTTLSDIT-GSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMP 79 (380)
T ss_pred CCceehHHHHHHh-CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 8999999999887 689999999999999999999887766666555544566679999999999999999999999999
Q ss_pred cCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHHHHhh
Q psy11239 96 ENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQL 174 (410)
Q Consensus 96 ~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~~q~ 174 (410)
+.++ +.|+++|+.|||+|+.++ ++++++++.+.+++++. +. .+.+||+++ .++||+|+++||++|+
T Consensus 80 ~~~~---~~k~~~~~~~GA~V~~~~-~~~~~a~~~a~~~~~~~--~~-------~~~~~~~~~~~~~g~~t~~~Ei~~q~ 146 (380)
T TIGR01127 80 ESAP---PSKVKATKSYGAEVILHG-DDYDEAYAFATSLAEEE--GR-------VFVHPFDDEFVMAGQGTIGLEIMEDI 146 (380)
T ss_pred CCCc---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EecCCCCChhhhhhhHHHHHHHHHhC
Confidence 9988 589999999999999997 67999999998887764 22 236788776 5799999999999996
Q ss_pred hhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 175 NFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 175 ~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
+ .||+||+|+||||+++|+.+.|..
T Consensus 147 ~----~~D~vv~~vG~Gg~~aGi~~~~k~ 171 (380)
T TIGR01127 147 P----DVDTVIVPVGGGGLISGVASAAKQ 171 (380)
T ss_pred C----CCCEEEEEeChHHHHHHHHHHHHH
Confidence 4 489999999999999999887754
No 72
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=4.2e-35 Score=293.16 Aligned_cols=201 Identities=29% Similarity=0.484 Sum_probs=165.8
Q ss_pred eeccccccccccccccccC-ceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239 195 LGRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES 273 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~~~~-~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 273 (410)
.|.+|||+++++|.+.++. .+||+|+|++|||||||+|.+..++..+++.|.+++++++|+||||+|+|++|+.+|++|
T Consensus 65 ~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~~~vtetssGN~G~alA~aaa~~Gl~~ 144 (419)
T TIGR01415 65 IGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGSALSLAGALFGLEC 144 (419)
T ss_pred cCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHcCCcE
Confidence 4568999999999887742 699999999999999999999999999999999999888899999999999999999999
Q ss_pred EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHH------------------HHHHHHHHHHccCCCceEEecCCCCC
Q psy11239 274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKE------------------AMNEAIKDWSNNILNSHYLIGTASGP 335 (410)
Q Consensus 274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~------------------~~~~a~~~~~~~~~~~~~~~~~~~~~ 335 (410)
+||||..++..++.++.+|+.+||+|+.++.. +++ ++.++.+.++++ ++..|+.++..|
T Consensus 145 ~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~-~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~-~~~~y~~~~~~n- 221 (419)
T TIGR01415 145 KVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE-FTEFGREVLKEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSVLN- 221 (419)
T ss_pred EEEEeCCCcccCHHHHHHHHHcCCEEEEECCc-hhhHHHHhhhcccccccchHHHHHHHHHHHHhC-CCCEEEeCCCCc-
Confidence 99999754443356789999999999998643 333 356677776654 235677554432
Q ss_pred CCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc------CCCeEEEEccCCCCcCC
Q psy11239 336 HPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN------SNFKLVAIESGGISKKR 403 (410)
Q Consensus 336 ~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~------~~~~vigVe~~g~~~~~ 403 (410)
.+..|+.++|.||++|++..|..||+||+|+|+||+++|++.+|.+ .++|||+|||++++.+.
T Consensus 222 -----~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~ 290 (419)
T TIGR01415 222 -----HVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLT 290 (419)
T ss_pred -----HHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhh
Confidence 2567999999999999975455799999999999999999977731 27999999999987553
No 73
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=4.7e-35 Score=290.44 Aligned_cols=193 Identities=22% Similarity=0.159 Sum_probs=151.9
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcC---CCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g---~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|||+++++|.... +.+||+|+|++||+||||+|.+.+++..+.+.| .+++|+|+||||||+++|++|+.+|++|+
T Consensus 53 ~TPLv~~~~l~~~~-g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~ 131 (423)
T PLN02356 53 NTPLIRINSLSEAT-GCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYGCKCH 131 (423)
T ss_pred CCceEECccccccc-CCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEE
Confidence 79999999988766 689999999999999999999999999888765 35678889999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeC-----CC-H-HHHH---HHHHHHHHcc-----------------------
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQY-----GN-L-KEAM---NEAIKDWSNN----------------------- 321 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~-----g~-~-~~~~---~~a~~~~~~~----------------------- 321 (410)
||||+..++ .|++.|+.+||+|+.++. ++ + ..+. .++.+++++.
T Consensus 132 ivvP~~~s~---~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (423)
T PLN02356 132 VVIPDDVAI---EKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEK 208 (423)
T ss_pred EEECCCCcH---HHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 999986554 788999999999999853 22 2 1111 2233333221
Q ss_pred --------CCCceEEecCCCCCCCChh--HHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CC
Q psy11239 322 --------ILNSHYLIGTASGPHPYPT--IVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NF 389 (410)
Q Consensus 322 --------~~~~~~~~~~~~~~~~~~~--~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~ 389 (410)
..+ .|++ |||++ +...|+..+|.||++|++ ..+|+||+|+|||||++|+++++|+. ++
T Consensus 209 ~~~~~~~~~~~-~~~~------~q~~n~~n~~ahg~gTg~EI~eQl~---g~~D~vVv~vGtGGti~Gva~~lK~~~P~v 278 (423)
T PLN02356 209 ENSLFSSSCTG-GFFA------DQFENLANFRAHYEGTGPEIWEQTQ---GNLDAFVAAAGTGGTLAGVSRFLQEKNPNI 278 (423)
T ss_pred cccccccCCCC-cEec------CccCCcchHHHHHhhHHHHHHHhcC---CCCCEEEeCCCchHHHHHHHHHHHHhCCCC
Confidence 012 2333 55532 223444445999999995 47999999999999999999999975 99
Q ss_pred eEEEEccCCCCcCCc
Q psy11239 390 KLVAIESGGISKKRT 404 (410)
Q Consensus 390 ~vigVe~~g~~~~~~ 404 (410)
||++|||.+|.++.+
T Consensus 279 kVigVep~~s~~~~~ 293 (423)
T PLN02356 279 KCFLIDPPGSGLFNK 293 (423)
T ss_pred EEEEEecCCCccccc
Confidence 999999999886643
No 74
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-35 Score=297.13 Aligned_cols=187 Identities=20% Similarity=0.289 Sum_probs=160.0
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..|||+++++|++.. +.+||+|+|++|||||||+|++.+++..+. +.+.+++ +++|+||||+++|++|+++|++|+|
T Consensus 22 ~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~v-v~aSsGN~g~alA~~a~~~G~~~~i 99 (403)
T PRK07334 22 LRTPCVHSRTLSQIT-GAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGV-IAMSAGNHAQGVAYHAQRLGIPATI 99 (403)
T ss_pred CCCCccchHHHHHhh-CCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHhCCcE-EEECCcHHHHHHHHHHHHcCCCEEE
Confidence 389999999998777 679999999999999999999999988654 3334444 5699999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIH 354 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~ 354 (410)
|||+..++ .|+++++.+||+|+.++ ++++++.+.+.++.++. +.+|+ +||++. ..+|++|+|.||+
T Consensus 100 v~p~~~~~---~k~~~~~~~GA~v~~~~-~~~~~~~~~a~~l~~~~--~~~~~-------~~~~~~~~~~g~~t~~~Ei~ 166 (403)
T PRK07334 100 VMPRFTPT---VKVERTRGFGAEVVLHG-ETLDEARAHARELAEEE--GLTFV-------HPYDDPAVIAGQGTVALEML 166 (403)
T ss_pred EECCCCCH---HHHHHHHHcCCEEEEEC-cCHHHHHHHHHHHHHhc--CCEec-------CCCCCHHHHHhHHHHHHHHH
Confidence 99986554 78899999999999885 55899998888887765 45555 566322 6789999999999
Q ss_pred HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
+|++ .||+||+|+|+|||++|++++++.. ++|||||||++++.+
T Consensus 167 ~q~~----~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~ 212 (403)
T PRK07334 167 EDAP----DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSM 212 (403)
T ss_pred hcCC----CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchH
Confidence 9994 6999999999999999999999864 899999999998764
No 75
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=9.2e-36 Score=295.69 Aligned_cols=189 Identities=15% Similarity=0.089 Sum_probs=149.3
Q ss_pred CCCCcCccccccccccC-------CceEEEeeCCCCC-CCchhhhHHHHHHHH-----HHHhcC----------------
Q psy11239 13 GRPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK---------------- 63 (410)
Q Consensus 13 ~~~TPl~~~~~l~~~~~-------~~~i~~K~E~~np-tGS~K~R~~~~~~~~-----~~~~~~---------------- 63 (410)
..+|||+++++|++.+| +.+||+|+|++|| |||||||+++.++.. +++.+.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 68999999999988763 3799999999999 999999987655432 333222
Q ss_pred ----CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcc
Q psy11239 64 ----KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNI 139 (410)
Q Consensus 64 ----~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~ 139 (410)
...|+++||||||+|+|++|+.+|++|+||||++++ +.|+++|+.|||+|+.++ ++++++++.+.+++++.+
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~---~~K~~~ira~GAeVv~v~-~~~~~a~~~a~~la~~~~ 205 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAK---QWKKDKLRSKGVTVVEYE-TDYSKAVEEGRKQAAADP 205 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCc---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHHCC
Confidence 125666799999999999999999999999999988 599999999999999998 789999999988887641
Q ss_pred cCCcccccccccCcccccc-ccccchhHHHHHHHhhhhcC-----CCccEEEEecCCCCceeeccccccccccccccccC
Q psy11239 140 LNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQLNFNF-----YNKKYILACVGGGSNALGRPTPIYYCKNISNILKG 213 (410)
Q Consensus 140 ~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~~q~~~~~-----~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~ 213 (410)
..| +.+||+++ .++||+|+|+||++|+...+ ..||+||+|+|+||+++|+...|.+.. .++
T Consensus 206 --~~~------~v~~~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~-----~p~ 272 (404)
T cd06447 206 --MCY------FVDDENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIF-----GDN 272 (404)
T ss_pred --CeE------eCCCCCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhc-----CCC
Confidence 122 23455444 57999999999999975211 247799999999999999977664321 235
Q ss_pred ceeEE
Q psy11239 214 SKIFL 218 (410)
Q Consensus 214 ~~v~~ 218 (410)
++|+.
T Consensus 273 ~kVig 277 (404)
T cd06447 273 VHCFF 277 (404)
T ss_pred CEEEE
Confidence 67774
No 76
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=6.5e-36 Score=291.83 Aligned_cols=183 Identities=17% Similarity=0.155 Sum_probs=150.4
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC-CceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~-~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
.+++|||+++++|++.+ +.+||+|+|++|||||||||++...+..+.+.+. ...|+++|+||||+++|++|+++|++|
T Consensus 18 ~~~~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~ 96 (322)
T PRK06110 18 AMPPTPQYRWPLLAERL-GCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQSVAFAARRHGLAA 96 (322)
T ss_pred cCcCCCcccchhHHHHh-CCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCceEEEECCCHHHHHHHHHHHHcCCCE
Confidence 56899999999999887 5799999999999999999998776665554432 223566799999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 170 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI 170 (410)
+||||+.++ +.|+++|+.|||+|+.++ ++++++.+.+.++++++ +.+| .+||++..+.||+|+++||
T Consensus 97 ~ivvp~~~~---~~k~~~i~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~~~~-------~~~~~~~~~~G~~t~~~Ei 163 (322)
T PRK06110 97 TIVVPHGNS---VEKNAAMRALGAELIEHG-EDFQAAREEAARLAAER--GLHM-------VPSFHPDLVRGVATYALEL 163 (322)
T ss_pred EEEEcCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEE-------cCCCCChHHhccchHHHHH
Confidence 999999887 479999999999999997 68999999888887764 2222 3556444578999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
++|+. .+|+||+|+|+||+++|+...+.+. .+.++|+.
T Consensus 164 ~~q~~----~~D~vv~pvG~Gg~~~Gv~~~~k~~------~~~~~vi~ 201 (322)
T PRK06110 164 FRAVP----DLDVVYVPIGMGSGICGAIAARDAL------GLKTRIVG 201 (322)
T ss_pred HhhCC----CCCEEEEecCHHHHHHHHHHHHHHh------CCCCEEEE
Confidence 99964 4799999999999999997776432 23577774
No 77
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=5.5e-35 Score=289.96 Aligned_cols=184 Identities=21% Similarity=0.117 Sum_probs=139.1
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhc---CCceEEEeCccHHHHHHHHHHHHcCC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGAGMHGVSTATSCCLLNL 88 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~---~~~~v~~~ssGN~g~a~A~~a~~~G~ 88 (410)
..++|||+++++|+... +.+||+|+|++|||||||||.+...+..+.+.+ ++++|+++||||||+++|++|+.+|+
T Consensus 50 ~ig~TPLv~~~~l~~~~-g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~G~ 128 (423)
T PLN02356 50 AIGNTPLIRINSLSEAT-GCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYGC 128 (423)
T ss_pred hcCCCceEECccccccc-CCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence 35799999999998876 689999999999999999999877766666544 45688888999999999999999999
Q ss_pred cEEEEeccCCccccchhHHHHHhcCCEEEEEeC-----C-CH-HHHH---HHHHHHHhhccc----CCcccc--------
Q psy11239 89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY-----G-NL-KEAM---NEAIKDWSNNIL----NSHYLI-------- 146 (410)
Q Consensus 89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~-----g-~~-~~~~---~~~~~~~~~~~~----~~~~~~-------- 146 (410)
+|+||||+.++ ++|+++|+.|||+|+.++. + ++ ..+. .++.+++++... ..++++
T Consensus 129 ~~~ivvP~~~s---~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~ 205 (423)
T PLN02356 129 KCHVVIPDDVA---IEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISE 205 (423)
T ss_pred cEEEEECCCCc---HHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence 99999999988 5899999999999999963 1 22 1111 223333332100 001111
Q ss_pred ------------cccccCccccccc---cccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 147 ------------GTASGPHPYPTIV---RDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 147 ------------~~~~~~~p~~~~~---~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
.+..+.+||+|+. .++++| |+||++|++ + .+|+||+|+||||+++|+.+.|.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gT-g~EI~eQl~--g-~~D~vVv~vGtGGti~Gva~~lK~ 273 (423)
T PLN02356 206 EEKENSLFSSSCTGGFFADQFENLANFRAHYEGT-GPEIWEQTQ--G-NLDAFVAAAGTGGTLAGVSRFLQE 273 (423)
T ss_pred ccccccccccCCCCcEecCccCCcchHHHHHhhH-HHHHHHhcC--C-CCCEEEeCCCchHHHHHHHHHHHH
Confidence 1234568888763 455665 999999963 2 589999999999999999666543
No 78
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=3.3e-35 Score=295.87 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=163.1
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||+++++|++.++..+||+|+|+.|||||||||++..++..+.+.|.+.++ ++|+||||+|+|++|+++|++|+|||
T Consensus 89 ~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~~vv-~aSsGN~g~alA~~aa~~Gl~~~I~v 167 (421)
T PRK07591 89 FTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGFTTVA-CASTGNLANSVAAHAARAGLDSCVFI 167 (421)
T ss_pred CCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCCCEEE-EeCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 59999999998887446999999999999999999999999999999988775 59999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|+..+ +.|+.+++.+||+|+.++ ++++++.+.+.+..++. ..+|+.++.. +|| ..+|++|+++||++|+
T Consensus 168 P~~~~---~~k~~~~~~~GA~Vi~v~-g~~d~a~~~a~~~~~~~--~~~~~~n~~~--~p~---~ieG~~Tia~Ei~eQl 236 (421)
T PRK07591 168 PADLE---AGKIVGTLVYGPTLVAVD-GNYDDVNRLCSELANEH--EGWGFVNINL--RPY---YAEGSKTLGYEVAEQL 236 (421)
T ss_pred cCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCEEEecCCC--Ccc---cccchHHHHHHHHHHc
Confidence 98644 378999999999999996 66888888888877654 1345554432 555 3689999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhc---------CCCeEEEEccCCCCcC
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFIN---------SNFKLVAIESGGISKK 402 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~---------~~~~vigVe~~g~~~~ 402 (410)
+ +..||+||+|+|+||+++|++.+|++ +.+|||+|||++++..
T Consensus 237 ~--~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~ 288 (421)
T PRK07591 237 G--WRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPI 288 (421)
T ss_pred C--CCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHH
Confidence 6 34599999999999999999999985 3689999999997543
No 79
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=3.5e-35 Score=284.96 Aligned_cols=184 Identities=23% Similarity=0.335 Sum_probs=156.0
Q ss_pred ccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIY 276 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv 276 (410)
..|||++++.+... +.+||+|+|++|||||||+|++.+++..+++ +.++ |+++|+||||+++|++|+++|++|+||
T Consensus 22 ~~TPl~~~~~l~~~--~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~~~~-vv~aSsGN~g~a~A~~a~~~G~~~~iv 97 (310)
T PRK08246 22 RRTPVLEADGAGFG--PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-PAAG-VVAASGGNAGLAVAYAAAALGVPATVF 97 (310)
T ss_pred CCCCeeeccccccC--CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-cCCe-EEEeCCCHHHHHHHHHHHHcCCCEEEE
Confidence 38999999888643 4799999999999999999999998877665 4444 456999999999999999999999999
Q ss_pred EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239 277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ 355 (410)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~ 355 (410)
||+..++ .++.+++.+||+|+.++ ++++++++.+.+.+++. +.+|+ +||++. ...|++|+|+||++
T Consensus 98 ~p~~~~~---~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g~~~~-------~~~~n~~~i~g~~t~~~Ei~e 164 (310)
T PRK08246 98 VPETAPP---AKVARLRALGAEVVVVG-AEYADALEAAQAFAAET--GALLC-------HAYDQPEVLAGAGTLGLEIEE 164 (310)
T ss_pred ECCCCcH---HHHHHHHHCCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEeC-------CCCCChhhhcchHHHHHHHHH
Confidence 9986443 78899999999999985 45888888888877765 44444 565333 57899999999999
Q ss_pred hhhhcCCCCCEEEEccCchhHHHHHHHHHhcCCCeEEEEccCCCCcC
Q psy11239 356 QLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGISKK 402 (410)
Q Consensus 356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~~~~vigVe~~g~~~~ 402 (410)
|++ .||+||+|+|+||+++|++.+|+. .+|||+|||++++.+
T Consensus 165 q~~----~~D~iv~~vG~GG~~~Gi~~~~~~-~~~vi~ve~~~~~~~ 206 (310)
T PRK08246 165 QAP----GVDTVLVAVGGGGLIAGIAAWFEG-RARVVAVEPEGAPTL 206 (310)
T ss_pred hcC----CCCEEEEecCccHHHHHHHHHhcC-CCEEEEEeeCCChHH
Confidence 994 699999999999999999999965 599999999998764
No 80
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=1.1e-35 Score=290.42 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=148.7
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+....+.+....|+++|+||||+|+|++|+.+|+||+
T Consensus 21 ~~~~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ 99 (321)
T PRK07048 21 VAHRTPVLTSRTADART-GAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRAGVVTFSSGNHAQAIALSARLLGIPAT 99 (321)
T ss_pred CCCCCCCccchhhHHhc-CCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhcCCcEEEeCCCHHHHHHHHHHHHcCCCEE
Confidence 56799999999998776 68999999999999999999877665544433223345567999999999999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239 92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI 170 (410)
||||+.++ +.|+.+|+.|||+|+.++ ++++++.+.+.++.++. +.+ +.+||+++ .+.|++|+++||
T Consensus 100 vvvp~~~~---~~k~~~~~~~GAeV~~~~-~~~~~~~~~a~~l~~~~--g~~-------~~~~~~~~~~~~g~~t~~~EI 166 (321)
T PRK07048 100 IVMPQDAP---AAKVAATRGYGGEVVTYD-RYTEDREEIGRRLAEER--GLT-------LIPPYDHPHVIAGQGTAAKEL 166 (321)
T ss_pred EEECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCE-------EECCCCCcchhhccchHHHHH
Confidence 99999887 589999999999999998 67778877777776653 222 35677655 478999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
++|++ .||+||+|+|+||+++|+...+.+. .+.++|+.
T Consensus 167 ~~q~~----~~D~vv~~vGtGG~~~Gi~~~~k~~------~~~~~vig 204 (321)
T PRK07048 167 FEEVG----PLDALFVCLGGGGLLSGCALAARAL------SPGCKVYG 204 (321)
T ss_pred HhhcC----CCCEEEEecChhHHHHHHHHHHHHh------CCCCEEEE
Confidence 99964 5999999999999999997766432 24678874
No 81
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=6.6e-35 Score=287.95 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=146.0
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---C-ceEEEeCccHHHHHHHHHHHHcC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLN 87 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~-~~v~~~ssGN~g~a~A~~a~~~G 87 (410)
..++|||+++++++... +.+||+|+|++|||||||||.+...+..+.+.+. + .+|+++||||||+|+|++|+.+|
T Consensus 56 ~ig~TPl~~l~~l~~~~-g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G 134 (368)
T PLN02556 56 LIGKTPLVYLNKVTEGC-GAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKG 134 (368)
T ss_pred hcCCCccEEcccccccc-CCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcC
Confidence 45799999999988765 6899999999999999999998877666766653 2 46777899999999999999999
Q ss_pred CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc-c-ccch
Q psy11239 88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV-R-DFQS 164 (410)
Q Consensus 88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~g~~ 164 (410)
++|+||||+.++ ++|+.+|+.|||+|+.++.. .+..+++++.+++++.+ + + .+.+||+|+. . .||.
T Consensus 135 ~~~~ivvp~~~~---~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~-~-~------~~~~q~~np~~~~~g~~ 203 (368)
T PLN02556 135 YKMILTMPSYTS---LERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTP-D-A------FMLQQFSNPANTQVHFE 203 (368)
T ss_pred CCEEEEECCCCC---HHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcC-C-C------CccCCCCCHHHHHHHHH
Confidence 999999999887 58999999999999999732 24567778877776542 1 2 2357777773 3 5999
Q ss_pred hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
++++||++|.. + .+|+||+|+|||||++|+...|.+
T Consensus 204 ttg~EI~eq~~--~-~~D~vV~~vGtGGt~aGv~~~lk~ 239 (368)
T PLN02556 204 TTGPEIWEDTL--G-QVDIFVMGIGSGGTVSGVGKYLKS 239 (368)
T ss_pred HHHHHHHHhcC--C-CCCEEEEcCCcchHHHHHHHHHHH
Confidence 99999999942 3 589999999999999999777754
No 82
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=3.3e-35 Score=294.19 Aligned_cols=190 Identities=24% Similarity=0.331 Sum_probs=163.4
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||+++++|.+.++..+||+|+|++|||||||||++.+++..+.+.|.+++|+ +|+||||+|+|++|+++|++|+|||
T Consensus 79 ~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~v~v 157 (394)
T PRK08197 79 MTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVKHLAM-PTNGNAGAAWAAYAARAGIRATIFM 157 (394)
T ss_pred CCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEE
Confidence 799999999887774369999999999999999999999999999988877655 9999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|++.++ .|+.+++++||+|+.++ ++++++.+.+.+.+++. + +|..+++. ||| ..+|++|++.||++|+
T Consensus 158 p~~~~~---~k~~~~~~~GA~Vi~v~-~~~~~~~~~a~~~~~~~--g-~~~~~~~~--np~---~ieG~~t~a~Ei~eQl 225 (394)
T PRK08197 158 PADAPE---ITRLECALAGAELYLVD-GLISDAGKIVAEAVAEY--G-WFDVSTLK--EPY---RIEGKKTMGLELAEQL 225 (394)
T ss_pred cCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--C-cccccCCC--Ccc---chhcHHHHHHHHHHHc
Confidence 986544 78999999999999995 56888888888877664 3 45555444 444 3679999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhc---------CCCeEEEEccCCCCcC
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFIN---------SNFKLVAIESGGISKK 402 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~---------~~~~vigVe~~g~~~~ 402 (410)
+ +..||+||+|+|+||+++|++++|++ ..+|||+|||++++.+
T Consensus 226 ~--~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l 277 (394)
T PRK08197 226 G--WRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPI 277 (394)
T ss_pred C--CCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHH
Confidence 6 34599999999999999999999985 3699999999998654
No 83
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.7e-35 Score=295.93 Aligned_cols=195 Identities=30% Similarity=0.461 Sum_probs=157.9
Q ss_pred CCCcCccccccccccCC-ceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEE
Q psy11239 14 RPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII 92 (410)
Q Consensus 14 ~~TPl~~~~~l~~~~~~-~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~i 92 (410)
++|||+++++|.+.+|. .+||+|+|++|||||||||.++.++..+++.+...+++++|+||||+|+|++|+.+|++|+|
T Consensus 67 ~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~~~vtetssGN~G~alA~aaa~~Gl~~~V 146 (419)
T TIGR01415 67 RPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGSALSLAGALFGLECKV 146 (419)
T ss_pred CCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHcCCcEEE
Confidence 69999999999988753 69999999999999999999999988889989888888878999999999999999999999
Q ss_pred EeccCCccccchhHHHHHhcCCEEEEEeCCCHHH------------------HHHHHHHHHhhcccCCcccccccccCcc
Q psy11239 93 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKE------------------AMNEAIKDWSNNILNSHYLIGTASGPHP 154 (410)
Q Consensus 93 v~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p 154 (410)
|||+.++.+++.|+.+|+.|||+|+.++ +++++ ++.++.+++.+. .+..|++++.
T Consensus 147 ~mp~~s~~~k~~k~~~m~~~GA~Vi~~~-~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~-~~~~y~~~~~----- 219 (419)
T TIGR01415 147 FMVRVSFNQKPYRKYLMELYGAEVIPSP-SEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSV----- 219 (419)
T ss_pred EEeCCCcccCHHHHHHHHHcCCEEEEEC-CchhhHHHHhhhcccccccchHHHHHHHHHHHHhC-CCCEEEeCCC-----
Confidence 9999766556789999999999999998 44433 355666666553 2345655443
Q ss_pred ccccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 155 YPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 155 ~~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
.|+...||+++|+||++|++..+..||+||+|+|+||+++|+..||.+.. +... +.++|+.
T Consensus 220 -~n~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~-l~g~-~~~rvia 280 (419)
T TIGR01415 220 -LNHVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADK-LSGK-IDRRFIA 280 (419)
T ss_pred -CcHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHH-hcCC-CCCEEEE
Confidence 22345789999999999987555569999999999999999999986532 2211 2567775
No 84
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.4e-35 Score=289.34 Aligned_cols=173 Identities=21% Similarity=0.241 Sum_probs=146.2
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
...+|||++++.+ +||+|+|++|||||||||++...+..+.+.+...-|+++|+||||+|+|++|+.+|++|+
T Consensus 36 ~i~~TPL~~~~~l-------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~ 108 (349)
T PRK08813 36 YLSPTPLHYAERF-------GVWLKLENLQRTGSYKVRGALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAI 108 (349)
T ss_pred cCCCCCeEECCCC-------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEE
Confidence 5689999998653 399999999999999999988887777777665445567999999999999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239 92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI 170 (410)
||||+.++ +.|+++|+.|||+|+.++ ++|+++.+.+.+++++. +. .+.+||+++ .++||+|+|+||
T Consensus 109 IvvP~~~~---~~K~~~i~~~GAeVv~~g-~~~~~a~~~a~~la~~~--g~-------~~v~~~~np~~i~G~~Tig~EI 175 (349)
T PRK08813 109 TVMPHGAP---QTKIAGVAHWGATVRQHG-NSYDEAYAFARELADQN--GY-------RFLSAFDDPDVIAGQGTVGIEL 175 (349)
T ss_pred EEEcCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EEcCccCChHHHHHHHHHHHHH
Confidence 99999988 589999999999999997 78999999998887754 22 346788777 589999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
++| .||+||+|+|+||+++|+...|.+ ++++|+.
T Consensus 176 ~e~------~pD~VvvpvGgGGliaGia~~lk~--------~~~rVig 209 (349)
T PRK08813 176 AAH------APDVVIVPIGGGGLASGVALALKS--------QGVRVVG 209 (349)
T ss_pred HcC------CCCEEEEEeCccHHHHHHHHHHhc--------CCCEEEE
Confidence 976 489999999999999999776642 1467774
No 85
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=9.5e-35 Score=298.10 Aligned_cols=183 Identities=25% Similarity=0.282 Sum_probs=152.1
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-HhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+.... +.+..++|+ +|+||||+++|++|+.+|++|
T Consensus 17 ~~~~TPL~~~~~Ls~~~-g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV~-aSaGNha~avA~aa~~lGi~~ 94 (504)
T PRK09224 17 VAQETPLEKAPKLSARL-GNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVIT-ASAGNHAQGVALSAARLGIKA 94 (504)
T ss_pred cCCCCCceehhHhHHHh-CCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEEE-ECcCHHHHHHHHHHHHcCCCE
Confidence 56899999999999887 689999999999999999998765544332 334445555 699999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E 169 (410)
+||||+.+| ..|++.++.|||+|+.++ ++++++++.+.+++++. +. .+.+||+++ .++|++|++.|
T Consensus 95 ~IvmP~~tp---~~K~~~~r~~GA~Vi~~g-~~~~~a~~~a~~l~~~~--g~-------~~v~~f~~~~~i~G~gTi~~E 161 (504)
T PRK09224 95 VIVMPVTTP---DIKVDAVRAFGGEVVLHG-DSFDEAYAHAIELAEEE--GL-------TFIHPFDDPDVIAGQGTIAME 161 (504)
T ss_pred EEEECCCCC---HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--CC-------EEeCCCCCcHHHHhHHHHHHH
Confidence 999999988 489999999999999997 68999999998887764 22 346888877 58999999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
|++|++ + .||+||+|+||||+++|+.+.+... .+.++|+.
T Consensus 162 I~~q~~--~-~~D~vvvpvGgGGliaGia~~lk~~------~p~~kVig 201 (504)
T PRK09224 162 ILQQHP--H-PLDAVFVPVGGGGLIAGVAAYIKQL------RPEIKVIG 201 (504)
T ss_pred HHHhcc--C-CCCEEEEecChhHHHHHHHHHHHHh------CCCCEEEE
Confidence 999964 2 4899999999999999997665432 24677774
No 86
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=8.9e-35 Score=284.77 Aligned_cols=184 Identities=27% Similarity=0.334 Sum_probs=156.1
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCC-ceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKK-RIICETGAGMHGVSTATSCCLLNLESIIY 276 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~-~~v~~~ssGN~g~a~A~~a~~~G~~~~vv 276 (410)
.|||+++++|++.. +++||+|+|++||+||||+|++.+++..+.+.|.. ..|+++|+||||+++|++|+.+|++|+||
T Consensus 23 ~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~vv 101 (338)
T PRK06608 23 LTPIVHSESLNEML-GHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIY 101 (338)
T ss_pred CCCccchHhHHHHh-CCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence 79999999998877 68999999999999999999999999999888762 34556999999999999999999999999
Q ss_pred EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239 277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ 355 (410)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~ 355 (410)
||+..++ .|+++++.+||+|+.++ . .+++.+++.+ .++. +.+|+ +||++. ..+|++|++.||++
T Consensus 102 ~p~~~~~---~k~~~l~~~GA~V~~~~-~-~~~~~~~a~~-~~~~--~~~~~-------~~~~~~~~~~g~~t~a~Ei~~ 166 (338)
T PRK06608 102 LPLNTSK---VKQQAALYYGGEVILTN-T-RQEAEEKAKE-DEEQ--GFYYI-------HPSDSDSTIAGAGTLCYEALQ 166 (338)
T ss_pred ECCCCCH---HHHHHHHhCCCEEEEEC-C-HHHHHHHHHH-HHhC--CCEEc-------CCCCCHHHhccHHHHHHHHHH
Confidence 9986544 78999999999999985 3 4666666666 4332 44444 566332 56899999999999
Q ss_pred hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCC
Q psy11239 356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGIS 400 (410)
Q Consensus 356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~ 400 (410)
|++ ..||+||+|+|+|||++|++.+++.. ++|||||||++++
T Consensus 167 q~~---~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~ 210 (338)
T PRK06608 167 QLG---FSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNAN 210 (338)
T ss_pred hcC---CCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCCh
Confidence 995 46999999999999999999999864 8999999999886
No 87
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=1.6e-35 Score=298.45 Aligned_cols=177 Identities=20% Similarity=0.249 Sum_probs=145.2
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHH-HHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLA-KFLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~-~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
...+|||+++++|++.+ +.+||+|+|++|||||||||++...+... ++... ..|+++|+||||+++|++|+.+|+||
T Consensus 22 ~i~~TPl~~~~~ls~~~-g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~-~~Vv~aSsGN~g~alA~~a~~~G~~~ 99 (420)
T PRK08639 22 VVPETPLQRNDYLSEKY-GANVYLKREDLQPVRSYKLRGAYNAISQLSDEELA-AGVVCASAGNHAQGVAYACRHLGIPG 99 (420)
T ss_pred cCcCCCccchHHHHHHh-CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhC-CEEEEECccHHHHHHHHHHHHcCCCE
Confidence 56899999999999877 68999999999999999999887655432 22233 34566799999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEe--CCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQ--YGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIG 167 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~ 167 (410)
+||||+.++ +.|+..++.|||+|+.+. .++++++++.+.+++++. + ..+.|||+++ .++||+|+|
T Consensus 100 ~IvmP~~~~---~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~--g-------~~~~~~~~~~~~~~G~~tig 167 (420)
T PRK08639 100 VIFMPVTTP---QQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET--G-------ATFIPPFDDPDVIAGQGTVA 167 (420)
T ss_pred EEEECCCCh---HHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc--C-------CcccCCCCChhHhcchhHHH
Confidence 999999988 489999999999854332 246999999999988764 2 2347899877 589999999
Q ss_pred HHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 168 YEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 168 ~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
+||++|++..+ .||+||+|+|+||+++|+...+..
T Consensus 168 ~EI~eq~~~~~-~~D~vv~~vG~GG~~aGva~~~k~ 202 (420)
T PRK08639 168 VEILEQLEKEG-SPDYVFVPVGGGGLISGVTTYLKE 202 (420)
T ss_pred HHHHHhccccC-CCCEEEEecChhHHHHHHHHHHHH
Confidence 99999975211 389999999999999999776644
No 88
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=2.1e-35 Score=286.53 Aligned_cols=169 Identities=22% Similarity=0.284 Sum_probs=142.9
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
.+++|||++++++... +.+||+|+|++|||||||||.+...+..+++ +...|+++||||||+|+|++|+.+|++|+
T Consensus 20 ~i~~TPl~~~~~l~~~--~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~--~~~~vv~aSsGN~g~a~A~~a~~~G~~~~ 95 (310)
T PRK08246 20 HIRRTPVLEADGAGFG--PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV--PAAGVVAASGGNAGLAVAYAAAALGVPAT 95 (310)
T ss_pred cCCCCCeeeccccccC--CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc--cCCeEEEeCCCHHHHHHHHHHHHcCCCEE
Confidence 6689999999988754 5899999999999999999987766554443 34455667999999999999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239 92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI 170 (410)
||||+.++ +.|+.+|+.|||+|+.++ ++++++++.+.+.+++. + + .+.+||+|+ .+.||+|+++||
T Consensus 96 iv~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--g-~------~~~~~~~n~~~i~g~~t~~~Ei 162 (310)
T PRK08246 96 VFVPETAP---PAKVARLRALGAEVVVVG-AEYADALEAAQAFAAET--G-A------LLCHAYDQPEVLAGAGTLGLEI 162 (310)
T ss_pred EEECCCCc---HHHHHHHHHCCCEEEEeC-CCHHHHHHHHHHHHHhc--C-C------EeCCCCCChhhhcchHHHHHHH
Confidence 99999887 489999999999999998 67888888888877654 2 2 346778766 478999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccc
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPI 201 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl 201 (410)
++|++ .||+||+|+|+||+++|+...|
T Consensus 163 ~eq~~----~~D~iv~~vG~GG~~~Gi~~~~ 189 (310)
T PRK08246 163 EEQAP----GVDTVLVAVGGGGLIAGIAAWF 189 (310)
T ss_pred HHhcC----CCCEEEEecCccHHHHHHHHHh
Confidence 99963 4999999999999999997776
No 89
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=2.6e-35 Score=286.50 Aligned_cols=191 Identities=21% Similarity=0.187 Sum_probs=152.0
Q ss_pred CCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC--CceEEEeCccHHHHHHHHHHHHcCCcEEE
Q psy11239 15 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK--KRIICETGAGMHGVSTATSCCLLNLESII 92 (410)
Q Consensus 15 ~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~--~~~v~~~ssGN~g~a~A~~a~~~G~~~~i 92 (410)
+|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+. ...|+++|+||||+|+|++|+.+|++|+|
T Consensus 1 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i 79 (316)
T cd06448 1 KTPLIESTALSKTA-GCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTI 79 (316)
T ss_pred CCCccccchhhHhh-CCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 69999999999887 6899999999999999999988777666766663 44566679999999999999999999999
Q ss_pred EeccCCccccchhHHHHHhcCCEEEEEeCCC-HHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239 93 YIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 170 (410)
Q Consensus 93 v~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI 170 (410)
|||+.++ +.|+++|+.|||+|+.++ ++ ++++.+.+.++.++. ++.+| .+||+|| .+.||+|+++||
T Consensus 80 v~p~~~~---~~k~~~l~~~GA~v~~~~-~~~~~~~~~~~~~l~~~~-~~~~~-------~~~~~n~~~~~g~~t~~~Ei 147 (316)
T cd06448 80 VVPESTK---PRVVEKLRDEGATVVVHG-KVWWEADNYLREELAEND-PGPVY-------VHPFDDPLIWEGHSSMVDEI 147 (316)
T ss_pred EECCCCC---HHHHHHHHHcCCEEEEEC-CchHHHHHHHHHHHHhcc-CCcEE-------eCCCCCchhhccccHHHHHH
Confidence 9999887 589999999999999997 45 666666666655442 12233 4666665 478999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCCch
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGA 228 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS 228 (410)
++|++.. ..||+||+|+|+||+++|+...|.+.. .+.++|+. .+|.|+
T Consensus 148 ~~q~~~~-~~~D~vv~~vG~Gg~~~Gv~~~~k~~~-----~~~~~ii~----Vep~g~ 195 (316)
T cd06448 148 AQQLQSQ-EKVDAIVCSVGGGGLLNGIVQGLERNG-----WGDIPVVA----VETEGA 195 (316)
T ss_pred HHHcccc-CCCCEEEEEeCchHHHHHHHHHHHhcC-----CCCCEEEE----EeeCCC
Confidence 9997522 259999999999999999988876531 13567774 455554
No 90
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.7e-34 Score=288.55 Aligned_cols=198 Identities=19% Similarity=0.167 Sum_probs=161.2
Q ss_pred ccccccccccccccccCceeEEeecCC-CCCchhhHHHHHHHHHHHH--HcCCC--------------------ceEEec
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLAK--FLKKK--------------------RIICET 253 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~-~ptgS~K~R~a~~~~~~a~--~~g~~--------------------~~v~~~ 253 (410)
..|||+++++|++.++..+||+|+|++ ||+||||+|++.+.+..+. +.+.+ ..|+++
T Consensus 43 ~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~a 122 (399)
T PRK08206 43 APTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATA 122 (399)
T ss_pred CCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEe
Confidence 599999999999888436999999997 5999999999887776543 33321 246779
Q ss_pred CchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCC
Q psy11239 254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTAS 333 (410)
Q Consensus 254 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 333 (410)
|+||||+++|++|+.+|++|+||||+..++ .++..|+.+||+|+.++ +++++++..+.+.+++. +. |++.+..
T Consensus 123 SsGN~g~alA~~a~~~G~~~~Ivvp~~~~~---~k~~~i~~~GA~Vi~v~-~~~~~~~~~a~~~~~~~--g~-~~v~~~~ 195 (399)
T PRK08206 123 TDGNHGRGVAWAAQQLGQKAVIYMPKGSSE---ERVDAIRALGAECIITD-GNYDDSVRLAAQEAQEN--GW-VVVQDTA 195 (399)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHHc--CC-EEecCcc
Confidence 999999999999999999999999986543 78889999999999996 56999999998887765 33 4443322
Q ss_pred CCCCCh---hHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC----CCeEEEEccCCCCcC
Q psy11239 334 GPHPYP---TIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS----NFKLVAIESGGISKK 402 (410)
Q Consensus 334 ~~~~~~---~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~----~~~vigVe~~g~~~~ 402 (410)
+ +||+ .++.+||+|++.||++|+...+..||+||+|+|+||+++|++.++++. .+|||+|||++++.+
T Consensus 196 ~-~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l 270 (399)
T PRK08206 196 W-EGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCL 270 (399)
T ss_pred c-cCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchH
Confidence 2 3553 237899999999999999732346999999999999999999999753 689999999998754
No 91
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=2.9e-35 Score=288.44 Aligned_cols=203 Identities=20% Similarity=0.157 Sum_probs=153.5
Q ss_pred ChhhhhhhcCCCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHH
Q psy11239 1 MEWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGV 77 (410)
Q Consensus 1 ~~~~~~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~ 77 (410)
|++++.|.. ...+|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+. +.+|+++|+||||+
T Consensus 1 ~~~~~~~~~--~~g~TPL~~~~~l~~~~-g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~ 77 (330)
T PRK10717 1 MKIFEDVSD--TIGNTPLIRLNRASEAT-GCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGI 77 (330)
T ss_pred CchhhhHHH--HhCCCceEEccccCCCC-CCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHH
Confidence 455666655 45799999999999887 5799999999999999999998877777766654 24577789999999
Q ss_pred HHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHH---HHHHHHHHHhh---cccCCccccccccc
Q psy11239 78 STATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKE---AMNEAIKDWSN---NILNSHYLIGTASG 151 (410)
Q Consensus 78 a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~ 151 (410)
|+|++|+.+|++|+||||+.++ +.|+++|+.|||+|+.++...+++ ..+.+.+.+++ ...+.+ .+
T Consensus 78 alA~~a~~~G~~~~vv~p~~~~---~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~------~~ 148 (330)
T PRK10717 78 GLALVAAARGYKTVIVMPETQS---QEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGA------IW 148 (330)
T ss_pred HHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCe------Ee
Confidence 9999999999999999999887 589999999999999998321221 22332322222 111122 24
Q ss_pred Cccccccc--cccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCCch
Q psy11239 152 PHPYPTIV--RDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGA 228 (410)
Q Consensus 152 ~~p~~~~~--~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS 228 (410)
.+||+||. ..||+|++.||++|++ ..||+||+|+|+||+++|+...|.+. .+.++|+. .+|.++
T Consensus 149 ~~~~~~~~~~~~g~~t~a~Ei~~ql~---~~~d~iv~~vG~GG~~~Gi~~~~k~~------~~~~~vi~----Vep~~~ 214 (330)
T PRK10717 149 ANQFDNPANREAHYETTGPEIWEQTD---GKVDGFVCAVGTGGTLAGVSRYLKET------NPKVKIVL----ADPTGS 214 (330)
T ss_pred cCCCCChhhHHHHHHhHHHHHHHhcC---CCCCEEEEecCchHHHHHHHHHHHHh------CCCCEEEE----EcCCCC
Confidence 67777763 4789999999999964 24899999999999999997766542 23567763 445444
No 92
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=9.2e-35 Score=282.05 Aligned_cols=188 Identities=24% Similarity=0.330 Sum_probs=159.8
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
+|||+++++|...+ +.+||+|+|++||+||||||.+.+++..+++.+....|+++|+||||+|+|++|+++|++|++||
T Consensus 17 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~ivv 95 (304)
T cd01562 17 RTPLLTSPTLSELL-GAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVM 95 (304)
T ss_pred CCCcccchhhHHHh-CCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 89999999998777 57999999999999999999999999888776633335569999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|+..+ +.++++|+.+||+|+.++ ++++++.+.+.+++++. +.+|+ .++. +++ ...|+++++.||++|+
T Consensus 96 p~~~~---~~k~~~l~~~Ga~vi~~~-~~~~~~~~~a~~la~~~--~~~~~-~~~~--n~~---~~~g~~~~~~Ei~~q~ 163 (304)
T cd01562 96 PETAP---AAKVDATRAYGAEVVLYG-EDFDEAEAKARELAEEE--GLTFI-HPFD--DPD---VIAGQGTIGLEILEQV 163 (304)
T ss_pred CCCCC---HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEEe-CCCC--Ccc---hhccHHHHHHHHHHhc
Confidence 97654 378999999999999996 45888988888887765 45554 4433 222 4578999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
. .||+||+|+|||||++|++.+|+.. ++|||+|||.+++.+
T Consensus 164 ~----~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~ 206 (304)
T cd01562 164 P----DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAM 206 (304)
T ss_pred C----CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchH
Confidence 5 3999999999999999999999864 899999999988754
No 93
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=2.2e-34 Score=288.33 Aligned_cols=201 Identities=29% Similarity=0.472 Sum_probs=165.9
Q ss_pred ecccccccccccccccc-CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 196 GRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 196 G~~tpl~~~~~L~~~~~-~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
+.+|||+++++|.+.++ +.+||+|+|++||+||||+|++..++..+++.|.+++++++|+||||+|+|++|+.+|++|+
T Consensus 75 ~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~~~~vtetgsGN~G~alA~aaa~~Gl~~~ 154 (427)
T PRK12391 75 WRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIKRLTTETGAGQWGSALALACALFGLECT 154 (427)
T ss_pred cCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCCCEEEEccCchHHHHHHHHHHHHcCCcEE
Confidence 46899999999988764 26999999999999999999999999999999998888888999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-----------------HHHHHHHHHHHHHccCCCceEEecCCCCCCC
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-----------------LKEAMNEAIKDWSNNILNSHYLIGTASGPHP 337 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 337 (410)
||||..+...++.++.+|+.+||+|+.++... +..++.++.+.+.++ ++..|++++..
T Consensus 155 V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~-~~~~y~~~s~~---- 229 (427)
T PRK12391 155 VFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKR-PDTKYALGSVL---- 229 (427)
T ss_pred EEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhC-CCcEEEcCCCC----
Confidence 99997544434577899999999999986321 222577777777664 24567754322
Q ss_pred ChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc------CCCeEEEEccCCCCcCC
Q psy11239 338 YPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN------SNFKLVAIESGGISKKR 403 (410)
Q Consensus 338 ~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~------~~~~vigVe~~g~~~~~ 403 (410)
..+..|+.++|.||++|+...|..||+||+|+|+||+++|++.+|.+ .++|||+|||++++.+.
T Consensus 230 --~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~ 299 (427)
T PRK12391 230 --NHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLT 299 (427)
T ss_pred --cHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhc
Confidence 12578999999999999975566899999999999999999987731 47999999999997553
No 94
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=3.4e-35 Score=294.20 Aligned_cols=197 Identities=29% Similarity=0.442 Sum_probs=159.7
Q ss_pred CCCCCcCccccccccccC-CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~-~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
.+++|||+++++|.+.+| +.+||+|+|++||+||||+|.++.+++.+++.+...+++++|+||||+|+|++|+.+|++|
T Consensus 74 ~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~~~~vtetgsGN~G~alA~aaa~~Gl~~ 153 (427)
T PRK12391 74 LWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIKRLTTETGAGQWGSALALACALFGLEC 153 (427)
T ss_pred ccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCCCEEEEccCchHHHHHHHHHHHHcCCcE
Confidence 678999999999998875 3699999999999999999999999888899888888888789999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHH------------------HHHHHHHHHHhhcccCCcccccccccC
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLK------------------EAMNEAIKDWSNNILNSHYLIGTASGP 152 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (410)
+||||+.+..+++.|+.+|+.|||+|+.++ +++. .++.++.+.+.+. .+.+|+.++.
T Consensus 154 ~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~-~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~-~~~~y~~~s~--- 228 (427)
T PRK12391 154 TVFMVRVSYEQKPYRRSLMETYGAEVIPSP-SDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKR-PDTKYALGSV--- 228 (427)
T ss_pred EEEEecCCcccCHHHHHHHHHCCCEEEEEC-CchhhhhhhhhhcCccccccHHHHHHHHHHHHHhC-CCcEEEcCCC---
Confidence 999998665556789999999999999997 3322 2567777777654 2445654432
Q ss_pred ccccccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 153 HPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 153 ~p~~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
+++...||.++|+||++|++..+..||+||+|+|+||+++|+..|+.+..... .+.++|+.
T Consensus 229 ---~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g--~~~~riia 289 (427)
T PRK12391 229 ---LNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEG--KKDTRFIA 289 (427)
T ss_pred ---CcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcC--CCCceEEE
Confidence 12356899999999999987555579999999999999999998887543221 12567774
No 95
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.5e-34 Score=285.78 Aligned_cols=187 Identities=21% Similarity=0.278 Sum_probs=158.5
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||+++++|+... +.+||+|+|++||+||||+|++.+++..+.+.+.+++| ++|+||||+++|++|+.+|++|+|||
T Consensus 31 ~TPl~~~~~l~~~~-g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~~iv-~aSsGN~g~alA~~a~~~G~~~~ivv 108 (353)
T PRK07409 31 NTPLIPAPNLSELL-GVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAKAVI-CASTGNTSASAAAYAARAGLKAFVLI 108 (353)
T ss_pred CCCEEEchhhHHHh-CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCCEEE-EECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 79999999988776 57999999999999999999999999999988877655 59999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|+...+ ..|++.|+.+||+|+.++ ++++++.+.+.+..++. + +|.+++ . ||+ ...|+.|++.||++|+
T Consensus 109 P~~~~~--~~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~l~~~~--~-~~~~~~-~--n~~---~~~g~~t~~~EI~~q~ 176 (353)
T PRK07409 109 PEGKIA--LGKLAQAVMYGAEIIQID-GNFDDALEIVRELAEKY--P-VTLVNS-V--NPY---RIEGQKTAAFEIVDAL 176 (353)
T ss_pred cCCCCc--hhhHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc--C-ceecCC-C--Cch---hhhhHHHHHHHHHHHh
Confidence 986333 368889999999999996 55888888888876654 3 444322 1 333 4678999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCc
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISK 401 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~ 401 (410)
. ..||+||+|+||||+++|++.+|++. .+|||+|||.+++.
T Consensus 177 ~---~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~ 225 (353)
T PRK07409 177 G---DAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAP 225 (353)
T ss_pred C---CCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCCh
Confidence 4 47999999999999999999999753 48999999998854
No 96
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=1.7e-34 Score=288.87 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=159.1
Q ss_pred cccccccccccccccc-------CceeEEeecCCCC-CchhhHHHHHHHHHH-----HHHcCC-----------------
Q psy11239 197 RPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK----------------- 246 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~-------~~~v~~K~e~~~p-tgS~K~R~a~~~~~~-----a~~~g~----------------- 246 (410)
..|||++++++++.++ +.+||+|+|+.|| +||||+|++.+++.. +++.|.
T Consensus 69 ~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~ 148 (431)
T TIGR02035 69 IESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKD 148 (431)
T ss_pred cCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhh
Confidence 5899999999887442 4699999999999 999999999998863 445554
Q ss_pred ---CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCC
Q psy11239 247 ---KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNIL 323 (410)
Q Consensus 247 ---~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~ 323 (410)
+..|+++|+||||+++|++|+.+|++|+||||++.+. .|+++++.+||+|+.++ ++++++.+.++++.++.
T Consensus 149 ~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~---~K~~~ir~~GAeVv~~~-~~~~~a~~~A~~la~~~-- 222 (431)
T TIGR02035 149 FFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQ---WKKDKLRSKGVTVVEYE-SDYGVAVEEGRKNADAD-- 222 (431)
T ss_pred cccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--
Confidence 1345669999999999999999999999999986554 89999999999999995 55999999999988775
Q ss_pred CceEEecCCCCCCCCh-hHHHhhhhhHHHHHHHhhhhcC-----CCCCEEEEccCchhHHHHHHHHHhcC---CCeEEEE
Q psy11239 324 NSHYLIGTASGPHPYP-TIVRDFQSIIGYEIHQQLNFNF-----YNKKYILACVGGGSNALGIFYTFINS---NFKLVAI 394 (410)
Q Consensus 324 ~~~~~~~~~~~~~~~~-~~~~~g~~t~g~Ei~~q~~~~~-----~~~d~iv~~vGtGg~~~Gi~~~~~~~---~~~vigV 394 (410)
+..|++ ++++ .++.+||+|+|.||++|+...+ ..||+|++|+|+||+++|++.++++. ++|||+|
T Consensus 223 ~~~~~~------d~~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~V 296 (431)
T TIGR02035 223 PMCYFV------DDENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFA 296 (431)
T ss_pred CCeEEC------CCCCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 234443 2222 2357999999999999996321 25789999999999999999999863 8999999
Q ss_pred ccCCCCc
Q psy11239 395 ESGGISK 401 (410)
Q Consensus 395 e~~g~~~ 401 (410)
||++++.
T Consensus 297 Ep~~s~~ 303 (431)
T TIGR02035 297 EPTHSPC 303 (431)
T ss_pred eeCCCHH
Confidence 9999863
No 97
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=1.9e-34 Score=289.63 Aligned_cols=194 Identities=16% Similarity=0.158 Sum_probs=158.4
Q ss_pred ecccccccccccccccc-------CceeEEeecCCCC-CchhhHHHHHHHHHH-----HHHcCC----------------
Q psy11239 196 GRPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK---------------- 246 (410)
Q Consensus 196 G~~tpl~~~~~L~~~~~-------~~~v~~K~e~~~p-tgS~K~R~a~~~~~~-----a~~~g~---------------- 246 (410)
-..|||++++.+++..+ +.+||+|+|++|| |||||+|++++++.. +++.|.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 35899999998876653 1699999999999 999999999998764 334442
Q ss_pred ----CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccC
Q psy11239 247 ----KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNI 322 (410)
Q Consensus 247 ----~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~ 322 (410)
...|+++|+||||+++|++|+.+|++|+||||++.++ .|++.|+.+||+|+.++ ++++++.+.+.+..+++
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~---~K~~~ir~~GAeVi~~~-~~~~~a~~~A~~la~~~- 227 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQ---WKKDKLRSHGVTVVEYE-GDYGVAVEEGRKAAESD- 227 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc-
Confidence 1245669999999999999999999999999986554 88999999999999985 55999999999887765
Q ss_pred CCceEEecCCCCCCCChh-HHHhhhhhHHHHHHHhhhhcC-----CCCCEEEEccCchhHHHHHHHHHhc---CCCeEEE
Q psy11239 323 LNSHYLIGTASGPHPYPT-IVRDFQSIIGYEIHQQLNFNF-----YNKKYILACVGGGSNALGIFYTFIN---SNFKLVA 393 (410)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~-~~~~g~~t~g~Ei~~q~~~~~-----~~~d~iv~~vGtGg~~~Gi~~~~~~---~~~~vig 393 (410)
+..|++ ++|++ .+.+||+|+|.||++|++..+ ..||+||+|+|+||+++|++.+|++ +++|||+
T Consensus 228 -~~~~~~------~~~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVig 300 (441)
T PRK02991 228 -PNCYFI------DDENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFF 300 (441)
T ss_pred -CCeEeC------CCCCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEE
Confidence 234443 44422 268999999999999997322 2478999999999999999999986 3799999
Q ss_pred EccCCCCc
Q psy11239 394 IESGGISK 401 (410)
Q Consensus 394 Ve~~g~~~ 401 (410)
|||++++.
T Consensus 301 VEp~ga~~ 308 (441)
T PRK02991 301 AEPTHSPC 308 (441)
T ss_pred EecCCChH
Confidence 99999863
No 98
>PLN02569 threonine synthase
Probab=100.00 E-value=7.7e-34 Score=288.30 Aligned_cols=180 Identities=14% Similarity=0.179 Sum_probs=148.7
Q ss_pred CCCcCccccccccc-cCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC----CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239 14 RPTPIYYCKNISNI-LKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNL 88 (410)
Q Consensus 14 ~~TPl~~~~~l~~~-~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~----~~~v~~~ssGN~g~a~A~~a~~~G~ 88 (410)
++|||+++++|.+. +|..+||+|+|++|||||||||++...+..+++.+. ...|+++||||||+|+|++|+.+|+
T Consensus 132 G~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl 211 (484)
T PLN02569 132 GNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGI 211 (484)
T ss_pred CCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCC
Confidence 68999999999887 755699999999999999999988766666666543 2345657999999999999999999
Q ss_pred cEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHH
Q psy11239 89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGY 168 (410)
Q Consensus 89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~ 168 (410)
+|+||||++... +.|+.+|+.|||+|+.++ ++++++++.+.++.++. .+|+.++. ||| .++||+|+++
T Consensus 212 ~~~I~vP~~~~~--~~k~~qi~a~GA~Vi~v~-g~~d~a~~~a~e~~~~~---~~~~~n~~---Np~---~ieG~kT~a~ 279 (484)
T PLN02569 212 PSIVFLPADKIS--IAQLVQPIANGALVLSID-TDFDGCMRLIREVTAEL---PIYLANSL---NSL---RLEGQKTAAI 279 (484)
T ss_pred eEEEEEcCCCCC--HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHHc---CCEecCCC---Ccc---hhHhHHHHHH
Confidence 999999997332 489999999999999998 79999999998877654 24433321 444 4699999999
Q ss_pred HHHHhhhhcCCCccEEEEecCCCCceeeccccccccccc
Q psy11239 169 EIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNI 207 (410)
Q Consensus 169 EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L 207 (410)
||++|+. +..||+||+|+|+||++.|++..|.++..+
T Consensus 280 EI~eQl~--~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~ 316 (484)
T PLN02569 280 EILQQFD--WEVPDWVIVPGGNLGNIYAFYKGFKMCKEL 316 (484)
T ss_pred HHHHHcC--CCCCCEEEEeCCchHHHHHHHHHHHHHHHc
Confidence 9999964 335999999999999999999988776544
No 99
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=5e-35 Score=283.01 Aligned_cols=186 Identities=17% Similarity=0.108 Sum_probs=152.3
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL 88 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~ 88 (410)
...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+..+.+.+. +.+|+++|+||||+|+|++|+.+|+
T Consensus 4 ~vg~TPL~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~ 82 (299)
T TIGR01136 4 LIGNTPLVRLNRLAPGC-DARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGY 82 (299)
T ss_pred ccCCCceEEccccCCCC-CceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCC
Confidence 35799999999999877 5799999999999999999998877666666654 3456778999999999999999999
Q ss_pred cEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccchh
Q psy11239 89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQSI 165 (410)
Q Consensus 89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~t 165 (410)
+|+||||+.++ +.|+++|+.|||+|+.++.. +++++++.+.+++++. +.++ ..+||+|+. ..||++
T Consensus 83 ~~~i~vp~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~--~~~~------~~~~~~~~~~~~~g~~t 151 (299)
T TIGR01136 83 KLILTMPETMS---LERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAET--NKYV------MLDQFENPANPEAHYKT 151 (299)
T ss_pred cEEEEECCCCC---HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhC--CCeE------ecCCCCCchhHHHHHHH
Confidence 99999999887 48999999999999999832 2688888888877653 2222 356676552 578999
Q ss_pred HHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 166 IGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 166 i~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
+++||++|++ + .||+||+|+|+||+++|+...|.+.. +.++|+.
T Consensus 152 ~~~Ei~~ql~--~-~~d~iv~~vG~Gg~~~G~~~~~~~~~------~~~~vi~ 195 (299)
T TIGR01136 152 TGPEIWRDTD--G-RIDHFVAGVGTGGTITGVGRYLKEQN------PNIKIVA 195 (299)
T ss_pred HHHHHHHhcC--C-CCCEEEEcCchhHHHHHHHHHHHHhC------CCCEEEE
Confidence 9999999964 2 49999999999999999987775432 3567774
No 100
>KOG1250|consensus
Probab=100.00 E-value=2.8e-35 Score=279.31 Aligned_cols=175 Identities=27% Similarity=0.294 Sum_probs=151.4
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHH-HHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQ-SLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~-~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
.+..|||.+.-.|++.+ +.++|+|+|++||+||||.|++-.. ..++++.+..++++ +|+||||+|+|++|+++|+||
T Consensus 63 ~~~~TPl~~s~~lS~~~-g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gVia-sSaGNha~a~Ayaa~~Lgipa 140 (457)
T KOG1250|consen 63 VIVETPLLKSVALSKKA-GMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVIA-SSAGNHAQAAAYAARKLGIPA 140 (457)
T ss_pred ceecccchhhhhhhhhc-CCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceEE-ecCccHHHHHHHHHHhcCCce
Confidence 56689999998899887 8999999999999999999987533 33555555666666 599999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E 169 (410)
+||||..+|. .|++.++.+||+|+... .+++++...+.+.++++ +..+.+|||+| +++|++|++.|
T Consensus 141 TIVmP~~tp~---~kiq~~~nlGA~Vil~G-~~~deAk~~a~~lAke~---------gl~yI~pfDhP~I~aGqgTig~E 207 (457)
T KOG1250|consen 141 TIVMPVATPL---MKIQRCRNLGATVILSG-EDWDEAKAFAKRLAKEN---------GLTYIPPFDHPDIWAGQGTIGLE 207 (457)
T ss_pred EEEecCCChH---HHHHHHhccCCEEEEec-ccHHHHHHHHHHHHHhc---------CceecCCCCCchhhcCcchHHHH
Confidence 9999999995 79999999999999885 57999999999999876 23568999999 68999999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeecccccccc
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYC 204 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~ 204 (410)
|.+|+.. .++.|+||||+||+++|+.|.+.++
T Consensus 208 Il~ql~~---~~~AI~vpVGGGGLiaGIat~vk~~ 239 (457)
T KOG1250|consen 208 ILEQLKE---PDGAIVVPVGGGGLIAGIATGVKRV 239 (457)
T ss_pred HHHhhcC---CCCeEEEecCCchhHHHHHHHHHHh
Confidence 9999752 3559999999999999999888654
No 101
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=4e-35 Score=294.44 Aligned_cols=182 Identities=22% Similarity=0.254 Sum_probs=149.6
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-HhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
...+|||+++++|++.+ +.+||+|+|++|||||||||.+...+.... +.+..++ +++|+||||+|+|++|+.+|++|
T Consensus 20 ~i~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~v-v~aSsGN~g~alA~~a~~~G~~~ 97 (403)
T PRK07334 20 QVLRTPCVHSRTLSQIT-GAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGV-IAMSAGNHAQGVAYHAQRLGIPA 97 (403)
T ss_pred CCCCCCccchHHHHHhh-CCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHhCCcE-EEECCcHHHHHHHHHHHHcCCCE
Confidence 45899999999999887 579999999999999999998776655432 2233344 55699999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E 169 (410)
+||||+.++ +.|+++|+.|||+|+.++ ++++++++.+.+++++. +. .+.+||+++ .+.||+|+++|
T Consensus 98 ~iv~p~~~~---~~k~~~~~~~GA~v~~~~-~~~~~~~~~a~~l~~~~--~~-------~~~~~~~~~~~~~g~~t~~~E 164 (403)
T PRK07334 98 TIVMPRFTP---TVKVERTRGFGAEVVLHG-ETLDEARAHARELAEEE--GL-------TFVHPYDDPAVIAGQGTVALE 164 (403)
T ss_pred EEEECCCCC---HHHHHHHHHcCCEEEEEC-cCHHHHHHHHHHHHHhc--CC-------EecCCCCCHHHHHhHHHHHHH
Confidence 999999988 589999999999999987 67899999888887653 22 235777766 47999999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
|++|++ .||+||+|+|+||+++|+...|... .+.++|+.
T Consensus 165 i~~q~~----~~d~vv~~vG~GG~~~Gi~~~lk~~------~~~~~vi~ 203 (403)
T PRK07334 165 MLEDAP----DLDTLVVPIGGGGLISGMATAAKAL------KPDIEIIG 203 (403)
T ss_pred HHhcCC----CCCEEEEecCHHHHHHHHHHHHHHh------CCCCEEEE
Confidence 999963 4899999999999999997776442 23567774
No 102
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=1.4e-33 Score=282.63 Aligned_cols=178 Identities=22% Similarity=0.283 Sum_probs=149.1
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
..++|||+++++|++.+|..+||+|+|++|||||||||.+...+..+++.+...+|+ +|+||||+|+|++|+.+|++|+
T Consensus 64 ~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~ 142 (397)
T PRK06260 64 NEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVKTVAC-ASTGNTSASLAAYAARAGLKCY 142 (397)
T ss_pred CCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEE
Confidence 346899999999998875449999999999999999999887777777777655555 6999999999999999999999
Q ss_pred EEeccC-CccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHH
Q psy11239 92 IYIGEN-DYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~-~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI 170 (410)
||||+. ++ +.|+.+|+.|||+|+.++ ++++++++.+.+.+++. .+|+.++ .||| .++||+|+++||
T Consensus 143 i~vP~~~~~---~~k~~~~~~~GA~vi~v~-~~~~~~~~~a~~~~~~~---g~y~~~~---~np~---~~~G~~t~a~Ei 209 (397)
T PRK06260 143 VLLPAGKVA---LGKLAQALLHGAKVLEVD-GNFDDALDMVVELAKEG---KIYLLNS---INPF---RLEGQKTIGFEI 209 (397)
T ss_pred EEEeCCCcc---HHHHHHHHhcCCEEEEEC-CcHHHHHHHHHHHHhhC---CEEeecC---CCch---hhcchhhHHHHH
Confidence 999987 55 589999999999999998 78999988888877653 2443332 1344 468999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccccc
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCK 205 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~ 205 (410)
++|+. +..||+||+|+|+||+++|+...|.++.
T Consensus 210 ~eQl~--~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~ 242 (397)
T PRK06260 210 ADQLG--WEVPDRVVLPVGNAGNISAIWKGFKELV 242 (397)
T ss_pred HHHhC--CCCCCEEEEeCCcHHHHHHHHHHHHHHH
Confidence 99964 3359999999999999999999887654
No 103
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1.7e-34 Score=282.51 Aligned_cols=188 Identities=24% Similarity=0.339 Sum_probs=159.4
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||+++++|+...++.+||+|+|+.||+||||+|++.+++..+.+.+.+++| ++|+||||+|+|++|+.+|++|++||
T Consensus 22 ~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~vv-~~SsGN~g~alA~~a~~~G~~~~ivv 100 (324)
T cd01563 22 NTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGVKAVA-CASTGNTSASLAAYAARAGIKCVVFL 100 (324)
T ss_pred CCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCCCEEE-EeCCCHHHHHHHHHHHHcCCceEEEE
Confidence 79999999998776458999999999999999999999999999988876655 59999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|+..+ +.++++|+.+||+|+.++ ++++++.+.+.+..++. .+|+ .++. |+. ...||.|++.||++|+
T Consensus 101 p~~~~---~~k~~~l~~~GA~Vi~~~-~~~~~~~~~a~~~~~~~---~~~~-~~~~--n~~---~~~g~~t~~~Ei~~q~ 167 (324)
T cd01563 101 PAGKA---LGKLAQALAYGATVLAVE-GNFDDALRLVRELAEEN---WIYL-SNSL--NPY---RLEGQKTIAFEIAEQL 167 (324)
T ss_pred eCCCC---HHHHHHHHHcCCEEEEEC-CcHHHHHHHHHHHHHhc---Ceec-cCCC--Ccc---eecchhhhHHHHHHHc
Confidence 98653 478999999999999996 45888888887776653 4444 3333 222 4579999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhc--------CCCeEEEEccCCCCc
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFIN--------SNFKLVAIESGGISK 401 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--------~~~~vigVe~~g~~~ 401 (410)
+ +..||+||+|+|||||++|++.++++ ++++||||||.+++.
T Consensus 168 ~--~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~ 217 (324)
T cd01563 168 G--WEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAP 217 (324)
T ss_pred C--CCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCH
Confidence 5 23699999999999999999999975 369999999999863
No 104
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-35 Score=283.95 Aligned_cols=182 Identities=24% Similarity=0.293 Sum_probs=147.6
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-HhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
.+++|||+++++|++.+ +.+||+|+|++|||||||||.+...+.... +.+..+ ++++|+||||+|+|++|+.+|+||
T Consensus 17 ~i~~TPLv~~~~l~~~~-g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~~~~-vv~aSsGN~g~alA~~a~~~G~~~ 94 (317)
T PRK06815 17 QVRVTPLEHSPLLSQHT-GCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQG-VITASSGNHGQGVALAAKLAGIPV 94 (317)
T ss_pred CCCCCCccccHhHHHhh-CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhcCce-EEEECCChHHHHHHHHHHHhCCCE
Confidence 45799999999999877 679999999999999999998765544322 222334 455699999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E 169 (410)
+||||+.++ +.|+.+|+.|||+|+.++ ++++++...+.+++++. +.+ +.+||+++ .+.|++|+++|
T Consensus 95 ~i~~p~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~~~-------~~~~~~~~~~~~g~~t~a~E 161 (317)
T PRK06815 95 TVYAPEQAS---AIKLDAIRALGAEVRLYG-GDALNAELAARRAAEQQ--GKV-------YISPYNDPQVIAGQGTIGME 161 (317)
T ss_pred EEEECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhc--CCE-------EecCCCChhhhcchhHHHHH
Confidence 999999887 589999999999999998 67888888877776653 222 35677665 47899999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
|++|+. .||+||+|+|+||+++|+...|.++ .+.++|+.
T Consensus 162 i~~q~~----~~d~vv~~vG~Gg~~~Gi~~~~k~~------~~~~~vig 200 (317)
T PRK06815 162 LVEQQP----DLDAVFVAVGGGGLISGIATYLKTL------SPKTEIIG 200 (317)
T ss_pred HHHhcC----CCCEEEEECcHHHHHHHHHHHHHHh------CCCCEEEE
Confidence 999964 3899999999999999997776543 23577774
No 105
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=5e-35 Score=293.52 Aligned_cols=175 Identities=21% Similarity=0.272 Sum_probs=144.5
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHH-HHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLA-KFLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~-~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
...+|||+++++|++.+ +.+||+|+|++|||||||+|++...+... ++....+ |+++|+||||+++|++|+.+|+||
T Consensus 13 ~i~~TPl~~~~~ls~~~-g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~g-vv~aSsGN~g~a~A~~a~~~G~~~ 90 (409)
T TIGR02079 13 VVPHTPLQLNERLSEKY-GANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKG-VVCASAGNHAQGFAYACRHLGVHG 90 (409)
T ss_pred cCCCCCccccHHHHHHh-CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCE-EEEECccHHHHHHHHHHHHcCCCE
Confidence 56799999999999887 67999999999999999999876554432 2333334 555699999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEE--eCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLV--QYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIG 167 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~ 167 (410)
+||||+.++ +.|...++.|||+|+.+ ..++++++++.+.+++++. +.+ +.+||++| .++||+|++
T Consensus 91 ~iv~p~~~~---~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~--g~~-------~~~~~~~~~~~~g~~ti~ 158 (409)
T TIGR02079 91 TVFMPATTP---KQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDH--GGT-------FIPPFDDPRIIEGQGTVA 158 (409)
T ss_pred EEEECCCCC---HHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhc--CCE-------EeCCCCCHhHhhhhHHHH
Confidence 999999988 58999999999985422 2257999999999988764 222 36788877 589999999
Q ss_pred HHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 168 YEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 168 ~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
.||++|++ + .||+||+|+|+||+++|+...|..
T Consensus 159 ~Ei~~q~~--~-~~D~vv~pvG~GG~~~Gia~~~k~ 191 (409)
T TIGR02079 159 AEILDQLP--E-KPDYVVVPVGGGGLISGLTTYLAG 191 (409)
T ss_pred HHHHHhcC--C-CCCEEEEEecHhHHHHHHHHHHHH
Confidence 99999964 2 499999999999999999887754
No 106
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=2.3e-34 Score=288.45 Aligned_cols=190 Identities=23% Similarity=0.311 Sum_probs=161.5
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||+++++|...++..+||+|+|++|||||||||++...+..+.+.|.+.+| ++|+||||+|+|++|+++|++|+|||
T Consensus 67 ~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~~~vv-~aSsGN~g~alA~~aa~~G~~~~i~v 145 (397)
T PRK06260 67 GTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVKTVA-CASTGNTSASLAAYAARAGLKCYVLL 145 (397)
T ss_pred CCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCCCEEE-EeCCcHHHHHHHHHHHHcCCcEEEEE
Confidence 69999999988777333999999999999999999999999999988887665 49999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|+...+ +.|+.+++.+||+|+.++ ++++++.+.+.+..++. .+|++++. ||+ ..+|++|+++||++|+
T Consensus 146 P~~~~~--~~k~~~~~~~GA~vi~v~-~~~~~~~~~a~~~~~~~---g~y~~~~~---np~---~~~G~~t~a~Ei~eQl 213 (397)
T PRK06260 146 PAGKVA--LGKLAQALLHGAKVLEVD-GNFDDALDMVVELAKEG---KIYLLNSI---NPF---RLEGQKTIGFEIADQL 213 (397)
T ss_pred eCCCcc--HHHHHHHHhcCCEEEEEC-CcHHHHHHHHHHHHhhC---CEEeecCC---Cch---hhcchhhHHHHHHHHh
Confidence 975333 378889999999999995 56889888888877664 35665432 444 4689999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK 402 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~ 402 (410)
. +..||+||+|+|+||+++|++.+|++. .+|||+|||++++.+
T Consensus 214 ~--~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~ 264 (397)
T PRK06260 214 G--WEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPI 264 (397)
T ss_pred C--CCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHH
Confidence 6 336999999999999999999999864 389999999998743
No 107
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=5.3e-34 Score=281.29 Aligned_cols=188 Identities=23% Similarity=0.301 Sum_probs=156.8
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||++++++.+.. +.+||+|+|++||+||||+|++.+++..++++|.+++|+ +|+||||+++|++|+++|++|+|||
T Consensus 28 ~TPl~~l~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~vV~-aSsGN~G~alA~~aa~~G~~~~vvv 105 (352)
T PRK06721 28 NTPLIPLLNISKQL-GIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGSEAIIC-ASTGNTSASAAAYAARLGMKCIIVI 105 (352)
T ss_pred CCCeeEchhhHHHh-CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCCEEEE-ECCcHHHHHHHHHHHHCCCcEEEEE
Confidence 89999999988776 579999999999999999999999999999988876654 9999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|+...+ +.|+++|+.+||+|+.++ ++++++.+.+.+..++. + .|+.+ .. ||+ ...||.|++.||++|+
T Consensus 106 p~~~~~--~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~--~-~~~~~-~~--n~~---~~~G~~t~~~Ei~eq~ 173 (352)
T PRK06721 106 PEGKIA--HGKLAQAVAYGAEIISIE-GNFDDALKAVRNIAAEE--P-ITLVN-SV--NPY---RIEGQKTAAFEICDQL 173 (352)
T ss_pred CCCCCC--HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhC--C-ceecc-CC--Cch---hhhhhhhHHHHHHHHh
Confidence 975433 378889999999999996 55888888888877665 3 33332 22 333 4678999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHH----hc---CCCeEEEEccCCCCcC
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTF----IN---SNFKLVAIESGGISKK 402 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~----~~---~~~~vigVe~~g~~~~ 402 (410)
. ..||+||+|+||||+++|++.++ ++ +.+|||||||++++.+
T Consensus 174 ~---~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~ 222 (352)
T PRK06721 174 Q---RAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAI 222 (352)
T ss_pred C---CCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChH
Confidence 5 46999999999999999865444 42 4799999999988643
No 108
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=9.6e-35 Score=280.97 Aligned_cols=186 Identities=19% Similarity=0.139 Sum_probs=149.7
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL 88 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~ 88 (410)
..++|||+++++ ...+ +.+||+|+|++|||||||||.+...+..+.+.+. +.+|+++|+||||+|+|++|+++|+
T Consensus 4 ~~g~TPl~~~~~-~~~~-g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl 81 (298)
T TIGR01139 4 LIGNTPLVRLNR-IEGC-NANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGY 81 (298)
T ss_pred ccCCCceEEccc-cCCC-CceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCC
Confidence 457999999998 4455 5899999999999999999998877666666654 3457778999999999999999999
Q ss_pred cEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239 89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS 164 (410)
Q Consensus 89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~ 164 (410)
+|+||||+.++ +.|+++|+.|||+|+.++ ++ ++++++.+.++.++.+ +.++ ..+||+|+. ..||+
T Consensus 82 ~~~i~vp~~~~---~~k~~~~~~~GA~v~~~~-~~~~~~~~~~~a~~~~~~~~-~~~~------~~~~~~n~~~~~~g~~ 150 (298)
T TIGR01139 82 KLILTMPETMS---IERRKLLKAYGAELVLTP-GAEGMKGAIAKAEEIAASTP-NSYF------MLQQFENPANPEIHRK 150 (298)
T ss_pred eEEEEeCCccC---HHHHHHHHHcCCEEEEEC-CCCCHHHHHHHHHHHHHhCC-CcEE------cccccCCcccHHHHHH
Confidence 99999999987 489999999999999998 54 4678888888776542 2232 355666553 57999
Q ss_pred hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239 165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK 219 (410)
Q Consensus 165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K 219 (410)
|+++||++|++ + .||+||+|+|+||+++|+...|.+. .++.+|+.-
T Consensus 151 t~~~Ei~~q~~--~-~~d~vv~~vG~Gg~~~Gi~~~~~~~------~~~~~vi~V 196 (298)
T TIGR01139 151 TTGPEIWRDTD--G-KLDAFVAGVGTGGTITGVGEVLKEQ------KPNIKIVAV 196 (298)
T ss_pred HHHHHHHHHhC--C-CCCEEEEecchhHhHHHHHHHHHhc------CCCCEEEEE
Confidence 99999999964 2 4999999999999999997777543 235677753
No 109
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=3.1e-34 Score=280.53 Aligned_cols=177 Identities=25% Similarity=0.325 Sum_probs=147.2
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||++. .+||+|+|.+|||||||||++..++..+.+.|.+.+ +++|+||+|.|+|++|+++|++|+|||
T Consensus 58 ~TPLv~~---------~~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~~~v-v~aSsGN~g~slA~~aa~~G~~~~i~v 127 (338)
T PRK06450 58 RTPLIKK---------GNIWFKLDFLNPTGSYKDRGSVTLISYLAEKGIKQI-SEDSSGNAGASIAAYGAAAGIEVKIFV 127 (338)
T ss_pred CCCceec---------CCEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCEE-EEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 6898863 379999999999999999999999999998887665 559999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|++.+ +.|+.+|+.+||+|+.++ ++++++.+. +++. +.+|+ .+.. ||+ ..+|++|+++||++|+
T Consensus 128 P~~~~---~~k~~~i~~~GA~vi~v~-~~~~~~~~~----a~~~--g~~~~-~~~~--np~---~ieG~kTia~EI~eql 191 (338)
T PRK06450 128 PETAS---GGKLKQIESYGAEVVRVR-GSREDVAKA----AENS--GYYYA-SHVL--QPQ---FRDGIRTLAYEIAKDL 191 (338)
T ss_pred cCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHH----HHhc--CeEec-cCCC--Ccc---HHHHHHHHHHHHHHHc
Confidence 98654 488999999999999995 557766554 3333 34444 4433 444 4789999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK 402 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~ 402 (410)
+ +..||+||+|+|+||+++|++++|++. .+|||+|||++++..
T Consensus 192 ~--~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~ 242 (338)
T PRK06450 192 D--WKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPL 242 (338)
T ss_pred C--CCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHH
Confidence 5 346999999999999999999999864 379999999997643
No 110
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.6e-34 Score=281.85 Aligned_cols=186 Identities=20% Similarity=0.133 Sum_probs=147.0
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---C-ceEEEeCccHHHHHHHHHHHHcC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLN 87 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~-~~v~~~ssGN~g~a~A~~a~~~G 87 (410)
...+|||++++++.... +.+||+|+|++|||||||||.+...+..+.+.+. + ..|+++|+||||+|+|++|+.+|
T Consensus 14 ~~g~TPl~~l~~l~~~~-g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G 92 (323)
T PLN00011 14 LIGNTPMVYLNNIVDGC-VARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARG 92 (323)
T ss_pred HhCCCceEEccccCCCC-CceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcC
Confidence 45799999999888654 4799999999999999999988877777777663 2 45666799999999999999999
Q ss_pred CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccch
Q psy11239 88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQS 164 (410)
Q Consensus 88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~~ 164 (410)
++|+||||+.++ +.|+++|+.|||+|+.++.. ..++.++++.+++++.+ .+|+ .+||+|+. ..||.
T Consensus 93 ~~~~ivvp~~~~---~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~--~~~~------~~~~~n~~n~~~~~~ 161 (323)
T PLN00011 93 YKVILVMPSTMS---LERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTP--GGYI------PQQFENPANPEIHYR 161 (323)
T ss_pred CeEEEEeCCCCC---HHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCC--CeEE------eccccCCccHHHHHH
Confidence 999999999987 48999999999999999832 24556777777766431 2333 34554331 34799
Q ss_pred hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
++++||++|+. + .||+||+|+||||+++|+...|.+. .+.++|+.
T Consensus 162 t~~~EI~~q~~--~-~~D~iv~~vGtGGt~aGi~~~lk~~------~~~~kvig 206 (323)
T PLN00011 162 TTGPEIWRDSA--G-KVDILVAGVGTGGTATGVGKFLKEK------NKDIKVCV 206 (323)
T ss_pred HHHHHHHHhcC--C-CCCEEEEeCCchHHHHHHHHHHHhh------CCCCEEEE
Confidence 99999999953 2 5999999999999999997776542 24667774
No 111
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.8e-34 Score=282.59 Aligned_cols=182 Identities=27% Similarity=0.307 Sum_probs=147.8
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCC-ceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKK-RIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~-~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
..++|||+++++|++.+ +.+||+|+|++||+||||||.+...+..+.+.+.. ..|+++|+||||+++|++|+.+|+||
T Consensus 20 ~i~~TPl~~~~~l~~~~-g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~ 98 (338)
T PRK06608 20 YLHLTPIVHSESLNEML-GHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKT 98 (338)
T ss_pred cCcCCCccchHhHHHHh-CCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCE
Confidence 56899999999999887 67999999999999999999988777777776652 45666799999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E 169 (410)
+||||+.++ +.|+++|+.|||+|+.++ +.+++.+++.+ ..+. + .| +.+||+++ .++|++|+++|
T Consensus 99 ~vv~p~~~~---~~k~~~l~~~GA~V~~~~--~~~~~~~~a~~-~~~~--~-~~------~~~~~~~~~~~~g~~t~a~E 163 (338)
T PRK06608 99 RIYLPLNTS---KVKQQAALYYGGEVILTN--TRQEAEEKAKE-DEEQ--G-FY------YIHPSDSDSTIAGAGTLCYE 163 (338)
T ss_pred EEEECCCCC---HHHHHHHHhCCCEEEEEC--CHHHHHHHHHH-HHhC--C-CE------EcCCCCCHHHhccHHHHHHH
Confidence 999999887 589999999999999996 34666666666 3321 2 22 35777665 47899999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
|++|++ ..||+||+|+|+||+++|+...+.. ..+.++|+.
T Consensus 164 i~~q~~---~~~D~vv~~vG~GGt~~Gi~~~~k~------~~~~~~vig 203 (338)
T PRK06608 164 ALQQLG---FSPDAIFASCGGGGLISGTYLAKEL------ISPTSLLIG 203 (338)
T ss_pred HHHhcC---CCcCEEEEeechhHHHHHHHHHHHh------cCCCCEEEE
Confidence 999964 2589999999999999999655432 223567774
No 112
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.4e-34 Score=285.23 Aligned_cols=175 Identities=21% Similarity=0.173 Sum_probs=146.7
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+.++ |+++|+||||+|+|++|+.+|++|+
T Consensus 25 ~~G~TPL~~~~~l~~~~-g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~-vV~aSsGN~G~AlA~~aa~~G~~~~ 102 (351)
T PRK06352 25 AEGNTPLIPLPNLSKEL-GVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAEA-VICASTGNTSAAAAAYATRAGLKAY 102 (351)
T ss_pred CCCCCCeeEcHhhHHHh-CCeEEEEecCCCCccChHHHHHHHHHHHHHHCCCCE-EEEECCcHHHHHHHHHHHHcCCcEE
Confidence 46899999999999887 579999999999999999999888877777777654 5556999999999999999999999
Q ss_pred EEeccCC-ccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHH
Q psy11239 92 IYIGEND-YKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~-~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI 170 (410)
||||+.. + +.|+.+|++|||+|+.++ ++++++.+.+.+++++. .+|. .++++...+.||+|+++||
T Consensus 103 ivvp~~~~~---~~k~~~~~a~GA~V~~~~-~~~~~~~~~a~~~~~~~---~~~~------~~~~n~~~~~G~~t~~~EI 169 (351)
T PRK06352 103 IVIPEGKVA---LGKLAQAVMYGADIISIQ-GNFDEALKSVRELAETE---AVTL------VNSVNPYRLEGQKTAAFEI 169 (351)
T ss_pred EEEeCCCCc---HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc---Cccc------ccCCCccceeeHHHHHHHH
Confidence 9999974 4 589999999999999998 78899888888877653 1221 2333222468999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeecccccccc
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYC 204 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~ 204 (410)
++|+. ..||+||+|+|+||+++|+...|.++
T Consensus 170 ~~Q~~---~~~D~vvv~vG~GG~~~Gi~~~lk~~ 200 (351)
T PRK06352 170 CEQLG---SAPDVLAIPVGNAGNISAYWKGFKEW 200 (351)
T ss_pred HHHcC---CCCCEEEEECCchHHHHHHHHHHHHH
Confidence 99964 36999999999999999998887653
No 113
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.3e-34 Score=281.10 Aligned_cols=183 Identities=25% Similarity=0.326 Sum_probs=150.7
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
.+++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+....|+++||||||+|+|++|+.+|++|+
T Consensus 14 ~ig~TPl~~~~~l~~~~-g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~ 92 (304)
T cd01562 14 VVRRTPLLTSPTLSELL-GAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIPAT 92 (304)
T ss_pred cCCCCCcccchhhHHHh-CCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEE
Confidence 56899999999999887 57999999999999999999876665555555534445667999999999999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239 92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI 170 (410)
+|||+..+ +.|+++|+.|||+|+.++ ++++++++.+.+++++. +.+| .+||+++ .+.|++++++||
T Consensus 93 ivvp~~~~---~~k~~~l~~~Ga~vi~~~-~~~~~~~~~a~~la~~~--~~~~-------~~~~~n~~~~~g~~~~~~Ei 159 (304)
T cd01562 93 IVMPETAP---AAKVDATRAYGAEVVLYG-EDFDEAEAKARELAEEE--GLTF-------IHPFDDPDVIAGQGTIGLEI 159 (304)
T ss_pred EEECCCCC---HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHhc--CCEE-------eCCCCCcchhccHHHHHHHH
Confidence 99999887 589999999999999998 67899998888887764 2222 4556554 368899999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
++|++ .||+||+|+||||+++|+...|.... +..+|+.
T Consensus 160 ~~q~~----~~d~vv~~vGtGgt~~Gi~~~lk~~~------~~~kvig 197 (304)
T cd01562 160 LEQVP----DLDAVFVPVGGGGLIAGIATAVKALS------PNTKVIG 197 (304)
T ss_pred HHhcC----CCCEEEEecCHHHHHHHHHHHHHHhC------CCCEEEE
Confidence 99964 29999999999999999977775421 3567764
No 114
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=6.6e-34 Score=290.83 Aligned_cols=194 Identities=18% Similarity=0.166 Sum_probs=157.6
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|||+++++++... +.+||+|+|++||+||||+|++.+++..+.+.|. +..|+++|+||||+++|++|+.+|++|+
T Consensus 11 ~TPl~~~~~l~~~~-~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~~~~ 89 (454)
T TIGR01137 11 NTPLVRLNKVSKGI-KCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKGYKCI 89 (454)
T ss_pred CCceEEccccCCCC-CceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCeEE
Confidence 89999999998766 5799999999999999999999999999988776 2345669999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HH---HHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LK---EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG 350 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g 350 (410)
+|||+..++ .|+.+++.+||+|+.++... ++ ...+.+.++.++. ++ .|+++++.+ +.+...||.|+|
T Consensus 90 iv~p~~~~~---~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~-~~-~~~~~~~~~----~~~~~~~~~t~~ 160 (454)
T TIGR01137 90 IVLPEKMSN---EKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREI-PG-AHILDQYNN----PSNPLAHYDGTG 160 (454)
T ss_pred EEeCCCcCH---HHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhC-CC-cEecccCCC----hhhHHHHHHhhH
Confidence 999986543 78999999999999997432 32 2244555555543 23 344433331 222457999999
Q ss_pred HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCc
Q psy11239 351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRT 404 (410)
Q Consensus 351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~ 404 (410)
.||++|++ ..||+||+|+|||||++|++.++++. ++|||||||+++....+
T Consensus 161 ~Ei~~q~~---~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~ 213 (454)
T TIGR01137 161 PEILEQCE---GKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQP 213 (454)
T ss_pred HHHHHHhC---CCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCC
Confidence 99999995 36999999999999999999999864 89999999999886654
No 115
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=2.4e-34 Score=288.89 Aligned_cols=189 Identities=16% Similarity=0.128 Sum_probs=149.7
Q ss_pred CCCCcCccccccccccC-------CceEEEeeCCCCC-CCchhhhHHHHHHHH-----HHHhcC----------------
Q psy11239 13 GRPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK---------------- 63 (410)
Q Consensus 13 ~~~TPl~~~~~l~~~~~-------~~~i~~K~E~~np-tGS~K~R~~~~~~~~-----~~~~~~---------------- 63 (410)
.++|||++++.|++.+| +.+||+|+|++|| |||||||+++..+.. +++.+.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 67999999999988764 1699999999999 999999987655432 223321
Q ss_pred ----CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcc
Q psy11239 64 ----KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNI 139 (410)
Q Consensus 64 ----~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~ 139 (410)
...|+++||||||+|+|++|+.+|++|+||||++++ +.|+++|+.|||+|+.++ ++++++.+.+.+++++.+
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~---~~K~~~ir~~GAeVi~~~-~~~~~a~~~A~~la~~~~ 228 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADAR---QWKKDKLRSHGVTVVEYE-GDYGVAVEEGRKAAESDP 228 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhcC
Confidence 124666799999999999999999999999999988 589999999999999998 789999999998877541
Q ss_pred cCCcccccccccCcccccc-ccccchhHHHHHHHhhhhc----C-CCccEEEEecCCCCceeeccccccccccccccccC
Q psy11239 140 LNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQLNFN----F-YNKKYILACVGGGSNALGRPTPIYYCKNISNILKG 213 (410)
Q Consensus 140 ~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~~q~~~~----~-~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~ 213 (410)
..| +.+||+++ .++||+|+++||++|++.. + ..||+||+|+|+||+++|+...|.+.. .++
T Consensus 229 --~~~------~~~~~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~-----~~~ 295 (441)
T PRK02991 229 --NCY------FIDDENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAF-----GDH 295 (441)
T ss_pred --CeE------eCCCCCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhc-----CCC
Confidence 223 23555444 5799999999999997532 1 248899999999999999977775421 135
Q ss_pred ceeEE
Q psy11239 214 SKIFL 218 (410)
Q Consensus 214 ~~v~~ 218 (410)
++|+.
T Consensus 296 ~kVig 300 (441)
T PRK02991 296 VHCFF 300 (441)
T ss_pred CEEEE
Confidence 67774
No 116
>KOG1252|consensus
Probab=100.00 E-value=4.9e-34 Score=266.93 Aligned_cols=187 Identities=18% Similarity=0.130 Sum_probs=155.8
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---C-ceEEEeCccHHHHHHHHHHHHcC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---K-RIICETGAGMHGVSTATSCCLLN 87 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~-~~v~~~ssGN~g~a~A~~a~~~G 87 (410)
++++|||+.++++..-+ .++||+|+|++||+||.|||-+..++..++..+. + .+++++||||+|+++|++|+.+|
T Consensus 49 liG~TPlv~ln~i~~g~-~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~G 127 (362)
T KOG1252|consen 49 LIGNTPLVKLNKIAGGC-VARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRG 127 (362)
T ss_pred HhCCCceEEeccccCCc-cceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcC
Confidence 67899999999986554 7899999999999999999987777777776663 3 59999999999999999999999
Q ss_pred CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC-H---HHHHHHHHHHHhhcccCCcccccccccCccccccc--cc
Q psy11239 88 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-L---KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RD 161 (410)
Q Consensus 88 ~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~ 161 (410)
+||+++||+..+ .+|...|++|||+||++++.. + .-++..+.++..+.+ ..|+ ..||.||. ..
T Consensus 128 yk~i~tmP~~ms---~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~p--na~~------l~Qf~np~Np~~ 196 (362)
T KOG1252|consen 128 YKCIITMPEKMS---KEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTP--NAYI------LDQFHNPGNPLA 196 (362)
T ss_pred ceEEEEechhhh---HHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCC--ChHH------HHHhcCCCCccc
Confidence 999999999988 599999999999999998542 3 337888888877663 2333 35555552 58
Q ss_pred cchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239 162 FQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK 219 (410)
Q Consensus 162 g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K 219 (410)
||.++++|||.|+. ..+|.||.++|||||++|+ .+.+.++.++++|+.-
T Consensus 197 hy~ttg~EI~~q~~---g~vDi~V~gaGTGGTitgv------GRylke~~~~~kVv~v 245 (362)
T KOG1252|consen 197 HYETTGPEIWRQLD---GKVDIFVAGAGTGGTITGV------GRYLKEQNPNIKVVGV 245 (362)
T ss_pred ccccccHHHHHHhc---CCCCEEEeccCCCceeech------hHHHHHhCCCCEEEEe
Confidence 99999999999973 4799999999999999999 6667777778888854
No 117
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=8.9e-34 Score=287.76 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=158.3
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||++++ +...+ +.+||+|+|++|||||||||++..++..+.+.+.+.+++ +|+||||+|+|++|+++|++|+|||
T Consensus 66 ~TPLv~~~-~~~~~-g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~v 142 (442)
T PRK05638 66 GTPLIRAR-ISEKL-GENVYIKDETRNPTGSFRDRLATVAVSYGLPYAANGFIV-ASDGNAAASVAAYSARAGKEAFVVV 142 (442)
T ss_pred CCcEEccc-chHHh-CCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCCCEEEE-eCCChHHHHHHHHHHHcCCCEEEEE
Confidence 69999874 65555 579999999999999999999999999998888877665 9999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|++.+ +.|+.+++.+||+|+.++ ++++++++.+.+..++. .+|+++++. ||+ ..+|++|+++||++|+
T Consensus 143 p~~~~---~~k~~~~~~~GA~vi~v~-~~~~~~~~~a~~~~~~~---~~~~~~~~~--np~---~~eG~~t~a~Ei~eq~ 210 (442)
T PRK05638 143 PRKVD---KGKLIQMIAFGAKIIRYG-ESVDEAIEYAEELARLN---GLYNVTPEY--NII---GLEGQKTIAFELWEEI 210 (442)
T ss_pred eCCCC---HHHHHHHHhcCcEEEEEC-CCHHHHHHHHHHHHHhC---CeEecCCCC--Chh---HhhhHHHHHHHHHHHH
Confidence 98644 488999999999999995 66999998888876654 355555443 344 4789999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK 402 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~ 402 (410)
. ||+||+|+|+||+++|++++|++. .+|||+|||++++..
T Consensus 211 ~-----pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~ 258 (442)
T PRK05638 211 N-----PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPI 258 (442)
T ss_pred C-----cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHH
Confidence 2 999999999999999999999863 379999999887653
No 118
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=3.5e-34 Score=280.33 Aligned_cols=190 Identities=21% Similarity=0.199 Sum_probs=154.3
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
..++|||+++++|++.+++.+||+|+|++|||||||||.+...+..+.+.+.. .|+++||||||+|+|++|+.+|++|+
T Consensus 19 ~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~-~vv~~SsGN~g~alA~~a~~~G~~~~ 97 (324)
T cd01563 19 GEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGVK-AVACASTGNTSASLAAYAARAGIKCV 97 (324)
T ss_pred CCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCCC-EEEEeCCCHHHHHHHHHHHHcCCceE
Confidence 45789999999999877568999999999999999999988777777776644 45567999999999999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239 92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI 170 (410)
||||+.++ +.|+++|+++||+|+.++ ++++++.+.+.+++++. .+ +.+||+|+ .+.||.|++.||
T Consensus 98 ivvp~~~~---~~k~~~l~~~GA~Vi~~~-~~~~~~~~~a~~~~~~~---~~-------~~~~~~n~~~~~g~~t~~~Ei 163 (324)
T cd01563 98 VFLPAGKA---LGKLAQALAYGATVLAVE-GNFDDALRLVRELAEEN---WI-------YLSNSLNPYRLEGQKTIAFEI 163 (324)
T ss_pred EEEeCCCC---HHHHHHHHHcCCEEEEEC-CcHHHHHHHHHHHHHhc---Ce-------eccCCCCcceecchhhhHHHH
Confidence 99999887 589999999999999998 67888888887776642 12 34667766 478999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
++|+. +..||+||+|+||||+++|+...|..........+..+|+.
T Consensus 164 ~~q~~--~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vig 209 (324)
T cd01563 164 AEQLG--WEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVG 209 (324)
T ss_pred HHHcC--CCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEE
Confidence 99964 22589999999999999999887765332211112456664
No 119
>PLN02569 threonine synthase
Probab=100.00 E-value=1.1e-33 Score=287.14 Aligned_cols=191 Identities=14% Similarity=0.169 Sum_probs=161.1
Q ss_pred ccccccccccccc-ccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC----CceEEecCchHHHHHHHHHHHHcCCc
Q psy11239 198 PTPIYYCKNISNI-LKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNLE 272 (410)
Q Consensus 198 ~tpl~~~~~L~~~-~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~----~~~v~~~ssGN~g~a~A~~a~~~G~~ 272 (410)
.|||+++++|.+. ++..+||+|+|.+|||||||||++...+..+.+.|. ...|+++|+||||.|+|++|+.+|++
T Consensus 133 ~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~ 212 (484)
T PLN02569 133 NSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIP 212 (484)
T ss_pred CCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCCe
Confidence 8999999999876 633599999999999999999999998888877654 13466799999999999999999999
Q ss_pred EEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHH
Q psy11239 273 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE 352 (410)
Q Consensus 273 ~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~E 352 (410)
|+||||++..+ ..++.+++.+||+|+.++ ++++++++.+.+..++. + +|+.+++ ||| ..+|++|+++|
T Consensus 213 ~~I~vP~~~~~--~~k~~qi~a~GA~Vi~v~-g~~d~a~~~a~e~~~~~--~-~~~~n~~---Np~---~ieG~kT~a~E 280 (484)
T PLN02569 213 SIVFLPADKIS--IAQLVQPIANGALVLSID-TDFDGCMRLIREVTAEL--P-IYLANSL---NSL---RLEGQKTAAIE 280 (484)
T ss_pred EEEEEcCCCCC--HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHHc--C-CEecCCC---Ccc---hhHhHHHHHHH
Confidence 99999986444 478899999999999995 66999999988877664 3 4555443 444 46899999999
Q ss_pred HHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239 353 IHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK 402 (410)
Q Consensus 353 i~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~ 402 (410)
|++|+. +..||+||+|+|+||+++|++++|++. .+|||+|||++++..
T Consensus 281 I~eQl~--~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl 336 (484)
T PLN02569 281 ILQQFD--WEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPL 336 (484)
T ss_pred HHHHcC--CCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHH
Confidence 999995 335999999999999999999999863 579999999998654
No 120
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=2.9e-34 Score=276.75 Aligned_cols=184 Identities=21% Similarity=0.143 Sum_probs=149.8
Q ss_pred CCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 14 ~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
.+|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..+.+.+. +.+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~-g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGT-GAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCC-CCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 489999999999876 6799999999999999999988777666766665 245666799999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCH----HHHHHHHHHHHhhcccCCcccccccccCccccccc-cccch-
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNL----KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV-RDFQS- 164 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~- 164 (410)
+||||..++ +.|+++|+.|||+|+.++ +++ +++++.+.+++++. ++ +| +.+||++|. +.|+.
T Consensus 80 ~i~vp~~~~---~~k~~~~~~~Ga~v~~~~-~~~~~~~~~~~~~a~~~~~~~-~~-~~------~~~~~~~p~~~~g~~~ 147 (291)
T cd01561 80 IIVMPETMS---EEKRKLLRALGAEVILTP-EAEADGMKGAIAKARELAAET-PN-AF------WLNQFENPANPEAHYE 147 (291)
T ss_pred EEEECCCCC---HHHHHHHHHcCCEEEEeC-CCCcCCHHHHHHHHHHHHhhC-CC-cE------EecCCCCchHHHHHHH
Confidence 999999877 589999999999999998 444 78888888877653 22 23 356676663 56665
Q ss_pred hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239 165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK 219 (410)
Q Consensus 165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K 219 (410)
|+++||++|++. .||+||+|+|+||+++|+...|.... +.++|+.-
T Consensus 148 t~~~Ei~~ql~~---~~d~vv~~~G~Gg~~~Gi~~~~~~~~------~~~~vi~V 193 (291)
T cd01561 148 TTAPEIWEQLDG---KVDAFVAGVGTGGTITGVARYLKEKN------PNVRIVGV 193 (291)
T ss_pred HHHHHHHHHcCC---CCCEEEEeCChHHHHHHHHHHHHHhC------CCCEEEEE
Confidence 999999999752 69999999999999999987775432 35677753
No 121
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=1.4e-33 Score=277.86 Aligned_cols=180 Identities=24% Similarity=0.304 Sum_probs=152.8
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
.|||+++ +.+||+|+|++|||||||||++..++..+.+.|.+.+|+ +|+||||+|+|++|+++|++|+|||
T Consensus 64 ~Tpl~~~--------~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~v~v 134 (347)
T PRK08329 64 ITPTVKR--------SIKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGINEVVI-DSSGNAALSLALYSLSEGIKVHVFV 134 (347)
T ss_pred CCccccC--------CCeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCCEEEE-ECCCcHHHHHHHHHHHcCCcEEEEE
Confidence 6888864 258999999999999999999999999999988877655 9999999999999999999999999
Q ss_pred cCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhh
Q psy11239 278 GENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357 (410)
Q Consensus 278 p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~ 357 (410)
|++.+ +.|+.+++.+||+|+.++ ++++++...+.++.++. +.+|+ .++. ||| ..+|++|+++||++|+
T Consensus 135 p~~~~---~~k~~~~~~~GA~v~~v~-~~~~~~~~~a~~l~~~~--~~~~~-~~~~--np~---~~eG~~t~~~Ei~eql 202 (347)
T PRK08329 135 SYNAS---KEKISLLSRLGAELHFVE-GDRMEVHEEAVKFSKRN--NIPYV-SHWL--NPY---FLEGTKTIAYEIYEQI 202 (347)
T ss_pred CCCCh---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCeec-cCCC--Cch---hhccchhHHHHHHHHc
Confidence 98644 489999999999999996 55777777777776654 34554 3333 455 4689999999999999
Q ss_pred hhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239 358 NFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK 402 (410)
Q Consensus 358 ~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~ 402 (410)
+ .||+||+|+|+||+++|++++|++. .+|||+|||+++...
T Consensus 203 ~----~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~ 251 (347)
T PRK08329 203 G----VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESL 251 (347)
T ss_pred C----CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchH
Confidence 4 6999999999999999999999863 489999999997654
No 122
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=3.1e-33 Score=262.91 Aligned_cols=183 Identities=30% Similarity=0.384 Sum_probs=156.2
Q ss_pred ccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC--CceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK--KRIICETGAGMHGVSTATSCCLLNLESIIY 276 (410)
Q Consensus 199 tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~--~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv 276 (410)
|||++++++.+.. +.+||+|+|+.||+||||+|++.+++..+.+.+. ...|+++|+||+|.|+|++|+.+|++|++|
T Consensus 1 TPl~~~~~l~~~~-~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~ 79 (244)
T cd00640 1 TPLVRLKRLSKLG-GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIV 79 (244)
T ss_pred CCeeEcccccccc-CCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEE
Confidence 7999999888754 6899999999999999999999999999988884 455667999999999999999999999999
Q ss_pred EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChh-HHHhhhhhHHHHHHH
Q psy11239 277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT-IVRDFQSIIGYEIHQ 355 (410)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~t~g~Ei~~ 355 (410)
+|...+ +.++++|+.+||+|+.++ ++++++.+.+.+.+++. .+.+ ++ ++|.+ ....|+.+++.||.+
T Consensus 80 ~p~~~~---~~~~~~~~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~-~~~~-~~------~~~~n~~~~~g~~~~~~Ei~~ 147 (244)
T cd00640 80 MPEGAS---PEKVAQMRALGAEVVLVP-GDFDDAIALAKELAEED-PGAY-YV------NQFDNPANIAGQGTIGLEILE 147 (244)
T ss_pred ECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhC-CCCE-ec------CCCCCHHHHHHHHHHHHHHHH
Confidence 998654 488999999999999996 44888988888888774 2344 44 44422 256788899999999
Q ss_pred hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEcc
Q psy11239 356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIES 396 (410)
Q Consensus 356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~ 396 (410)
|++. ..||+||+|+||||+++|++.+|++. .+|||+|||
T Consensus 148 q~~~--~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 148 QLGG--QKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred HcCC--CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 9962 26999999999999999999999865 899999998
No 123
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=2.8e-33 Score=263.22 Aligned_cols=173 Identities=29% Similarity=0.362 Sum_probs=146.7
Q ss_pred CcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC--CceEEEeCccHHHHHHHHHHHHcCCcEEEE
Q psy11239 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK--KRIICETGAGMHGVSTATSCCLLNLESIIY 93 (410)
Q Consensus 16 TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~--~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv 93 (410)
|||+++++|++.. +.+||+|+|++|||||||||.+...+..+.+.+. ..+|+++||||||+|+|++|+.+|+||++|
T Consensus 1 TPl~~~~~l~~~~-~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~ 79 (244)
T cd00640 1 TPLVRLKRLSKLG-GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIV 79 (244)
T ss_pred CCeeEcccccccc-CCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEE
Confidence 8999999998754 7899999999999999999998877777777763 556777799999999999999999999999
Q ss_pred eccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHHHH
Q psy11239 94 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ 172 (410)
Q Consensus 94 ~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~~ 172 (410)
+|+..+ +.|+++|+.+||+|+.++ ++++++.+.+.+++++. .+ +| +.+||+|+ .+.|+.++++||++
T Consensus 80 ~p~~~~---~~~~~~~~~~Ga~v~~~~-~~~~~~~~~a~~~~~~~-~~-~~------~~~~~~n~~~~~g~~~~~~Ei~~ 147 (244)
T cd00640 80 MPEGAS---PEKVAQMRALGAEVVLVP-GDFDDAIALAKELAEED-PG-AY------YVNQFDNPANIAGQGTIGLEILE 147 (244)
T ss_pred ECCCCC---HHHHHHHHHCCCEEEEEC-CCHHHHHHHHHHHHHhC-CC-CE------ecCCCCCHHHHHHHHHHHHHHHH
Confidence 999876 589999999999999998 67899988888888763 12 22 34666555 47899999999999
Q ss_pred hhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 173 QLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 173 q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
|++.. .||+||+|+|+||+++|+...+.+
T Consensus 148 q~~~~--~~d~ivvp~GtGg~~~G~~~~~~~ 176 (244)
T cd00640 148 QLGGQ--KPDAVVVPVGGGGNIAGIARALKE 176 (244)
T ss_pred HcCCC--CCCEEEEecCccHHHHHHHHHHHH
Confidence 97522 599999999999999999777754
No 124
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=6.1e-34 Score=284.86 Aligned_cols=190 Identities=15% Similarity=0.115 Sum_probs=149.9
Q ss_pred CCCCCcCccccccccccC-------CceEEEeeCCCCC-CCchhhhHHHHHHHH-----HHHhcC---------------
Q psy11239 12 KGRPTPIYYCKNISNILK-------GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK--------------- 63 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~-------~~~i~~K~E~~np-tGS~K~R~~~~~~~~-----~~~~~~--------------- 63 (410)
...+|||++++++++.++ +.+||+|+|++|| |||||||++..++.. +.+.+.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 667999999999988552 4699999999999 999999988765542 333332
Q ss_pred -----CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhc
Q psy11239 64 -----KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNN 138 (410)
Q Consensus 64 -----~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~ 138 (410)
+..|+++||||||+|+|++|+.+|+||+||||++++ +.|+++|+.|||+|+.++ ++|+++++.+++++++.
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~---~~K~~~ir~~GAeVv~~~-~~~~~a~~~A~~la~~~ 222 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAK---QWKKDKLRSKGVTVVEYE-SDYGVAVEEGRKNADAD 222 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc
Confidence 135666799999999999999999999999999988 599999999999999998 78999999999988764
Q ss_pred ccCCcccccccccCcccc-ccccccchhHHHHHHHhhhhc----C-CCccEEEEecCCCCceeecccccccccccccccc
Q psy11239 139 ILNSHYLIGTASGPHPYP-TIVRDFQSIIGYEIHQQLNFN----F-YNKKYILACVGGGSNALGRPTPIYYCKNISNILK 212 (410)
Q Consensus 139 ~~~~~~~~~~~~~~~p~~-~~~~~g~~ti~~EI~~q~~~~----~-~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~ 212 (410)
+ ..|+. ++++ .+.++||+|++.||++|+... + ..||+|++|+|+||+++|+...|.+.. .+
T Consensus 223 ~--~~~~~------d~~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~-----~~ 289 (431)
T TIGR02035 223 P--MCYFV------DDENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAF-----GD 289 (431)
T ss_pred C--CeEEC------CCCCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhc-----CC
Confidence 2 22322 2222 124699999999999997521 1 258899999999999999977775421 13
Q ss_pred CceeEE
Q psy11239 213 GSKIFL 218 (410)
Q Consensus 213 ~~~v~~ 218 (410)
+++|+.
T Consensus 290 ~vkvi~ 295 (431)
T TIGR02035 290 NVHCFF 295 (431)
T ss_pred CCEEEE
Confidence 577774
No 125
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=3.6e-34 Score=286.24 Aligned_cols=190 Identities=17% Similarity=0.128 Sum_probs=149.3
Q ss_pred hhhcCCCCCCCcCccccccccccCCceEEEeeCCC-CCCCchhhhHHHHHHHHH--HHhcCC------------------
Q psy11239 6 LFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDL-NFTGAHKMNNSIAQSLLA--KFLKKK------------------ 64 (410)
Q Consensus 6 ~~~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~-nptGS~K~R~~~~~~~~~--~~~~~~------------------ 64 (410)
.|.......+|||+++++|++.+|..+||+|+|++ |||||||||++...+... ++.+.+
T Consensus 35 ~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 114 (399)
T PRK08206 35 FHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKL 114 (399)
T ss_pred HHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhc
Confidence 34334567899999999999988547999999998 599999999765333222 222221
Q ss_pred --ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCC
Q psy11239 65 --RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNS 142 (410)
Q Consensus 65 --~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~ 142 (410)
.+|+++|+||||+|+|++|+.+|++|+||||+.++ +.|+..|+.|||+|+.++ +++++++..+.+.+++. .
T Consensus 115 ~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~---~~k~~~i~~~GA~Vi~v~-~~~~~~~~~a~~~~~~~---g 187 (399)
T PRK08206 115 GDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSS---EERVDAIRALGAECIITD-GNYDDSVRLAAQEAQEN---G 187 (399)
T ss_pred cCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHHcCCEEEEeC-CCHHHHHHHHHHHHHHc---C
Confidence 25677899999999999999999999999999987 589999999999999998 68999999998887654 2
Q ss_pred cccccccccCccccc--c-ccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 143 HYLIGTASGPHPYPT--I-VRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 143 ~~~~~~~~~~~p~~~--~-~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
+|++.... ..||++ + .++||+|+++||++|+...+..||+||+|+|+||+++|+...|.+
T Consensus 188 ~~~v~~~~-~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~ 250 (399)
T PRK08206 188 WVVVQDTA-WEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAE 250 (399)
T ss_pred CEEecCcc-ccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHH
Confidence 33332211 135654 3 479999999999999763333699999999999999999888754
No 126
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=5.4e-34 Score=281.74 Aligned_cols=174 Identities=20% Similarity=0.183 Sum_probs=145.5
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+.+.+... |+++||||||+++|++|+.+|++|+
T Consensus 28 ~~g~TPl~~~~~l~~~~-g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~~-iv~aSsGN~g~alA~~a~~~G~~~~ 105 (353)
T PRK07409 28 GEGNTPLIPAPNLSELL-GVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAKA-VICASTGNTSASAAAYAARAGLKAF 105 (353)
T ss_pred CCCCCCEEEchhhHHHh-CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCCE-EEEECCcHHHHHHHHHHHHcCCCEE
Confidence 55899999999998876 579999999999999999999887777777766654 5556999999999999999999999
Q ss_pred EEeccCC-ccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239 92 IYIGEND-YKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 169 (410)
Q Consensus 92 iv~p~~~-~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E 169 (410)
||||+.. + +.|+++|+.|||+|+.++ ++++++.+.+.++.++. + +|+ .+++ || .+.||+|+++|
T Consensus 106 ivvP~~~~~---~~k~~~~~~~GA~Vi~~~-~~~~~~~~~a~~l~~~~--~-~~~------~~~~-n~~~~~g~~t~~~E 171 (353)
T PRK07409 106 VLIPEGKIA---LGKLAQAVMYGAEIIQID-GNFDDALEIVRELAEKY--P-VTL------VNSV-NPYRIEGQKTAAFE 171 (353)
T ss_pred EEEcCCCCc---hhhHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc--C-cee------cCCC-CchhhhhHHHHHHH
Confidence 9999974 4 479999999999999998 78999988888876653 1 332 2333 23 46899999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeecccccccc
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYC 204 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~ 204 (410)
|++|+. ..||+||+|+|+||+++|+..+|.+.
T Consensus 172 I~~q~~---~~~d~iv~~vG~GG~~~Gi~~g~~~~ 203 (353)
T PRK07409 172 IVDALG---DAPDYHCIPVGNAGNITAYWKGYKEY 203 (353)
T ss_pred HHHHhC---CCCCEEEEeCCChHHHHHHHHHHHHH
Confidence 999963 35899999999999999998777543
No 127
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=4.4e-34 Score=289.98 Aligned_cols=173 Identities=18% Similarity=0.169 Sum_probs=146.0
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
..++|||++++ +.+.+ +.+||+|+|++|||||||||.+...+..+.+.+...+++ +|+||||+|+|++|+.+|++|+
T Consensus 63 ~~G~TPLv~~~-~~~~~-g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~ 139 (442)
T PRK05638 63 GEGGTPLIRAR-ISEKL-GENVYIKDETRNPTGSFRDRLATVAVSYGLPYAANGFIV-ASDGNAAASVAAYSARAGKEAF 139 (442)
T ss_pred CCCCCcEEccc-chHHh-CCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCCCEEEE-eCCChHHHHHHHHHHHcCCCEE
Confidence 34679999984 66666 569999999999999999999887777777776655555 6999999999999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239 92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI 170 (410)
||||++++ +.|+.+|+.|||+|+.++ ++++++++.+.+.+++. .+|+ .++|+|| .++|++|+++||
T Consensus 140 i~vp~~~~---~~k~~~~~~~GA~vi~v~-~~~~~~~~~a~~~~~~~---~~~~------~~~~~np~~~eG~~t~a~Ei 206 (442)
T PRK05638 140 VVVPRKVD---KGKLIQMIAFGAKIIRYG-ESVDEAIEYAEELARLN---GLYN------VTPEYNIIGLEGQKTIAFEL 206 (442)
T ss_pred EEEeCCCC---HHHHHHHHhcCcEEEEEC-CCHHHHHHHHHHHHHhC---CeEe------cCCCCChhHhhhHHHHHHHH
Confidence 99999887 589999999999999998 78999998888876643 2342 3344444 478999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccccc
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCK 205 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~ 205 (410)
++|+. ||+||+|+|+||+++|+...|.++.
T Consensus 207 ~eq~~-----pD~vv~pvG~Gg~~~Gi~~gfkel~ 236 (442)
T PRK05638 207 WEEIN-----PTHVIVPTGSGSYLYSIYKGFKELL 236 (442)
T ss_pred HHHHC-----cCEEEEeCCchHHHHHHHHHHHHHH
Confidence 99963 8999999999999999999997653
No 128
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=4.8e-34 Score=279.19 Aligned_cols=165 Identities=23% Similarity=0.232 Sum_probs=135.2
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
-.++|||++.+ +||+|+|++|||||||||.+...+..+++.+.+.+++ +||||||+|+|++|+.+|++|+
T Consensus 55 geG~TPLv~~~---------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~~~vv~-aSsGN~g~slA~~aa~~G~~~~ 124 (338)
T PRK06450 55 GEGRTPLIKKG---------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGIKQISE-DSSGNAGASIAAYGAAAGIEVK 124 (338)
T ss_pred CCCCCCceecC---------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCEEEE-ECCcHHHHHHHHHHHHcCCCEE
Confidence 44679999852 6999999999999999999888887888777655555 6999999999999999999999
Q ss_pred EEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHHH
Q psy11239 92 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI 170 (410)
||||++++ +.|+.+|+.|||+|+.++ ++++++.+. +++. +.+| .++|+|| .++|++|+++||
T Consensus 125 i~vP~~~~---~~k~~~i~~~GA~vi~v~-~~~~~~~~~----a~~~--g~~~-------~~~~~np~~ieG~kTia~EI 187 (338)
T PRK06450 125 IFVPETAS---GGKLKQIESYGAEVVRVR-GSREDVAKA----AENS--GYYY-------ASHVLQPQFRDGIRTLAYEI 187 (338)
T ss_pred EEEcCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHH----HHhc--CeEe-------ccCCCCccHHHHHHHHHHHH
Confidence 99999988 589999999999999998 788776554 2222 2233 2233333 479999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeeccccccccc
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCK 205 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~ 205 (410)
++|+. +..||+||+|+|+||++.|++.+|.++.
T Consensus 188 ~eql~--~~~pD~vvvpvG~Ggll~Gi~~g~~el~ 220 (338)
T PRK06450 188 AKDLD--WKIPNYVFIPVSAGTLLLGVYSGFKHLL 220 (338)
T ss_pred HHHcC--CCCCCEEEEECCchHHHHHHHHHHHHHH
Confidence 99964 3369999999999999999999987654
No 129
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=7.2e-34 Score=280.33 Aligned_cols=187 Identities=22% Similarity=0.215 Sum_probs=150.0
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 91 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 91 (410)
..++|||+++++|++.+ +.+||+|+|++|||||||||.+...+..+++.+... |+++||||||+|+|++|+.+|+||+
T Consensus 25 ~~G~TPl~~l~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~~-vV~aSsGN~G~alA~~aa~~G~~~~ 102 (352)
T PRK06721 25 MEGNTPLIPLLNISKQL-GIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGSEA-IICASTGNTSASAAAYAARLGMKCI 102 (352)
T ss_pred CcCCCCeeEchhhHHHh-CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCCE-EEEECCcHHHHHHHHHHHHCCCcEE
Confidence 46899999999999887 579999999999999999999888877777777654 5556999999999999999999999
Q ss_pred EEeccCC-ccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHH
Q psy11239 92 IYIGEND-YKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 170 (410)
Q Consensus 92 iv~p~~~-~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI 170 (410)
||||+.. + +.|+++|+.|||+|+.++ ++++++.+.+.+++++. .+++.+ . .||+ .++||+|+++||
T Consensus 103 vvvp~~~~~---~~k~~~~~~~GA~V~~~~-~~~~~~~~~a~~~~~~~---~~~~~~-~--~n~~---~~~G~~t~~~Ei 169 (352)
T PRK06721 103 IVIPEGKIA---HGKLAQAVAYGAEIISIE-GNFDDALKAVRNIAAEE---PITLVN-S--VNPY---RIEGQKTAAFEI 169 (352)
T ss_pred EEECCCCCC---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhC---Cceecc-C--CCch---hhhhhhhHHHHH
Confidence 9999974 4 479999999999999998 78888888888887654 223222 1 1332 468999999999
Q ss_pred HHhhhhcCCCccEEEEecCCCCceeecccccccccccccc-ccCceeEE
Q psy11239 171 HQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNI-LKGSKIFL 218 (410)
Q Consensus 171 ~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~-~~~~~v~~ 218 (410)
++|+. ..||+||+|+|+||+++|++.++.+. ++.. .+.++|+.
T Consensus 170 ~eq~~---~~~D~ivv~vG~GG~l~G~~~G~~~~--lk~~~~~~~~vig 213 (352)
T PRK06721 170 CDQLQ---RAPDVLAIPVGNAGNITAYWKGFCEY--EKEKGYKKPRIHG 213 (352)
T ss_pred HHHhC---CCCCEEEEeCCchHHHHHHHHHHHHH--HHhcCCCCCeEEE
Confidence 99964 25899999999999999976666432 2211 13577774
No 130
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=3.1e-33 Score=278.55 Aligned_cols=198 Identities=19% Similarity=0.170 Sum_probs=158.2
Q ss_pred ccccccccccccccccCceeEEeecCCCC-CchhhHHHHHHHHHHH--HHcC--------------------CCceEEec
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNF-TGAHKMNNSIAQSLLA--KFLK--------------------KKRIICET 253 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~p-tgS~K~R~a~~~~~~a--~~~g--------------------~~~~v~~~ 253 (410)
..|||++++.|++..+..+||+|+|++++ |||||+|++.+.+..+ .+.| ....|+++
T Consensus 40 ~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~a 119 (396)
T TIGR03528 40 QPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVTA 119 (396)
T ss_pred cCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEEE
Confidence 58999999999988843699999999885 9999999998888754 2222 01256679
Q ss_pred CchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCC
Q psy11239 254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTAS 333 (410)
Q Consensus 254 ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 333 (410)
|+||||+++|++|+++|++|+||||++.++ .|+..|+.+||+|+.++ ++++++.+.+.+..++. +.+ ++.+..
T Consensus 120 SsGN~g~alA~~aa~~Gi~~~IvvP~~~~~---~K~~~ir~~GAeVi~~~-~~~~~a~~~a~~~a~~~--g~~-~v~~~~ 192 (396)
T TIGR03528 120 TDGNHGRGVAWAANQLGQKSVVYMPKGSAQ---IRLENIRAEGAECTITD-LNYDDAVRLAWKMAQEN--GWV-MVQDTA 192 (396)
T ss_pred CccHHHHHHHHHHHHcCCCEEEEEeCCCcH---HHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc--CcE-eecccc
Confidence 999999999999999999999999986554 78999999999999995 45999999888887765 344 443222
Q ss_pred CCCCChh---HHHhhhhhHHHHHHHhhhhcC-CCCCEEEEccCchhHHHHHHHHHhcC----CCeEEEEccCCCCcC
Q psy11239 334 GPHPYPT---IVRDFQSIIGYEIHQQLNFNF-YNKKYILACVGGGSNALGIFYTFINS----NFKLVAIESGGISKK 402 (410)
Q Consensus 334 ~~~~~~~---~~~~g~~t~g~Ei~~q~~~~~-~~~d~iv~~vGtGg~~~Gi~~~~~~~----~~~vigVe~~g~~~~ 402 (410)
+ ++|++ .+++||+|++.||++|++..+ ..||+||+|+|+||+++|++.++++. .+|||+|||++++..
T Consensus 193 ~-~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l 268 (396)
T TIGR03528 193 W-EGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCL 268 (396)
T ss_pred c-cccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchH
Confidence 1 34532 267899999999999996322 36999999999999999998888532 469999999998754
No 131
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=7.4e-33 Score=274.12 Aligned_cols=197 Identities=20% Similarity=0.211 Sum_probs=158.5
Q ss_pred ccccccccccccccccCceeEEeecCCCC-CchhhHHHHHHHHHHHHHc-----------------------CCCceEEe
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNF-TGAHKMNNSIAQSLLAKFL-----------------------KKKRIICE 252 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~p-tgS~K~R~a~~~~~~a~~~-----------------------g~~~~v~~ 252 (410)
..|||++++.|...++..+||+|+|++|+ +||||+|++.+.+..+... +.. .|++
T Consensus 21 ~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vv~ 99 (376)
T TIGR01747 21 RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQA-TFAT 99 (376)
T ss_pred CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCC-EEEE
Confidence 58999999999888833699999999985 8999999998887655321 233 4566
Q ss_pred cCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCC
Q psy11239 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTA 332 (410)
Q Consensus 253 ~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~ 332 (410)
+|+||||+++|++|+.+|++|+||||++.+. .|+..|+.+||+|+.++ ++++++.+.+.+..++. +. |++.+.
T Consensus 100 aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~---~k~~~i~~~GAeVi~v~-~~~~~a~~~a~~~~~~~--g~-~~~~~~ 172 (376)
T TIGR01747 100 ATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQ---ERVENILNLGAECTITD-MNYDDTVRLAMQMAQQH--GW-VVVQDT 172 (376)
T ss_pred ECccHHHHHHHHHHHHcCCCEEEEECCCCCH---HHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc--Cc-EEeccc
Confidence 9999999999999999999999999986543 88999999999999995 55999988888877665 33 444321
Q ss_pred CCCCCChh---HHHhhhhhHHHHHHHhhhhc-CCCCCEEEEccCchhHHHHHHHHHhcC----CCeEEEEccCCCCcC
Q psy11239 333 SGPHPYPT---IVRDFQSIIGYEIHQQLNFN-FYNKKYILACVGGGSNALGIFYTFINS----NFKLVAIESGGISKK 402 (410)
Q Consensus 333 ~~~~~~~~---~~~~g~~t~g~Ei~~q~~~~-~~~~d~iv~~vGtGg~~~Gi~~~~~~~----~~~vigVe~~g~~~~ 402 (410)
.+ ++|++ .+.+||+|++.||++|++.. +..||+||+|+|+||+++|++.++++. .++||+|||++++..
T Consensus 173 ~~-~~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~ 249 (376)
T TIGR01747 173 AW-EGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCL 249 (376)
T ss_pred cc-cccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHH
Confidence 11 23322 26899999999999999621 247999999999999999999988653 479999999999864
No 132
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=1.4e-33 Score=277.78 Aligned_cols=179 Identities=22% Similarity=0.259 Sum_probs=143.3
Q ss_pred CCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEE
Q psy11239 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIY 93 (410)
Q Consensus 14 ~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv 93 (410)
+.|||+++ +.+||+|+|++|||||||||.+...+..+++.+.+.+++ +|+||||+|+|++|+.+|++|+||
T Consensus 63 g~Tpl~~~--------~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~v~ 133 (347)
T PRK08329 63 PITPTVKR--------SIKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGINEVVI-DSSGNAALSLALYSLSEGIKVHVF 133 (347)
T ss_pred CCCccccC--------CCeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCCEEEE-ECCCcHHHHHHHHHHHcCCcEEEE
Confidence 56999986 248999999999999999999888877787777755555 699999999999999999999999
Q ss_pred eccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHHHHHh
Q psy11239 94 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ 173 (410)
Q Consensus 94 ~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI~~q 173 (410)
||++++ +.|+.+|+.|||+|+.++ ++++++.+.+.+++++. +.+| +.+ +.||| .++|++|+++||++|
T Consensus 134 vp~~~~---~~k~~~~~~~GA~v~~v~-~~~~~~~~~a~~l~~~~--~~~~-~~~--~~np~---~~eG~~t~~~Ei~eq 201 (347)
T PRK08329 134 VSYNAS---KEKISLLSRLGAELHFVE-GDRMEVHEEAVKFSKRN--NIPY-VSH--WLNPY---FLEGTKTIAYEIYEQ 201 (347)
T ss_pred ECCCCh---HHHHHHHHHcCCEEEEEC-CCHHHHHHHHHHHHHhc--CCee-ccC--CCCch---hhccchhHHHHHHHH
Confidence 999887 589999999999999998 67788877777776653 2223 221 12444 468999999999999
Q ss_pred hhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeE
Q psy11239 174 LNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIF 217 (410)
Q Consensus 174 ~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~ 217 (410)
++ .||+||+|+|+||+++|+..+|.++..+..-.+..+++
T Consensus 202 l~----~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii 241 (347)
T PRK08329 202 IG----VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLV 241 (347)
T ss_pred cC----CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 64 59999999999999999999997754322111234666
No 133
>KOG1251|consensus
Probab=100.00 E-value=1.7e-33 Score=251.44 Aligned_cols=184 Identities=20% Similarity=0.288 Sum_probs=158.5
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHH-HcCCCceEEecCchHHHHHHHHHHHHcCCcEEEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLESIIY 276 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~-~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv 276 (410)
-||.+.+..+.+.. +.+||+|+|.+|.+|+||.|+|++.+..+. ++..+++|+ .||||||+|+|++|+.+|+|++||
T Consensus 25 kTpVlTS~~ln~~~-g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~kgvit-hSSGNHaqAlalaAk~~giPa~IV 102 (323)
T KOG1251|consen 25 KTPVLTSENLNEKV-GRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRAKGVIT-HSSGNHAQALALAAKILGIPATIV 102 (323)
T ss_pred cCceechhhHHHHh-hhheEeehhhhhhccceehhhhHHHHHHhhHhhhcCceEe-ecCCcHHHHHHHHHHhcCCCeEEE
Confidence 57777788887777 679999999999999999999999988766 666778877 999999999999999999999999
Q ss_pred EcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH-HHhhhhhHHHHHHH
Q psy11239 277 IGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQ 355 (410)
Q Consensus 277 ~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~g~Ei~~ 355 (410)
||.+.+. .|+..++.|||+|+++++. .+++-+.+.+..++. +.+.+ |||++. +++|++|++.|+++
T Consensus 103 vP~~AP~---~Kv~a~~~Yga~ii~~e~~-~~sRE~va~~ltee~--g~~~i-------~Py~~p~vIaGqgTiA~Elle 169 (323)
T KOG1251|consen 103 VPKDAPI---CKVAATRGYGANIIFCEPT-VESRESVAKDLTEET--GYYLI-------HPYNHPSVIAGQGTIALELLE 169 (323)
T ss_pred ecCCChH---HHHHHHHhcCceEEEecCc-cchHHHHHHHHHHhc--CcEEe-------CCCCCcceeeccchHHHHHHH
Confidence 9987665 8899999999999999643 445555666666765 34444 899877 89999999999999
Q ss_pred hhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCC
Q psy11239 356 QLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGIS 400 (410)
Q Consensus 356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~ 400 (410)
|.+ .+|++|+|+|+||+++|++...+. ++++|++|||++.+
T Consensus 170 qVg----~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~ 212 (323)
T KOG1251|consen 170 QVG----EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAAD 212 (323)
T ss_pred hhC----ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccc
Confidence 994 899999999999999999888875 49999999998765
No 134
>KOG1395|consensus
Probab=100.00 E-value=8.8e-34 Score=264.68 Aligned_cols=201 Identities=47% Similarity=0.783 Sum_probs=183.5
Q ss_pred hhhhhhhcCCCCCCCcCccccccccccC-CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHH
Q psy11239 2 EWFDLFYNPKKGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTA 80 (410)
Q Consensus 2 ~~~~~~~~~~~~~~TPl~~~~~l~~~~~-~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A 80 (410)
|+|.+|+. +++|||||++.++|.+.++ +.+||+|+|++||+||+|..+++.+++++++++++.+|+++++|.||.|+|
T Consensus 110 ee~~eiy~-y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA 188 (477)
T KOG1395|consen 110 EEFLEIYK-YLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATA 188 (477)
T ss_pred HHHHHHHH-HcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHH
Confidence 66777776 8999999999999999987 899999999999999999999999999999999999999988899999999
Q ss_pred HHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhcccCCcccccccccCcccccc
Q psy11239 81 TSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI 158 (410)
Q Consensus 81 ~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 158 (410)
.+|++||+.|+|+|-..+-++++-|.-+||.+||+|+.|++|. +.++..++.+.|..+...++|.+++..++|||...
T Consensus 189 ~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~ 268 (477)
T KOG1395|consen 189 TACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTV 268 (477)
T ss_pred HHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHH
Confidence 9999999999999998888888899999999999999999875 88999999999998877889999999999999866
Q ss_pred ccccchhHHHHHHH-hhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 159 VRDFQSIIGYEIHQ-QLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 159 ~~~g~~ti~~EI~~-q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
+..-+.+|+-|--. |++..+..||.||.|+|+|++..|+..||++
T Consensus 269 vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~ 314 (477)
T KOG1395|consen 269 VRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR 314 (477)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc
Confidence 67788899887543 4555667899999999999999999999986
No 135
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=1.5e-32 Score=267.21 Aligned_cols=195 Identities=22% Similarity=0.177 Sum_probs=152.1
Q ss_pred eeccccccccccccccccCceeEEeecCCCCC--chhhHHHHHHHHHHHHHcCCCceEEec--CchHHHHHHHHHHHHcC
Q psy11239 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCLLN 270 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt--gS~K~R~a~~~~~~a~~~g~~~~v~~~--ssGN~g~a~A~~a~~~G 270 (410)
.+..|||++++.++... +.+||+|+|++||+ ||||+|++.+++..++++|.+.+|+ + |+||||+|+|++|+++|
T Consensus 4 ~~~~TPl~~~~~l~~~~-g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~vv~-~g~ssGN~g~alA~~a~~~G 81 (311)
T TIGR01275 4 IPWPTPIQYLPRISREI-GAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADTVIT-VGAIQSNHARATALAAKKLG 81 (311)
T ss_pred CCCCCcceechhhhhhc-CCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCEEEE-cCCchhHHHHHHHHHHHHhC
Confidence 45799999999888776 68999999999998 9999999999999999888877665 6 56999999999999999
Q ss_pred CcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH---ccCCCceEEecCCCCCCCChhHHHhhhh
Q psy11239 271 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWS---NNILNSHYLIGTASGPHPYPTIVRDFQS 347 (410)
Q Consensus 271 ~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (410)
++|++|||+.... ..+..+++.+||+|+.++.+++++..+.+.+..+ +.++..+++..++. +++ -..|+.
T Consensus 82 ~~~~ivvp~~~~~--~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~---~~~g~~ 154 (311)
T TIGR01275 82 LDAVLVLREKEEL--NGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGGS--NSL---GTLGYV 154 (311)
T ss_pred CceEEEecCCccC--CCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCCC--cHH---HHHHHH
Confidence 9999999975333 3567778999999999875445544444444332 23112333434433 332 245666
Q ss_pred hHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCC
Q psy11239 348 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGI 399 (410)
Q Consensus 348 t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~ 399 (410)
+++.||++|++. ...||+||+|+|||||++|++.+|++. +++||||||+.+
T Consensus 155 ~~~~EI~~q~~~-~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~ 207 (311)
T TIGR01275 155 EAVLEIATQLES-EVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRF 207 (311)
T ss_pred HHHHHHHHHHhc-CCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 799999999951 136999999999999999999999864 889999998765
No 136
>KOG1251|consensus
Probab=100.00 E-value=2.3e-33 Score=250.70 Aligned_cols=182 Identities=20% Similarity=0.258 Sum_probs=151.4
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHH-HhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK-FLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~-~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
....||.+.+.+|.+.. +.+||+|||.+|.+||||.|+++..+...+ +++++++|+ .||||||+|+|++|+.+|+||
T Consensus 22 ~ihkTpVlTS~~ln~~~-g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~kgvit-hSSGNHaqAlalaAk~~giPa 99 (323)
T KOG1251|consen 22 FIHKTPVLTSENLNEKV-GRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRAKGVIT-HSSGNHAQALALAAKILGIPA 99 (323)
T ss_pred hhccCceechhhHHHHh-hhheEeehhhhhhccceehhhhHHHHHHhhHhhhcCceEe-ecCCcHHHHHHHHHHhcCCCe
Confidence 55799999999999887 789999999999999999999987776666 555666666 699999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccchhHHHH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~E 169 (410)
+||||+++|. -|...++.|||+|+.+++ +-+++-+.+.++.++. +..-.+||++| +++||+|++.|
T Consensus 100 ~IVvP~~AP~---~Kv~a~~~Yga~ii~~e~-~~~sRE~va~~ltee~---------g~~~i~Py~~p~vIaGqgTiA~E 166 (323)
T KOG1251|consen 100 TIVVPKDAPI---CKVAATRGYGANIIFCEP-TVESRESVAKDLTEET---------GYYLIHPYNHPSVIAGQGTIALE 166 (323)
T ss_pred EEEecCCChH---HHHHHHHhcCceEEEecC-ccchHHHHHHHHHHhc---------CcEEeCCCCCcceeeccchHHHH
Confidence 9999999995 899999999999999984 3334444566666654 22457999999 69999999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
+++|.+ ..|.+|+|+|+||+++|+..-. ..|+ |+++||.
T Consensus 167 lleqVg----~iDalfvpvgGGGllSgvAlaa---~~l~---P~i~vy~ 205 (323)
T KOG1251|consen 167 LLEQVG----EIDALFVPVGGGGLLSGVALAA---KSLK---PSIEVYA 205 (323)
T ss_pred HHHhhC----ccceEEEeecCcchhhHHHHHH---hccC---CCcEEEE
Confidence 999964 5799999999999999984322 2333 5789995
No 137
>KOG1252|consensus
Probab=100.00 E-value=2.3e-33 Score=262.40 Aligned_cols=195 Identities=20% Similarity=0.180 Sum_probs=167.2
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC----CceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK----KRIICETGAGMHGVSTATSCCLLNLES 273 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~----~~~v~~~ssGN~g~a~A~~a~~~G~~~ 273 (410)
.||++.+.+..... .++|++|+|.+||+||.|||-++.|+..|++.|. +.+++|+||||+|.++|++|+..|++|
T Consensus 52 ~TPlv~ln~i~~g~-~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~ 130 (362)
T KOG1252|consen 52 NTPLVKLNKIAGGC-VARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKC 130 (362)
T ss_pred CCceEEeccccCCc-cceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCceE
Confidence 79999988885443 7999999999999999999999999999999886 478899999999999999999999999
Q ss_pred EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHH---HHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhH
Q psy11239 274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKE---AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSII 349 (410)
Q Consensus 274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 349 (410)
+++||+... +.++..+++|||+|+.+|... ++. ++..+.++..+. ...|+..++.||. . ...||.|+
T Consensus 131 i~tmP~~ms---~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~--pna~~l~Qf~np~-N---p~~hy~tt 201 (362)
T KOG1252|consen 131 IITMPEKMS---KEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKT--PNAYILDQFHNPG-N---PLAHYETT 201 (362)
T ss_pred EEEechhhh---HHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhC--CChHHHHHhcCCC-C---cccccccc
Confidence 999998644 478899999999999997433 333 778888877776 3455666666532 1 35899999
Q ss_pred HHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcCCcc
Q psy11239 350 GYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKKRTA 405 (410)
Q Consensus 350 g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~~~~ 405 (410)
|.||++|+. ..+|.+|.++|||||++|+.+++++. +++|++|||.+|.+.++.
T Consensus 202 g~EI~~q~~---g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~ 256 (362)
T KOG1252|consen 202 GPEIWRQLD---GKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGG 256 (362)
T ss_pred cHHHHHHhc---CCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCC
Confidence 999999995 78999999999999999999999875 999999999999987654
No 138
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=2.8e-32 Score=264.81 Aligned_cols=198 Identities=21% Similarity=0.205 Sum_probs=154.9
Q ss_pred cccccccccccccc-CceeEEeecCCCCC---chhhHHHHHHHHHHHHHcCCCceEEec--CchHHHHHHHHHHHHcCCc
Q psy11239 199 TPIYYCKNISNILK-GSKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCLLNLE 272 (410)
Q Consensus 199 tpl~~~~~L~~~~~-~~~v~~K~e~~~pt---gS~K~R~a~~~~~~a~~~g~~~~v~~~--ssGN~g~a~A~~a~~~G~~ 272 (410)
|||+++++|...++ +.+||+|+|++||+ ||||+|++..++..+.+.|.+.+|+ + |+||||+|+|++|+.+|++
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~vv~-~ggs~GN~g~alA~~a~~~G~~ 79 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADTLVT-VGGIQSNHTRQVAAVAAKLGLK 79 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCEEEE-CCCchhHHHHHHHHHHHHcCCe
Confidence 79999998887664 47999999999999 5679999999999998888877665 6 6899999999999999999
Q ss_pred EEEEEcCCCcc-----chhhhHHHHHHCCCEEEEEeCCC---HHHHHHHHHHHHHccCCCceEEe-cCCCCCCCChhHHH
Q psy11239 273 SIIYIGENDYK-----RQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLI-GTASGPHPYPTIVR 343 (410)
Q Consensus 273 ~~vv~p~~~~~-----~~~~~~~~~~~~Ga~v~~v~~g~---~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 343 (410)
|++|||+..+. ....|+.+++.+||+|+.++... .+++..++.+...++. +..|++ ++... +++ ..
T Consensus 80 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~---~~ 154 (307)
T cd06449 80 CVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKG-GKPYVIPAGGSE-HPL---GG 154 (307)
T ss_pred EEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcC-CceEEecCCCCC-Ccc---cH
Confidence 99999976442 11367889999999999996432 2334444455444432 233443 33221 333 35
Q ss_pred hhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 344 DFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 344 ~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
.|+.|++.||++|++..+..||+||+|+|||||++|++.+|++. ++|||+|||+++...
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~ 215 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEK 215 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHH
Confidence 68999999999999744557999999999999999999999864 899999999998654
No 139
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=5.3e-33 Score=276.93 Aligned_cols=186 Identities=19% Similarity=0.162 Sum_probs=145.4
Q ss_pred hcCCCCCCCcCccccccccccCCceEEEeeCCCCC-CCchhhhHHHHHHHHH--HHh-----------------c---CC
Q psy11239 8 YNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNF-TGAHKMNNSIAQSLLA--KFL-----------------K---KK 64 (410)
Q Consensus 8 ~~~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~np-tGS~K~R~~~~~~~~~--~~~-----------------~---~~ 64 (410)
.....+.+|||+++++|++.+|..+||+|+|++|+ |||||+|++...+... ++. . ..
T Consensus 34 ~~~~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 113 (396)
T TIGR03528 34 QSFPGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGD 113 (396)
T ss_pred hcCCCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccC
Confidence 44456689999999999998854799999999885 9999999876554432 111 1 11
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcc
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHY 144 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~ 144 (410)
..|+++|+||||+++|++|+.+|+||+||||++++ +.|+..|+.|||+|+.++ ++++++.+.+.+++++. .++
T Consensus 114 ~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~---~~K~~~ir~~GAeVi~~~-~~~~~a~~~a~~~a~~~---g~~ 186 (396)
T TIGR03528 114 ITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSA---QIRLENIRAEGAECTITD-LNYDDAVRLAWKMAQEN---GWV 186 (396)
T ss_pred cEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCc---HHHHHHHHhcCCEEEEEC-CCHHHHHHHHHHHHHhc---CcE
Confidence 25666799999999999999999999999999987 589999999999999998 68999999988887653 233
Q ss_pred cccccccCccccc--c-ccccchhHHHHHHHhhhhcC-CCccEEEEecCCCCceeeccccc
Q psy11239 145 LIGTASGPHPYPT--I-VRDFQSIIGYEIHQQLNFNF-YNKKYILACVGGGSNALGRPTPI 201 (410)
Q Consensus 145 ~~~~~~~~~p~~~--~-~~~g~~ti~~EI~~q~~~~~-~~~d~iv~~vG~Gg~~~G~~tpl 201 (410)
++.+. ..+||++ + .++||+|+++||++|++..+ ..||+||+|+|+||++.|+...+
T Consensus 187 ~v~~~-~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~ 246 (396)
T TIGR03528 187 MVQDT-AWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYF 246 (396)
T ss_pred eeccc-cccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHH
Confidence 33221 1145654 2 46899999999999975322 25999999999999998885544
No 140
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=3.8e-33 Score=285.25 Aligned_cols=177 Identities=18% Similarity=0.107 Sum_probs=141.8
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL 88 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~ 88 (410)
...+|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..+.+.+. +.+|+++||||||+|+|++|+.+|+
T Consensus 8 ~~~~TPl~~~~~l~~~~-~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~ 86 (454)
T TIGR01137 8 LIGNTPLVRLNKVSKGI-KCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKGY 86 (454)
T ss_pred hcCCCceEEccccCCCC-CceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence 45799999999999876 6799999999999999999988777667766654 3467777999999999999999999
Q ss_pred cEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC-HHH---HHHHHHHHHhhcccCCcccccccccCccccccc--ccc
Q psy11239 89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKE---AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDF 162 (410)
Q Consensus 89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g 162 (410)
+|+||||+.++ +.|+.+|+.|||+|+.++... +++ .++.+.++.++. .+ .| +++||+++. ..|
T Consensus 87 ~~~iv~p~~~~---~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~-~~-~~------~~~~~~~~~~~~~~ 155 (454)
T TIGR01137 87 KCIIVLPEKMS---NEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREI-PG-AH------ILDQYNNPSNPLAH 155 (454)
T ss_pred eEEEEeCCCcC---HHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhC-CC-cE------ecccCCChhhHHHH
Confidence 99999999887 589999999999999997321 332 244555555442 12 22 245665552 368
Q ss_pred chhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 163 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 163 ~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
|+|+|+||++|++ + .||+||+|+||||+++|+...|.+
T Consensus 156 ~~t~~~Ei~~q~~--~-~~d~vv~~vG~Gg~~~G~~~~~~~ 193 (454)
T TIGR01137 156 YDGTGPEILEQCE--G-KLDMFVAGAGTGGTITGIARYLKE 193 (454)
T ss_pred HHhhHHHHHHHhC--C-CCCEEEEecCchHHHHHHHHHHHh
Confidence 9999999999964 2 499999999999999999877754
No 141
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.3e-32 Score=269.81 Aligned_cols=190 Identities=15% Similarity=0.136 Sum_probs=158.4
Q ss_pred ccccccccccccccccCc-eeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~-~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
..||+++++++.... +. +||+|+|++|||||||||++.+++..+.+.+...+| ++|+||||+|+|++|+.+|++|+|
T Consensus 22 g~TPl~~~~~l~~~~-g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~~vv-~aSsGN~g~a~A~~a~~~g~~~~v 99 (328)
T TIGR00260 22 GVTPLFRSPALVANV-GIKNLYVLELFHNPTLSFKDRGMAVALTKALELGNDTVL-CASTGNTGAAAAAYAGKAGVKVVI 99 (328)
T ss_pred CCccCccchHHHHhc-CCccEEehhhccCCchhhHhhhHHHHHHHHHHcCCCEEE-EeCCcHHHHHHHHHhccCCCcEEE
Confidence 489999999888776 45 999999999999999999999999888888876655 599999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ 355 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~ 355 (410)
|||+...+ +.|+..++.+||+|+.++ ++++++.+.+.+..++. . .|..+ ..|.+|+ ...||.|+++||++
T Consensus 100 ~~p~~~~s--~~k~~~~~~~GA~Vi~~~-~~~~~~~~~~~~~~~~~--~-~~~~~-~~n~~~~---~~~g~~t~~~Ei~~ 169 (328)
T TIGR00260 100 LYPAGKIS--LGKLAQALGYNAEVVAID-GNFDDAQRLVKQLFGDK--E-ALGLN-SVNSIPY---RLEGQKTYAFEAVE 169 (328)
T ss_pred EECCCCCC--HHHHHHHHhcCcEEEEec-CCHHHHHHHHHHHHhhc--C-eeecc-cCCCCCe---EeeeehhHHHHHHH
Confidence 99986234 488999999999999996 56888888888877654 2 33332 2221244 36788999999999
Q ss_pred hhhhcCCCCCEEEEccCchhHHHHHHHHHhcC-------CCeEEEEccCCCC
Q psy11239 356 QLNFNFYNKKYILACVGGGSNALGIFYTFINS-------NFKLVAIESGGIS 400 (410)
Q Consensus 356 q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-------~~~vigVe~~g~~ 400 (410)
|++ +..||+||+|+|+||+++|++.+|++. .++|++|||++++
T Consensus 170 q~~--~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~ 219 (328)
T TIGR00260 170 QLG--WEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAA 219 (328)
T ss_pred HhC--CCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCC
Confidence 995 236999999999999999999999862 5699999999984
No 142
>KOG1395|consensus
Probab=100.00 E-value=5.4e-33 Score=259.43 Aligned_cols=213 Identities=46% Similarity=0.779 Sum_probs=196.2
Q ss_pred eecccccccccccccccc-CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239 195 LGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES 273 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~~~-~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 273 (410)
.|.++||++.++|.++.. +.+||+|+|++||+||+|..++..++++++++|++.+|+|.++|.||.|+|.+|+++|++|
T Consensus 119 ~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C 198 (477)
T KOG1395|consen 119 LGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDC 198 (477)
T ss_pred cCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCce
Confidence 478999999999998876 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHH
Q psy11239 274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGY 351 (410)
Q Consensus 274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~ 351 (410)
+|+|-..+..+|..|+.+||.+||+|+.+++|. ++++..++.+.+..+-+..+|++++..+||||+..+...++++|.
T Consensus 199 ~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~ 278 (477)
T KOG1395|consen 199 TVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGK 278 (477)
T ss_pred EEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhH
Confidence 999998888999999999999999999999887 999999999999888666799999999999999988888999999
Q ss_pred HHHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCCCcCCccCC
Q psy11239 352 EIHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGISKKRTASR 407 (410)
Q Consensus 352 Ei~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~~~~~~~~~ 407 (410)
|-..|.. ..+..||+||.|+|+|++.+|++.-|.+. .+++||||..+-.+..+++.
T Consensus 279 Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~dk~v~~igveaagdg~dtp~hs 336 (477)
T KOG1395|consen 279 ETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRDKSVGMIGVEAAGDGVDTPKHS 336 (477)
T ss_pred HHHHHHHHHhCCCCCeEEEeccCCCccccccchhhccchhheeeeeecccccCCcchh
Confidence 9887766 45789999999999999999999888866 89999999998887766543
No 143
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=1.2e-32 Score=272.71 Aligned_cols=184 Identities=20% Similarity=0.178 Sum_probs=144.5
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCC-CCchhhhHHHHHHHHHHHh-------------------c---CCceEE
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNF-TGAHKMNNSIAQSLLAKFL-------------------K---KKRIIC 68 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~np-tGS~K~R~~~~~~~~~~~~-------------------~---~~~~v~ 68 (410)
-+.+|||+++++|++.+|..+||+|+|++|+ +||||+|++...+...... . ....|+
T Consensus 19 ~~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 98 (376)
T TIGR01747 19 GYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFA 98 (376)
T ss_pred CCCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEE
Confidence 4489999999999998854799999999985 8999999775544433221 1 023555
Q ss_pred EeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccc
Q psy11239 69 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGT 148 (410)
Q Consensus 69 ~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (410)
++|+||||+|+|++|+.+|+||+||||++++ +.|+.+|+.|||+|+.++ ++++++.+.+.++.++. .+|+...
T Consensus 99 ~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~---~~k~~~i~~~GAeVi~v~-~~~~~a~~~a~~~~~~~---g~~~~~~ 171 (376)
T TIGR01747 99 TATDGNHGRGVAWAAQQLGQKAVVYMPKGSA---QERVENILNLGAECTITD-MNYDDTVRLAMQMAQQH---GWVVVQD 171 (376)
T ss_pred EECccHHHHHHHHHHHHcCCCEEEEECCCCC---HHHHHHHHhCCCEEEEEC-CCHHHHHHHHHHHHHhc---CcEEecc
Confidence 5799999999999999999999999999988 589999999999999998 78999988888877653 2343321
Q ss_pred cccCccccc--c-ccccchhHHHHHHHhhhh-cCCCccEEEEecCCCCceeeccccccc
Q psy11239 149 ASGPHPYPT--I-VRDFQSIIGYEIHQQLNF-NFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 149 ~~~~~p~~~--~-~~~g~~ti~~EI~~q~~~-~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
+..+||++ | .++||+|+++||++|+.. .+..||+||+|+|+||+++|+...+.+
T Consensus 172 -~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~ 229 (376)
T TIGR01747 172 -TAWEGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVD 229 (376)
T ss_pred -ccccccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHH
Confidence 11134543 3 479999999999999742 123699999999999999999766543
No 144
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.2e-31 Score=263.47 Aligned_cols=200 Identities=21% Similarity=0.236 Sum_probs=159.7
Q ss_pred cccccccccccccccC-ceeEEeecCCCCC---chhhHHHHHHHHHHHHHcCCCceEEec--CchHHHHHHHHHHHHcCC
Q psy11239 198 PTPIYYCKNISNILKG-SKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCLLNL 271 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~-~~v~~K~e~~~pt---gS~K~R~a~~~~~~a~~~g~~~~v~~~--ssGN~g~a~A~~a~~~G~ 271 (410)
.|||++++++....+. .+||+|+|++||+ ||||+|++..++..+.+.|...+++ + |+||||+|+|++|+++|+
T Consensus 15 ~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs-~G~s~GN~g~alA~aa~~~G~ 93 (337)
T PRK12390 15 PTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTLVS-IGGVQSNHTRQVAAVAAHLGM 93 (337)
T ss_pred CCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCCEEEE-eCCCccHHHHHHHHHHHHcCC
Confidence 8999999988877633 7999999999987 7889999999999999999977665 5 889999999999999999
Q ss_pred cEEEEEcCCCcc-----chhhhHHHHHHCCCEEEEEeCC---CHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHH
Q psy11239 272 ESIIYIGENDYK-----RQNINVKKIKLLGGTVYLVQYG---NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVR 343 (410)
Q Consensus 272 ~~~vv~p~~~~~-----~~~~~~~~~~~~Ga~v~~v~~g---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (410)
+|++|||+..+. .+..|+.+++.+||+|+.++.+ .++++..++.+.+++.. +..|.+.....+|++ ..
T Consensus 94 ~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~ 169 (337)
T PRK12390 94 KCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAG-GKPYAIPAGASDHPL---GG 169 (337)
T ss_pred eEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCC-CceEEeCCcCCCCCc---cc
Confidence 999998754321 1235788999999999999643 14467777777766642 345644332222444 24
Q ss_pred hhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 344 DFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 344 ~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
.|+.+++.||++|+++.+..||+||+|+|||||++|++.+|++. ++|||||||+++...
T Consensus 170 ~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~ 230 (337)
T PRK12390 170 LGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQ 230 (337)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHH
Confidence 68888899999997644557999999999999999999999875 799999999988654
No 145
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=1.3e-31 Score=262.55 Aligned_cols=196 Identities=20% Similarity=0.209 Sum_probs=153.5
Q ss_pred ccccccccccccccccCceeEEeecCCCCC--chhhHHHHHHHHHHHHHcCCCceEEecC--chHHHHHHHHHHHHcCCc
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIICETG--AGMHGVSTATSCCLLNLE 272 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt--gS~K~R~a~~~~~~a~~~g~~~~v~~~s--sGN~g~a~A~~a~~~G~~ 272 (410)
..|||++++.|++.. +.+||+|+|++||+ ||||+|++.+++..+++.|.+++|+ +| +||||.|+|++|+.+|++
T Consensus 14 ~~TPl~~~~~l~~~~-g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~vvt-~g~s~gN~g~alA~~a~~~G~~ 91 (331)
T PRK03910 14 LPTPLEPLPRLSAAL-GPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTLIT-AGAIQSNHARQTAAAAAKLGLK 91 (331)
T ss_pred CCCCceEhhhhhHhh-CCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEEEE-cCcchhHHHHHHHHHHHHhCCc
Confidence 489999999888766 67999999999997 5999999999999998888887765 54 589999999999999999
Q ss_pred EEEEEcCCCccch-----hhhHHHHHHCCCEEEEEeCCC-HHHH-HHHHHHHHHccCCCceEEe-cCCCCCCCChhHHHh
Q psy11239 273 SIIYIGENDYKRQ-----NINVKKIKLLGGTVYLVQYGN-LKEA-MNEAIKDWSNNILNSHYLI-GTASGPHPYPTIVRD 344 (410)
Q Consensus 273 ~~vv~p~~~~~~~-----~~~~~~~~~~Ga~v~~v~~g~-~~~~-~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 344 (410)
|+||||+..++.+ +.|+..++.+||+|+.++..+ ..+. ...+.++.++. +..|+. .++. +++ ...
T Consensus 92 ~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~--~~~~~~~~~~~--~~~---~~~ 164 (331)
T PRK03910 92 CVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQG--RRPYVIPVGGS--NAL---GAL 164 (331)
T ss_pred EEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcC--CceEEECCCCC--Cch---hHH
Confidence 9999998655322 267789999999999997543 3333 33343433332 234443 3332 333 345
Q ss_pred hhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCc
Q psy11239 345 FQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISK 401 (410)
Q Consensus 345 g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~ 401 (410)
|+.+++.||++|++..+..||+||+|+|||||++|++.+|++. +++||||||+++..
T Consensus 165 g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~ 223 (331)
T PRK03910 165 GYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAA 223 (331)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHH
Confidence 7789999999999732347999999999999999999999864 89999999998754
No 146
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.4e-32 Score=269.55 Aligned_cols=179 Identities=13% Similarity=0.061 Sum_probs=146.0
Q ss_pred CCCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 11 KKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 11 ~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
...++|||+++++|...++..+||+|+|++|||||||||.+...+..+.+.+.. .|+++||||||+|+|++|+.+|++|
T Consensus 19 l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~-~vv~aSsGN~g~a~A~~a~~~g~~~ 97 (328)
T TIGR00260 19 LGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGND-TVLCASTGNTGAAAAAYAGKAGVKV 97 (328)
T ss_pred hccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHhccCCCcE
Confidence 355899999999998887434999999999999999999877666666666655 4555799999999999999999999
Q ss_pred EEEeccC-CccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHH
Q psy11239 91 IIYIGEN-DYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~-~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~E 169 (410)
+||||+. ++ +.|+.+++.|||+|+.++ ++++++.+.+.+.+++. ..|..+. .+..|+ .+.||.|+++|
T Consensus 98 ~v~~p~~~~s---~~k~~~~~~~GA~Vi~~~-~~~~~~~~~~~~~~~~~---~~~~~~~-~n~~~~---~~~g~~t~~~E 166 (328)
T TIGR00260 98 VILYPAGKIS---LGKLAQALGYNAEVVAID-GNFDDAQRLVKQLFGDK---EALGLNS-VNSIPY---RLEGQKTYAFE 166 (328)
T ss_pred EEEECCCCCC---HHHHHHHHhcCcEEEEec-CCHHHHHHHHHHHHhhc---Ceeeccc-CCCCCe---EeeeehhHHHH
Confidence 9999997 66 589999999999999998 78999988888877653 1332221 111133 46899999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
|++|++. ..||+||+|+|+||+++|+...|.+
T Consensus 167 i~~q~~~--~~~d~iv~~vG~GG~~~G~~~~~~~ 198 (328)
T TIGR00260 167 AVEQLGW--EAPDKVVVPVPNSGNFGAILKGFKE 198 (328)
T ss_pred HHHHhCC--CCCCEEEEECCCcchHHHHHHHHHH
Confidence 9999642 3589999999999999999888865
No 147
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.98 E-value=1.8e-31 Score=262.10 Aligned_cols=202 Identities=17% Similarity=0.191 Sum_probs=159.0
Q ss_pred cccccccccccccccc-CceeEEeecCCCCC---chhhHHHHHHHHHHHHHcCCCceEEe-cCchHHHHHHHHHHHHcCC
Q psy11239 197 RPTPIYYCKNISNILK-GSKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICE-TGAGMHGVSTATSCCLLNL 271 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~-~~~v~~K~e~~~pt---gS~K~R~a~~~~~~a~~~g~~~~v~~-~ssGN~g~a~A~~a~~~G~ 271 (410)
.+|||++++++++.++ +.+||+|+|++||+ ||||+|++..++..++++|...+++. .|+||||+++|++|+++|+
T Consensus 13 g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl 92 (337)
T TIGR01274 13 GPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGM 92 (337)
T ss_pred CCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCC
Confidence 3899999999988774 25999999999986 77899999999999999999876652 2679999999999999999
Q ss_pred cEEEEEcCCCc-c----chhhhHHHHHHCCCEEEEEeCCC---HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHH
Q psy11239 272 ESIIYIGENDY-K----RQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVR 343 (410)
Q Consensus 272 ~~~vv~p~~~~-~----~~~~~~~~~~~~Ga~v~~v~~g~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (410)
+|+||||+..+ + .++.|+.+|+.+||+|+.++... ..++..++.+.+++.+ +..|++.....+|++. .
T Consensus 93 ~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~-~~~~~i~~~~~~~~~~---~ 168 (337)
T TIGR01274 93 KCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAG-GKPYPIPAGCSDHPLG---G 168 (337)
T ss_pred cEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcC-CceEEeCCCCCCCccc---h
Confidence 99999997432 1 12478999999999999986321 2356666666666552 2334443332234553 4
Q ss_pred hhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCcC
Q psy11239 344 DFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISKK 402 (410)
Q Consensus 344 ~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~~ 402 (410)
.|+.+++.||++|+.+.+..||+||+|+|||||++|++.+++.. ++|||||||+++...
T Consensus 169 ~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~ 229 (337)
T TIGR01274 169 LGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQ 229 (337)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHH
Confidence 67888899999998644557999999999999999999999865 899999999998654
No 148
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=99.97 E-value=2.4e-31 Score=258.90 Aligned_cols=183 Identities=21% Similarity=0.147 Sum_probs=135.9
Q ss_pred CCCCCCcCccccccccccCCceEEEeeCCCCCC--CchhhhHHHHHHHHHHHhcCCceEEEe--CccHHHHHHHHHHHHc
Q psy11239 11 KKGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCLL 86 (410)
Q Consensus 11 ~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~npt--GS~K~R~~~~~~~~~~~~~~~~~v~~~--ssGN~g~a~A~~a~~~ 86 (410)
+..++|||+++++|++.. +.+||+|+|++||+ ||||||.+......+++.+...+| ++ |+||||+|+|++|+.+
T Consensus 3 ~~~~~TPl~~~~~l~~~~-g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~vv-~~g~ssGN~g~alA~~a~~~ 80 (311)
T TIGR01275 3 LIPWPTPIQYLPRISREI-GAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADTVI-TVGAIQSNHARATALAAKKL 80 (311)
T ss_pred CCCCCCcceechhhhhhc-CCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCEEE-EcCCchhHHHHHHHHHHHHh
Confidence 466899999999998876 58999999999998 999999876665556655554444 45 4599999999999999
Q ss_pred CCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhh---cccCCcccccccccCccccccccccc
Q psy11239 87 NLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSN---NILNSHYLIGTASGPHPYPTIVRDFQ 163 (410)
Q Consensus 87 G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~g~ 163 (410)
|++|+||||+..+. ..|..+++.|||+|+.++.+++++..+.+.+..++ .....++++.+. .||+ ...|+
T Consensus 81 G~~~~ivvp~~~~~--~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~---~~~g~ 153 (311)
T TIGR01275 81 GLDAVLVLREKEEL--NGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGG--SNSL---GTLGY 153 (311)
T ss_pred CCceEEEecCCccC--CCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCC--CcHH---HHHHH
Confidence 99999999996432 36788899999999999844555554544444332 211122322322 2332 25677
Q ss_pred hhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccc
Q psy11239 164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYY 203 (410)
Q Consensus 164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~ 203 (410)
.++++||++|++. +..||+||+|+|||||++|+.+.|..
T Consensus 154 ~~~~~EI~~q~~~-~~~~D~vv~~vGtGgt~~Gi~~~lk~ 192 (311)
T TIGR01275 154 VEAVLEIATQLES-EVKFDSIVVAAGSGGTIAGLSLGLSI 192 (311)
T ss_pred HHHHHHHHHHHhc-CCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 7899999999752 22589999999999999999776643
No 149
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.97 E-value=2.2e-30 Score=253.57 Aligned_cols=192 Identities=21% Similarity=0.234 Sum_probs=149.0
Q ss_pred ccccccccccccccccCceeEEeecCCCCC--chhhHHHHHHHHHHHHHcCCCceEE-ecCchHHHHHHHHHHHHcCCcE
Q psy11239 197 RPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIIC-ETGAGMHGVSTATSCCLLNLES 273 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt--gS~K~R~a~~~~~~a~~~g~~~~v~-~~ssGN~g~a~A~~a~~~G~~~ 273 (410)
..||++++++++... +++||+|+|++||+ ||||+|++..++..+.+.|.+.+++ ++|+||||+|+|++|+++|++|
T Consensus 20 ~~TPl~~~~~l~~~~-g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~~ 98 (329)
T PRK14045 20 WETPIQYLPNISREL-GADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKLGLDA 98 (329)
T ss_pred CCCCcccchhhHHHh-CCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCeE
Confidence 389999998888766 58999999999986 8999999999998888888887764 7999999999999999999999
Q ss_pred EEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC----HHHHHHHHHHHHHccCCCceEE-ecCCCCCCCChhHHHhhhhh
Q psy11239 274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN----LKEAMNEAIKDWSNNILNSHYL-IGTASGPHPYPTIVRDFQSI 348 (410)
Q Consensus 274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~----~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~t 348 (410)
++|||...+. +.+...++.+||+++.++.+. .+.+.+.+.++.++. +..|+ ..++. +|+. ...++.+
T Consensus 99 ~ivvp~~~~~--~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~p~~~~--n~~~--~~g~~~~ 170 (329)
T PRK14045 99 VLVLRGKEEL--KGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEG--RKPYIIPPGGA--SPVG--TLGYVRA 170 (329)
T ss_pred EEEEeCCCCC--CcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcC--CCEEEECCCCC--chhH--HHHHHHH
Confidence 9999965333 356677899999999886422 334444444444333 23444 34433 3322 3334444
Q ss_pred HHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCC
Q psy11239 349 IGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGG 398 (410)
Q Consensus 349 ~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g 398 (410)
++ ||++|+++.+..+|+||+|+|||||++|++.+++. +++|||||+|.+
T Consensus 171 ~~-EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 171 VG-EIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred HH-HHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 44 99999974445799999999999999999999985 489999999976
No 150
>KOG1481|consensus
Probab=99.97 E-value=6.4e-31 Score=238.97 Aligned_cols=207 Identities=22% Similarity=0.221 Sum_probs=158.8
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcC---CceEEEeCccHHHHHHHHHHHHcCC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNL 88 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~---~~~v~~~ssGN~g~a~A~~a~~~G~ 88 (410)
.+++|||+++++|++.- +++|+.|+|++||.||-|||.++..+..+++.++ +++|++.|+||+|+++|..|+.+|+
T Consensus 46 ~IGnTpliri~sLs~aT-GcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIslA~v~~a~Gy 124 (391)
T KOG1481|consen 46 AIGNTPLIRINSLSNAT-GCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGISLAHVARALGY 124 (391)
T ss_pred hhCCCceEEeecccccc-ccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchhHHHhhhhcCc
Confidence 56899999999999986 8999999999999999999988777667776664 5699999999999999999999999
Q ss_pred cEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC---HHHHHHHHHHHHhhcccCCcccccccccCccccccc--cccc
Q psy11239 89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIV--RDFQ 163 (410)
Q Consensus 89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~g~ 163 (410)
+|+|+||.+.+ .+|.+.++.+||+|..|++.+ ...-+..|++.+.+.+....-+-+ .+.+||+|+. ..||
T Consensus 125 k~~I~mPddqs---~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g--~fAdQFeN~AN~~aHy 199 (391)
T KOG1481|consen 125 KCHIYMPDDQS---QEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRG--WFADQFENVANWLAHY 199 (391)
T ss_pred ceEEECCChHH---HHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCccc--chhhhhcCHHHHHHHh
Confidence 99999999987 599999999999999997643 344455555555444322211111 2356777763 6899
Q ss_pred hhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccC-ceeEEeecCCCCCch---hhH-HHHHHH
Q psy11239 164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKG-SKIFLKREDLNFTGA---HKM-NNSIAQ 237 (410)
Q Consensus 164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~-~~v~~K~e~~~ptgS---~K~-R~a~~~ 237 (410)
.|+|+|||.|.. + ..|.|++.+|||||++|+ .+.|.++.++ +.+++ ..|.|| +|. ++.++.
T Consensus 200 etTGPEIw~Qtk--G-niDaFia~~GTGGTiaGV------skyLkek~~~~v~~~l----aDPpGSGlYnkV~~GVmy~ 265 (391)
T KOG1481|consen 200 ETTGPEIWHQTK--G-NIDAFIAGTGTGGTIAGV------SKYLKEKSDGRVAVFL----ADPPGSGLYNKVNYGVMYD 265 (391)
T ss_pred cCcCcHHHHhhc--C-CcceEEeccCCCcchHHH------HHHHhhcCCCceEEEE----eCCCCCchhhhhhhhhhhh
Confidence 999999999954 3 579999999999999999 4555544422 45553 345666 444 355333
No 151
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.97 E-value=1e-30 Score=260.51 Aligned_cols=189 Identities=13% Similarity=0.069 Sum_probs=152.2
Q ss_pred cccccccccccccccCceeEE-------eecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcC
Q psy11239 198 PTPIYYCKNISNILKGSKIFL-------KREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLN 270 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~-------K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G 270 (410)
.||+++++.|++.++..+||+ |+|++|||||||||++..++..+.+.+.+.++ ++|+||||+|+|++|+++|
T Consensus 62 ~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~~~Vv-~aSsGN~g~alA~~aa~~G 140 (398)
T TIGR03844 62 GPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGGKTLV-VASAGNTGRAFAEVSAITG 140 (398)
T ss_pred CCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCCCEEE-EECCCHHHHHHHHHHHHcC
Confidence 479999999988874339999 55558999999999999999999988866655 5999999999999999999
Q ss_pred CcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHH
Q psy11239 271 LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG 350 (410)
Q Consensus 271 ~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g 350 (410)
++|+||||+..++ .+...++.+||+|+.++ ++++++.+.+.+..++. + +|...+.. +|| ..+|++|++
T Consensus 141 i~~~I~vP~~~~~---~~~~~~~~~ga~vv~v~-g~~d~a~~~a~~~a~~~--g-~~~~~~~~--~p~---~ieG~~Ti~ 208 (398)
T TIGR03844 141 QPVILVVPKSSAD---RLWTTEPASSVLLVTVD-GDYTDAIALADRIATLP--G-FVPEGGAR--NVA---RRDGMGTVM 208 (398)
T ss_pred CcEEEEECCChHH---HHHHHhhCCcEEEEECC-CCHHHHHHHHHHHHHhC--C-ccccCCCC--CHH---HHhhHHHHH
Confidence 9999999986433 22223478999999884 56999999998887764 3 33221111 333 689999999
Q ss_pred HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC---------CCeEEEEccCCCCcC
Q psy11239 351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS---------NFKLVAIESGGISKK 402 (410)
Q Consensus 351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~---------~~~vigVe~~g~~~~ 402 (410)
+||++|++ ..||+||+|+|+|.++.|++.++++. -+|+++|||++++..
T Consensus 209 ~Ei~eql~---~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~ 266 (398)
T TIGR03844 209 LDAAVTIG---SLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPM 266 (398)
T ss_pred HHHHHHcC---CCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHH
Confidence 99999994 35999999999998899999888762 389999999998753
No 152
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.97 E-value=3.8e-31 Score=263.58 Aligned_cols=177 Identities=12% Similarity=0.062 Sum_probs=141.6
Q ss_pred CCCCCcCccccccccccCCceEEE-------eeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHH
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFL-------KREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCC 84 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~-------K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~ 84 (410)
....|||+++++|++.+|..+||+ |+|++|||||||||++...+..+.+.+.+.+++ +|+||||+|+|++|+
T Consensus 59 ~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~~~Vv~-aSsGN~g~alA~~aa 137 (398)
T TIGR03844 59 TRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGGKTLVV-ASAGNTGRAFAEVSA 137 (398)
T ss_pred CCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCCCEEEE-ECCCHHHHHHHHHHH
Confidence 344699999999999885559999 555599999999999988877777777555555 699999999999999
Q ss_pred HcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc-ccccc
Q psy11239 85 LLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQ 163 (410)
Q Consensus 85 ~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~ 163 (410)
++|++|+||||+.++. .+...++.+||+|+.++ ++|+++.+.+.+++++. + +| ..+++++| .++|+
T Consensus 138 ~~Gi~~~I~vP~~~~~---~~~~~~~~~ga~vv~v~-g~~d~a~~~a~~~a~~~--g-~~------~~~~~~~p~~ieG~ 204 (398)
T TIGR03844 138 ITGQPVILVVPKSSAD---RLWTTEPASSVLLVTVD-GDYTDAIALADRIATLP--G-FV------PEGGARNVARRDGM 204 (398)
T ss_pred HcCCcEEEEECCChHH---HHHHHhhCCcEEEEECC-CCHHHHHHHHHHHHHhC--C-cc------ccCCCCCHHHHhhH
Confidence 9999999999998652 22333589999999998 78999999998887653 1 22 12333344 57999
Q ss_pred hhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccc
Q psy11239 164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCK 205 (410)
Q Consensus 164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~ 205 (410)
+|+++||++|+. ..||+||+|+|+|..+.|++..+.++.
T Consensus 205 ~Ti~~Ei~eql~---~~PD~VvvPvG~G~~~~~~~~~~~~l~ 243 (398)
T TIGR03844 205 GTVMLDAAVTIG---SLPDHYFQAVGSGTGGIAAWEAAMRLI 243 (398)
T ss_pred HHHHHHHHHHcC---CCCCEEEEecCCCHHHHHHHHHHHHHH
Confidence 999999999964 359999999999988888888776643
No 153
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.97 E-value=1.3e-30 Score=252.84 Aligned_cols=190 Identities=26% Similarity=0.328 Sum_probs=148.1
Q ss_pred ccccccccc-cccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEE
Q psy11239 197 RPTPIYYCK-NISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESII 275 (410)
Q Consensus 197 ~~tpl~~~~-~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~v 275 (410)
.+|||++++ .+....++.+||+|+|++|||||||+|++.+++..+++++.++++ ++|+||||.|+|++|+.+|++|++
T Consensus 6 ~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~~~vv-~assGN~g~a~A~~a~~~g~~~~i 84 (306)
T PF00291_consen 6 GPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGGRTVV-GASSGNHGRALAYAAARLGLKCTI 84 (306)
T ss_dssp SSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTTSEEE-EESSSHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhccccccceee-eeccCCceehhhhhhhhcccccee
Confidence 379999975 333334489999999999999999999999999999888877774 599999999999999999999999
Q ss_pred EEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcc----CCCceEEecCCCCCCCC-hhHHHhhhhhHH
Q psy11239 276 YIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNN----ILNSHYLIGTASGPHPY-PTIVRDFQSIIG 350 (410)
Q Consensus 276 v~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~g~~t~g 350 (410)
|+|++. + +.++++++.+||+|+.++.. +++..+.+.+..++. ...... + ++| +.....|+.+++
T Consensus 85 ~~p~~~-~--~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~g~~~~~ 153 (306)
T PF00291_consen 85 VVPEDV-S--PEKLKQMRALGAEVILVPGD-VEGAFDDAQELAKERAELLSPFNGE-L------NQYNNPNVIAGYATIG 153 (306)
T ss_dssp EEETTS-H--HHHHHHHHHTTCEEEEESST-HHHHHHHHHHHHHHHHHHHHHSTTE-E------STTTSHHHHHHHHHHH
T ss_pred eecccc-c--cccccceeeecceEEEcccc-ccccccccccccccccccccccccc-c------Ccccchhhhhhhhhcc
Confidence 999863 3 38899999999999988643 333333333332211 000011 2 333 333789999999
Q ss_pred HHHHHhhhhcCCCCCE--EEEccCchhHHHHHHHHHhc---CCCeEEEEccCCCCcC
Q psy11239 351 YEIHQQLNFNFYNKKY--ILACVGGGSNALGIFYTFIN---SNFKLVAIESGGISKK 402 (410)
Q Consensus 351 ~Ei~~q~~~~~~~~d~--iv~~vGtGg~~~Gi~~~~~~---~~~~vigVe~~g~~~~ 402 (410)
.||.+|+. .||+ ||+|+||||+++|++.+++. +.+|||+|||.+++.+
T Consensus 154 ~Ei~~q~~----~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~~~~~vigv~~~~~~~~ 206 (306)
T PF00291_consen 154 LEIYEQLG----KPDPDYVVVPVGTGGTAAGIAAGLKELILPPVRVIGVEPEGSDPL 206 (306)
T ss_dssp HHHHHHHT----TESESEEEEEESSSHHHHHHHHHHHHHCHTTSEEEEEEETTGHHH
T ss_pred hhcccccc----cccceEEEecCCchhHHHHHHhhhhhhhcccccceeeeccCCccc
Confidence 99999995 5555 99999999999999999988 4999999999988654
No 154
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=99.97 E-value=3.4e-30 Score=252.64 Aligned_cols=191 Identities=20% Similarity=0.191 Sum_probs=139.3
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCC--CchhhhHHHHHHHHHHHhcCCceEEEeC--ccHHHHHHHHHHHHcC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIICETG--AGMHGVSTATSCCLLN 87 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~npt--GS~K~R~~~~~~~~~~~~~~~~~v~~~s--sGN~g~a~A~~a~~~G 87 (410)
..++|||+++++|++.+ +.+||+|+|++||+ ||||||.+......+.+.+...+|+ +| +||||+|+|++|+.+|
T Consensus 12 ~~~~TPl~~~~~l~~~~-g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~vvt-~g~s~gN~g~alA~~a~~~G 89 (331)
T PRK03910 12 AGLPTPLEPLPRLSAAL-GPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTLIT-AGAIQSNHARQTAAAAAKLG 89 (331)
T ss_pred cCCCCCceEhhhhhHhh-CCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEEEE-cCcchhHHHHHHHHHHHHhC
Confidence 56899999999998876 67999999999997 6999998766555566666555554 43 4899999999999999
Q ss_pred CcEEEEeccCCcccc-----chhHHHHHhcCCEEEEEeCCC-HHHHH-HHHHHHHhhcccCCcccccccccCcccccc-c
Q psy11239 88 LESIIYIGENDYKRQ-----NINVKKIKLLGGTVYLVQYGN-LKEAM-NEAIKDWSNNILNSHYLIGTASGPHPYPTI-V 159 (410)
Q Consensus 88 ~~~~iv~p~~~~~~~-----~~k~~~~~~~GA~v~~v~~g~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~ 159 (410)
++|+||||+..+..+ +.|+..|+.|||+|+.++..+ ..++. ..+.++.++. ...+++ ++++.++ .
T Consensus 90 ~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~------~~~~~~~~~ 162 (331)
T PRK03910 90 LKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQG-RRPYVI------PVGGSNALG 162 (331)
T ss_pred CcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcC-CceEEE------CCCCCCchh
Confidence 999999999876422 268899999999999998432 22222 2333333322 111221 2223333 2
Q ss_pred cccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeE
Q psy11239 160 RDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIF 217 (410)
Q Consensus 160 ~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~ 217 (410)
..|+.+++.||++|+...+..||+||+|+|||||++|+...|.+.. +.++|+
T Consensus 163 ~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~------~~~~vi 214 (331)
T PRK03910 163 ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALG------PDIPVI 214 (331)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhC------CCCeEE
Confidence 5788899999999976433369999999999999999977775422 356666
No 155
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.97 E-value=7.9e-30 Score=250.61 Aligned_cols=196 Identities=19% Similarity=0.155 Sum_probs=142.1
Q ss_pred CCCCCcCccccccccccCC-ceEEEeeCCCCCC---CchhhhHHHHHHHHHHHhcCCceEEEe--CccHHHHHHHHHHHH
Q psy11239 12 KGRPTPIYYCKNISNILKG-SKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCL 85 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~-~~i~~K~E~~npt---GS~K~R~~~~~~~~~~~~~~~~~v~~~--ssGN~g~a~A~~a~~ 85 (410)
...+|||++++++++.+|. .+||+|+|++||+ ||||||.+...+..+.+.+.. +|+++ |+||||+|+|++|+.
T Consensus 12 ~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~-~vvs~G~s~GN~g~alA~aa~~ 90 (337)
T PRK12390 12 TFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGAD-TLVSIGGVQSNHTRQVAAVAAH 90 (337)
T ss_pred CCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCC-EEEEeCCCccHHHHHHHHHHHH
Confidence 5689999999999887743 7999999999998 788999766555555555553 44445 669999999999999
Q ss_pred cCCcEEEEeccCCcc-----ccchhHHHHHhcCCEEEEEeCCCH----HHHHHHHHHHHhhcccCCcccccccccCcccc
Q psy11239 86 LNLESIIYIGENDYK-----RQNINVKKIKLLGGTVYLVQYGNL----KEAMNEAIKDWSNNILNSHYLIGTASGPHPYP 156 (410)
Q Consensus 86 ~G~~~~iv~p~~~~~-----~~~~k~~~~~~~GA~v~~v~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 156 (410)
+|++|+||||...+. .+..|+.+|+.|||+|+.++. ++ .++.+.+.+.+++.. +..|.+-.....||+
T Consensus 91 ~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 167 (337)
T PRK12390 91 LGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPD-GFDIGIRKSWEDALEDVRAAG-GKPYAIPAGASDHPL- 167 (337)
T ss_pred cCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCC-CcchhHHHHHHHHHHHHHhCC-CceEEeCCcCCCCCc-
Confidence 999999998765442 134588899999999999983 33 466667766666532 222311110112232
Q ss_pred ccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEe
Q psy11239 157 TIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLK 219 (410)
Q Consensus 157 ~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K 219 (410)
...|+.++++||++|.+..+..||+||+|+|||||++|+...|... .+.++|+.-
T Consensus 168 --~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~------~~~~rvigV 222 (337)
T PRK12390 168 --GGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAAD------GRARRVIGI 222 (337)
T ss_pred --ccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhc------CCCceEEEE
Confidence 3577888899999986422335999999999999999997776542 235677743
No 156
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=99.97 E-value=5.8e-30 Score=248.59 Aligned_cols=192 Identities=19% Similarity=0.135 Sum_probs=137.9
Q ss_pred CcCccccccccccC-CceEEEeeCCCCCC---CchhhhHHHHHHHHHHHhcCCceEEEe--CccHHHHHHHHHHHHcCCc
Q psy11239 16 TPIYYCKNISNILK-GSKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCLLNLE 89 (410)
Q Consensus 16 TPl~~~~~l~~~~~-~~~i~~K~E~~npt---GS~K~R~~~~~~~~~~~~~~~~~v~~~--ssGN~g~a~A~~a~~~G~~ 89 (410)
|||+++++|++.+| +.+||+|+|++||+ ||||||.+......+.+.+... |+++ |+||||+|+|++|+.+|++
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~-vv~~ggs~GN~g~alA~~a~~~G~~ 79 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADT-LVTVGGIQSNHTRQVAAVAAKLGLK 79 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCE-EEECCCchhHHHHHHHHHHHHcCCe
Confidence 89999999988775 47999999999999 5669998665555555555544 4445 4799999999999999999
Q ss_pred EEEEeccCCcc-----ccchhHHHHHhcCCEEEEEeCCC---HHHHHHHHHHHHhhcccCCcccccccccCccccccccc
Q psy11239 90 SIIYIGENDYK-----RQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRD 161 (410)
Q Consensus 90 ~~iv~p~~~~~-----~~~~k~~~~~~~GA~v~~v~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 161 (410)
|+||||+..+. ..+.|+.+|+.|||+|+.++... ..++.+.+.+.+.+.....+++..+. ..||+ .+.
T Consensus 80 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~ 155 (307)
T cd06449 80 CVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGG-SEHPL---GGL 155 (307)
T ss_pred EEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCC-CCCcc---cHH
Confidence 99999997762 11368999999999999997322 12333444444443311122222221 11333 467
Q ss_pred cchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 162 FQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 162 g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
|+.+++.||++|++..+..||+||+|+|||||++|+...|... .+..+|+.
T Consensus 156 G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~------~~~~~ii~ 206 (307)
T cd06449 156 GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAAL------GRQRRVIG 206 (307)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhc------CCCCeEEE
Confidence 8999999999998644446999999999999999997666432 23456664
No 157
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.96 E-value=1.3e-29 Score=248.91 Aligned_cols=195 Identities=15% Similarity=0.114 Sum_probs=143.7
Q ss_pred CCCCCcCccccccccccC-CceEEEeeCCCCCC---CchhhhHHHHHHHHHHHhcCCceEEEe--CccHHHHHHHHHHHH
Q psy11239 12 KGRPTPIYYCKNISNILK-GSKIFLKREDLNFT---GAHKMNNSIAQSLLAKFLKKKRIICET--GAGMHGVSTATSCCL 85 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~-~~~i~~K~E~~npt---GS~K~R~~~~~~~~~~~~~~~~~v~~~--ssGN~g~a~A~~a~~ 85 (410)
..++|||+++++|++.+| +.+||+|+|++||+ ||||||.+...+..+++.+... |+++ |+||||+|+|++|+.
T Consensus 11 ~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~-vvs~ggs~gN~g~alA~~a~~ 89 (337)
T TIGR01274 11 TFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTT-LVSIGGIQSNQTRQVAAVAAH 89 (337)
T ss_pred CCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCCE-EEECCCCcchHHHHHHHHHHH
Confidence 568999999999998875 35999999999987 7779997766666666666544 3433 459999999999999
Q ss_pred cCCcEEEEeccCCc--c---ccchhHHHHHhcCCEEEEEeCCCH----HHHHHHHHHHHhhcccCCcccccccccCcccc
Q psy11239 86 LNLESIIYIGENDY--K---RQNINVKKIKLLGGTVYLVQYGNL----KEAMNEAIKDWSNNILNSHYLIGTASGPHPYP 156 (410)
Q Consensus 86 ~G~~~~iv~p~~~~--~---~~~~k~~~~~~~GA~v~~v~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 156 (410)
+|++|+||||+..+ . ..+.|+.+|+.|||+|+.++ +++ .++..++.+.+++.....+++..+ ...||+
T Consensus 90 ~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~-~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~-~~~~~~- 166 (337)
T TIGR01274 90 LGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDP-DGFDIGHRNSWERALEEVRGAGGKPYPIPAG-CSDHPL- 166 (337)
T ss_pred cCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeC-CcccccchHHHHHHHHHHHhcCCceEEeCCC-CCCCcc-
Confidence 99999999998542 0 11479999999999999997 433 356666666666542222332221 122444
Q ss_pred ccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 157 TIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 157 ~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
...|+.++++||++|+...+..||+||+|+|||||++|+..++.... +.++|+.
T Consensus 167 --~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~------~~~~vig 220 (337)
T TIGR01274 167 --GGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADG------RKDRVIG 220 (337)
T ss_pred --chhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhC------CCCeEEE
Confidence 34678888999999975333469999999999999999977775421 2467774
No 158
>KOG1481|consensus
Probab=99.96 E-value=7.3e-30 Score=232.09 Aligned_cols=193 Identities=21% Similarity=0.200 Sum_probs=159.8
Q ss_pred cccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 198 ~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
.|||+++..|++.. +++|+.|.|.+||.||.|||-|++++..|++.|. ...|+|.|+||+|.++|..|+.+|++|+
T Consensus 49 nTpliri~sLs~aT-GcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIslA~v~~a~Gyk~~ 127 (391)
T KOG1481|consen 49 NTPLIRINSLSNAT-GCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGISLAHVARALGYKCH 127 (391)
T ss_pred CCceEEeecccccc-ccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchhHHHhhhhcCcceE
Confidence 79999999999887 8999999999999999999999999999998886 5788999999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCC---HHHHHHHHHHHHHccCCCc----eEEecCCCCCCCChh--HHHhh
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGN---LKEAMNEAIKDWSNNILNS----HYLIGTASGPHPYPT--IVRDF 345 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~---~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~g 345 (410)
|+||++. + +.|.+.++.+||+|..|+.-. ...-++.|++.+.+..... -|+- ++|+. +..+|
T Consensus 128 I~mPddq-s--~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fA------dQFeN~AN~~aH 198 (391)
T KOG1481|consen 128 IYMPDDQ-S--QEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFA------DQFENVANWLAH 198 (391)
T ss_pred EECCChH-H--HHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchh------hhhcCHHHHHHH
Confidence 9999754 3 478999999999999987543 3333444444333221111 1221 66633 37899
Q ss_pred hhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC---CCeEEEEccCCCCcCC
Q psy11239 346 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS---NFKLVAIESGGISKKR 403 (410)
Q Consensus 346 ~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~---~~~vigVe~~g~~~~~ 403 (410)
|.|+|+|||.|.. +.+|++++.+|||||++|+.+++++. .++++-.+|-||.+-+
T Consensus 199 yetTGPEIw~Qtk---GniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYn 256 (391)
T KOG1481|consen 199 YETTGPEIWHQTK---GNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYN 256 (391)
T ss_pred hcCcCcHHHHhhc---CCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhh
Confidence 9999999999996 68999999999999999999999875 5889999999997643
No 159
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.96 E-value=9.8e-30 Score=246.76 Aligned_cols=189 Identities=26% Similarity=0.301 Sum_probs=139.2
Q ss_pred CCCCCcCcccc-ccccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCK-NISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~-~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
..++|||++++ ++....++.+||+|+|++|||||||||.+...+..+++.+...+ +++|+||||+|+|++|+.+|++|
T Consensus 4 ~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~~~v-v~assGN~g~a~A~~a~~~g~~~ 82 (306)
T PF00291_consen 4 GIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGGRTV-VGASSGNHGRALAYAAARLGLKC 82 (306)
T ss_dssp GSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTTSEE-EEESSSHHHHHHHHHHHHHTCEE
T ss_pred CCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccccee-eeeccCCceehhhhhhhhccccc
Confidence 45799999976 33434458999999999999999999988766666666655455 55799999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhc---ccCCcccccccccCcccccc-ccccchhH
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNN---ILNSHYLIGTASGPHPYPTI-VRDFQSII 166 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~-~~~g~~ti 166 (410)
++|||+..+ +.|+++|+.+||+|+.++ ++++++.+.+.+.+++. .....+ ..+||+++ ...|+.++
T Consensus 83 ~i~~p~~~~---~~~~~~~~~~Ga~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~ 152 (306)
T PF00291_consen 83 TIVVPEDVS---PEKLKQMRALGAEVILVP-GDVEGAFDDAQELAKERAELLSPFNG------ELNQYNNPNVIAGYATI 152 (306)
T ss_dssp EEEEETTSH---HHHHHHHHHTTCEEEEES-STHHHHHHHHHHHHHHHHHHHHHSTT------EESTTTSHHHHHHHHHH
T ss_pred eeeeccccc---cccccceeeecceEEEcc-cccccccccccccccccccccccccc------ccCcccchhhhhhhhhc
Confidence 999999977 489999999999999997 45454444444444321 000000 02344334 47999999
Q ss_pred HHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 167 GYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 167 ~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
+.||++|+. ..++|+||+|+|+||+++|+...+..+ .. +.++++.
T Consensus 153 ~~Ei~~q~~--~~d~d~vvv~~GtGg~~~Gi~~~~~~~----~~-~~~~vig 197 (306)
T PF00291_consen 153 GLEIYEQLG--KPDPDYVVVPVGTGGTAAGIAAGLKEL----IL-PPVRVIG 197 (306)
T ss_dssp HHHHHHHHT--TESESEEEEEESSSHHHHHHHHHHHHH----CH-TTSEEEE
T ss_pred chhcccccc--cccceEEEecCCchhHHHHHHhhhhhh----hc-cccccee
Confidence 999999975 222345999999999999997776543 12 3567764
No 160
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=226.87 Aligned_cols=311 Identities=26% Similarity=0.367 Sum_probs=217.5
Q ss_pred CCCCCcCccccccccccC-CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 12 KGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~-~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
.+|||||++.++|.+.|+ ..+||.|.|...||||+|...++.+++.++..+.+.+++++++|.+|.|++.+|+.+|++|
T Consensus 75 ~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQWGsAlslA~alf~lk~ 154 (432)
T COG1350 75 IGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQWGSALSLAAALFGLKA 154 (432)
T ss_pred hCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCchHHHHHHHHHHHhCcee
Confidence 458999999999999886 6799999999999999999999999999999999999999888999999999999999999
Q ss_pred EEEeccCCccccchhHHHHHhcCCEEEEEeC-----------------CCHHHHHHHHHHHHhhcccCCcccccccccCc
Q psy11239 91 IIYIGENDYKRQNINVKKIKLLGGTVYLVQY-----------------GNLKEAMNEAIKDWSNNILNSHYLIGTASGPH 153 (410)
Q Consensus 91 ~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (410)
+|||-..+..++|-++.+|+.|||+|+..++ |++.-++.+|.|++.++ .+..|++|+..+ |
T Consensus 155 ~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~-~~~kY~lGSVln-h 232 (432)
T COG1350 155 TVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKN-ENTKYSLGSVLN-H 232 (432)
T ss_pred EEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhC-CCceecchhHHH-H
Confidence 9999998888899999999999999997632 45666888899888776 357888887654 2
Q ss_pred cccccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCC---chhh
Q psy11239 154 PYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFT---GAHK 230 (410)
Q Consensus 154 p~~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt---gS~K 230 (410)
+.-||..+|.|.-+|++..+..||++|.|||+|++++|+.-||+. ..|.... ..++....-..-|+ |-+|
T Consensus 233 -----vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~-d~l~g~~-~~~fiAvep~a~P~lT~GeY~ 305 (432)
T COG1350 233 -----VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIG-DKLRGKK-ETRFIAVEPKACPKLTKGEYR 305 (432)
T ss_pred -----HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhh-hhhcCCc-eeEEEEeCCccCCccccceee
Confidence 567899999999999988888999999999999999999999986 4443221 13333322222333 4443
Q ss_pred HH----HHHHHHHHHHHcCCCceEEe-cCch--HHHHHHHHH-HHHcCCcEEEEEcCCCccchhhhHHHHHHCCC-E-EE
Q psy11239 231 MN----NSIAQSLLAKFLKKKRIICE-TGAG--MHGVSTATS-CCLLNLESIIYIGENDYKRQNINVKKIKLLGG-T-VY 300 (410)
Q Consensus 231 ~R----~a~~~~~~a~~~g~~~~v~~-~ssG--N~g~a~A~~-a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga-~-v~ 300 (410)
.- .-+--++..-..|.+.+.-- ..+| .||.|-... -.+.|+ |-....++ ....+..+.|-- | ++
T Consensus 306 YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Gi-----v~a~ay~Q-~Evfeaa~lFa~~EGiV 379 (432)
T COG1350 306 YDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGI-----VEARAYDQ-EEVFEAAVLFARTEGIV 379 (432)
T ss_pred ccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCc-----ccceecCh-HHHHHHHHHHHHhcCCc
Confidence 21 11112234456777655321 2333 677654332 223443 21112221 122222222221 1 55
Q ss_pred EEeCCC--HHHHHHHHHHHHHccCCCceEEecCCCCCCCChh
Q psy11239 301 LVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPT 340 (410)
Q Consensus 301 ~v~~g~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (410)
+.|+.+ +..++++|++..++. ....++-+.+| |..-|
T Consensus 380 PAPEsaHAi~~aid~A~~a~~~g--eekvI~fnlSG-HGllD 418 (432)
T COG1350 380 PAPESAHAIKAAIDEALKAREEG--EEKVILFNLSG-HGLLD 418 (432)
T ss_pred cCCcchhhHHHHHHHHHhccccC--ceeEEEEeccC-ccccc
Confidence 555444 666666666654443 23334445555 66533
No 161
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.96 E-value=1.5e-28 Score=240.61 Aligned_cols=192 Identities=19% Similarity=0.094 Sum_probs=135.2
Q ss_pred CCCCCcCccccccccccCCceEEEeeCCCCCC--CchhhhHHHHHHHHHHHhcCCceEE-EeCccHHHHHHHHHHHHcCC
Q psy11239 12 KGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIIC-ETGAGMHGVSTATSCCLLNL 88 (410)
Q Consensus 12 ~~~~TPl~~~~~l~~~~~~~~i~~K~E~~npt--GS~K~R~~~~~~~~~~~~~~~~~v~-~~ssGN~g~a~A~~a~~~G~ 88 (410)
..++|||+++++|++.. +.+||+|+|++||+ ||||||.+...+..+.+.+...+++ ++|+||||+|+|++|+.+|+
T Consensus 18 ~~~~TPl~~~~~l~~~~-g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~ 96 (329)
T PRK14045 18 IPWETPIQYLPNISREL-GADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKLGL 96 (329)
T ss_pred CCCCCCcccchhhHHHh-CCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHcCC
Confidence 45799999999998876 58999999999997 8999998765555555566655553 57889999999999999999
Q ss_pred cEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-C---HHHHHHHHHHHHhhcccCCcccccccccCccccccccccch
Q psy11239 89 ESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-N---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQS 164 (410)
Q Consensus 89 ~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ 164 (410)
+|++|||...+. ..|..+++.|||+++.++.. + ...+.+.+.++.++. ...+|++.+. .+|+ ...++.
T Consensus 97 ~~~ivvp~~~~~--~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~p~~~--~n~~---~~~g~~ 168 (329)
T PRK14045 97 DAVLVLRGKEEL--KGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEG-RKPYIIPPGG--ASPV---GTLGYV 168 (329)
T ss_pred eEEEEEeCCCCC--CcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcC-CCEEEECCCC--Cchh---HHHHHH
Confidence 999999986542 34777889999999988632 2 223444444443332 1122222221 2222 124444
Q ss_pred hHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEE
Q psy11239 165 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFL 218 (410)
Q Consensus 165 ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~ 218 (410)
+...||++|+...+..+|+||+|+|||||++|+...+.. ..+.++|+.
T Consensus 169 ~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~------~~~~~kVig 216 (329)
T PRK14045 169 RAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAI------LNAEWRVVG 216 (329)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHH------hCCCCeEEE
Confidence 444499999764434689999999999999999665532 223567774
No 162
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.95 E-value=2.9e-27 Score=233.44 Aligned_cols=178 Identities=22% Similarity=0.271 Sum_probs=149.5
Q ss_pred CCCCcCccccccccccC--CceEEEeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcE
Q psy11239 13 GRPTPIYYCKNISNILK--GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES 90 (410)
Q Consensus 13 ~~~TPl~~~~~l~~~~~--~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 90 (410)
...||+++.+++...++ +.++|+|.|++|||||||||++...+.++++.+...+++ +||||+|.|+|+++++.|++|
T Consensus 74 eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~~~I~~-ASSGnTgAs~aaya~rag~~v 152 (411)
T COG0498 74 EGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGAKTILC-ASSGNTGASAAAYAARAGLKV 152 (411)
T ss_pred hccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcCCEEEE-eCCchHHHHHHHHhccCCCeE
Confidence 45799999988888886 346999999999999999999887777777777644555 699999999999999999999
Q ss_pred EEEeccC-CccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccccccccccchhHHHH
Q psy11239 91 IIYIGEN-DYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYE 169 (410)
Q Consensus 91 ~iv~p~~-~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ti~~E 169 (410)
.|++|++ .+ +.|+.+|..+||+++.++ |++|++++.+.+.+.+. +..+ .....||| -+.||+|+++|
T Consensus 153 ~Vl~P~g~vs---~~k~~q~~~~ga~~i~v~-G~fDda~~~vk~~~~~~--~~~~---~~nsiNp~---rlegq~t~~fe 220 (411)
T COG0498 153 FVLYPKGKVS---PGKLAQMLTLGAHVIAVD-GNFDDAQELVKEAANRE--GLLS---AVNSINPY---RLEGQKTYAFE 220 (411)
T ss_pred EEEecCCCCC---HHHHHHHHhcCCEEEEEc-CcHHHHHHHHHHHHhhC--Ccee---eccccCHH---HhhhhhhhHhH
Confidence 9999997 65 689999999999999999 99999999999988743 1233 22234666 46999999999
Q ss_pred HHHhhhhcCCCccEEEEecCCCCceeeccccccccc
Q psy11239 170 IHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCK 205 (410)
Q Consensus 170 I~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~ 205 (410)
|++|+.. ..||+|++|+|+||++.+.+.++.+..
T Consensus 221 ~~~ql~~--~~p~~v~vPvGn~gni~a~~~g~~~~~ 254 (411)
T COG0498 221 IAEQLGW--KAPDHVVVPVGNGGNLLAIYKGFKEGL 254 (411)
T ss_pred HHHHhCC--CCCCeEEEeCCchHHHHHHHHHHHhcc
Confidence 9999653 579999999999999999988776543
No 163
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.94 E-value=5.3e-26 Score=224.52 Aligned_cols=192 Identities=22% Similarity=0.296 Sum_probs=161.7
Q ss_pred cccccccccccccccc--CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEE
Q psy11239 197 RPTPIYYCKNISNILK--GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESI 274 (410)
Q Consensus 197 ~~tpl~~~~~L~~~~~--~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~ 274 (410)
..||+++.+.+...++ +.++|+|.|..|||||||||++...+..+.+.+. ..|+++||||+|.++|+++.+.|++|.
T Consensus 75 g~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-~~I~~ASSGnTgAs~aaya~rag~~v~ 153 (411)
T COG0498 75 GGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-KTILCASSGNTGASAAAYAARAGLKVF 153 (411)
T ss_pred ccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-CEEEEeCCchHHHHHHHHhccCCCeEE
Confidence 4788888877766663 2459999999999999999999888888888886 455569999999999999999999999
Q ss_pred EEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHH
Q psy11239 275 IYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIH 354 (410)
Q Consensus 275 vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~ 354 (410)
|++|.+..+ ..++.+|..+||+++.++ |++||+.+.+.+.+.+. +.++..+ .. ||+ ...||.|+++||+
T Consensus 154 Vl~P~g~vs--~~k~~q~~~~ga~~i~v~-G~fDda~~~vk~~~~~~--~~~~~~n-si--Np~---rlegq~t~~fe~~ 222 (411)
T COG0498 154 VLYPKGKVS--PGKLAQMLTLGAHVIAVD-GNFDDAQELVKEAANRE--GLLSAVN-SI--NPY---RLEGQKTYAFEIA 222 (411)
T ss_pred EEecCCCCC--HHHHHHHHhcCCEEEEEc-CcHHHHHHHHHHHHhhC--Cceeecc-cc--CHH---HhhhhhhhHhHHH
Confidence 999987455 478899999999999994 88999999999988854 3344432 22 555 5789999999999
Q ss_pred HhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--------CCeEEEEccCCCCcC
Q psy11239 355 QQLNFNFYNKKYILACVGGGSNALGIFYTFINS--------NFKLVAIESGGISKK 402 (410)
Q Consensus 355 ~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--------~~~vigVe~~g~~~~ 402 (410)
+|+. +..||+|++|+|+||++.|++.+++.. .+++.+|++++....
T Consensus 223 ~ql~--~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~ 276 (411)
T COG0498 223 EQLG--WKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPG 276 (411)
T ss_pred HHhC--CCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccch
Confidence 9996 468999999999999999999999863 779999999987653
No 164
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.93 E-value=8.9e-26 Score=209.62 Aligned_cols=202 Identities=33% Similarity=0.517 Sum_probs=175.3
Q ss_pred eecccccccccccccccc-CceeEEeecCCCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcE
Q psy11239 195 LGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLES 273 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~~~-~~~v~~K~e~~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~ 273 (410)
.|.+|||++..+|.+.++ .++||.|.|+..|+||||...|+.+...++..|.+++++|.++|.+|.|++.+|+.+|++|
T Consensus 75 ~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQWGsAlslA~alf~lk~ 154 (432)
T COG1350 75 IGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQWGSALSLAAALFGLKA 154 (432)
T ss_pred hCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCchHHHHHHHHHHHhCcee
Confidence 478999999999987764 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCccchhhhHHHHHHCCCEEEEEeC-----------------CCHHHHHHHHHHHHHccCCCceEEecCCCCCC
Q psy11239 274 IIYIGENDYKRQNINVKKIKLLGGTVYLVQY-----------------GNLKEAMNEAIKDWSNNILNSHYLIGTASGPH 336 (410)
Q Consensus 274 ~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~-----------------g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 336 (410)
+|||-..+..+++-+..+|+.+||+|+..|+ |++-=++.+|.+.+.+++ +.-|.+++..| |
T Consensus 155 ~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~-~~kY~lGSVln-h 232 (432)
T COG1350 155 TVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNE-NTKYSLGSVLN-H 232 (432)
T ss_pred EEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCC-CceecchhHHH-H
Confidence 9999766666667788899999999998653 234457788888888773 57888887765 3
Q ss_pred CChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC------CCeEEEEccCCCCcCC
Q psy11239 337 PYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS------NFKLVAIESGGISKKR 403 (410)
Q Consensus 337 ~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~------~~~vigVe~~g~~~~~ 403 (410)
+..||..+|.|...|+...+..||++|.|||+|++++|+.--|... ..++|+|||..++-++
T Consensus 233 -----vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT 300 (432)
T COG1350 233 -----VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLT 300 (432)
T ss_pred -----HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccc
Confidence 6889999999999999877889999999999999999997666422 4899999999998764
No 165
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.91 E-value=4.6e-23 Score=191.18 Aligned_cols=199 Identities=20% Similarity=0.232 Sum_probs=162.2
Q ss_pred eeccccccccccccccccCceeEEeecCCCCC--chhhHHHHHHHHHHHHHcCCCceEEecCch--HHHHHHHHHHHHcC
Q psy11239 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKRIICETGAG--MHGVSTATSCCLLN 270 (410)
Q Consensus 195 ~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~pt--gS~K~R~a~~~~~~a~~~g~~~~v~~~ssG--N~g~a~A~~a~~~G 270 (410)
...+||+..++++++++ +.++|+||||+.+. |.||+|++.+.+..|.+.|.+++|+ +++- ||.+++|++|+++|
T Consensus 12 ~~~pTPiq~L~rls~~l-g~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dTlvT-~GgiQSNh~r~tAavA~~lG 89 (323)
T COG2515 12 IFGPTPIQKLPRLSAHL-GVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADTLVT-YGGIQSNHVRQTAAVAAKLG 89 (323)
T ss_pred CCCCChhhhHHHHHHhc-CeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcEEEE-ecccchhHHHHHHHHHHhcC
Confidence 45689999999999998 59999999999653 8899999999888999999999887 5554 99999999999999
Q ss_pred CcEEEEEcCCC-ccchhhhHHHHHHCCCEEEEEeCCC-H--HHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhh
Q psy11239 271 LESIIYIGEND-YKRQNINVKKIKLLGGTVYLVQYGN-L--KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQ 346 (410)
Q Consensus 271 ~~~~vv~p~~~-~~~~~~~~~~~~~~Ga~v~~v~~g~-~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (410)
++|++++.... .-....|+.+.+.+|++++.++.+. + ....+...+..++++ +..|++.... .||+. ..||
T Consensus 90 l~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g-~kpyvIp~GG-~~~~g---~lGy 164 (323)
T COG2515 90 LKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQG-GKPYVIPEGG-SSPLG---ALGY 164 (323)
T ss_pred CcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcC-CCCcEeccCC-cCccc---cccH
Confidence 99999996432 0023578899999999999998776 3 556667777777774 4566653222 36663 4577
Q ss_pred hhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC--CCeEEEEccCCCCc
Q psy11239 347 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS--NFKLVAIESGGISK 401 (410)
Q Consensus 347 ~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~--~~~vigVe~~g~~~ 401 (410)
-..+.||.+|...+ -.+|.||+++|||||.||+..++... +.+|||+...+...
T Consensus 165 v~~a~Ei~~Q~~~~-~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~ 220 (323)
T COG2515 165 VRLALEIAEQAEQL-LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPE 220 (323)
T ss_pred HHHHHHHHHHHhhc-cCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHH
Confidence 77889999999854 68999999999999999999999865 99999999887654
No 166
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.83 E-value=1.2e-19 Score=168.42 Aligned_cols=184 Identities=22% Similarity=0.231 Sum_probs=137.0
Q ss_pred CCCCCCCcCccccccccccCCceEEEeeCCCCCC--CchhhhHHHHHHHHHHHhcCCc-eEEEeCc--cHHHHHHHHHHH
Q psy11239 10 PKKGRPTPIYYCKNISNILKGSKIFLKREDLNFT--GAHKMNNSIAQSLLAKFLKKKR-IICETGA--GMHGVSTATSCC 84 (410)
Q Consensus 10 ~~~~~~TPl~~~~~l~~~~~~~~i~~K~E~~npt--GS~K~R~~~~~~~~~~~~~~~~-~v~~~ss--GN~g~a~A~~a~ 84 (410)
++..+|||+.+++++++++ +.+||+|+||+.+- |.+|.|. +++++.++..++. ++++.++ +||.+++|++|+
T Consensus 10 ~l~~~pTPiq~L~rls~~l-g~eiYiKRDD~t~l~~gGNK~RK--Lefll~eal~~g~dTlvT~GgiQSNh~r~tAavA~ 86 (323)
T COG2515 10 ELIFGPTPIQKLPRLSAHL-GVEIYIKRDDLTGLAFGGNKIRK--LEFLLGEALRKGADTLVTYGGIQSNHVRQTAAVAA 86 (323)
T ss_pred ccCCCCChhhhHHHHHHhc-CeEEEEEcccccccccCccHHHH--HHHHHhhhhhcCCcEEEEecccchhHHHHHHHHHH
Confidence 4467899999999999998 59999999999664 9999996 6666666666554 5555566 999999999999
Q ss_pred HcCCcEEEEeccCC-ccccchhHHHHHhcCCEEEEEeCCC-H--HHHHHHHHHHHhhcccCCcccccccccCcccccccc
Q psy11239 85 LLNLESIIYIGEND-YKRQNINVKKIKLLGGTVYLVQYGN-L--KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVR 160 (410)
Q Consensus 85 ~~G~~~~iv~p~~~-~~~~~~k~~~~~~~GA~v~~v~~g~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 160 (410)
++|++|+.++.... .-..+.+..+.+.+|++++.++.+. + ....+..++..++.+...+.++.+- .||+ ..
T Consensus 87 ~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG--~~~~---g~ 161 (323)
T COG2515 87 KLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGG--SSPL---GA 161 (323)
T ss_pred hcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCC--cCcc---cc
Confidence 99999999996643 1123578999999999999999764 3 4445555555555433223222211 2333 23
Q ss_pred ccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeecccccc
Q psy11239 161 DFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIY 202 (410)
Q Consensus 161 ~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~ 202 (410)
-||-..+.||.+|.+.. ..+|+||+++|||||.+|+.-++.
T Consensus 162 lGyv~~a~Ei~~Q~~~~-~~fD~vVva~gs~gT~AGl~~g~~ 202 (323)
T COG2515 162 LGYVRLALEIAEQAEQL-LKFDSVVVAPGSGGTHAGLLVGLA 202 (323)
T ss_pred ccHHHHHHHHHHHHhhc-cCCCEEEEeCCCcchHHHHHHHhh
Confidence 46777778999997643 579999999999999999955553
No 167
>PRK09225 threonine synthase; Validated
Probab=99.80 E-value=2.2e-19 Score=181.47 Aligned_cols=167 Identities=14% Similarity=0.011 Sum_probs=124.3
Q ss_pred CCcCccccccccccCCceEEEeeCCCCCCCchhhhHHHH---HHHHHHHhcCCceEEEeCccHHHHHH-HHHHHHcCCcE
Q psy11239 15 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIA---QSLLAKFLKKKRIICETGAGMHGVST-ATSCCLLNLES 90 (410)
Q Consensus 15 ~TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~---~~~~~~~~~~~~~v~~~ssGN~g~a~-A~~a~~~G~~~ 90 (410)
.+||.++. .++|+.--+++||||||||++.. .+..+.+ +...+|+.+||||+|.|+ |.++.+.|++|
T Consensus 88 ~~pl~~l~--------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~ATSGdtG~Aa~aaf~~~~gi~~ 158 (462)
T PRK09225 88 IAPLVQLD--------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGATSGDTGSAAAEAFRGKPNVRV 158 (462)
T ss_pred ccceEEeC--------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcCCCcHHHHHHHHHhCcCCCEE
Confidence 37776652 35888777999999999997643 2223333 434455557999999998 89999999999
Q ss_pred EEEeccC-CccccchhHHHHHhc-CCEE--EEEeCCCHHHHHHHHHHHHhhccc---CCcccccccccCccccccccccc
Q psy11239 91 IIYIGEN-DYKRQNINVKKIKLL-GGTV--YLVQYGNLKEAMNEAIKDWSNNIL---NSHYLIGTASGPHPYPTIVRDFQ 163 (410)
Q Consensus 91 ~iv~p~~-~~~~~~~k~~~~~~~-GA~v--~~v~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~g~ 163 (410)
+|+.|++ .+ +.++.+|..+ |++| +.|+ |+++++...+.+...+..- ..++..+ ..||+ .+.+|
T Consensus 159 ~V~~P~g~vs---~~q~~Qm~t~~g~nv~vi~V~-G~fDD~q~~vk~~~~d~~~~~~~~l~saN---SiN~~---Ri~gQ 228 (462)
T PRK09225 159 VILYPKGKVS---PVQEKQMTTLQGDNIHVVAVE-GNFDDCQALVKAAFNDEELKEKLKLSSAN---SINIG---RLLAQ 228 (462)
T ss_pred EEEEcCCCCC---HHHHHHHHhhcCCCeEEEEeC-CCHHHHHHHHHHHhhchhhhhcCceEEEe---ccCHH---HHHHH
Confidence 9999996 66 4789999999 9976 7788 8999999988887654210 0122112 13443 47999
Q ss_pred hhHHHHHHHhhhhcCCCccEEEEecCCCCceeecccc
Q psy11239 164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTP 200 (410)
Q Consensus 164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tp 200 (410)
.+..+|+++|+......||+|++|+|+||++.|.+..
T Consensus 229 ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A 265 (462)
T PRK09225 229 IVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA 265 (462)
T ss_pred HHHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHH
Confidence 9999999999753223599999999999999988643
No 168
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.78 E-value=6.9e-19 Score=177.99 Aligned_cols=167 Identities=13% Similarity=-0.038 Sum_probs=124.3
Q ss_pred CcCccccccccccCCceEEEeeCCCCCCCchhhhHHHHH---HHHHHHh-cCCceEEEeCccHHHHH-HHHHHHHcCCcE
Q psy11239 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQ---SLLAKFL-KKKRIICETGAGMHGVS-TATSCCLLNLES 90 (410)
Q Consensus 16 TPl~~~~~l~~~~~~~~i~~K~E~~nptGS~K~R~~~~~---~~~~~~~-~~~~~v~~~ssGN~g~a-~A~~a~~~G~~~ 90 (410)
+||.++ +.++|++-.+++||||||||++... +....+. ....+|+.+||||+|.| +++++.+.|++|
T Consensus 88 ~pl~~l--------~~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v 159 (460)
T cd01560 88 APLVQL--------GDNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDV 159 (460)
T ss_pred cceEEe--------CCCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHhCcCCCEE
Confidence 677664 2468999999999999999976433 2223222 23334555699999999 589999999999
Q ss_pred EEEeccC-CccccchhHHHHHhcCC---EEEEEeCCCHHHHHHHHHHHHhhccc--C-CcccccccccCccccccccccc
Q psy11239 91 IIYIGEN-DYKRQNINVKKIKLLGG---TVYLVQYGNLKEAMNEAIKDWSNNIL--N-SHYLIGTASGPHPYPTIVRDFQ 163 (410)
Q Consensus 91 ~iv~p~~-~~~~~~~k~~~~~~~GA---~v~~v~~g~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~p~~~~~~~g~ 163 (410)
+|+.|++ .+ +.++.+|..+|+ +++.|+ |+|+++...+.+.+.+..- + .++..+ ..||+ .+.+|
T Consensus 160 ~Vl~P~g~vs---~~Q~~Qm~t~g~~Nv~vi~V~-G~fDd~q~~vk~~~~d~~~~~~~~l~saN---SiN~~---Ri~~Q 229 (460)
T cd01560 160 VVLYPKGGVS---PIQELQMTTLPADNVHVVAVE-GDFDDCQSLVKALFADEDFNKKLKLSSAN---SINWA---RILAQ 229 (460)
T ss_pred EEEEcCCCCC---HHHHHHHHhhCCCceEEEEEc-CCHHHHHHHHHHHhcChhhHhcceEEEEe---ccCHH---HHHHH
Confidence 9999996 66 588999999997 899998 8999999988887653200 0 122112 12333 47899
Q ss_pred hhHHHHHHHhhhhcC-CCccEEEEecCCCCceeecccc
Q psy11239 164 SIIGYEIHQQLNFNF-YNKKYILACVGGGSNALGRPTP 200 (410)
Q Consensus 164 ~ti~~EI~~q~~~~~-~~~d~iv~~vG~Gg~~~G~~tp 200 (410)
.+..+|+++|+.... ..|+.|++|+|+||.+.|.+..
T Consensus 230 ~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~A 267 (460)
T cd01560 230 IVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYA 267 (460)
T ss_pred HHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHH
Confidence 999999999975431 2689999999999999988653
No 169
>PRK09225 threonine synthase; Validated
Probab=99.73 E-value=9.7e-17 Score=162.33 Aligned_cols=176 Identities=14% Similarity=0.004 Sum_probs=129.7
Q ss_pred eeEEeecCCCCCchhhHHHHHH---HHHHHHHcCCCceEEecCchHHHHHH-HHHHHHcCCcEEEEEcCCCccchhhhHH
Q psy11239 215 KIFLKREDLNFTGAHKMNNSIA---QSLLAKFLKKKRIICETGAGMHGVST-ATSCCLLNLESIIYIGENDYKRQNINVK 290 (410)
Q Consensus 215 ~v~~K~e~~~ptgS~K~R~a~~---~~~~a~~~g~~~~v~~~ssGN~g~a~-A~~a~~~G~~~~vv~p~~~~~~~~~~~~ 290 (410)
++|+..-..+||+|||||++.. .+..+.+ +....|+++||||+|.|+ |.++.+.|++|+|++|++..+ ..+..
T Consensus 97 ~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs--~~q~~ 173 (462)
T PRK09225 97 NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVS--PVQEK 173 (462)
T ss_pred CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCC--HHHHH
Confidence 4666666789999999999865 4455555 434455669999999998 788999999999999986444 36677
Q ss_pred HHHHC-CCEE--EEEeCCCHHHHHHHHHHHHHccC---CCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCC
Q psy11239 291 KIKLL-GGTV--YLVQYGNLKEAMNEAIKDWSNNI---LNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK 364 (410)
Q Consensus 291 ~~~~~-Ga~v--~~v~~g~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~ 364 (410)
+|..+ |++| +.| +|++|++...+.+...+.. ...++..++ . |++ ...+|.+..+|+.+|+......|
T Consensus 174 Qm~t~~g~nv~vi~V-~G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-i--N~~---Ri~gQ~~yyfea~~ql~~~~~~p 246 (462)
T PRK09225 174 QMTTLQGDNIHVVAV-EGNFDDCQALVKAAFNDEELKEKLKLSSANS-I--NIG---RLLAQIVYYFYAYLQLGIEAGEK 246 (462)
T ss_pred HHHhhcCCCeEEEEe-CCCHHHHHHHHHHHhhchhhhhcCceEEEec-c--CHH---HHHHHHHHHHHHHHHhccccCCC
Confidence 88888 8976 666 4779999888777654410 012444333 2 445 57899999999999996211359
Q ss_pred CEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCCCCc
Q psy11239 365 KYILACVGGGSNALGIFYTFIN--SNFKLVAIESGGISK 401 (410)
Q Consensus 365 d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g~~~ 401 (410)
|+|++|+|+||.+.|.+.+.+- +-.|+|+++ ..+++
T Consensus 247 ~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~ 284 (462)
T PRK09225 247 VNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDV 284 (462)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChH
Confidence 9999999999999999877432 256899987 44433
No 170
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.70 E-value=4.7e-16 Score=157.42 Aligned_cols=176 Identities=13% Similarity=-0.041 Sum_probs=129.7
Q ss_pred ceeEEeecCCCCCchhhHHHHHHH---HHHHHHc-CCCceEEecCchHHHHH-HHHHHHHcCCcEEEEEcCCCccchhhh
Q psy11239 214 SKIFLKREDLNFTGAHKMNNSIAQ---SLLAKFL-KKKRIICETGAGMHGVS-TATSCCLLNLESIIYIGENDYKRQNIN 288 (410)
Q Consensus 214 ~~v~~K~e~~~ptgS~K~R~a~~~---~~~a~~~-g~~~~v~~~ssGN~g~a-~A~~a~~~G~~~~vv~p~~~~~~~~~~ 288 (410)
.++|++....+||+|||||++..+ +..+.+. .....|+++||||+|.| ++.++.+.|++|+|++|++..+ ..+
T Consensus 95 ~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs--~~Q 172 (460)
T cd01560 95 DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVS--PIQ 172 (460)
T ss_pred CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCCCC--HHH
Confidence 367888888999999999988644 3344333 23334455999999999 5899999999999999986444 367
Q ss_pred HHHHHHCCC---EEEEEeCCCHHHHHHHHHHHHHccC---CCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhc-C
Q psy11239 289 VKKIKLLGG---TVYLVQYGNLKEAMNEAIKDWSNNI---LNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFN-F 361 (410)
Q Consensus 289 ~~~~~~~Ga---~v~~v~~g~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~-~ 361 (410)
..+|..+|+ +++.|+ |++|++...+.+...+.. .-.++..++ . |++ ...+|.+..+|++.|+... .
T Consensus 173 ~~Qm~t~g~~Nv~vi~V~-G~fDd~q~~vk~~~~d~~~~~~~~l~saNS-i--N~~---Ri~~Q~~yyf~a~~ql~~~~~ 245 (460)
T cd01560 173 ELQMTTLPADNVHVVAVE-GDFDDCQSLVKALFADEDFNKKLKLSSANS-I--NWA---RILAQIVYYFYAYLQLLKRGE 245 (460)
T ss_pred HHHHHhhCCCceEEEEEc-CCHHHHHHHHHHHhcChhhHhcceEEEEec-c--CHH---HHHHHHHHHHHHHHHhccccC
Confidence 789999997 788884 789999888777654310 012344333 1 444 5789999999999999621 1
Q ss_pred CCCCEEEEccCchhHHHHHHHHHhc--CCCeEEEEccCC
Q psy11239 362 YNKKYILACVGGGSNALGIFYTFIN--SNFKLVAIESGG 398 (410)
Q Consensus 362 ~~~d~iv~~vGtGg~~~Gi~~~~~~--~~~~vigVe~~g 398 (410)
..||+|++|+|+||.+.|.+.+.+- +-.|+|+++-..
T Consensus 246 ~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n 284 (460)
T cd01560 246 GEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN 284 (460)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC
Confidence 2699999999999999999887642 255888865543
No 171
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.53 E-value=6e-14 Score=130.00 Aligned_cols=193 Identities=15% Similarity=0.148 Sum_probs=149.0
Q ss_pred cccccccccccccc----cc---CceeEEeecCCCC-CchhhHHHHHHHHH-HHHH----cCC-----------------
Q psy11239 197 RPTPIYYCKNISNI----LK---GSKIFLKREDLNF-TGAHKMNNSIAQSL-LAKF----LKK----------------- 246 (410)
Q Consensus 197 ~~tpl~~~~~L~~~----~~---~~~v~~K~e~~~p-tgS~K~R~a~~~~~-~a~~----~g~----------------- 246 (410)
+.+|+++++.+.+. +. ..++++|++..-| +||.|.|+-.+.++ .|++ .|.
T Consensus 77 IES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~ 156 (443)
T COG3048 77 IESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKD 156 (443)
T ss_pred eccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHH
Confidence 46777777654321 11 3589999998887 59999998888776 3442 221
Q ss_pred ---CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCC
Q psy11239 247 ---KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNIL 323 (410)
Q Consensus 247 ---~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~ 323 (410)
+.-+...|+||.|.++...++.+|++++|.|.. +. +++|.+++|..|.+|+... .+|..++++-++.++..
T Consensus 157 FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSA-DA--r~WKKd~LRs~gV~ViEYe-~DY~~AVeeGRk~a~~D-- 230 (443)
T COG3048 157 FFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSA-DA--RAWKKDKLRSHGVTVVEYE-QDYGVAVEEGRKEAESD-- 230 (443)
T ss_pred HHHhheEeecccCccceehhhhhhhhcceEEEEecc-hH--HHHHHHHHHhcCceEEEec-chhhHHHHHhhhhhccC--
Confidence 112344899999999999999999999999964 33 3699999999999999984 55999999999988876
Q ss_pred CceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCCE-----EEEccCchhHHHHHHHHHhcC---CCeEEEEc
Q psy11239 324 NSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKY-----ILACVGGGSNALGIFYTFINS---NFKLVAIE 395 (410)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~-----iv~~vGtGg~~~Gi~~~~~~~---~~~vigVe 395 (410)
..+|++.... . .+ ...||...+..|..|+.+.|..+|. |.+|||.||.-.|++.++|.. +++++-+|
T Consensus 231 P~c~FiDDE~---S-~~-LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaE 305 (443)
T COG3048 231 PNCFFIDDEN---S-RT-LFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAE 305 (443)
T ss_pred CceEEecccc---h-hh-hhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEec
Confidence 3555553211 0 11 4579999999999999977776664 778999999999999999864 99999999
Q ss_pred cCCCC
Q psy11239 396 SGGIS 400 (410)
Q Consensus 396 ~~g~~ 400 (410)
|..|+
T Consensus 306 PthsP 310 (443)
T COG3048 306 PTHSP 310 (443)
T ss_pred CCCCh
Confidence 99887
No 172
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.36 E-value=3.2e-12 Score=118.67 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=132.3
Q ss_pred CCCCcCcccccccccc----C---CceEEEeeCCCCC-CCchhhhHHHHHHHH-----HHHhcC----------------
Q psy11239 13 GRPTPIYYCKNISNIL----K---GSKIFLKREDLNF-TGAHKMNNSIAQSLL-----AKFLKK---------------- 63 (410)
Q Consensus 13 ~~~TPl~~~~~l~~~~----~---~~~i~~K~E~~np-tGS~K~R~~~~~~~~-----~~~~~~---------------- 63 (410)
+..+||+..+..-+.+ . ..++|+|+++..| +||+|.|+-+.+++. +.+.+-
T Consensus 76 iIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~ 155 (443)
T COG3048 76 IIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFK 155 (443)
T ss_pred eeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHH
Confidence 4568888765443222 1 4489999999999 699999965544442 111110
Q ss_pred ----CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcc
Q psy11239 64 ----KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNI 139 (410)
Q Consensus 64 ----~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~ 139 (410)
+.-|...|+||.|.++-..++.+|++++|.|..++. ..|.+++|+.|.+|+..+ .+|..++++-++.++..
T Consensus 156 ~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr---~WKKd~LRs~gV~ViEYe-~DY~~AVeeGRk~a~~D- 230 (443)
T COG3048 156 DFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADAR---AWKKDKLRSHGVTVVEYE-QDYGVAVEEGRKEAESD- 230 (443)
T ss_pred HHHHhheEeecccCccceehhhhhhhhcceEEEEecchHH---HHHHHHHHhcCceEEEec-chhhHHHHHhhhhhccC-
Confidence 124555688999999999999999999999988876 599999999999999998 68999999998888765
Q ss_pred cCCcccccccccCccccccccccchhHHHHHHHhhhhcCC-----CccEEEEecCCCCceeecccccc
Q psy11239 140 LNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFY-----NKKYILACVGGGSNALGRPTPIY 202 (410)
Q Consensus 140 ~~~~~~~~~~~~~~p~~~~~~~g~~ti~~EI~~q~~~~~~-----~~d~iv~~vG~Gg~~~G~~tpl~ 202 (410)
+. .|++..-...+ .--||...+..+-.|....+. .|-.|..|||.||--.|+.-+|.
T Consensus 231 P~-c~FiDDE~S~~-----LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLK 292 (443)
T COG3048 231 PN-CFFIDDENSRT-----LFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLK 292 (443)
T ss_pred Cc-eEEecccchhh-----hhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhH
Confidence 23 33332211112 237899999988888765543 46779999999999999966653
No 173
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.06 E-value=11 Score=42.40 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=35.9
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCC--ccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGEND--YKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+++++ .++||+|.-+|..+.++|.+++++..... .+.....+......|.+++.
T Consensus 448 k~VvV-IGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~ 503 (944)
T PRK12779 448 KEVFV-IGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAV 503 (944)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEe
Confidence 45666 89999999999999999999888775421 11111223334456777543
No 174
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.66 E-value=24 Score=38.78 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=37.7
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCc-EEEEEcCCC--ccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLE-SIIYIGEND--YKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~-~~vv~p~~~--~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+++|+ .++||.|.-+|..+.++|.+ ++++.+... .+.....+..++..|.+++.
T Consensus 571 k~VvV-IGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 571 KKVAV-VGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred CcEEE-ECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 45666 89999999999999999998 888875421 11111223456678888764
No 175
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=89.87 E-value=25 Score=35.96 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=39.0
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCC--ccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGEND--YKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+++++ .++||.|.-+|..+.++|.+++++..... .+.....++.++..|.+++.
T Consensus 273 k~VvV-IGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 273 KSVVV-IGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred CeEEE-ECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 45666 89999999999999999999998876421 11112334567778888764
No 176
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=86.19 E-value=35 Score=38.89 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=35.3
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCc-EEEEEcCCCc--cchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLE-SIIYIGENDY--KRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~-~~vv~p~~~~--~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++||.|.-+|..+.++|.+ ++++.+.... +.....++.++..|.+++.
T Consensus 572 k~VvV-IGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~ 628 (1006)
T PRK12775 572 KSVVV-IGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFF 628 (1006)
T ss_pred CEEEE-ECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 45666 89999999999999999987 4555543211 1111223456667887654
No 177
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=82.93 E-value=8.1 Score=34.04 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCC
Q psy11239 258 HGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHP 337 (410)
Q Consensus 258 ~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 337 (410)
-|..+.++++.+|.+..--++..+.- ..-+..+...+..|..+ |+-.+..+.+.+..++.. ...-+.+.. ++
T Consensus 10 DG~~l~~~~~~~~~~~~~r~~g~dl~--~~ll~~~~~~~~~v~ll--G~~~~~~~~~~~~l~~~y-p~l~i~g~~---~g 81 (171)
T cd06533 10 DGIGVVWAARLLGGPLPERVTGSDLM--PALLELAAQKGLRVFLL--GAKPEVLEKAAERLRARY-PGLKIVGYH---HG 81 (171)
T ss_pred CcHHHHHHHHHcCCCCCcccCcHHHH--HHHHHHHHHcCCeEEEE--CCCHHHHHHHHHHHHHHC-CCcEEEEec---CC
Confidence 46788899999999844444332221 23344455567888887 554555555555555542 345454433 34
Q ss_pred ChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhH
Q psy11239 338 YPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSN 376 (410)
Q Consensus 338 ~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~ 376 (410)
|-.... -.+|++++. ...||.|+++.|+---
T Consensus 82 ~~~~~~------~~~i~~~I~--~~~pdiv~vglG~PkQ 112 (171)
T cd06533 82 YFGPEE------EEEIIERIN--ASGADILFVGLGAPKQ 112 (171)
T ss_pred CCChhh------HHHHHHHHH--HcCCCEEEEECCCCHH
Confidence 321111 124677776 3479999999998665
No 178
>PRK12831 putative oxidoreductase; Provisional
Probab=82.38 E-value=64 Score=33.24 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=37.8
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCC--ccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGEND--YKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~--~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+++++ .++||.|.-+|..+.++|.+++++..... .+.....++.++..|.+++.
T Consensus 282 k~VvV-IGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 282 KKVAV-VGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred CeEEE-ECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 46666 89999999999999999999888875431 11111233455667877664
No 179
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=81.75 E-value=84 Score=35.77 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=26.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEecc
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGE 96 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 96 (410)
.+++. ++|..|.+.|+..++.|++++||=..
T Consensus 541 kVaII-GgGPAGLsAA~~Lar~G~~VtV~Ek~ 571 (1019)
T PRK09853 541 KVAVI-GAGPAGLAAAYFLARAGHPVTVFERE 571 (1019)
T ss_pred cEEEE-CCCHHHHHHHHHHHHcCCeEEEEecc
Confidence 46665 99999999999999999999988533
No 180
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=79.18 E-value=11 Score=36.64 Aligned_cols=185 Identities=15% Similarity=0.208 Sum_probs=94.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCC-CHHHHHHHHHHHHhhcccCCc
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEAIKDWSNNILNSH 143 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g-~~~~~~~~~~~~~~~~~~~~~ 143 (410)
++++. ++|-.|.+.|.++++++++++++.....+..++.+...+..|-.. +.+ .-.+-++...+.+... +..
T Consensus 5 DviII-G~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~----~~~~~g~~L~~~~~~~a~~~--~~~ 77 (305)
T COG0492 5 DVIII-GGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGF----PGGILGPELMEQMKEQAEKF--GVE 77 (305)
T ss_pred eEEEE-CCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCC----ccCCchHHHHHHHHHHHhhc--CeE
Confidence 46665 899999999999999999988888665442111111111111110 100 1223333333333221 001
Q ss_pred ccccccccCccccccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeecccccccccccccccc-CceeEEeecC
Q psy11239 144 YLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILK-GSKIFLKRED 222 (410)
Q Consensus 144 ~~~~~~~~~~p~~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~-~~~v~~K~e~ 222 (410)
+ .. ........... .++|.-+.. ...-++||+++|.+....+++ +- .+..+ ++.-+.-++.
T Consensus 78 ~-------~~-~~v~~v~~~~~-~F~v~t~~~--~~~ak~vIiAtG~~~~~~~~~-~e------~e~~g~gv~yc~~cdg 139 (305)
T COG0492 78 I-------VE-DEVEKVELEGG-PFKVKTDKG--TYEAKAVIIATGAGARKLGVP-GE------EEFEGKGVSYCATCDG 139 (305)
T ss_pred E-------EE-EEEEEEeecCc-eEEEEECCC--eEEEeEEEECcCCcccCCCCC-cc------hhhcCCceEEeeecCc
Confidence 1 00 00000111111 122221111 123578888888766655542 00 01111 1111111111
Q ss_pred CCCCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHC
Q psy11239 223 LNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295 (410)
Q Consensus 223 ~~ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~ 295 (410)
- -.+ +.+++ .++||++.--|.+-...+-+++++.+.+.....+..+++++..
T Consensus 140 -----~--------------~~~-k~v~V-iGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~ 191 (305)
T COG0492 140 -----F--------------FKG-KDVVV-IGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKN 191 (305)
T ss_pred -----c--------------ccC-CeEEE-EcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhc
Confidence 0 122 25666 8999999999999999999999999876554445666677765
No 181
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=78.36 E-value=10 Score=28.45 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=27.8
Q ss_pred eEEecCchHHHHHHHHHHHHcCCcEEEEEcCCC
Q psy11239 249 IICETGAGMHGVSTATSCCLLNLESIIYIGEND 281 (410)
Q Consensus 249 ~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~ 281 (410)
+++ .++|..|.-+|.+.+.+|.+++++.+.+.
T Consensus 2 vvV-iGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 2 VVV-IGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEE-ESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred EEE-ECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 445 89999999999999999999999997643
No 182
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=77.62 E-value=79 Score=33.41 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=33.1
Q ss_pred CceEEecCchHHHHHHHHHHHHcC-CcEEEEEcCC--CccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLN-LESIIYIGEN--DYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G-~~~~vv~p~~--~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++||.+.-.+..+.++| -+.+++.... ..+.....+......|.+++.
T Consensus 268 k~v~V-iGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~~a~~~GVki~~ 324 (564)
T PRK12771 268 KRVVV-IGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEALREGVEINW 324 (564)
T ss_pred CCEEE-ECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 45555 779999999999889998 4455554321 111112334445557888764
No 183
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=77.40 E-value=1.1e+02 Score=33.04 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=35.3
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCc-EEEEEcCCC--ccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLE-SIIYIGEND--YKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~-~~vv~p~~~--~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+++++ .++||.|.-+|..+.++|.+ ++++.+... .+.....+......|.+++.
T Consensus 324 k~VvV-IGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~ 380 (652)
T PRK12814 324 KKVVV-IGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRE 380 (652)
T ss_pred CeEEE-ECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEe
Confidence 45666 89999999999999999975 777765421 11111233444457877654
No 184
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=76.29 E-value=9.3 Score=34.97 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=40.3
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
|++...+|+.|..++-+-...+.++++++....+ .....++..|++++..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~----~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS----DRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH----HHHHHHHHTTTEEEES-
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch----hhhhhhhcccceEeecc
Confidence 3455567999999999999999999999876533 45678889999988554
No 185
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=74.24 E-value=20 Score=31.56 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCC
Q psy11239 258 HGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHP 337 (410)
Q Consensus 258 ~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 337 (410)
-|..+.++++.+|.++---++..+.- ..-+..+...|-.|..+ |+-.+..+++.+.+++.. ...-+++.. ++
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~--~~l~~~~~~~~~~ifll--G~~~~~~~~~~~~l~~~y-P~l~ivg~~---~g 83 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLF--PDLLRRAEQRGKRIFLL--GGSEEVLEKAAANLRRRY-PGLRIVGYH---HG 83 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHH--HHHHHHHHHcCCeEEEE--eCCHHHHHHHHHHHHHHC-CCeEEEEec---CC
Confidence 46788889999998874333221211 23344555667788887 443555566666655552 234344333 33
Q ss_pred ChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhH
Q psy11239 338 YPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSN 376 (410)
Q Consensus 338 ~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~ 376 (410)
|.+. .--.+|++++. ...||.|+++.|+--.
T Consensus 84 ~f~~------~~~~~i~~~I~--~~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 84 YFDE------EEEEAIINRIN--ASGPDIVFVGLGAPKQ 114 (172)
T ss_pred CCCh------hhHHHHHHHHH--HcCCCEEEEECCCCHH
Confidence 3111 11246777776 3468999999998654
No 186
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=73.51 E-value=1.4e+02 Score=32.26 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=35.3
Q ss_pred CceEEecCchHHHHHHHHHHHHcCC-cEEEEEcCCC--ccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNL-ESIIYIGEND--YKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~-~~~vv~p~~~--~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++||.|.-+|..+.++|- +++++...+. .+.....+..++..|.+++.
T Consensus 469 k~VvV-IGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~ 525 (654)
T PRK12769 469 LNVVV-LGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEF 525 (654)
T ss_pred CeEEE-ECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEe
Confidence 35665 7899999999999999997 4776664321 11112334556677887664
No 187
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=72.96 E-value=1.2e+02 Score=31.12 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=37.2
Q ss_pred CceEEecCchHHHHHHHHHHHHcCC-cEEEEEcCCC--ccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNL-ESIIYIGEND--YKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~-~~~vv~p~~~--~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+++++ .++||.|.-+|..+.++|. +++++.+... .+........++..|.+++.
T Consensus 274 ~~VvV-iGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 274 KRVVV-IGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred CeEEE-ECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence 45666 8899999999999999998 6787765321 11112334566778888764
No 188
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=70.03 E-value=29 Score=29.90 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=50.9
Q ss_pred CCchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCcc------chhhhHHHHHHCCCE
Q psy11239 225 FTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYK------RQNINVKKIKLLGGT 298 (410)
Q Consensus 225 ptgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~------~~~~~~~~~~~~Ga~ 298 (410)
|.--+-++.+...+..|.+.+.+.+|+.+|+|.+++-++-+..- .+++++|..+.-.. -...-...++..|++
T Consensus 7 pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 33345566666677889999999998888999988776654332 28888877432111 123445677778988
Q ss_pred EEE
Q psy11239 299 VYL 301 (410)
Q Consensus 299 v~~ 301 (410)
|..
T Consensus 86 v~~ 88 (186)
T COG1751 86 VLT 88 (186)
T ss_pred eee
Confidence 875
No 189
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=68.20 E-value=60 Score=30.11 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe------CCCHHHHHHHHHHHHHccCCCceEEecCC
Q psy11239 259 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ------YGNLKEAMNEAIKDWSNNILNSHYLIGTA 332 (410)
Q Consensus 259 g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~------~g~~~~~~~~a~~~~~~~~~~~~~~~~~~ 332 (410)
-.+++.+-+++|.+++++=- +.- -.|++++ +|.|=..|- .|. ..+.+|+-.-++. ...|+++-.
T Consensus 20 tAnig~aLA~~GkKv~liD~--DiG--LRNLDli--mGlE~RiVYd~vdVi~g~--~~l~QALIkDKr~--~nL~lLPAs 89 (272)
T COG2894 20 TANIGTALAQLGKKVVLIDF--DIG--LRNLDLI--MGLENRIVYDLVDVIEGE--ATLNQALIKDKRL--ENLFLLPAS 89 (272)
T ss_pred hHHHHHHHHHcCCeEEEEec--CcC--chhhhhh--hcccceeeeeehhhhcCc--cchhhHhhccccC--CceEecccc
Confidence 33444555678988877642 232 3455554 899843331 121 1223332221222 345555321
Q ss_pred CCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC----CCeEEEEccCCCCcC
Q psy11239 333 SGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS----NFKLVAIESGGISKK 402 (410)
Q Consensus 333 ~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~----~~~vigVe~~g~~~~ 402 (410)
.. ..-+....++. .++++++.+ ..+|+|+|=+ -+||-++|+.. +--++.+.|+-|++.
T Consensus 90 Qt-rdKdalt~E~v----~~vv~eL~~--~~fDyIi~Ds-----PAGIE~G~~~A~~~Ad~AiVVtnPEvSsVR 151 (272)
T COG2894 90 QT-RDKDALTPEGV----KKVVNELKA--MDFDYIIIDS-----PAGIEQGFKNAVYFADEAIVVTNPEVSSVR 151 (272)
T ss_pred cc-cCcccCCHHHH----HHHHHHHHh--cCCCEEEecC-----cchHHHHHHhhhhccceEEEEcCCCccccc
Confidence 11 00011123343 356666652 4699999843 45666666543 788888999988764
No 190
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.62 E-value=45 Score=30.46 Aligned_cols=108 Identities=21% Similarity=0.162 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCC-EEEEEeCCCHHHHHHHH
Q psy11239 53 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGG-TVYLVQYGNLKEAMNEA 131 (410)
Q Consensus 53 ~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA-~v~~v~~g~~~~~~~~~ 131 (410)
.......+.+++..|.+-++| .|...|..|+..| .|+.-+..++....=.+.++.+|- +|.... ||-
T Consensus 62 A~m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~-gDG------- 129 (209)
T COG2518 62 ARMLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRH-GDG------- 129 (209)
T ss_pred HHHHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEE-CCc-------
Confidence 333345556666767664443 4556677777777 555544333211112334788888 454443 330
Q ss_pred HHHHhhcccCCcccccccccCcccccc-ccccchhHHHHHHHhhhhcCCCccEEEEecCC
Q psy11239 132 IKDWSNNILNSHYLIGTASGPHPYPTI-VRDFQSIIGYEIHQQLNFNFYNKKYILACVGG 190 (410)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~ 190 (410)
.. +.....|||.. +.++..++-.-+++|+..+| .+|+|+|+
T Consensus 130 ---~~-----------G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gG----rlv~PvG~ 171 (209)
T COG2518 130 ---SK-----------GWPEEAPYDRIIVTAAAPEVPEALLDQLKPGG----RLVIPVGS 171 (209)
T ss_pred ---cc-----------CCCCCCCcCEEEEeeccCCCCHHHHHhcccCC----EEEEEEcc
Confidence 00 11224788866 35666676777899986444 68899983
No 191
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=67.22 E-value=23 Score=34.37 Aligned_cols=47 Identities=17% Similarity=0.041 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 73 GN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+|..+++..+++++|+.++++.|+..... +.-...++..|+++..++
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~-~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRMP-KEILEELKAKGIKVRETE 208 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccCC-HHHHHHHHHcCCEEEEEC
Confidence 69999999999999999999999975211 233456667899887764
No 192
>KOG0025|consensus
Probab=67.21 E-value=23 Score=34.04 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCCceEEecCchH--HHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 233 NSIAQSLLAKFLKKKRIICETGAGM--HGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 233 ~a~~~~~~a~~~g~~~~v~~~ssGN--~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
.|+.|+..-.++..+..|+ --++| -|+++--.|+.+|++.+=++.+.+ .. ..-.++++.+||+-++.+
T Consensus 147 TAyrmL~dfv~L~~GD~vI-QNganS~VG~~ViQlaka~GiktinvVRdR~-~i-eel~~~Lk~lGA~~ViTe 216 (354)
T KOG0025|consen 147 TAYRMLKDFVQLNKGDSVI-QNGANSGVGQAVIQLAKALGIKTINVVRDRP-NI-EELKKQLKSLGATEVITE 216 (354)
T ss_pred HHHHHHHHHHhcCCCCeee-ecCcccHHHHHHHHHHHHhCcceEEEeecCc-cH-HHHHHHHHHcCCceEecH
Confidence 4555555555556555555 55555 566666789999999999997642 22 244567888999988864
No 193
>KOG0025|consensus
Probab=66.72 E-value=26 Score=33.66 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=44.2
Q ss_pred HhcCCceEEEeCc-cHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 60 FLKKKRIICETGA-GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 60 ~~~~~~~v~~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
.+.+++.|+--++ +--|+++--.|+.+||+.+=|+.....- .+-.++++.+||+-++++
T Consensus 157 ~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~i--eel~~~Lk~lGA~~ViTe 216 (354)
T KOG0025|consen 157 QLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNI--EELKKQLKSLGATEVITE 216 (354)
T ss_pred hcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccH--HHHHHHHHHcCCceEecH
Confidence 4556777776333 4467778889999999999999775332 355778899999998886
No 194
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=65.69 E-value=41 Score=32.00 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=43.4
Q ss_pred ceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccCCC
Q psy11239 325 SHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGGI 399 (410)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~g~ 399 (410)
.+|+ +...+ -||.....+--....+||++-+.+ ..++.+|++|-|.++++. ..+++. ++-|+||.|.-.
T Consensus 33 ~iY~-~D~a~-~PYG~ks~e~I~~~~~~i~~~l~~--~~ik~lVIACNTASa~al--~~LR~~~~iPVvGviPaik 102 (269)
T COG0796 33 IIYV-GDTAR-FPYGEKSEEEIRERTLEIVDFLLE--RGIKALVIACNTASAVAL--EDLREKFDIPVVGVIPAIK 102 (269)
T ss_pred EEEE-ecCCC-CCCCCCCHHHHHHHHHHHHHHHHH--cCCCEEEEecchHHHHHH--HHHHHhCCCCEEEeccchH
Confidence 3444 43333 677322122222345788888764 349999999999887773 445544 899999987643
No 195
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=65.05 E-value=43 Score=29.70 Aligned_cols=101 Identities=7% Similarity=0.013 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCC
Q psy11239 259 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPY 338 (410)
Q Consensus 259 g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 338 (410)
|..+.++++.+|.+..--++. ++--..-+..+...|..|..+ |+-.+..+.+.+..+++- ...-+.+. ++|
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G--~dl~~~l~~~~~~~~~~vfll--G~~~~v~~~~~~~l~~~y-P~l~i~g~----~g~ 83 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAG--PDLMEELCQRAGKEKLPIFLY--GGKPDVLQQLKVKLIKEY-PKLKIVGA----FGP 83 (177)
T ss_pred cHHHHHHHHHcCCCCCCccCh--HHHHHHHHHHHHHcCCeEEEE--CCCHHHHHHHHHHHHHHC-CCCEEEEE----CCC
Confidence 567888899998764333332 111112333444567788887 544555566666555542 23333332 333
Q ss_pred hhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhH
Q psy11239 339 PTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSN 376 (410)
Q Consensus 339 ~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~ 376 (410)
-+. . --.+|++++.+ ..||.++++.|+=--
T Consensus 84 f~~-~-----~~~~i~~~I~~--s~~dil~VglG~PkQ 113 (177)
T TIGR00696 84 LEP-E-----ERKAALAKIAR--SGAGIVFVGLGCPKQ 113 (177)
T ss_pred CCh-H-----HHHHHHHHHHH--cCCCEEEEEcCCcHh
Confidence 110 1 11357777763 468999999998553
No 196
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=62.15 E-value=81 Score=31.43 Aligned_cols=107 Identities=13% Similarity=0.171 Sum_probs=57.8
Q ss_pred CCCchhhHHHHHHHHHHHHH---cCCCce--EEecCchHHHHHHHHHHH---HcCCcEEEEEcCCCccchhhhHHHHHHC
Q psy11239 224 NFTGAHKMNNSIAQSLLAKF---LKKKRI--ICETGAGMHGVSTATSCC---LLNLESIIYIGENDYKRQNINVKKIKLL 295 (410)
Q Consensus 224 ~ptgS~K~R~a~~~~~~a~~---~g~~~~--v~~~ssGN~g~a~A~~a~---~~G~~~~vv~p~~~~~~~~~~~~~~~~~ 295 (410)
.+.|....|.+......... ...+.+ ++ .+|+.+|..++..+- .-| -.|++|+.... .-...++.+
T Consensus 67 ~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~i-T~Ga~~al~~~~~~l~~~~pG--d~Vlv~~P~y~---~~~~~~~~~ 140 (396)
T PRK09257 67 PIEGLAAYRQAVQELLFGADSPALAAGRVATVQ-TPGGTGALRVGADFLKRAFPD--AKVWVSDPTWP---NHRAIFEAA 140 (396)
T ss_pred CCCCCHHHHHHHHHHhcCCCCcccccCeEEEEe-cCCccHHHHHHHHHHHHhCCC--CeEEECCCCcc---cHHHHHHHc
Confidence 34577788888666542221 123444 44 666688877775332 234 34666654444 445677889
Q ss_pred CCEEEEEeC---CC---HHHHHHHHHHHHHccCCCceEEecCCCCCCCC
Q psy11239 296 GGTVYLVQY---GN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPY 338 (410)
Q Consensus 296 Ga~v~~v~~---g~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 338 (410)
|++++.++- .+ --+.+..+.+.... ....|++++..||.+.
T Consensus 141 g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~--~~~~~i~~~p~NPTG~ 187 (396)
T PRK09257 141 GLEVKTYPYYDAATKGLDFDAMLADLSQAPA--GDVVLLHGCCHNPTGA 187 (396)
T ss_pred CCcEEEEeccccccCccCHHHHHHHHHhCCC--CCEEEEeCCCCCCCCC
Confidence 999998862 11 11233333322111 1356776776665543
No 197
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=62.05 E-value=23 Score=34.33 Aligned_cols=45 Identities=18% Similarity=0.055 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEcCCC-ccchhhhHHHHHHCCCEEEEE
Q psy11239 256 GMHGVSTATSCCLLNLESIIYIGEND-YKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 256 GN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+|.++++..+++++|++++++.|++- .+ ...+..++..|+++...
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~--~~~~~~~~~~G~~v~~~ 207 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRMP--KEILEELKAKGIKVRET 207 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccCC--HHHHHHHHHcCCEEEEE
Confidence 58999999999999999999999763 33 23345566678887664
No 198
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=62.05 E-value=29 Score=33.47 Aligned_cols=109 Identities=14% Similarity=0.026 Sum_probs=58.7
Q ss_pred hcCCCCCCCcCccccccccccCCceEEE-eeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHc
Q psy11239 8 YNPKKGRPTPIYYCKNISNILKGSKIFL-KREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLL 86 (410)
Q Consensus 8 ~~~~~~~~TPl~~~~~l~~~~~~~~i~~-K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~ 86 (410)
++.+.+|...-..+..|.+.- +..||= -.+...|+=..-|-..+.+ .....+...++...-+.|.+.++-.+|+++
T Consensus 100 ~D~I~~R~~~~~~ve~lA~~s-~VPViNgLtD~~HP~Q~LADl~Ti~E--~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~ 176 (310)
T COG0078 100 VDAIMIRGFSHETLEELAKYS-GVPVINGLTDEFHPCQALADLMTIKE--HFGSLKGLKLAYVGDGNNVANSLLLAAAKL 176 (310)
T ss_pred hheEEEecccHHHHHHHHHhC-CCceEcccccccCcHHHHHHHHHHHH--hcCcccCcEEEEEcCcchHHHHHHHHHHHh
Confidence 344444444433445555443 333433 3334455543333321111 111122234555545689999999999999
Q ss_pred CCcEEEEeccCCccccchhHHH----HHhcCCEEEEEe
Q psy11239 87 NLESIIYIGENDYKRQNINVKK----IKLLGGTVYLVQ 120 (410)
Q Consensus 87 G~~~~iv~p~~~~~~~~~k~~~----~~~~GA~v~~v~ 120 (410)
|+.+++..|+..-.. +.-... .+..|+++..++
T Consensus 177 G~dv~ia~Pk~~~p~-~~~~~~a~~~a~~~g~~i~~t~ 213 (310)
T COG0078 177 GMDVRIATPKGYEPD-PEVVEKAKENAKESGGKITLTE 213 (310)
T ss_pred CCeEEEECCCcCCcC-HHHHHHHHHHHHhcCCeEEEec
Confidence 999999999965421 111112 234488888885
No 199
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=61.65 E-value=21 Score=29.11 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 75 HGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 75 ~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
-|......|+.+|.+.+++. .. +.|++.++.+||+.+...
T Consensus 2 vG~~a~q~ak~~G~~vi~~~--~~----~~k~~~~~~~Ga~~~~~~ 41 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATD--RS----EEKLELAKELGADHVIDY 41 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEE--SS----HHHHHHHHHTTESEEEET
T ss_pred hHHHHHHHHHHcCCEEEEEE--CC----HHHHHHHHhhcccccccc
Confidence 36778888999994444333 22 368999999999887665
No 200
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=59.92 E-value=45 Score=24.83 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=27.9
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCc
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDY 99 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~ 99 (410)
+++- ++|..|.-+|.+.+.+|.+++++......
T Consensus 2 vvVi-GgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVI-GGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEE-SSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEE-CcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 3453 89999999999999999999999876544
No 201
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=59.71 E-value=45 Score=30.37 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=37.4
Q ss_pred EecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 251 CETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 251 ~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+...+|+.|..++.+....+.++++++... + ......++..|++++..+
T Consensus 3 V~GatG~~G~~v~~~L~~~~~~V~~l~R~~--~--~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 3 VTGATGNQGRSVVRALLSAGFSVRALVRDP--S--SDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EETTTSHHHHHHHHHHHHTTGCEEEEESSS--H--HHHHHHHHHTTTEEEES-
T ss_pred EECCccHHHHHHHHHHHhCCCCcEEEEecc--c--hhhhhhhhcccceEeecc
Confidence 337889999999999999999999999643 2 234556777899887543
No 202
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=59.29 E-value=3.2e+02 Score=31.29 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=26.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEec
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIG 95 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p 95 (410)
.+++. ++|-.|.+.|+..++.|++++||=+
T Consensus 539 kVaII-GGGPAGLSAA~~LAr~G~~VTV~Ek 568 (1012)
T TIGR03315 539 KVAVI-GAGPAGLSAGYFLARAGHPVTVFEK 568 (1012)
T ss_pred cEEEE-CCCHHHHHHHHHHHHCCCeEEEEec
Confidence 46665 9999999999999999999998843
No 203
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=58.90 E-value=26 Score=34.64 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=44.2
Q ss_pred HHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeC
Q psy11239 240 LAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 304 (410)
Q Consensus 240 ~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~ 304 (410)
.++..|.+..+. .+||..+..+|+.+..++-.-.|++|.-+.. .....+...|+++++++-
T Consensus 34 ~a~~~g~~~~~~-~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~---~~~~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 34 FAEYFGVKYAVA-VSSGTSALHLALRALGLGPGDEVIVPAYTFP---ATASAILWAGAEPVFVDI 94 (363)
T ss_dssp HHHHHTSSEEEE-ESSHHHHHHHHHHHTTGGTTSEEEEESSS-T---HHHHHHHHTT-EEEEE-B
T ss_pred HHHHhCCCeEEE-eCChhHHHHHHHHhcCCCcCceEecCCCcch---HHHHHHHHhccEEEEEec
Confidence 455677778777 9999999999988844444477888865554 567788889999999874
No 204
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=58.10 E-value=68 Score=28.65 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=39.2
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSN 320 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~ 320 (410)
+.++=.|||-+|.++|..+...|..++++......+ . -.+.+++.+ .+.++..+...+.+.+
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~---~------p~~~~~i~v--~sa~em~~~~~~~~~~ 82 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP---P------PPGVKVIRV--ESAEEMLEAVKELLPS 82 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------------TTEEEEE---SSHHHHHHHHHHHGGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc---c------cccceEEEe--cchhhhhhhhccccCc
Confidence 566778999999999999999999999998643222 0 146677776 3355556655555544
No 205
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=58.06 E-value=35 Score=33.41 Aligned_cols=49 Identities=22% Similarity=0.227 Sum_probs=36.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
.+++. ++|..|...+..++.+|.+.+++.....+ +.|++.++.+||+.+
T Consensus 175 ~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~---~~~~~~~~~~Ga~~v 223 (355)
T cd08230 175 RALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPP---DPKADIVEELGATYV 223 (355)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCC---HHHHHHHHHcCCEEe
Confidence 35554 67999999999999999975555443212 368889999999964
No 206
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=57.96 E-value=11 Score=32.66 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=25.7
Q ss_pred ecCchHHHHHHHHHHHHcCCcEEEEEcC
Q psy11239 252 ETGAGMHGVSTATSCCLLNLESIIYIGE 279 (410)
Q Consensus 252 ~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 279 (410)
..++||+|.|+|...+..|.+++++.++
T Consensus 4 ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 4 VIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred EECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 3899999999999999999999999864
No 207
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=57.93 E-value=29 Score=30.12 Aligned_cols=53 Identities=17% Similarity=0.180 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHHcCCcEEEEeccC--CccccchhH----HHHHhcCCEEEEEeCCCHHHHH
Q psy11239 73 GMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINV----KKIKLLGGTVYLVQYGNLKEAM 128 (410)
Q Consensus 73 GN~g~a~A~~a~~~G~~~~iv~p~~--~~~~~~~k~----~~~~~~GA~v~~v~~g~~~~~~ 128 (410)
+|...|++..++++|..++++.|+. .+.. +.-+ +.....|.++..++ +..+++
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~-~~~~~~~~~~~~~~g~~i~~~~--~~~e~l 71 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPD-PEVLEKAKKNAKKNGGKITITD--DIEEAL 71 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHH-HHHHHHHHHHHHHHTTEEEEES--SHHHHH
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCC-HHHHHHHHHHHHHhCCCeEEEe--CHHHhc
Confidence 8999999999999999999999997 3320 0111 23455689888884 444443
No 208
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=57.86 E-value=40 Score=32.54 Aligned_cols=54 Identities=17% Similarity=0.089 Sum_probs=37.0
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHH----HHCCCEEEEE
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKI----KLLGGTVYLV 302 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~----~~~Ga~v~~v 302 (410)
+++-...+.|-+.++-.+|+++|+.+++..|++..+. ..-+..+ +..|+++..+
T Consensus 155 k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~-~~~~~~a~~~a~~~g~~i~~t 212 (310)
T COG0078 155 KLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPD-PEVVEKAKENAKESGGKITLT 212 (310)
T ss_pred EEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcC-HHHHHHHHHHHHhcCCeEEEe
Confidence 4444244458999999999999999999999864332 2222222 3348888876
No 209
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=57.52 E-value=45 Score=29.26 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccc
Q psy11239 76 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPY 155 (410)
Q Consensus 76 g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 155 (410)
|..+..+++.+|.++.--++..+- .+.-++.+...|-.|..+. +-.+..+++.+.+.+..++. -+.+. .+||
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl--~~~l~~~~~~~~~~ifllG--~~~~~~~~~~~~l~~~yP~l-~ivg~---~~g~ 84 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDL--FPDLLRRAEQRGKRIFLLG--GSEEVLEKAAANLRRRYPGL-RIVGY---HHGY 84 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHH--HHHHHHHHHHcCCeEEEEe--CCHHHHHHHHHHHHHHCCCe-EEEEe---cCCC
Confidence 578899999999888433333211 1244556667788898885 33455555555555442211 11121 2333
Q ss_pred cccccccchhHHHHHHHhhhhcCCCccEEEEecC
Q psy11239 156 PTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVG 189 (410)
Q Consensus 156 ~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG 189 (410)
.++ .--.+|+++... ..||.|+++.|
T Consensus 85 f~~------~~~~~i~~~I~~--~~pdiv~vglG 110 (172)
T PF03808_consen 85 FDE------EEEEAIINRINA--SGPDIVFVGLG 110 (172)
T ss_pred CCh------hhHHHHHHHHHH--cCCCEEEEECC
Confidence 211 112344444332 35899988765
No 210
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=55.44 E-value=52 Score=31.00 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=35.5
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++ .++|..|...+..|+.+|.+.++++.. . +.|..+.+.+||+.+.
T Consensus 124 VlV-~G~G~vG~~~~~~ak~~G~~~Vi~~~~-~----~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 124 VLV-VGAGMLGLTAAAAAAAAGAARVVAADP-S----PDRRELALSFGATALA 170 (280)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCCEEEEECC-C----HHHHHHHHHcCCcEec
Confidence 455 477999999999999999985555522 2 3688899999997654
No 211
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=55.27 E-value=56 Score=27.62 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=37.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccC-CccccchhHHHHHhcCCEEEEEe
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGEN-DYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
.+++..+++.-|+++|..-...|-+.++++..+ ..+.....+..++..|.++..++
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~ 58 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIE 58 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccc
Confidence 356666779999999999999877666666554 11112234455677788777665
No 212
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=54.98 E-value=16 Score=31.53 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=24.4
Q ss_pred eCccHHHHHHHHHHHHcCCcEEEEecc
Q psy11239 70 TGAGMHGVSTATSCCLLNLESIIYIGE 96 (410)
Q Consensus 70 ~ssGN~g~a~A~~a~~~G~~~~iv~p~ 96 (410)
.++||.|.++|...+..|.+++++.++
T Consensus 5 iGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 5 IGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp ESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred ECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 489999999999999999888888765
No 213
>PRK07109 short chain dehydrogenase; Provisional
Probab=52.91 E-value=73 Score=31.09 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=36.3
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++..+|--|.++|......|.+++++.... +........++.+|++++.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~--~~l~~~~~~l~~~g~~~~~v~ 63 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGE--EGLEALAAEIRAAGGEALAVV 63 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCcEEEEE
Confidence 4567766678899999999999999877665321 111223445667788776554
No 214
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=52.84 E-value=50 Score=32.58 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeC
Q psy11239 53 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121 (410)
Q Consensus 53 ~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~ 121 (410)
++-..++..+.+..+. ++||..+..+|+.+..++=--.|.+|.-+. +.-...+...|++++.++-
T Consensus 30 fE~~~a~~~g~~~~~~-~~sgt~Al~~al~~l~~~~gdeVi~p~~t~---~~~~~ai~~~G~~pv~~Di 94 (363)
T PF01041_consen 30 FEKEFAEYFGVKYAVA-VSSGTSALHLALRALGLGPGDEVIVPAYTF---PATASAILWAGAEPVFVDI 94 (363)
T ss_dssp HHHHHHHHHTSSEEEE-ESSHHHHHHHHHHHTTGGTTSEEEEESSS----THHHHHHHHTT-EEEEE-B
T ss_pred HHHHHHHHhCCCeEEE-eCChhHHHHHHHHhcCCCcCceEecCCCcc---hHHHHHHHHhccEEEEEec
Confidence 4444566677777777 499999999999984333337888888766 4778999999999999864
No 215
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=52.82 E-value=1.1e+02 Score=28.23 Aligned_cols=60 Identities=12% Similarity=-0.006 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCC--ceEEEeCcc---HHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCC
Q psy11239 53 AQSLLAKFLKKK--RIICETGAG---MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGG 114 (410)
Q Consensus 53 ~~~~~~~~~~~~--~~v~~~ssG---N~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA 114 (410)
.+++-+.+-|.. -+|.++|+| .+-++||.+|+.-|=+.++++|+.... .+-...|..+|.
T Consensus 30 aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~--~~~~~~l~~~~~ 94 (218)
T PF07279_consen 30 AEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSL--SEYKKALGEAGL 94 (218)
T ss_pred HHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhH--HHHHHHHhhccc
Confidence 344444444433 345444554 378999999999999999999985442 244555655564
No 216
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=52.33 E-value=4.1e+02 Score=30.36 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=35.5
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
+.+++ .++|+.+..+|...+.+|.+.+.++.... .........++..|.+++
T Consensus 318 k~VvV-iG~G~~g~e~A~~L~~~G~~vV~vv~~~~-~~~~~l~~~L~~~GV~i~ 369 (985)
T TIGR01372 318 KRIVV-ATNNDSAYRAAADLLAAGIAVVAIIDARA-DVSPEARAEARELGIEVL 369 (985)
T ss_pred CeEEE-ECCCHHHHHHHHHHHHcCCceEEEEccCc-chhHHHHHHHHHcCCEEE
Confidence 45666 89999999999999999987666663321 111234556777777765
No 217
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=51.80 E-value=53 Score=26.61 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 259 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 259 g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
|......|+.+|.+.+++.+ + ..+++.++.+||+.+...
T Consensus 3 G~~a~q~ak~~G~~vi~~~~--~----~~k~~~~~~~Ga~~~~~~ 41 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR--S----EEKLELAKELGADHVIDY 41 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES--S----HHHHHHHHHTTESEEEET
T ss_pred HHHHHHHHHHcCCEEEEEEC--C----HHHHHHHHhhcccccccc
Confidence 66777788999944444442 2 256778888998877653
No 218
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=51.13 E-value=86 Score=30.63 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=37.4
Q ss_pred cCCc-eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239 62 KKKR-IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 62 ~~~~-~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
+++. +++...+|.-|...-..|+.+|. ++|++..+ .+|.+.++.+||+.++.
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s-----~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSS-----SEKLELLKELGADHVIN 193 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecC-----HHHHHHHHhcCCCEEEc
Confidence 4444 66655679999999999999999 44444332 25777999999986654
No 219
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=50.98 E-value=75 Score=27.82 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCccc
Q psy11239 76 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPY 155 (410)
Q Consensus 76 g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 155 (410)
|..+.++++.+|.+..--++..+- .+.=.+.+...+..|..+. +-.+..+.+.+.+.+..++.. +.+ ..+||
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl--~~~ll~~~~~~~~~v~llG--~~~~~~~~~~~~l~~~yp~l~-i~g---~~~g~ 82 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDL--MPALLELAAQKGLRVFLLG--AKPEVLEKAAERLRARYPGLK-IVG---YHHGY 82 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHH--HHHHHHHHHHcCCeEEEEC--CCHHHHHHHHHHHHHHCCCcE-EEE---ecCCC
Confidence 578899999999984434433221 1233445566688899884 434445555554444322211 111 12334
Q ss_pred cccccccchhHHHHHHHhhhhcCCCccEEEEecC
Q psy11239 156 PTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVG 189 (410)
Q Consensus 156 ~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG 189 (410)
... .--.+|+++... ..||.|+++.|
T Consensus 83 ~~~------~~~~~i~~~I~~--~~pdiv~vglG 108 (171)
T cd06533 83 FGP------EEEEEIIERINA--SGADILFVGLG 108 (171)
T ss_pred CCh------hhHHHHHHHHHH--cCCCEEEEECC
Confidence 221 111224444332 35899998765
No 220
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=50.95 E-value=34 Score=33.98 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=27.7
Q ss_pred cCchHHHHHHHHHHHHcCCcEEEEEcCCCcc
Q psy11239 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYK 283 (410)
Q Consensus 253 ~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~ 283 (410)
-++|..|+.++.+|+.+|++++++-|..+.+
T Consensus 7 lGGGQLgrMm~~aa~~lG~~v~vLdp~~~~P 37 (375)
T COG0026 7 LGGGQLGRMMALAAARLGIKVIVLDPDADAP 37 (375)
T ss_pred EcCcHHHHHHHHHHHhcCCEEEEecCCCCCc
Confidence 7899999999999999999999999875544
No 221
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=50.45 E-value=94 Score=30.81 Aligned_cols=59 Identities=8% Similarity=0.115 Sum_probs=38.2
Q ss_pred HHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 241 AKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 241 a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
++..+.+.+++ .++|..+..+++.+...+-.-.|++|.-+.. .....++..|++++.++
T Consensus 41 a~~~g~~~~v~-~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~---~~~~~~~~~G~~~v~~d 99 (375)
T PRK11706 41 EQRFGSAKVLL-TPSCTAALEMAALLLDIQPGDEVIMPSYTFV---STANAFVLRGAKIVFVD 99 (375)
T ss_pred HHHhCCCeEEE-ECCHHHHHHHHHHHhCCCCCCEEEECCCCcH---HHHHHHHHcCCEEEEEe
Confidence 34456667766 7788888766554433333346777765444 45667788899998886
No 222
>KOG0023|consensus
Probab=50.43 E-value=84 Score=30.79 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=38.9
Q ss_pred hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeC
Q psy11239 61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121 (410)
Q Consensus 61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~ 121 (410)
.+++..+.-.+.|-.|.----+|+.+|++++++-..+. .|.+.++.+||++.++..
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~-----kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK-----KKEEAIKSLGADVFVDST 234 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch-----hHHHHHHhcCcceeEEec
Confidence 34444333324333777667788999999997764432 478999999999988763
No 223
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=50.10 E-value=63 Score=31.45 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=35.4
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++ .++|..|.+....++.+|.+-++++..+ +.|++..+.+||+.++
T Consensus 173 VlV-~G~G~vG~~aiqlak~~G~~~Vi~~~~~-----~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 173 VFV-SGVGPIGCLIVAAVKTLGAAEIVCADVS-----PRSLSLAREMGADKLV 219 (343)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCcEEEEEeCC-----HHHHHHHHHcCCcEEe
Confidence 555 4679999999999999999655544322 3678899999998654
No 224
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=50.06 E-value=41 Score=29.25 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=37.9
Q ss_pred CCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 63 KKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 63 ~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+..+++. ++||.|.+.|..+..+|.+.+ +++.. +.+++..+.+++..+.++
T Consensus 20 p~~vvv~-G~G~vg~gA~~~~~~lGa~v~--~~d~~----~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 20 PAKVVVT-GAGRVGQGAAEIAKGLGAEVV--VPDER----PERLRQLESLGAYFIEVD 70 (168)
T ss_dssp T-EEEEE-STSHHHHHHHHHHHHTT-EEE--EEESS----HHHHHHHHHTTTEESEET
T ss_pred CeEEEEE-CCCHHHHHHHHHHhHCCCEEE--eccCC----HHHHHhhhcccCceEEEc
Confidence 4446664 899999999999999988755 44433 367888999999988774
No 225
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=49.93 E-value=56 Score=31.70 Aligned_cols=46 Identities=13% Similarity=-0.045 Sum_probs=33.7
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++ .++|..|.+.+..|+.+|.+.+++.. + +.|+++.+.+||+.+.
T Consensus 169 VlV-~G~g~iG~~a~~~a~~~G~~vi~~~~-~-----~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 169 LGL-YGFGGSAHLTAQVALAQGATVHVMTR-G-----AAARRLALALGAASAG 214 (329)
T ss_pred EEE-EcCCHHHHHHHHHHHHCCCeEEEEeC-C-----hHHHHHHHHhCCceec
Confidence 444 45688899999999999987443322 1 3678999999998654
No 226
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=49.73 E-value=60 Score=30.57 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=35.7
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|..|..++..|+.+|.+.++++. ..+ .+++.++.+|++.+.
T Consensus 122 ~~VlV-~G~G~vG~~~~~~ak~~G~~~Vi~~~--~~~---~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 122 RRVLV-VGAGMLGLTAAAAAAAAGAARVVAAD--PSP---DRRELALSFGATALA 170 (280)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCH---HHHHHHHHcCCcEec
Confidence 45655 57789999999999999998555552 222 466788889997654
No 227
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=49.47 E-value=48 Score=32.41 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=35.8
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
+.+++ .++|..|...+..|+.+|.+++++.+.... ..+++.++.+|++.+
T Consensus 174 ~~vlI-~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~---~~~~~~~~~~Ga~~v 223 (355)
T cd08230 174 RRALV-LGAGPIGLLAALLLRLRGFEVYVLNRRDPP---DPKADIVEELGATYV 223 (355)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCeEEEEecCCCC---HHHHHHHHHcCCEEe
Confidence 45555 567999999999999999976655532112 256778889999864
No 228
>PRK06128 oxidoreductase; Provisional
Probab=49.33 E-value=1.1e+02 Score=29.15 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=36.0
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++.++|--|.++|..-...|.+++++...............++..|.+++.+.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALP 112 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEe
Confidence 456776667889999999999999988765422111111223445666777765554
No 229
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=49.08 E-value=59 Score=31.66 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=35.3
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|-.|.+....|+.+|.+.++++. ..+ .+++.++.+||+.+.
T Consensus 171 ~~VlV-~G~G~vG~~aiqlak~~G~~~Vi~~~--~~~---~~~~~a~~lGa~~vi 219 (343)
T PRK09880 171 KRVFV-SGVGPIGCLIVAAVKTLGAAEIVCAD--VSP---RSLSLAREMGADKLV 219 (343)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEe--CCH---HHHHHHHHcCCcEEe
Confidence 45666 56789999999999999997555552 122 466788889997654
No 230
>PRK08227 autoinducer 2 aldolase; Validated
Probab=48.61 E-value=1.8e+02 Score=27.62 Aligned_cols=92 Identities=9% Similarity=0.020 Sum_probs=53.6
Q ss_pred CceeEEeecCCCCCc-hhhHHHHHHHHHHHHHcCCCceEEec--CchH------HHHHHHHHHHHcCCcEEEEEcCCCc-
Q psy11239 213 GSKIFLKREDLNFTG-AHKMNNSIAQSLLAKFLKKKRIICET--GAGM------HGVSTATSCCLLNLESIIYIGENDY- 282 (410)
Q Consensus 213 ~~~v~~K~e~~~ptg-S~K~R~a~~~~~~a~~~g~~~~v~~~--ssGN------~g~a~A~~a~~~G~~~~vv~p~~~~- 282 (410)
+..+.+|........ .......+..+..|.+.|.+.+.+.. ++-+ .-..++..|.++|+++++++|....
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~ 153 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDM 153 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCc
Confidence 456777776543221 11234455567889999998654322 2221 2334566799999999997775421
Q ss_pred cchhh----hHHHHHHCCCEEEEEeC
Q psy11239 283 KRQNI----NVKKIKLLGGTVYLVQY 304 (410)
Q Consensus 283 ~~~~~----~~~~~~~~Ga~v~~v~~ 304 (410)
+.... -.+....+||+++-++.
T Consensus 154 ~~~~~~ia~aaRiaaELGADiVK~~y 179 (264)
T PRK08227 154 VRDARYFSLATRIAAEMGAQIIKTYY 179 (264)
T ss_pred CchHHHHHHHHHHHHHHcCCEEecCC
Confidence 11011 12333458999998863
No 231
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=48.34 E-value=72 Score=31.33 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=35.7
Q ss_pred CCc-eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 63 KKR-IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 63 ~~~-~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
++. +++ .++|..|.+++..|+.+|...++++... +.|+..++.+||+.+.
T Consensus 187 ~g~~VlV-~G~g~vG~~a~q~ak~~G~~~vi~~~~~-----~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 187 KGSTVAI-FGLGAVGLAVAEGARIRGASRIIGVDLN-----PSKFEQAKKFGVTEFV 237 (369)
T ss_pred CCCEEEE-ECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEE
Confidence 344 445 4679999999999999998544444222 2578889999997544
No 232
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=48.26 E-value=88 Score=35.47 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=26.3
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
+.+++ .++|-.|.+.|...++.|++++||=
T Consensus 307 kkVaV-IGsGPAGLsaA~~Lar~G~~VtVfE 336 (944)
T PRK12779 307 PPIAV-VGSGPSGLINAYLLAVEGFPVTVFE 336 (944)
T ss_pred CeEEE-ECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 45555 8999999999999999999999984
No 233
>PTZ00323 NAD+ synthase; Provisional
Probab=47.99 E-value=1.8e+02 Score=28.08 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=42.5
Q ss_pred HHHcCCCceEEecCch-HHHHHHHHHHHHcCC-------cEEEEEcCCCcc-chhhhHHHHHHCCCEEEEEeCCCHHHHH
Q psy11239 241 AKFLKKKRIICETGAG-MHGVSTATSCCLLNL-------ESIIYIGENDYK-RQNINVKKIKLLGGTVYLVQYGNLKEAM 311 (410)
Q Consensus 241 a~~~g~~~~v~~~ssG-N~g~a~A~~a~~~G~-------~~~vv~p~~~~~-~~~~~~~~~~~~Ga~v~~v~~g~~~~~~ 311 (410)
.++.+.+++|+..|+| -.+..++.+.+.+|. -+.+.+|..+++ ..+.-...++.+|.+.+.++-....++.
T Consensus 41 l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~ 120 (294)
T PTZ00323 41 MRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQTEIHTQL 120 (294)
T ss_pred HHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHH
Confidence 3356677888878999 455555666666764 233456743222 2234455678899998888633333333
No 234
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=47.77 E-value=1.3e+02 Score=27.56 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCC--ceEEecCch---HHHHHHHHHHHHcCCcEEEEEcCC
Q psy11239 236 AQSLLAKFLKKK--RIICETGAG---MHGVSTATSCCLLNLESIIYIGEN 280 (410)
Q Consensus 236 ~~~~~a~~~g~~--~~v~~~ssG---N~g~a~A~~a~~~G~~~~vv~p~~ 280 (410)
.++..|.+.|.. .+|..+|.| .+.++||.||++-|=+.+.++|+.
T Consensus 30 aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~ 79 (218)
T PF07279_consen 30 AEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDE 79 (218)
T ss_pred HHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCCh
Confidence 366666666763 333323554 478999999999999999999964
No 235
>PRK06182 short chain dehydrogenase; Validated
Probab=47.68 E-value=1.5e+02 Score=27.60 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=33.5
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++.++|--|.++|......|.+++++... +.+++.+...+.+++.++
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~------~~~l~~~~~~~~~~~~~D 54 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR------VDKMEDLASLGVHPLSLD 54 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC------HHHHHHHHhCCCeEEEee
Confidence 346666667889999999988899887765422 134444544566655554
No 236
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=47.63 E-value=96 Score=27.69 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=38.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHh
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWS 136 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~ 136 (410)
+.|.=.|||-+|.++|-++..+|..++++.-..... + -.+.+++.+. +..+-.+.+.+.+.
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~--~-------p~~~~~i~v~--sa~em~~~~~~~~~ 81 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP--P-------PPGVKVIRVE--SAEEMLEAVKELLP 81 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------------TTEEEEE-S--SHHHHHHHHHHHGG
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc--c-------cccceEEEec--chhhhhhhhccccC
Confidence 466767899999999999999999999998654321 0 2466777775 55555555555544
No 237
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=47.60 E-value=92 Score=26.21 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=42.8
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCC-CccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHH
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGEN-DYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWS 319 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~-~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~ 319 (410)
.+++..+++.-|+++|..-.+.|-..++++..+ +.+..+..+..++..|.++..++-+- -.+.++...+...
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 345547778899999998888877666655432 12222344556677889887775222 3334444444333
No 238
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=47.47 E-value=97 Score=30.70 Aligned_cols=73 Identities=10% Similarity=0.125 Sum_probs=45.4
Q ss_pred CCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 43 TGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 43 tGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+|.-+.|..+.. .+++..+...+++. +||..|..+++.+...+=.-.|++|..+- +.....++..|++++.++
T Consensus 27 ~g~~~~~~~~e~-~la~~~g~~~~v~~-~sgt~al~~~l~~~~~~~Gd~Viv~~~t~---~~~~~~~~~~G~~~v~~d 99 (375)
T PRK11706 27 CGDGGFTRRCQQ-WLEQRFGSAKVLLT-PSCTAALEMAALLLDIQPGDEVIMPSYTF---VSTANAFVLRGAKIVFVD 99 (375)
T ss_pred cCCCHHHHHHHH-HHHHHhCCCeEEEE-CCHHHHHHHHHHHhCCCCCCEEEECCCCc---HHHHHHHHHcCCEEEEEe
Confidence 444444543322 23455566666664 88888877766543233334677777554 356778899999999886
No 239
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=47.37 E-value=1.1e+02 Score=26.42 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=48.4
Q ss_pred hhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEecc------CCccccchhHHHHHhcCCEEEEE
Q psy11239 46 HKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGE------NDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 46 ~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~------~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
+-++..-..+..+++++-+.+|+++|+|.++.-++=+..- .++.++|.-. ++-+--++-.+.++..||+|..-
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~ 89 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQ 89 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCceeeee
Confidence 4455444566688889988999988889998765544422 2788777642 22111235677888899988654
No 240
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=47.23 E-value=77 Score=30.38 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=36.2
Q ss_pred CCc-eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239 63 KKR-IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 63 ~~~-~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
++. +++...+|-.|.+++..|+.+|.+.+++... +.|...++.+|++.+..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s------~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS------DEKVAYLKKLGFDVAFN 189 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCCEEEe
Confidence 344 5454346999999999999999975544322 25788889999975543
No 241
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=47.12 E-value=1.2e+02 Score=30.42 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=35.2
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
+.+++ .++|-.|.+++..|+.+|.+.+++. + .. ..+++..+.+|++.+
T Consensus 187 ~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~-d-~~---~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 187 STVYI-AGAGPVGLAAAASAQLLGAAVVIVG-D-LN---PARLAQARSFGCETV 234 (393)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCceEEEe-C-CC---HHHHHHHHHcCCeEE
Confidence 46666 7778999999999999999877654 2 11 246777888898753
No 242
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=46.71 E-value=1.3e+02 Score=28.55 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=34.8
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
+++-..+|..|.++...|+.+|++.+++... +.|...++.+|++-+..
T Consensus 147 vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s------~~~~~~l~~~Ga~~vi~ 194 (329)
T cd08294 147 VVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS------DDKVAWLKELGFDAVFN 194 (329)
T ss_pred EEEecCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCCEEEe
Confidence 5554346999999999999999985444321 36788999999975443
No 243
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=46.23 E-value=1.7e+02 Score=24.14 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=49.9
Q ss_pred HHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhcccCCcccccccccCcccccc
Q psy11239 79 TATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI 158 (410)
Q Consensus 79 ~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 158 (410)
++...+..+.+..|+....... ..........+.+++.-..+++.+++..+.+.+ ........++|+ +.|-
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~Q~g~dLG~Rm~~a~~~~-~~g~~~vvliGs---D~P~--- 72 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDH--AAFRQLWLPSGFSFFPQQGGDLGERMANAFQQA-ARGYEPVVLIGS---DCPD--- 72 (122)
T ss_dssp ------TSSSEEEEEE----TT--HHHHHHHH-TTSEEEE--SSSHHHHHHHHHHHH-HTT-SEEEEE-S---S-TT---
T ss_pred ccccccCCCcCEEEEEcCCccH--HHHhccccCCCCEEeecCCCCHHHHHHHHHHHH-HcCCCcEEEEcC---CCCC---
Confidence 3455667788888887544331 222222556677777776578999999999888 332233444443 2222
Q ss_pred ccccchhHHHHHHHhh-hhcCCCccEEEEecCCCCc-eeecc
Q psy11239 159 VRDFQSIIGYEIHQQL-NFNFYNKKYILACVGGGSN-ALGRP 198 (410)
Q Consensus 159 ~~~g~~ti~~EI~~q~-~~~~~~~d~iv~~vG~Gg~-~~G~~ 198 (410)
+-.++++|. +.. ...|.|+.|+--||- +.|+.
T Consensus 73 -------l~~~~l~~A~~~L-~~~d~VlgPa~DGGy~LiG~~ 106 (122)
T PF09837_consen 73 -------LTPDDLEQAFEAL-QRHDVVLGPAEDGGYYLIGLR 106 (122)
T ss_dssp ---------HHHHHHHHHHT-TT-SEEEEEBTTSSEEEEEEE
T ss_pred -------CCHHHHHHHHHHh-ccCCEEEeeccCCCEEEEecC
Confidence 122222221 111 124999999998874 44654
No 244
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=45.68 E-value=89 Score=27.35 Aligned_cols=88 Identities=24% Similarity=0.262 Sum_probs=0.0
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCce
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSH 326 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~ 326 (410)
+.+++ .+-|.-|+++|..++.+|.+++|+ +.+ +.+..+....|=++.. .+++...+ +-+
T Consensus 24 k~vvV-~GYG~vG~g~A~~lr~~Ga~V~V~----e~D--Pi~alqA~~dGf~v~~-----~~~a~~~a---------di~ 82 (162)
T PF00670_consen 24 KRVVV-IGYGKVGKGIARALRGLGARVTVT----EID--PIRALQAAMDGFEVMT-----LEEALRDA---------DIF 82 (162)
T ss_dssp SEEEE-E--SHHHHHHHHHHHHTT-EEEEE-----SS--HHHHHHHHHTT-EEE------HHHHTTT----------SEE
T ss_pred CEEEE-eCCCcccHHHHHHHhhCCCEEEEE----ECC--hHHHHHhhhcCcEecC-----HHHHHhhC---------CEE
Q ss_pred EEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCc
Q psy11239 327 YLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGG 373 (410)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGt 373 (410)
+. .......+..|.++|+ +-++|++-+|+
T Consensus 83 vt-------------aTG~~~vi~~e~~~~m-----kdgail~n~Gh 111 (162)
T PF00670_consen 83 VT-------------ATGNKDVITGEHFRQM-----KDGAILANAGH 111 (162)
T ss_dssp EE--------------SSSSSSB-HHHHHHS------TTEEEEESSS
T ss_pred EE-------------CCCCccccCHHHHHHh-----cCCeEEeccCc
No 245
>PRK06139 short chain dehydrogenase; Provisional
Probab=45.58 E-value=1e+02 Score=30.13 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=34.1
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++..||--|.++|...+..|.+++++.... +....-...++.+|+++..+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~--~~l~~~~~~~~~~g~~~~~~~ 62 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDE--EALQAVAEECRALGAEVLVVP 62 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEE
Confidence 4566665668889999988899998866554321 111122345566787765443
No 246
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=44.78 E-value=2.1e+02 Score=24.95 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHH-HHHCCCEEEEEeCCCHHHHHHHHHHHHHcc
Q psy11239 243 FLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKK-IKLLGGTVYLVQYGNLKEAMNEAIKDWSNN 321 (410)
Q Consensus 243 ~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~-~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~ 321 (410)
....+++-+ -+.|+-|+++|..++.+|++++.+-|..... . ....+.+... +++.+..+
T Consensus 33 ~l~g~tvgI-iG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~-------~~~~~~~~~~~~-----l~ell~~a------- 92 (178)
T PF02826_consen 33 ELRGKTVGI-IGYGRIGRAVARRLKAFGMRVIGYDRSPKPE-------EGADEFGVEYVS-----LDELLAQA------- 92 (178)
T ss_dssp -STTSEEEE-ESTSHHHHHHHHHHHHTT-EEEEEESSCHHH-------HHHHHTTEEESS-----HHHHHHH--------
T ss_pred ccCCCEEEE-EEEcCCcCeEeeeeecCCceeEEecccCChh-------hhcccccceeee-----hhhhcchh-------
Q ss_pred CCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHH--HHHHHHHhcCCCeEEEEcc
Q psy11239 322 ILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNA--LGIFYTFINSNFKLVAIES 396 (410)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~--~Gi~~~~~~~~~~vigVe~ 396 (410)
.+.++.-..++. ..|. +..|.++++ +++.+++-+|-|+.+ ..+..++++-.+.-.+.+.
T Consensus 93 ---Div~~~~plt~~------T~~l--i~~~~l~~m-----k~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV 153 (178)
T PF02826_consen 93 ---DIVSLHLPLTPE------TRGL--INAEFLAKM-----KPGAVLVNVARGELVDEDALLDALESGKIAGAALDV 153 (178)
T ss_dssp ---SEEEE-SSSSTT------TTTS--BSHHHHHTS-----TTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS
T ss_pred ---hhhhhhhccccc------ccee--eeeeeeecc-----ccceEEEeccchhhhhhhHHHHHHhhccCceEEEEC
No 247
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=44.60 E-value=1.7e+02 Score=27.36 Aligned_cols=63 Identities=13% Similarity=0.029 Sum_probs=42.4
Q ss_pred HHHcCCCceEEecCch-HHHHHHHHHHHHcC-Cc-EEEEEcCCCcc--chhhhHHHHHHCCCEEEEEe
Q psy11239 241 AKFLKKKRIICETGAG-MHGVSTATSCCLLN-LE-SIIYIGENDYK--RQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 241 a~~~g~~~~v~~~ssG-N~g~a~A~~a~~~G-~~-~~vv~p~~~~~--~~~~~~~~~~~~Ga~v~~v~ 303 (410)
.++.|.+++|+.-|+| ..+...+.+.+.+| -+ ..++||....+ ....-...++.+|.+...++
T Consensus 13 ~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~ 80 (242)
T PF02540_consen 13 VKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVID 80 (242)
T ss_dssp HHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccc
Confidence 4467778888888999 56666667777786 33 45678844322 12244556778999988876
No 248
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=44.59 E-value=77 Score=31.24 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=34.7
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++. ++|-.|..++..|+.+|.+-++++..+ +.|+...+.+||+.++
T Consensus 195 VlV~-G~G~vG~~a~~lak~~G~~~Vi~~~~~-----~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 195 VAVV-GLGGVGLSALLGAVAAGASQVVAVDLN-----EDKLALARELGATATV 241 (371)
T ss_pred EEEE-CCCHHHHHHHHHHHHcCCCcEEEEcCC-----HHHHHHHHHcCCceEe
Confidence 5554 679999999999999999644444322 3678888999997543
No 249
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=44.46 E-value=1.4e+02 Score=29.84 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=35.7
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
+++ ..+|-.|..++..|+.+|.+.+++.... +.|+.+.+.+||+.+
T Consensus 189 VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d~~-----~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 189 VYI-AGAGPVGLAAAASAQLLGAAVVIVGDLN-----PARLAQARSFGCETV 234 (393)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCceEEEeCCC-----HHHHHHHHHcCCeEE
Confidence 555 5779999999999999999876644222 368899999999853
No 250
>PRK00768 nadE NAD synthetase; Reviewed
Probab=44.37 E-value=2.8e+02 Score=26.38 Aligned_cols=64 Identities=9% Similarity=0.016 Sum_probs=37.6
Q ss_pred HHHHcCCCceEEecCch-HHHHHHHHHHHHcC-C----------cEEEEEcCCCccchhhhHHHHHHCCC-EEEEEe
Q psy11239 240 LAKFLKKKRIICETGAG-MHGVSTATSCCLLN-L----------ESIIYIGENDYKRQNINVKKIKLLGG-TVYLVQ 303 (410)
Q Consensus 240 ~a~~~g~~~~v~~~ssG-N~g~a~A~~a~~~G-~----------~~~vv~p~~~~~~~~~~~~~~~~~Ga-~v~~v~ 303 (410)
..++.|.+++|+.-|+| -.+..++.+...++ . -+.+.||.............++.+|. +...++
T Consensus 32 ~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lgi~~~~~i~ 108 (268)
T PRK00768 32 YLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQPDRVLTVN 108 (268)
T ss_pred HHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcCCCeeEEEE
Confidence 34567888899988988 34444443333333 1 24556775333222344567778898 666664
No 251
>PTZ00376 aspartate aminotransferase; Provisional
Probab=43.47 E-value=2.3e+02 Score=28.30 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=57.8
Q ss_pred CCCchhhHHHHHHHHHHHHH---cCCCceEE-ecCchHHHHHHHHHH--HHcCCcEEEEEcCCCccchhhhHHHHHHCCC
Q psy11239 224 NFTGAHKMNNSIAQSLLAKF---LKKKRIIC-ETGAGMHGVSTATSC--CLLNLESIIYIGENDYKRQNINVKKIKLLGG 297 (410)
Q Consensus 224 ~ptgS~K~R~a~~~~~~a~~---~g~~~~v~-~~ssGN~g~a~A~~a--~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga 297 (410)
.+.|.-..|.+....+.... ...+.+++ ...+++.+..++..+ ..+.-.-.|++|+.... .-...++.+|+
T Consensus 70 ~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~---~~~~~~~~~G~ 146 (404)
T PTZ00376 70 PIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWP---NHVNIFKSAGL 146 (404)
T ss_pred CCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCch---hHHHHHHHcCC
Confidence 34577788888666442111 12345542 245567776666542 22332345666654444 44567888999
Q ss_pred EEEEEeC---CC--H-HHHHHHHHHHHHccCCCceEEecCCCCCCCC
Q psy11239 298 TVYLVQY---GN--L-KEAMNEAIKDWSNNILNSHYLIGTASGPHPY 338 (410)
Q Consensus 298 ~v~~v~~---g~--~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 338 (410)
+++.++- .+ + -+.+..+.+.... ....|++++..||.+.
T Consensus 147 ~~~~v~l~~~~~~~~d~~~l~~~~~~~~~--~~~~~~~~~p~NPTG~ 191 (404)
T PTZ00376 147 NVKEYRYYDPKTKGLDFDGMLEDLRTAPN--GSVVLLHACAHNPTGV 191 (404)
T ss_pred ceeeccccCcccCCcCHHHHHHHHHhCCC--CCEEEEeCCCCCCCCC
Confidence 9998863 11 1 1223333322111 2356777777766554
No 252
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=43.37 E-value=95 Score=30.60 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=34.2
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++ .++|..|.+++..|+.+|.+-++++... +.|++..+.+||+.++
T Consensus 189 VlV-~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~-----~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 189 VAV-FGLGGIGLSVIQGARMAKASRIIAIDIN-----PAKFELAKKLGATDCV 235 (368)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHhCCCeEE
Confidence 455 4679999999999999999544444222 3678888999997544
No 253
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=43.35 E-value=1.5e+02 Score=27.13 Aligned_cols=53 Identities=11% Similarity=-0.005 Sum_probs=32.8
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++.+++--|.++|......|.+++++-.... +.....++..|.++..+.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~ 61 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA----PETQAQVEALGRKFHFIT 61 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH----HHHHHHHHHcCCeEEEEE
Confidence 44666666788888888888889998876633211 122334455666655443
No 254
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=43.31 E-value=94 Score=30.58 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=34.3
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++- ++|..|.+++..|+.+|.+-++++..+ +.|+...+.+||+.++
T Consensus 190 VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~~-----~~~~~~~~~lGa~~~i 236 (368)
T cd08300 190 VAVF-GLGAVGLAVIQGAKAAGASRIIGIDIN-----PDKFELAKKFGATDCV 236 (368)
T ss_pred EEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCCEEE
Confidence 5554 679999999999999999544444222 2578888999997544
No 255
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=42.58 E-value=1.3e+02 Score=27.81 Aligned_cols=55 Identities=9% Similarity=-0.083 Sum_probs=32.9
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++.++|.-|.++|......|.+++++-.. ++....-...++..|+++..+.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDIN--QELVDKGLAAYRELGIEAHGYV 65 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHHHHhcCCceEEEE
Confidence 446666677889999999888899887665321 1111112233445566655444
No 256
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=42.08 E-value=46 Score=30.30 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=26.1
Q ss_pred eEEEeC--ccHHHHHHHHHHHHcCCcEEEEeccCCc
Q psy11239 66 IICETG--AGMHGVSTATSCCLLNLESIIYIGENDY 99 (410)
Q Consensus 66 ~v~~~s--sGN~g~a~A~~a~~~G~~~~iv~p~~~~ 99 (410)
+|.-+| +|.+-.+||.+|++.|+++.|++....+
T Consensus 44 TifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~~p 79 (207)
T PF11814_consen 44 TIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTDGP 79 (207)
T ss_pred eecccCCCCCcChHHHHHHHHHcCCceEEEECCCCC
Confidence 444334 3778888999999999999999977544
No 257
>PLN02740 Alcohol dehydrogenase-like
Probab=42.03 E-value=92 Score=30.85 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=35.7
Q ss_pred CCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 63 KKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 63 ~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
++..|+..++|.-|.+++..|+.+|.+-++++... +.|++..+.+||+.++
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~-----~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN-----PEKFEKGKEMGITDFI 248 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC-----hHHHHHHHHcCCcEEE
Confidence 34433334679999999999999998544444222 3678889999997544
No 258
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=42.00 E-value=80 Score=30.59 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=32.8
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
+.+++ .+.|-.|.+++..|+.+|.+.+++.+ + + .+++.++.+||+.+
T Consensus 167 ~~VlV-~G~g~iG~~a~~~a~~~G~~vi~~~~--~-~---~~~~~a~~~Ga~~v 213 (329)
T TIGR02822 167 GRLGL-YGFGGSAHLTAQVALAQGATVHVMTR--G-A---AARRLALALGAASA 213 (329)
T ss_pred CEEEE-EcCCHHHHHHHHHHHHCCCeEEEEeC--C-h---HHHHHHHHhCCcee
Confidence 35555 55677888888899999987444432 2 2 45778889999754
No 259
>PRK06139 short chain dehydrogenase; Provisional
Probab=41.72 E-value=1.5e+02 Score=28.87 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=35.3
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.++++..++--|+++|......|.+++++... .+..+.....++..|+++..+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~--~~~l~~~~~~~~~~g~~~~~~ 61 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARD--EEALQAVAEECRALGAEVLVV 61 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEE
Confidence 445554666778889998888999987776542 222122344566788887554
No 260
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=41.68 E-value=1.9e+02 Score=29.04 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=27.9
Q ss_pred HHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHH
Q psy11239 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNA 377 (410)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~ 377 (410)
.+...+.+.+. +-.|.+.+..-|+|-...+.. |.|..++. .+|.| +++|+|+.+
T Consensus 46 ~~~v~~~L~~~--~i~~~if~~v~p~P~~~~v~~-----~~~~~~~~-----~~D~i-IalGGGS~~ 99 (377)
T COG1454 46 LDKVLDSLDAA--GIEYEVFDEVEPEPTIETVEA-----GAEVAREF-----GPDTI-IALGGGSVI 99 (377)
T ss_pred HHHHHHHHHhc--CCeEEEecCCCCCCCHHHHHH-----HHHHHHhc-----CCCEE-EEeCCccHH
Confidence 33444444444 223444444444555443443 34666655 57765 578887764
No 261
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=41.45 E-value=1.8e+02 Score=27.67 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=33.7
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++...+|..|.++...|+.+|.+.+++.. .+ .+.+.++.+|++-++
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~---~~~~~l~~~Ga~~vi 193 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SD---DKVAWLKELGFDAVF 193 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CH---HHHHHHHHcCCCEEE
Confidence 45555355788999999999999998555442 22 456677778986444
No 262
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=41.28 E-value=1.3e+02 Score=26.31 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=28.6
Q ss_pred CceEEecCch-HHHHHHHHH--HHHcCCcEEEEEc--CC-CccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAG-MHGVSTATS--CCLLNLESIIYIG--EN-DYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssG-N~g~a~A~~--a~~~G~~~~vv~p--~~-~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
..+++-++.| |-|-+++++ -+..|++++++.- .. ..+..+.+...++.+|.+++.
T Consensus 26 ~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 86 (169)
T PF03853_consen 26 PRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIE 86 (169)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEES
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEee
Confidence 4554447777 555555554 4457999888552 21 112223445566666666553
No 263
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=41.26 E-value=1.1e+02 Score=27.05 Aligned_cols=59 Identities=7% Similarity=0.016 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHHHHHHHHhhc
Q psy11239 76 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNN 138 (410)
Q Consensus 76 g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~~~~~~~~~~ 138 (410)
|..+.++++.+|.+..--++.. +-...=+......|..|..+. .-.+..+.+.+.+.+.
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~--dl~~~l~~~~~~~~~~vfllG--~~~~v~~~~~~~l~~~ 71 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGP--DLMEELCQRAGKEKLPIFLYG--GKPDVLQQLKVKLIKE 71 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChH--HHHHHHHHHHHHcCCeEEEEC--CCHHHHHHHHHHHHHH
Confidence 4678889999987643233321 111123334456777888884 3344555555555443
No 264
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=41.02 E-value=90 Score=30.27 Aligned_cols=47 Identities=26% Similarity=0.295 Sum_probs=35.2
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++. ++|..|.+++..|+.+|.+.++++... +.|+..++.+||+-+.
T Consensus 164 vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 164 VIII-GAGTIGLLAIQCAVALGAKSVTAIDIN-----SEKLALAKSLGAMQTF 210 (347)
T ss_pred EEEE-CCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCceEe
Confidence 5554 679999999999999999865555332 3578888999996543
No 265
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=40.78 E-value=1.5e+02 Score=28.51 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=33.3
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
+++. ++|..|.+++..|+.+|+..++++ ... +.|...++.+|+.++
T Consensus 171 vlI~-g~g~vg~~~~~~a~~~g~~~v~~~-~~~----~~~~~~~~~~g~~~~ 216 (344)
T cd08284 171 VAVI-GCGPVGLCAVLSAQVLGAARVFAV-DPV----PERLERAAALGAEPI 216 (344)
T ss_pred EEEE-CCcHHHHHHHHHHHHcCCceEEEE-cCC----HHHHHHHHHhCCeEE
Confidence 5554 679999999999999998434444 222 257778888998753
No 266
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=40.64 E-value=1.2e+02 Score=28.51 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=34.6
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
+++-..+|..|.++...|+.+|++.+++.+.. .+...++.+|++-+..
T Consensus 146 vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~~~ 193 (320)
T cd08243 146 LLIRGGTSSVGLAALKLAKALGATVTATTRSP------ERAALLKELGADEVVI 193 (320)
T ss_pred EEEEcCCChHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHhcCCcEEEe
Confidence 55543459999999999999999965554332 4677778899865543
No 267
>PRK07109 short chain dehydrogenase; Provisional
Probab=40.61 E-value=1.7e+02 Score=28.46 Aligned_cols=55 Identities=13% Similarity=0.133 Sum_probs=36.2
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+.++++.++|--|.++|....+.|.+++++... .+........++..|+++..+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~--~~~l~~~~~~l~~~g~~~~~v~ 63 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARG--EEGLEALAAEIRAAGGEALAVV 63 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHcCCcEEEEE
Confidence 345555677788999998888899987776642 2211233445667788876553
No 268
>PRK06348 aspartate aminotransferase; Provisional
Probab=40.58 E-value=3e+02 Score=27.21 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=44.0
Q ss_pred CCCchhhHHHHHHHHHHHH---HcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 224 NFTGAHKMNNSIAQSLLAK---FLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 224 ~ptgS~K~R~a~~~~~~a~---~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
.+.|..-.|.+........ ....+.+++ .+++.++..++..+- .+-.-.|++|..... .-...++.+|++++
T Consensus 64 ~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~i-t~G~~~al~~~~~~~-~~~gd~vlv~~p~y~---~~~~~~~~~g~~~~ 138 (384)
T PRK06348 64 DSGGDVELIEEIIKYYSKNYDLSFKRNEIMA-TVGACHGMYLALQSI-LDPGDEVIIHEPYFT---PYKDQIEMVGGKPI 138 (384)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCChhhEEE-cCChHHHHHHHHHHh-cCCCCEEEEeCCCCc---chHHHHHHcCCEEE
Confidence 4456667777766644322 123356666 677778776665543 222234566554443 34557778899988
Q ss_pred EEe
Q psy11239 301 LVQ 303 (410)
Q Consensus 301 ~v~ 303 (410)
.++
T Consensus 139 ~~~ 141 (384)
T PRK06348 139 ILE 141 (384)
T ss_pred Eec
Confidence 875
No 269
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=40.36 E-value=1e+02 Score=29.82 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=34.1
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHh-cCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKL-LGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~-~GA~v~~ 118 (410)
+++...+|..|.+++..|+.+|.+.+++... +.|...++. +|++-+.
T Consensus 155 VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~------~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 155 VFVSAASGAVGQLVGQLAKLKGCYVVGSAGS------DEKVDLLKNKLGFDDAF 202 (338)
T ss_pred EEEecCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHhcCCceeE
Confidence 5554345999999999999999985544322 257888887 9997543
No 270
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=40.17 E-value=1.2e+02 Score=31.98 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCCchhhHHHHHHHHH-HHH
Q psy11239 164 SIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSL-LAK 242 (410)
Q Consensus 164 ~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~~~~~-~a~ 242 (410)
..+..|+..+ ...|.+|||.+ ..||| .-.....+..++++-.+. |.+-.+.+ +|+
T Consensus 12 ~v~~eeL~r~-----GV~~vvicPGS-------RSTPL---ala~~~~~~i~~hv~~DE---------RsagFfALGlAK 67 (566)
T COG1165 12 RVFLEELARL-----GVRDVVICPGS-------RSTPL---ALAAAAHDAITVHVHIDE---------RSAGFFALGLAK 67 (566)
T ss_pred HHHHHHHHHc-----CCcEEEECCCC-------CCcHH---HHHHHhcCCeEEEEeccc---------chHHHHHHhhhh
Q ss_pred HcCCCceEEecCch----HHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCC
Q psy11239 243 FLKKKRIICETGAG----MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGG 297 (410)
Q Consensus 243 ~~g~~~~v~~~ssG----N~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga 297 (410)
..+.--.|+ ++|| |+.=|++- |+.-+++.+|.. .+.+. .++-.||
T Consensus 68 as~rPVavi-~TSGTA~ANl~PAViE-A~~srvpLIVLT-ADRP~-------EL~~~GA 116 (566)
T COG1165 68 ASKRPVAVI-CTSGTAVANLYPAVIE-ANLSRVPLIVLT-ADRPP-------ELRGCGA 116 (566)
T ss_pred hcCCCEEEE-EcCcchhhhccHHHHh-hhhcCCceEEEe-CCCCH-------HHhcCCC
No 271
>PRK06128 oxidoreductase; Provisional
Probab=40.01 E-value=2.3e+02 Score=26.78 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=36.0
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+.++++.++|--|.++|..-.+.|.++++................++..|.++..+.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALP 112 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEe
Confidence 345554777788999999888899988776532111111233456666787776553
No 272
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=39.80 E-value=2e+02 Score=26.02 Aligned_cols=53 Identities=9% Similarity=0.002 Sum_probs=32.7
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++..+|.-|.++|......|.+++++-... . ......++.++.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~---~~~~~~~~~~~~~~~~~~ 58 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-P---SETQQQVEALGRRFLSLT 58 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-H---HHHHHHHHhcCCceEEEE
Confidence 4466665668889999999999998776664321 1 122344455565554443
No 273
>PRK08017 oxidoreductase; Provisional
Probab=39.62 E-value=2.2e+02 Score=25.91 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=35.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeC
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~ 121 (410)
.+++...+|.-|.++|..-...|.+++++... +.+.+.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~------~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK------PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC------HHHhHHHHhCCCeEEEeec
Confidence 46665566999999999888899876554322 2355566667877776653
No 274
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=39.60 E-value=1.8e+02 Score=26.47 Aligned_cols=55 Identities=20% Similarity=0.074 Sum_probs=35.7
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++.++|.-|.++|..-...|.+++++...... ...-...++..|+++..+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~ 62 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDG--ANAVADEINKAGGKAIGVA 62 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHH--HHHHHHHHHhcCceEEEEE
Confidence 456676677999999999999999987655433211 1123344566677775554
No 275
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=39.19 E-value=2.3e+02 Score=26.97 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=33.3
Q ss_pred ceEEe-cCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 248 RIICE-TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 248 ~~v~~-~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
.+++- .++|..|.++...|+.+|.+.+++.+ .+ .+.+.++.+|++.++.
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~---~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RK---EQVDLLKKIGAEYVLN 194 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CH---HHHHHHHHcCCcEEEE
Confidence 44442 46788898888899999997555432 22 4566777899975543
No 276
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=39.09 E-value=2.2e+02 Score=25.90 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=34.2
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++.++|.-|.++|......|.+++++-.. .+........++..|.++..+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~--~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRD--PAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCceEEEEE
Confidence 456776667999999999998899976554322 1111122344556676665554
No 277
>PRK12744 short chain dehydrogenase; Provisional
Probab=39.08 E-value=2.1e+02 Score=26.22 Aligned_cols=57 Identities=16% Similarity=0.104 Sum_probs=33.2
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccC--CccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~--~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.+++...+|.-|.++|-.-...|.+++++.... ..+......+.++..|.++..+.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 67 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQ 67 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEe
Confidence 3466655668888899888888899866554221 11111122334555566655443
No 278
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=39.07 E-value=86 Score=30.56 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=33.8
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++ .++|..|.+++..|+.+|.+.+ ++.. . +.|+..++.+|++.++
T Consensus 170 VlV-~G~G~vG~~a~~~a~~~G~~vi-~~~~-~----~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 170 VIV-IGAGGVGGYMVQTAKAMGAAVV-AIDI-D----PEKLEMMKGFGADLTL 215 (349)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCeEE-EEcC-C----HHHHHHHHHhCCceEe
Confidence 444 4669999999999999999643 3322 2 3678888999997654
No 279
>PRK12743 oxidoreductase; Provisional
Probab=39.02 E-value=1.8e+02 Score=26.64 Aligned_cols=54 Identities=11% Similarity=0.008 Sum_probs=34.7
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
.+++..+++.-|.++|......|.+++++... +.+..+.....++.+|.++..+
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 57 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHS-DEEGAKETAEEVRSHGVRAEIR 57 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC-ChHHHHHHHHHHHhcCCceEEE
Confidence 34454777789999999999999988776532 2221112234566678776654
No 280
>PRK05993 short chain dehydrogenase; Provisional
Probab=39.02 E-value=2.1e+02 Score=26.71 Aligned_cols=50 Identities=10% Similarity=0.027 Sum_probs=33.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
.++++.++|.-|.++|...+..|.+++++... +.+...+...|.+++.++
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~------~~~~~~l~~~~~~~~~~D 55 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK------EEDVAALEAEGLEAFQLD 55 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC------HHHHHHHHHCCceEEEcc
Confidence 46666567999999998888899987765432 234455555566655554
No 281
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=38.92 E-value=1.2e+02 Score=30.91 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHc-CCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHH
Q psy11239 73 GMHGVSTATSCCLL-NLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAM 128 (410)
Q Consensus 73 GN~g~a~A~~a~~~-G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~ 128 (410)
+|.+.+++.+++.+ |++++++.|+.... .+.-...++..|..|..++ +..+++
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~-~~~~~~~~~~~G~~v~~~~--d~~eav 306 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEM-PAYIVEQISRNGHVIEQTD--DLAAGL 306 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCcccc-CHHHHHHHHhcCCeEEEEc--CHHHHh
Confidence 69999999997765 99999999986521 1223445566788887764 444443
No 282
>KOG1201|consensus
Probab=38.84 E-value=2.8e+02 Score=26.87 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=43.4
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcC-CEEEEEeCCCHHHHHHHHHHHHhhc
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLG-GTVYLVQYGNLKEAMNEAIKDWSNN 138 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~G-A~v~~v~~g~~~~~~~~~~~~~~~~ 138 (410)
++++.+|+--|+++|.--+++|-+..+. +-..+...+..+.++..| |.-..++-.+.+|-.+.+.+.-++.
T Consensus 41 vLITGgg~GlGr~ialefa~rg~~~vl~--Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 41 VLITGGGSGLGRLIALEFAKRGAKLVLW--DINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred EEEeCCCchHHHHHHHHHHHhCCeEEEE--eccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 6666566778999999999999844433 322211135566666667 3334565445677766666655554
No 283
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=38.72 E-value=2.4e+02 Score=27.72 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=41.6
Q ss_pred CchhhHHHHHHHHHHHHH-----cCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 226 TGAHKMNNSIAQSLLAKF-----LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 226 tgS~K~R~a~~~~~~a~~-----~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
.|....|.++........ ...+.+++ .++...+..++..+....=+-.|++|..... .-...++.+|++++
T Consensus 66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~i-t~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~---~~~~~~~~~g~~~~ 141 (374)
T PRK02610 66 GGHEALKQAIAEYVNESAAGSSQITPANISV-GNGSDELIRSLLIATCLGGEGSILVAEPTFS---MYGILAQTLGIPVV 141 (374)
T ss_pred CchHHHHHHHHHHhCccccccCCCCHHHEEE-cCChHHHHHHHHHHHcCCCCCeEEEcCCChH---HHHHHHHHcCCEEE
Confidence 466667776554332111 22345665 6666777765554443322224666654443 44556788999999
Q ss_pred EEe
Q psy11239 301 LVQ 303 (410)
Q Consensus 301 ~v~ 303 (410)
.++
T Consensus 142 ~~~ 144 (374)
T PRK02610 142 RVG 144 (374)
T ss_pred Eec
Confidence 886
No 284
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=38.63 E-value=3.1e+02 Score=27.61 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=60.8
Q ss_pred cCch-HHHHHHHHHHHHcCCcEEEEEcCC-Cc-cchhhhHHHHHHCCC-EEEEEeCCC--HHHHHHHHHHHHHccCCCce
Q psy11239 253 TGAG-MHGVSTATSCCLLNLESIIYIGEN-DY-KRQNINVKKIKLLGG-TVYLVQYGN--LKEAMNEAIKDWSNNILNSH 326 (410)
Q Consensus 253 ~ssG-N~g~a~A~~a~~~G~~~~vv~p~~-~~-~~~~~~~~~~~~~Ga-~v~~v~~g~--~~~~~~~a~~~~~~~~~~~~ 326 (410)
.|+| -+...+.|...+.+++++.|.-+- .. +......++...+|| +++.++--+ .++.+-.+++.-..- ...
T Consensus 4 ySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Y--eg~ 81 (388)
T PF00764_consen 4 YSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALY--EGR 81 (388)
T ss_dssp --SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--B--TTT
T ss_pred eCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHh--CCC
Confidence 7888 788889998888889988887431 22 111233446677999 888876222 222222333321111 122
Q ss_pred EEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEE-ccCchhHHHHHHHHHhc--CCCeEEE
Q psy11239 327 YLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILA-CVGGGSNALGIFYTFIN--SNFKLVA 393 (410)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~-~vGtGg~~~Gi~~~~~~--~~~~vig 393 (410)
|.+++ +.. +--......|++++. ..|+|.. |.|-|--..=+-..++. ++.+|++
T Consensus 82 YpL~t-----sl~---RplIa~~~v~~A~~~-----ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 82 YPLST-----SLA---RPLIAKKLVEVAREE-----GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp B--CC-----CCH---HHHHHHHHHHHHHHH-----T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred ccccc-----cch---HHHHHHHHHHHHHHc-----CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 33222 110 111111234555655 4688887 56777777666555543 3566553
No 285
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=38.59 E-value=2e+02 Score=26.69 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=33.4
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++.++|.-|.++|..-...|.+++++-..... .......++.+|.++..+.
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~ 65 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEK--AEAVVAEIKAAGGEALAVK 65 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 446666667889999999998999987665432211 1122333445566655444
No 286
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=38.28 E-value=1.9e+02 Score=26.39 Aligned_cols=55 Identities=18% Similarity=0.052 Sum_probs=36.9
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+.++++.++|.-|.+++......|.+++++... .+........++..|.++..+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~ 62 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLN--QDGANAVADEINKAGGKAIGVA 62 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCC--hHHHHHHHHHHHhcCceEEEEE
Confidence 345555788899999999999999987766543 2221233445666788876553
No 287
>PRK08960 hypothetical protein; Provisional
Probab=38.13 E-value=3.1e+02 Score=27.10 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=43.0
Q ss_pred CCchhhHHHHHHHHHHHH---HcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 225 FTGAHKMNNSIAQSLLAK---FLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 225 ptgS~K~R~a~~~~~~a~---~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.|....|.++....... ....+.+++ .+++..+..+++.+- +.-.-.|++|+...+ .....++.+|++++.
T Consensus 68 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~i-t~G~~~al~~~~~~~-~~~gd~vlv~~p~y~---~~~~~~~~~g~~~~~ 142 (387)
T PRK08960 68 ARGLPALREAIAGFYAQRYGVDVDPERILV-TPGGSGALLLASSLL-VDPGKHWLLADPGYP---CNRHFLRLVEGAAQL 142 (387)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhEEE-ccCcHHHHHHHHHHh-cCCCCEEEEcCCCCc---chHHHHHhcCCeEEE
Confidence 346677787766654322 122346665 677777776665433 333344555544444 345567778999887
Q ss_pred Ee
Q psy11239 302 VQ 303 (410)
Q Consensus 302 v~ 303 (410)
++
T Consensus 143 v~ 144 (387)
T PRK08960 143 VP 144 (387)
T ss_pred Ee
Confidence 75
No 288
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=38.08 E-value=67 Score=26.03 Aligned_cols=80 Identities=18% Similarity=0.071 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC--HHHHHH
Q psy11239 235 IAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMN 312 (410)
Q Consensus 235 ~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~--~~~~~~ 312 (410)
......|++.+.+.+|+-..+|++++.+|.+ +-..+.+++.|+.. .-.++.-.+|..-+.++... .++.+.
T Consensus 6 ~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~--RP~~pIiavt~~~~-----~~r~l~l~~GV~p~~~~~~~~~~~~~~~ 78 (117)
T PF02887_consen 6 RAAVELAEDLNAKAIVVFTESGRTARLISKY--RPKVPIIAVTPNES-----VARQLSLYWGVYPVLIEEFDKDTEELIA 78 (117)
T ss_dssp HHHHHHHHHHTESEEEEE-SSSHHHHHHHHT---TSSEEEEEESSHH-----HHHHGGGSTTEEEEECSSHSHSHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHHhh--CCCCeEEEEcCcHH-----HHhhhhcccceEEEEeccccccHHHHHH
Confidence 3345567788888888878899998877653 23466666665321 11222234576665554322 666677
Q ss_pred HHHHHHHcc
Q psy11239 313 EAIKDWSNN 321 (410)
Q Consensus 313 ~a~~~~~~~ 321 (410)
.+.+.+.+.
T Consensus 79 ~a~~~~~~~ 87 (117)
T PF02887_consen 79 EALEYAKER 87 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 777766655
No 289
>PRK07985 oxidoreductase; Provisional
Probab=38.03 E-value=2.1e+02 Score=27.11 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=24.4
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+.++++..+|.-|.++|..-...|.+++++-
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~ 80 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISY 80 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEec
Confidence 4566766678899999999999999877653
No 290
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=38.00 E-value=94 Score=31.60 Aligned_cols=48 Identities=21% Similarity=0.146 Sum_probs=35.2
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
+..|+..+.|.-|+.+|..++.+|.++++ +.. . +.|....+.+|++++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV-~d~-d----~~R~~~A~~~G~~~~ 249 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIV-TEV-D----PICALQAAMEGYEVM 249 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEE-EEC-C----hhhHHHHHhcCCEEc
Confidence 34444458999999999999999997554 322 2 356778888999764
No 291
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=37.90 E-value=97 Score=30.05 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=36.3
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++ ..+|..|.+++..|+.+|.+.++++... +.|...++.+|++.+.
T Consensus 178 vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 178 VVL-AGAGPLGLGMIGAARLKNPKKLIVLDLK-----DERLALARKFGADVVL 224 (350)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCcEEEEEcCC-----HHHHHHHHHcCCcEEe
Confidence 555 5679999999999999998876665443 3578888999997654
No 292
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=37.89 E-value=3e+02 Score=25.04 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=34.4
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.+++..++|..|.++|......|.+++++.. +.+..+.....++..|.++..+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r--~~~~~~~~~~~i~~~~~~~~~~ 64 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGR--DPAKLAAAAESLKGQGLSAHAL 64 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHHHHhcCceEEEE
Confidence 44555577888999999998889998666543 2221122334555667776655
No 293
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=37.65 E-value=1.3e+02 Score=29.03 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeC------CCHHHHHHHHHHHHhhcccCCcccc---
Q psy11239 76 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY------GNLKEAMNEAIKDWSNNILNSHYLI--- 146 (410)
Q Consensus 76 g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~------g~~~~~~~~~~~~~~~~~~~~~~~~--- 146 (410)
+.++|.+=..+|.++++|+++... +.-...++..|-....... .+...+...+.....+...+....+
T Consensus 65 A~aLa~aL~~lG~~~~ivtd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lIaIERp 141 (291)
T PF14336_consen 65 AAALARALQALGKEVVIVTDERCA---PVVKAAVRAAGLQGVDKVEIPPFFPDDFAQAFLEADGLLKEPRPDLLIAIERP 141 (291)
T ss_pred HHHHHHHHHHcCCeEEEEECHHHH---HHHHHHHHHHhhCcccccccccccccchhhhHHHHhhccccCCCCEEEEeCCc
Confidence 456777778899999999988654 3455566666655432210 1122333333333322211111111
Q ss_pred cccccCccccccc---cccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeec
Q psy11239 147 GTASGPHPYPTIV---RDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGR 197 (410)
Q Consensus 147 ~~~~~~~p~~~~~---~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~ 197 (410)
|....- -|.|+. +.++-.--.+++.+.. .+.....++|-||+=.|+
T Consensus 142 Gra~dG-~Y~nmrG~~I~~~~a~~D~lf~~a~----~~gi~tigIGDGGNEiGM 190 (291)
T PF14336_consen 142 GRAADG-NYYNMRGEDISHLVAPLDDLFLAAK----EPGIPTIGIGDGGNEIGM 190 (291)
T ss_pred ccCCCC-CEecCcCCcCccccccHHHHHHHhh----cCCCCEEEECCCchhccc
Confidence 111111 232321 2222221235555533 256677889999999997
No 294
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=37.59 E-value=2.1e+02 Score=24.72 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=31.2
Q ss_pred HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcCCCeEEEEccCCCCcCCc
Q psy11239 351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGISKKRT 404 (410)
Q Consensus 351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~~~~vigVe~~g~~~~~~ 404 (410)
.++.+.++ ...+|+||+.+|.-+.+.|+..++- ..-||||-+. +..+.|
T Consensus 45 ~~~~~~~~--~~~~~viIa~AG~~a~Lpgvva~~t--~~PVIgvP~~-~~~~~g 93 (150)
T PF00731_consen 45 LEFVKEYE--ARGADVIIAVAGMSAALPGVVASLT--TLPVIGVPVS-SGYLGG 93 (150)
T ss_dssp HHHHHHTT--TTTESEEEEEEESS--HHHHHHHHS--SS-EEEEEE--STTTTT
T ss_pred HHHHHHhc--cCCCEEEEEECCCcccchhhheecc--CCCEEEeecC-cccccC
Confidence 35555554 2357899999999888999988875 5778999544 333443
No 295
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=37.25 E-value=78 Score=27.38 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEcCCC-ccchhhhH----HHHHHCCCEEEEEeCCCHHHHHH
Q psy11239 256 GMHGVSTATSCCLLNLESIIYIGEND-YKRQNINV----KKIKLLGGTVYLVQYGNLKEAMN 312 (410)
Q Consensus 256 GN~g~a~A~~a~~~G~~~~vv~p~~~-~~~~~~~~----~~~~~~Ga~v~~v~~g~~~~~~~ 312 (410)
+|.+.+++..++++|..++++.|++- .+.....+ ...+..|.++..+ .+.++++.
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--~~~~e~l~ 72 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT--DDIEEALK 72 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE--SSHHHHHT
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE--eCHHHhcC
Confidence 69999999999999999999998751 12111112 2334458888886 33555543
No 296
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=37.23 E-value=2.2e+02 Score=25.76 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=34.3
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.+++..++|.-|.++|-.-...|.+.+++...... ........++..|++++...
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 59 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSP-RRVKWLEDQKALGFDFIASE 59 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChH-HHHHHHHHHHhcCCcEEEEE
Confidence 345666677999999999999999886654422211 11123444555676665443
No 297
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=37.18 E-value=1.9e+02 Score=27.72 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=32.2
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
+.+++ .++|..|.+++..|+.+|+..++++. ..+ .+...++.+|+.++
T Consensus 169 ~~vlI-~g~g~vg~~~~~~a~~~g~~~v~~~~--~~~---~~~~~~~~~g~~~~ 216 (344)
T cd08284 169 DTVAV-IGCGPVGLCAVLSAQVLGAARVFAVD--PVP---ERLERAAALGAEPI 216 (344)
T ss_pred CEEEE-ECCcHHHHHHHHHHHHcCCceEEEEc--CCH---HHHHHHHHhCCeEE
Confidence 45666 46789999999999999984444442 222 34556667888653
No 298
>PRK12828 short chain dehydrogenase; Provisional
Probab=36.98 E-value=2.3e+02 Score=25.24 Aligned_cols=55 Identities=11% Similarity=-0.058 Sum_probs=35.3
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.+++..++|--|.++|..-...|.+++++.....+ .......+...+.+++..+
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~D 62 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP--LSQTLPGVPADALRIGGID 62 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh--HHHHHHHHhhcCceEEEee
Confidence 456776677999999999888889987666543211 1122334555666666655
No 299
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=36.97 E-value=2.4e+02 Score=23.22 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=48.6
Q ss_pred HHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCceEEecCCCCCCCChhH
Q psy11239 262 TATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI 341 (410)
Q Consensus 262 ~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (410)
++...+..+.+..|+....... ..........+.+++.=..+++.+.+..|.+.. ..+.....++++.. +..+
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~Q~g~dLG~Rm~~a~~~~-~~g~~~vvliGsD~--P~l~-- 74 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDH--AAFRQLWLPSGFSFFPQQGGDLGERMANAFQQA-ARGYEPVVLIGSDC--PDLT-- 74 (122)
T ss_dssp ------TSSSEEEEEE----TT--HHHHHHHH-TTSEEEE--SSSHHHHHHHHHHHH-HTT-SEEEEE-SS---TT----
T ss_pred ccccccCCCcCEEEEEcCCccH--HHHhccccCCCCEEeecCCCCHHHHHHHHHHHH-HcCCCcEEEEcCCC--CCCC--
Confidence 3455667788888877332211 111112445667777655566999999999988 44345666666543 2221
Q ss_pred HHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchh
Q psy11239 342 VRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGS 375 (410)
Q Consensus 342 ~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg 375 (410)
... -.+.++.+ ...|.|+.|+--||
T Consensus 75 -~~~----l~~A~~~L----~~~d~VlgPa~DGG 99 (122)
T PF09837_consen 75 -PDD----LEQAFEAL----QRHDVVLGPAEDGG 99 (122)
T ss_dssp -HHH----HHHHHHHT----TT-SEEEEEBTTSS
T ss_pred -HHH----HHHHHHHh----ccCCEEEeeccCCC
Confidence 111 12333444 25699999998777
No 300
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=36.91 E-value=1e+02 Score=30.57 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=33.1
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++ .++|..|.+++..|+.+|.+.+++.+.. . .+....+.+||+.++
T Consensus 182 VlV-~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~-~----~~~~~a~~lGa~~~i 228 (375)
T PLN02178 182 LGV-NGLGGLGHIAVKIGKAFGLRVTVISRSS-E----KEREAIDRLGADSFL 228 (375)
T ss_pred EEE-EcccHHHHHHHHHHHHcCCeEEEEeCCh-H----HhHHHHHhCCCcEEE
Confidence 445 4679999999999999999854443322 1 245677889997544
No 301
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=36.83 E-value=2.2e+02 Score=24.84 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=43.0
Q ss_pred eEEecCchHHHHHHHHHHHHcCCcEEEEEcCC--CccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHcc
Q psy11239 249 IICETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNN 321 (410)
Q Consensus 249 ~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~--~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~ 321 (410)
+++..+.|..|..+|..=...|-.-++++... ........+..++..|++|.....+- -.+.+.++.+...++
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQR 78 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhc
Confidence 44447778888888887666665555555332 11122356788888999998775332 344566666655544
No 302
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=36.59 E-value=1.7e+02 Score=26.75 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=32.8
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
+.++++.++|.-|.++|..-...|.+++++-..... ......++..|.++..+
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~ 61 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELV---HEVAAELRAAGGEALAL 61 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHH---HHHHHHHHhcCCeEEEE
Confidence 456776667889999999888899887765432111 12233444556665443
No 303
>PRK12937 short chain dehydrogenase; Provisional
Probab=36.52 E-value=3.1e+02 Score=24.60 Aligned_cols=56 Identities=18% Similarity=0.123 Sum_probs=36.5
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+.+++..++|.-|.++|..-.+.|.+++++... ..+......+.++..+.++..+.
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 61 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAG-SAAAADELVAEIEAAGGRAIAVQ 61 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC-CHHHHHHHHHHHHhcCCeEEEEE
Confidence 345555777889999999999999987776532 22211223445566788777654
No 304
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=36.50 E-value=1.2e+02 Score=29.59 Aligned_cols=51 Identities=18% Similarity=0.121 Sum_probs=34.8
Q ss_pred CCc-eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHH-hcCCEEEEE
Q psy11239 63 KKR-IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIK-LLGGTVYLV 119 (410)
Q Consensus 63 ~~~-~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~-~~GA~v~~v 119 (410)
++. +++...+|..|.++...|+.+|.+.+++.. . +.|...++ .+||+-++-
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~--~----~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG--S----SQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC--C----HHHHHHHHHhcCCCEEEE
Confidence 344 555434599999999999999997544321 1 25777887 799975543
No 305
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=36.43 E-value=98 Score=32.39 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=37.0
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+++ -+.|..|++.+..++.+|..++++- .+ +.+++..+.+|++.+.++
T Consensus 167 VlV-iGaG~iGl~Aa~~ak~lGA~V~v~d-~~-----~~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 167 VLV-IGAGVAGLAAIGAANSLGAIVRAFD-TR-----PEVKEQVQSMGAEFLELD 214 (511)
T ss_pred EEE-ECCCHHHHHHHHHHHHCCCEEEEEe-CC-----HHHHHHHHHcCCeEEecc
Confidence 555 4889999999999999998744432 22 357889999999987765
No 306
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=36.35 E-value=1.9e+02 Score=26.68 Aligned_cols=55 Identities=9% Similarity=-0.075 Sum_probs=34.9
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+.++++.+++.-|.++|......|.+++++-. +.+........++..|++++.+.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDI--NQELVDKGLAAYRELGIEAHGYV 65 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeC--CHHHHHHHHHHHHhcCCceEEEE
Confidence 34555577778999999988899998766642 22211223344556677766553
No 307
>PRK12743 oxidoreductase; Provisional
Probab=36.34 E-value=1.8e+02 Score=26.58 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=33.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
.++++.++|.-|.++|......|.+.+++....... ...-...++.+|.++..+.
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEG-AKETAEEVRSHGVRAEIRQ 58 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHHHhcCCceEEEE
Confidence 466666678899999999988998876664322111 0112345556676665543
No 308
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=36.23 E-value=1.3e+02 Score=29.43 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=34.7
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++. ++|-.|.+++..|+.+|.+.++++..+ +.|+...+.+||+-++
T Consensus 180 VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~~-----~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 180 VAVI-GCGGVGDAAIAGAALAGASKIIAVDID-----DRKLEWAREFGATHTV 226 (358)
T ss_pred EEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEE
Confidence 5554 679999999999999999755555322 3578888999996543
No 309
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=36.19 E-value=1.4e+02 Score=28.75 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=34.0
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++. ++|-.|.+++..|+.+|.+-++++..+ +.|++..+.+||+.+.
T Consensus 167 vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~~~-----~~~~~~~~~~ga~~~i 213 (339)
T cd08239 167 VLVV-GAGPVGLGALMLARALGAEDVIGVDPS-----PERLELAKALGADFVI 213 (339)
T ss_pred EEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEE
Confidence 5554 679999999999999999933333222 2578888999996544
No 310
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=36.17 E-value=1.2e+02 Score=30.12 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=32.8
Q ss_pred HcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 243 FLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 243 ~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
..+.+.+++ .++|..+..+++.+...+-.-.|++|..+.. .....+...|++++.++
T Consensus 43 ~~g~~~~v~-~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~---~~~~~~~~~G~~~v~vd 99 (376)
T TIGR02379 43 RTGTKKALL-TPSCTAALEMAALLLDIQPGDEVIMPSYTFV---STANAFVLRGAKIVFVD 99 (376)
T ss_pred HhCCCeEEE-eCCHHHHHHHHHHHcCCCCcCEEEECCCCcH---HHHHHHHHcCCEEEEEe
Confidence 345566665 6677766655544332222345666654443 34455667788888876
No 311
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=36.10 E-value=2e+02 Score=25.01 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=31.3
Q ss_pred CCceEEEeCccHHH---HHHHHHHHHcCCcEEEEecc---CCccccchhHHHHHhcCCEEEEE
Q psy11239 63 KKRIICETGAGMHG---VSTATSCCLLNLESIIYIGE---NDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 63 ~~~~v~~~ssGN~g---~a~A~~a~~~G~~~~iv~p~---~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
...+++-+++||.| .++|..-+..|++++|++.. ..++......+.++.+|.+++..
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 34455556776643 44455556689999996532 22222235667777888666543
No 312
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=36.07 E-value=2.5e+02 Score=27.31 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=34.8
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++...+|.-|..+.-.|+.+|. +++++-. .+ .+.+.++.+||+.+.
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~--s~---~k~~~~~~lGAd~vi 192 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVS--SS---EKLELLKELGADHVI 192 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCC-cEEEEec--CH---HHHHHHHhcCCCEEE
Confidence 4566657788888888888999999 4444422 22 455588999998655
No 313
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=36.06 E-value=1.3e+02 Score=29.54 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=33.9
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++ .++|..|.+++..++.+|..-++++... +.|++.++.+|++-+.
T Consensus 188 vlV-~G~g~vG~~~~~~a~~~G~~~Vi~~~~~-----~~~~~~~~~~ga~~~i 234 (365)
T cd08277 188 VAV-FGLGAVGLSAIMGAKIAGASRIIGVDIN-----EDKFEKAKEFGATDFI 234 (365)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCCcEe
Confidence 455 4679999999999999999534444222 3678888999996443
No 314
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=36.00 E-value=1.3e+02 Score=30.15 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=59.4
Q ss_pred EeeCCCCCCCchhhhHHHHHHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCC
Q psy11239 35 LKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGG 114 (410)
Q Consensus 35 ~K~E~~nptGS~K~R~~~~~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA 114 (410)
+|...+++ |.+=.+ .+-..++-.+.+..++. +||..+..+|+.+-..|=--.|++|.-+. ......+-..||
T Consensus 25 l~sg~i~~-G~~v~~---FE~~~ae~~G~k~ava~-~sgT~AL~laL~al~ig~GDeVI~ps~Tf---vATan~i~~~Ga 96 (374)
T COG0399 25 LKSGWLTG-GPFVRR---FEQAFAEYLGVKYAVAV-SSGTAALHLALLALAIGPGDEVIVPSFTF---VATANAVLLVGA 96 (374)
T ss_pred HHcCCeec-ChHHHH---HHHHHHHHhCCCeEEEe-cChHHHHHHHHHhcCCCCCCEEEecCCch---HHHHHHHHHcCC
Confidence 34455555 555444 44456777787777774 89999999999866677777899999776 478889999999
Q ss_pred EEEEEeC
Q psy11239 115 TVYLVQY 121 (410)
Q Consensus 115 ~v~~v~~ 121 (410)
+.+.|+-
T Consensus 97 ~PVFvDi 103 (374)
T COG0399 97 KPVFVDI 103 (374)
T ss_pred eEEEEec
Confidence 9999873
No 315
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=35.98 E-value=62 Score=23.54 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.4
Q ss_pred CccHHHHHHHHHHHHcCCcEEEEecc
Q psy11239 71 GAGMHGVSTATSCCLLNLESIIYIGE 96 (410)
Q Consensus 71 ssGN~g~a~A~~a~~~G~~~~iv~p~ 96 (410)
++|=.|.+.|+..++.|++++|+=-.
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecC
Confidence 67999999999999999988877533
No 316
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=35.88 E-value=1.1e+02 Score=30.16 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=43.4
Q ss_pred EEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHH--HHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHH
Q psy11239 273 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKE--AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG 350 (410)
Q Consensus 273 ~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g 350 (410)
..++.-.+..+ .-...++.+| ++.++....+.. ..++....+++.+ -.+.+.... .++|-.. ..
T Consensus 2 ~~i~~G~g~l~---~l~~~l~~~g-r~lvVt~~~~~~~~~~~~v~~~L~~~~-i~~~~~~~~-~~~p~~~--------~v 67 (366)
T PF00465_consen 2 TKIIFGRGALE---ELGEELKRLG-RVLVVTDPSLSKSGLVDRVLDALEEAG-IEVQVFDGV-GPNPTLE--------DV 67 (366)
T ss_dssp SEEEESTTGGG---GHHHHHHCTT-EEEEEEEHHHHHHTHHHHHHHHHHHTT-CEEEEEEEE-SSS-BHH--------HH
T ss_pred CcEEEccCHHH---HHHHHHHhcC-CEEEEECchHHhCccHHHHHHHHhhCc-eEEEEEecC-CCCCcHH--------HH
Confidence 34555444433 3344677788 877764333322 3555555555542 122222211 1133211 12
Q ss_pred HHHHHhhhhcCCCCCEEEEccCchhHH
Q psy11239 351 YEIHQQLNFNFYNKKYILACVGGGSNA 377 (410)
Q Consensus 351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~ 377 (410)
.|+.+++.. ..+| .|+++|+|+.+
T Consensus 68 ~~~~~~~~~--~~~D-~IIaiGGGS~~ 91 (366)
T PF00465_consen 68 DEAAEQARK--FGAD-CIIAIGGGSVM 91 (366)
T ss_dssp HHHHHHHHH--TTSS-EEEEEESHHHH
T ss_pred HHHHHHHHh--cCCC-EEEEcCCCCcC
Confidence 466666652 3567 56788888875
No 317
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=35.83 E-value=2.9e+02 Score=28.33 Aligned_cols=104 Identities=21% Similarity=0.323 Sum_probs=59.1
Q ss_pred CchhhHHHHHHHHHH-HH--HcCCCceEEecCchHHHHHHHHHHHHcCCc-EEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 226 TGAHKMNNSIAQSLL-AK--FLKKKRIICETGAGMHGVSTATSCCLLNLE-SIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 226 tgS~K~R~a~~~~~~-a~--~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~-~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
-|.--.|.+....+. .. ....+.+++ .|+..++..+ .++.+=-+ -+|++.+-+.. .-+..++.+|++++.
T Consensus 132 ~G~~~LR~~ia~~l~~~~g~~~~~~~Iii-T~G~q~al~l--~~~~l~~pGd~v~vE~PtY~---~~~~~~~~~g~~~~~ 205 (459)
T COG1167 132 AGLPELREAIAAYLLARRGISCEPEQIVI-TSGAQQALDL--LLRLLLDPGDTVLVEDPTYP---GALQALEALGARVIP 205 (459)
T ss_pred CCcHHHHHHHHHHHHHhcCCccCcCeEEE-eCCHHHHHHH--HHHHhCCCCCEEEEcCCCcH---HHHHHHHHcCCcEEe
Confidence 466677766555443 11 222345655 4555555553 34443333 55666443444 667889999999998
Q ss_pred EeCCC---HHHHHHHHHHHHHccCCCceEEecCCCCCCCC
Q psy11239 302 VQYGN---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPY 338 (410)
Q Consensus 302 v~~g~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 338 (410)
++.++ .-++++++.+.. . ..-+|+++++.||...
T Consensus 206 vp~d~~G~~~e~le~~~~~~--~-~k~~y~~P~~qNPtG~ 242 (459)
T COG1167 206 VPVDEDGIDPEALEEALAQW--K-PKAVYVTPTFQNPTGV 242 (459)
T ss_pred cCCCCCCCCHHHHHHHHhhc--C-CcEEEECCCCCCCCCC
Confidence 87433 445555554433 1 2468888887755443
No 318
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=35.83 E-value=2.3e+02 Score=25.64 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=33.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
.+++..++|.-|.++|......|.+.+++-.. +++.....+.++..|.++..+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~--~~~~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLN--EETAKETAKEINQAGGKAVAYK 55 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEE
Confidence 35565567889999998888999876555432 1111223345566676665444
No 319
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=35.78 E-value=1.9e+02 Score=30.33 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHcC-CcEEEEEcCCC-ccchhhhHHHHHHCCCEEEEE
Q psy11239 256 GMHGVSTATSCCLLN-LESIIYIGEND-YKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 256 GN~g~a~A~~a~~~G-~~~~vv~p~~~-~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+|.+.+++.+++.+| ++++++.|..- ++ ...+..++..|+++..+
T Consensus 186 ~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p--~~~~~~a~~~G~~v~i~ 232 (525)
T PRK13376 186 GRTVHSKVNGLKIFKNVKVDLIAPEELAMP--EHYVEKMKKNGFEVRIF 232 (525)
T ss_pred CcHHHHHHHHHHhcCCcEEEEECCccccCC--HHHHHHHHHcCCeEEEE
Confidence 589999999999999 99999999753 23 23345566678887765
No 320
>PRK12939 short chain dehydrogenase; Provisional
Probab=35.73 E-value=2e+02 Score=25.90 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=23.6
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEE
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIY 93 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv 93 (410)
+.+++..++|.-|.++|-.-...|.+.+++
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 446666667999999999999999886655
No 321
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=35.56 E-value=1.1e+02 Score=30.09 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=39.6
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHh-cCCEEEEEe
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKL-LGGTVYLVQ 120 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~-~GA~v~~v~ 120 (410)
+++..++|.-|...+..++.+|...+|++..+ +.|+++-+. +|++++.-+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~-----~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS-----PERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-----HHHHHHHHHhCCCeEeecC
Confidence 34445899999999999999999999999544 367888877 777776554
No 322
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=35.55 E-value=1.4e+02 Score=28.42 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=32.8
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
+++. ++|-.|.+++..|+.+|++.+++. .. +.+...++.+|+..+
T Consensus 159 vlV~-g~g~vg~~~~q~a~~~G~~vi~~~-~~-----~~~~~~~~~~g~~~~ 203 (319)
T cd08242 159 VAVL-GDGKLGLLIAQVLALTGPDVVLVG-RH-----SEKLALARRLGVETV 203 (319)
T ss_pred EEEE-CCCHHHHHHHHHHHHcCCeEEEEc-CC-----HHHHHHHHHcCCcEE
Confidence 5554 579999999999999999944332 22 257778888998754
No 323
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=35.39 E-value=1.3e+02 Score=28.85 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=32.8
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|-.|.+++..|+.+|.+-++++.. + + .+.+.++.+|++.+.
T Consensus 165 ~~vlV-~G~G~vG~~~~~~ak~~G~~~vi~~~~-~-~---~~~~~~~~~ga~~~i 213 (339)
T cd08239 165 DTVLV-VGAGPVGLGALMLARALGAEDVIGVDP-S-P---ERLELAKALGADFVI 213 (339)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC-C-H---HHHHHHHHhCCCEEE
Confidence 45555 466889999999999999993333421 2 2 345566778886543
No 324
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=35.29 E-value=1.5e+02 Score=28.81 Aligned_cols=48 Identities=23% Similarity=0.191 Sum_probs=34.6
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
+++- ++|..|.+++..|+.+|++.++++..+ +.|...++.+|++.+..
T Consensus 176 vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~~~-----~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 176 ALVL-GAGPIGLLTILALKAAGASKIIVSEPS-----EARRELAEELGATIVLD 223 (351)
T ss_pred EEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEEC
Confidence 5554 578999999999999999655454322 35777888899976543
No 325
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=35.27 E-value=2.2e+02 Score=27.57 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=35.5
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|..|.+++..|+.+|...++++.. .+ .+.+.++.+|++.+.
T Consensus 176 ~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~---~~~~~~~~~g~~~v~ 224 (350)
T cd08256 176 DVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KD---ERLALARKFGADVVL 224 (350)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CH---HHHHHHHHcCCcEEe
Confidence 45666 667899999999999999887666632 22 455677778886554
No 326
>PRK07324 transaminase; Validated
Probab=35.18 E-value=2.8e+02 Score=27.35 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=39.6
Q ss_pred CchhhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 226 TGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 226 tgS~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
.|.-..|.+...... ....+.+++ .+++..+..+++.+- ++-.-.|+++..... .-...++.+|++++.++
T Consensus 62 ~G~~~lr~~ia~~~~--~~~~~~vi~-t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~---~~~~~~~~~g~~v~~v~ 132 (373)
T PRK07324 62 EGSPEFKEAVASLYQ--NVKPENILQ-TNGATGANFLVLYAL-VEPGDHVISVYPTYQ---QLYDIPESLGAEVDYWQ 132 (373)
T ss_pred CCCHHHHHHHHHHhc--CCChhhEEE-cCChHHHHHHHHHHh-CCCCCEEEEcCCCch---hHHHHHHHcCCEEEEEe
Confidence 466667776555331 123356665 666667666655443 332234555443333 33456778999998886
No 327
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=35.17 E-value=2.1e+02 Score=27.66 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=32.7
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|..|.+++..|+.+|.+.++++.. .+ .+.+.++.+|++.++
T Consensus 174 ~~vlI-~g~g~vG~~a~q~a~~~G~~~v~~~~~--~~---~~~~~~~~~ga~~~i 222 (351)
T cd08233 174 DTALV-LGAGPIGLLTILALKAAGASKIIVSEP--SE---ARRELAEELGATIVL 222 (351)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CH---HHHHHHHHhCCCEEE
Confidence 45555 456889999999999999965555521 22 345566677887544
No 328
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=34.93 E-value=2.1e+02 Score=27.72 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=32.3
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|..|.+++..|+.+|.+.+++. ..+ .+++.++.+|++.++
T Consensus 168 ~~VlV-~G~G~vG~~a~~~a~~~G~~vi~~~---~~~---~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 168 DLVIV-IGAGGVGGYMVQTAKAMGAAVVAID---IDP---EKLEMMKGFGADLTL 215 (349)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCeEEEEc---CCH---HHHHHHHHhCCceEe
Confidence 35555 5569999999999999999744332 122 345667778886543
No 329
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=34.87 E-value=3e+02 Score=25.11 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=32.5
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++.++|.-|.++|..-...|.+++++-... . ....+.++..+.++..+.
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~-~---~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE-P---TETIEQVTALGRRFLSLT 63 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc-h---HHHHHHHHhcCCeEEEEE
Confidence 4566666778999999999999998876542211 1 123344455555554443
No 330
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=34.77 E-value=1.1e+02 Score=32.11 Aligned_cols=49 Identities=12% Similarity=0.283 Sum_probs=36.6
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
.++++ .+.|..|.+.+..|+.+|-+ ++++ + .. ..++++.+.+||+.+.+
T Consensus 166 ~kVlV-iGaG~iGL~Ai~~Ak~lGA~-V~a~-D--~~--~~rle~aeslGA~~v~i 214 (509)
T PRK09424 166 AKVLV-IGAGVAGLAAIGAAGSLGAI-VRAF-D--TR--PEVAEQVESMGAEFLEL 214 (509)
T ss_pred CEEEE-ECCcHHHHHHHHHHHHCCCE-EEEE-e--CC--HHHHHHHHHcCCeEEEe
Confidence 45666 99999999999999999985 3333 2 22 35678889999996544
No 331
>PRK08862 short chain dehydrogenase; Provisional
Probab=34.57 E-value=1.7e+02 Score=26.61 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=33.3
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
.+++...++.-|+++|......|.+++++-. +.+..+...+.++..|.+++.+
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r--~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQ--DQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcC--CHHHHHHHHHHHHhcCCCeEEE
Confidence 4444355667899999999999998776643 2222122344566678776554
No 332
>PRK08303 short chain dehydrogenase; Provisional
Probab=34.38 E-value=2.8e+02 Score=26.60 Aligned_cols=31 Identities=10% Similarity=-0.071 Sum_probs=21.4
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+.++++.+++--|.++|..-+..|.+++++-
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~ 39 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTG 39 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3456655556677788877888898766654
No 333
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=34.34 E-value=1.8e+02 Score=27.94 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=33.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCC-cEEEEeccCCccccchhHHHHHh-cCCEEEEE
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNL-ESIIYIGENDYKRQNINVKKIKL-LGGTVYLV 119 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~-~~~iv~p~~~~~~~~~k~~~~~~-~GA~v~~v 119 (410)
.+++...+|..|.++...|+.+|. +.+++... ++|...++. +||+-+..
T Consensus 157 ~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s------~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 157 TMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS------DEKCQLLKSELGFDAAIN 207 (345)
T ss_pred EEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC------HHHHHHHHHhcCCcEEEE
Confidence 455643459999999999999998 45444322 256777765 99976543
No 334
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=34.21 E-value=3.3e+02 Score=24.62 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=34.1
Q ss_pred eEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 249 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 249 ~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+++..++|.-|.++|......|.+++++-.. .++.+.....++..|.++..+.
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~--~~~~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVAVADLN--EETAKETAKEINQAGGKAVAYK 55 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEE
Confidence 4444777888999999888999987666532 2221233345666787766553
No 335
>PRK07550 hypothetical protein; Provisional
Probab=34.05 E-value=4.4e+02 Score=25.91 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=43.5
Q ss_pred CchhhHHHHHHHHHHHH---HcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 226 TGAHKMNNSIAQSLLAK---FLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 226 tgS~K~R~a~~~~~~a~---~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
.|....|.++....... ....+.+++ .++++++..++..+- .+-.-.|++|+.... .....++..|++++.+
T Consensus 67 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~---~~~~~~~~~g~~~~~v 141 (386)
T PRK07550 67 EGLPELREAYAAHYSRLYGAAISPEQVHI-TSGCNQAFWAAMVTL-AGAGDEVILPLPWYF---NHKMWLDMLGIRPVYL 141 (386)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcceEEE-ecCcHHHHHHHHHHh-cCCCCEEEEcCCCCc---chHHHHHhcCCEEEEE
Confidence 46777787766543221 122345665 666677776655443 344456777654333 3344667899999988
Q ss_pred eC
Q psy11239 303 QY 304 (410)
Q Consensus 303 ~~ 304 (410)
+-
T Consensus 142 ~~ 143 (386)
T PRK07550 142 PC 143 (386)
T ss_pred ec
Confidence 64
No 336
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=33.98 E-value=2.1e+02 Score=27.25 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=34.8
Q ss_pred ceEEE-eCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239 65 RIICE-TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 65 ~~v~~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
.+++- ..+|..|.++...|+.+|.+.+++.+ . +.|.+.++.+|++-+..
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~--~----~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR--R----KEQVDLLKKIGAEYVLN 194 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC--C----HHHHHHHHHcCCcEEEE
Confidence 34443 36689999999999999997544332 1 25788888999986544
No 337
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.97 E-value=2.1e+02 Score=25.77 Aligned_cols=55 Identities=18% Similarity=0.055 Sum_probs=32.3
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.+++..++|--|.++|......|.+++++.... +........++..|+++..+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ--EKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEE
Confidence 3466655669999999999988998766554321 111122333444566554443
No 338
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=33.94 E-value=55 Score=32.80 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=23.7
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEecc
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGE 96 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 96 (410)
+||. ++|..|.+.|+.|+..|.+++++=-.
T Consensus 2 VvVI-G~G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 2 VVVI-GGGLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp EEEE--SSHHHHHHHHHHHHTTT-EEEEESS
T ss_pred EEEE-CCCHHHHHHHHHHhhhcCeEEEEEee
Confidence 5664 89999999999999999988877543
No 339
>PRK06847 hypothetical protein; Provisional
Probab=33.92 E-value=58 Score=31.98 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.9
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
..++|. ++|-.|.++|...++.|++++|+=
T Consensus 5 ~~V~IV-GaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 5 KKVLIV-GGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred ceEEEE-CCCHHHHHHHHHHHhCCCCEEEEe
Confidence 456775 999999999999999999988773
No 340
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=33.85 E-value=1.3e+02 Score=29.18 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=34.2
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
+++. .+|..|.+++..|+.+|...++.+... +.|....+.+|++-+
T Consensus 170 vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~ 215 (351)
T cd08285 170 VAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR-----PNRVELAKEYGATDI 215 (351)
T ss_pred EEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCceE
Confidence 5554 679999999999999999755554333 257788899998644
No 341
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=33.50 E-value=83 Score=33.19 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=32.4
Q ss_pred HHHcC--CcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHH
Q psy11239 266 CCLLN--LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAM 311 (410)
Q Consensus 266 a~~~G--~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~ 311 (410)
+.++| +|.+|++..++++....-+.++++||++++.+++...++..
T Consensus 411 ~~RhGqKlPL~VlvDnGsTeEDipA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 411 AHRHGQKLPLLVLVDNGSTEEDIPAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred HHhcCCccceEEEEcCCCcccccHHHHHHHhcCCCEEEEcCCCCcchh
Confidence 44444 66777886666555556788999999999999866544444
No 342
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=33.34 E-value=2.2e+02 Score=27.58 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHH-HHHCCCEEEEE
Q psy11239 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKK-IKLLGGTVYLV 302 (410)
Q Consensus 255 sGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~-~~~~Ga~v~~v 302 (410)
.+|..++++.+++++|++++++.|+.-.+. ...++. .+..|.++...
T Consensus 161 ~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~-~~~~~~~~~~~g~~~~~~ 208 (304)
T PRK00779 161 GNNVANSLLLAAALLGFDLRVATPKGYEPD-PEIVEKIAKETGASIEVT 208 (304)
T ss_pred CCccHHHHHHHHHHcCCEEEEECCcccCCC-HHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999999753221 111121 45567776654
No 343
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=33.22 E-value=1.1e+02 Score=28.74 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=30.7
Q ss_pred ceEEecCch-HHHHHHHHH--HHHcCCcEEEEEcCCCccch-hhhHHHHHHCCCEE
Q psy11239 248 RIICETGAG-MHGVSTATS--CCLLNLESIIYIGENDYKRQ-NINVKKIKLLGGTV 299 (410)
Q Consensus 248 ~~v~~~ssG-N~g~a~A~~--a~~~G~~~~vv~p~~~~~~~-~~~~~~~~~~Ga~v 299 (410)
++++-++.| |-|-+++.+ -+..|+++.+|+++...... ..+...++.+|..+
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQSSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCCCChHHHHHHHHHHHHcCCCE
Confidence 454447777 555555554 44469999999964322211 23445667777664
No 344
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=33.14 E-value=1.8e+02 Score=28.53 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=32.6
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++ .++|.-|.+++..|+.+|.+.+++.... . .+....+.+||+.+.
T Consensus 187 VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~~-~----~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 187 LGV-AGLGGLGHVAVKIGKAFGLKVTVISSSS-N----KEDEAINRLGADSFL 233 (360)
T ss_pred EEE-ECCCHHHHHHHHHHHHCCCEEEEEeCCc-c----hhhhHHHhCCCcEEE
Confidence 555 5779999999999999999855443222 1 234566789997554
No 345
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=33.13 E-value=2.3e+02 Score=27.80 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=33.8
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|-.|.+++..|+.+|.+.++++. ..+ .+++.++.+|++.+.
T Consensus 193 ~~VlV-~G~G~vG~~a~~lak~~G~~~Vi~~~--~~~---~r~~~a~~~Ga~~~i 241 (371)
T cd08281 193 QSVAV-VGLGGVGLSALLGAVAAGASQVVAVD--LNE---DKLALARELGATATV 241 (371)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCcEEEEc--CCH---HHHHHHHHcCCceEe
Confidence 45666 56788999999999999996444442 122 456677889986543
No 346
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=33.02 E-value=1.2e+02 Score=28.26 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=36.8
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHC-CCEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL-GGTVY 300 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~-Ga~v~ 300 (410)
+++++ .++|+.|.-+|...+..+.+++++.+.......+.....++.. |.+++
T Consensus 142 ~~v~V-iG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~ 195 (300)
T TIGR01292 142 KEVAV-VGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFL 195 (300)
T ss_pred CEEEE-ECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEE
Confidence 45666 8999999999999999999999988654322122334455555 66654
No 347
>PRK00865 glutamate racemase; Provisional
Probab=33.01 E-value=2.4e+02 Score=26.53 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=47.0
Q ss_pred EEEEeCCC-HHHHHHHHHHHHHccCCCceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHH
Q psy11239 299 VYLVQYGN-LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNA 377 (410)
Q Consensus 299 v~~v~~g~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~ 377 (410)
|-+.++|- =-...++.++..-+. +.+|+-.+.. .||..-..+--.....|+++.+. ...+|.||++|=|-...
T Consensus 8 IgvfDSGiGGLtvl~~i~~~lp~~--~~iY~~D~~~--~PYG~ks~~~i~~~~~~~~~~L~--~~g~d~iVIaCNTa~~~ 81 (261)
T PRK00865 8 IGVFDSGVGGLTVLREIRRLLPDE--HIIYVGDTAR--FPYGEKSEEEIRERTLEIVEFLL--EYGVKMLVIACNTASAV 81 (261)
T ss_pred EEEEECCccHHHHHHHHHHHCCCC--CEEEEecCCC--CCCCCCCHHHHHHHHHHHHHHHH--hCCCCEEEEeCchHHHH
Confidence 44555553 122233333333222 3455544433 67732211111123457777776 24689999999886543
Q ss_pred HHHHHHHhcC-CCeEEEEccC
Q psy11239 378 LGIFYTFINS-NFKLVAIESG 397 (410)
Q Consensus 378 ~Gi~~~~~~~-~~~vigVe~~ 397 (410)
+ ...+++. ++.|+|++|.
T Consensus 82 -~-l~~lr~~~~iPvigi~~a 100 (261)
T PRK00865 82 -A-LPDLRERYDIPVVGIVPA 100 (261)
T ss_pred -H-HHHHHHhCCCCEEeeHHH
Confidence 2 2344433 7888888764
No 348
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=32.96 E-value=1.1e+02 Score=31.14 Aligned_cols=47 Identities=26% Similarity=0.173 Sum_probs=33.6
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
+++++ .+.|.-|+.+|..++.+|.++++ + +.++ .+....+.+|++++
T Consensus 203 ktVvV-iG~G~IG~~va~~ak~~Ga~ViV-~-d~d~----~R~~~A~~~G~~~~ 249 (413)
T cd00401 203 KVAVV-AGYGDVGKGCAQSLRGQGARVIV-T-EVDP----ICALQAAMEGYEVM 249 (413)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHCCCEEEE-E-ECCh----hhHHHHHhcCCEEc
Confidence 45555 99999999999999999997555 4 1122 34556667787654
No 349
>PRK07985 oxidoreductase; Provisional
Probab=32.78 E-value=3.8e+02 Score=25.34 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=33.0
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.++++.++|--|.++|......|.+++++-...+.+..+.....++..|.+++.+
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLL 105 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEE
Confidence 34555477778899999998899998776543212111111222344567666544
No 350
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=32.77 E-value=1.1e+02 Score=27.48 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=33.5
Q ss_pred HHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEEEccC
Q psy11239 349 IGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESG 397 (410)
Q Consensus 349 ~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vigVe~~ 397 (410)
.+.++++++.+.+-.||+||+-+++|=..+-+..-+... ++..+.|+-.
T Consensus 15 ~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y 64 (192)
T COG2236 15 LCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHY 64 (192)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEe
Confidence 556777777666779999998888887777776555432 4555555443
No 351
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=32.70 E-value=2.2e+02 Score=24.58 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=36.3
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
..+++ .++||.|...+..+..+|.+.+++- ... .+++..+..++..+.++
T Consensus 21 ~~vvv-~G~G~vg~gA~~~~~~lGa~v~~~d--~~~----~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 21 AKVVV-TGAGRVGQGAAEIAKGLGAEVVVPD--ERP----ERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -EEEE-ESTSHHHHHHHHHHHHTT-EEEEEE--SSH----HHHHHHHHTTTEESEET
T ss_pred eEEEE-ECCCHHHHHHHHHHhHCCCEEEecc--CCH----HHHHhhhcccCceEEEc
Confidence 45566 8999999999999999999866553 222 45567778899877763
No 352
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=32.65 E-value=1.6e+02 Score=28.47 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=34.1
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+++++ .++|..|.+++..|+.+|.+.++++.. .+ .+++.++.+|++-++
T Consensus 162 ~~vlV-~G~g~vG~~~~~~a~~~G~~~v~~~~~--~~---~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 162 KNVII-IGAGTIGLLAIQCAVALGAKSVTAIDI--NS---EKLALAKSLGAMQTF 210 (347)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCeEEEECC--CH---HHHHHHHHcCCceEe
Confidence 46666 467899999999999999986555521 22 345567778886443
No 353
>PRK05693 short chain dehydrogenase; Provisional
Probab=32.62 E-value=3.4e+02 Score=25.06 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=33.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
.++++..+|--|.++|......|.+++++... ..+...+...+.+.+.++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~------~~~~~~~~~~~~~~~~~D 52 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK------AEDVEALAAAGFTAVQLD 52 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC------HHHHHHHHHCCCeEEEee
Confidence 45665567888999998888889887665432 134455555666666565
No 354
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=32.36 E-value=1.3e+02 Score=30.74 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHc-CCcEEEEEcCCC-ccchhhhHHHHHHCCCEEEEE
Q psy11239 256 GMHGVSTATSCCLL-NLESIIYIGEND-YKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 256 GN~g~a~A~~a~~~-G~~~~vv~p~~~-~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+|.+.+++.+++.+ |++++++.|++- ++ ...+..++..|..|..+
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~--~~~~~~~~~~G~~v~~~ 299 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEMP--AYIVEQISRNGHVIEQT 299 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCccccC--HHHHHHHHhcCCeEEEE
Confidence 58999999997665 999999999763 22 22334455567766554
No 355
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=32.35 E-value=1.8e+02 Score=28.92 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=38.4
Q ss_pred HHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeC
Q psy11239 57 LAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121 (410)
Q Consensus 57 ~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~ 121 (410)
+++..+...+++ ++||..+..+++.+...+=.-.|++|..+. +.....+...|++++.++.
T Consensus 40 la~~~g~~~~v~-~~sgt~aL~~~l~al~~~pGd~Viv~~~t~---~~~~~~~~~~G~~~v~vd~ 100 (376)
T TIGR02379 40 LENRTGTKKALL-TPSCTAALEMAALLLDIQPGDEVIMPSYTF---VSTANAFVLRGAKIVFVDI 100 (376)
T ss_pred HHHHhCCCeEEE-eCCHHHHHHHHHHHcCCCCcCEEEECCCCc---HHHHHHHHHcCCEEEEEec
Confidence 344456666666 477877776665543222224566666554 3556777889999999873
No 356
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=32.19 E-value=1.7e+02 Score=24.30 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHH
Q psy11239 259 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIK 316 (410)
Q Consensus 259 g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~ 316 (410)
|..+|-.....|...+|+-- .-+ .-...++..|-+|+..+.++.++++....+
T Consensus 54 G~~~a~~l~~~gvdvvi~~~--iG~---~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~ 106 (121)
T COG1433 54 GIRIAELLVDEGVDVVIASN--IGP---NAYNALKAAGIKVYVAPGGTVEEAIKAFLE 106 (121)
T ss_pred hHHHHHHHHHcCCCEEEECc--cCH---HHHHHHHHcCcEEEecCCCCHHHHHHHHhc
Confidence 55677778888888877642 222 456788999999999876667777766554
No 357
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=32.13 E-value=2.1e+02 Score=26.26 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=22.9
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+.++++.+++.-|.++|..-...|.+++++.
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 39 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTY 39 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 4566655667788888888888898876653
No 358
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=32.12 E-value=1.2e+02 Score=32.07 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=37.7
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCc-------------c--chhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDY-------------K--RQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~-------------~--~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|-.|.+.|..++++|++++++=..... + .....++.++.+|++++.
T Consensus 138 ~~V~V-IGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 138 KRVAV-IGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 35555 899999999999999999997776321110 0 112456677889998765
No 359
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=32.12 E-value=3.4e+02 Score=26.25 Aligned_cols=110 Identities=18% Similarity=0.211 Sum_probs=58.0
Q ss_pred CCCchhhHHHHHHHHHHHH---HcCCC-ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEE
Q psy11239 224 NFTGAHKMNNSIAQSLLAK---FLKKK-RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTV 299 (410)
Q Consensus 224 ~ptgS~K~R~a~~~~~~a~---~~g~~-~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v 299 (410)
.+.|..-.|.++....... ..... .+++ .++...+..++..+...+-..+|++|..... .-...++..|.++
T Consensus 42 ~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~-~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~---~~~~~~~~~g~~~ 117 (363)
T PF00155_consen 42 PPQGYPELREAIADFLGRRYGVPVDPEANILV-TSGAQAALFLLLRLLKINPGDTVLVPDPCYP---SYIEAARLLGAEV 117 (363)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEE-ESHHHHHHHHHHHHHHSSTTSEEEEEESSST---HHHHHHHHTTSEE
T ss_pred CchhhHHHHHHHHHHhhhccCcccccceEEEE-ecccccchhhhhhcccccccccceecCCccc---cccccccccCcee
Confidence 3456667777765544311 22334 5555 5555666666555554333445666544444 4566788899999
Q ss_pred EEEeC----C-C-HHHHHHHHHHHHHccC-CCceEEecCCCCCCC
Q psy11239 300 YLVQY----G-N-LKEAMNEAIKDWSNNI-LNSHYLIGTASGPHP 337 (410)
Q Consensus 300 ~~v~~----g-~-~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~ 337 (410)
+.++- + . -.+.+++..+...... ....+++.+..||.+
T Consensus 118 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG 162 (363)
T PF00155_consen 118 IPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTG 162 (363)
T ss_dssp EEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTT
T ss_pred eeccccccccccccccccccccccccccccccceeeecccccccc
Confidence 98871 1 1 2344444444433221 013555555554443
No 360
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=32.11 E-value=1.3e+02 Score=26.79 Aligned_cols=61 Identities=13% Similarity=-0.040 Sum_probs=39.7
Q ss_pred HHHHcCCCceEEecCchHHHH-HHHHHHHHcCCcEEEEEcCCCcc---chhhhHHHHHHCCCEEE
Q psy11239 240 LAKFLKKKRIICETGAGMHGV-STATSCCLLNLESIIYIGENDYK---RQNINVKKIKLLGGTVY 300 (410)
Q Consensus 240 ~a~~~g~~~~v~~~ssGN~g~-a~A~~a~~~G~~~~vv~p~~~~~---~~~~~~~~~~~~Ga~v~ 300 (410)
..++.+.++++++.-..|.|. +.+..|..+|++++++....... .....+..|+..|++|+
T Consensus 132 ~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 132 YLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 344678888887555556665 45666888899988887543221 23345667777788763
No 361
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=32.10 E-value=1.5e+02 Score=29.52 Aligned_cols=14 Identities=43% Similarity=0.560 Sum_probs=7.3
Q ss_pred HHHHHCCCEEEEEe
Q psy11239 290 KKIKLLGGTVYLVQ 303 (410)
Q Consensus 290 ~~~~~~Ga~v~~v~ 303 (410)
..++.+|++++.++
T Consensus 88 ~~~~~~G~~~v~vd 101 (379)
T PRK11658 88 NMIVLLGATPVMVD 101 (379)
T ss_pred HHHHHcCCEEEEEe
Confidence 34445566655554
No 362
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=31.90 E-value=3.7e+02 Score=24.87 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=35.0
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+.+++..++|.-|.++|....+.|.+++++... .+..+.....++..|.++..+.
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~ 65 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRN--QEKAEAVVAEIKAAGGEALAVK 65 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEE
Confidence 445554777789999999988999987776642 2211223344555677766553
No 363
>PRK08589 short chain dehydrogenase; Validated
Probab=31.75 E-value=2.9e+02 Score=25.61 Aligned_cols=53 Identities=17% Similarity=0.013 Sum_probs=31.0
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
+.++++..+|--|.++|..-...|.+++++-.. .+ .......++..|.++..+
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~--~~-~~~~~~~~~~~~~~~~~~ 59 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA--EA-VSETVDKIKSNGGKAKAY 59 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc--HH-HHHHHHHHHhcCCeEEEE
Confidence 346665566778888888888888887766433 11 112233444556555443
No 364
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.71 E-value=2.1e+02 Score=24.57 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=34.6
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
|++...+|+.|..++-.....|.+.++++.... |... ..+.+++..+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~------~~~~--~~~~~~~~~d 47 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS------KAED--SPGVEIIQGD 47 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG------GHHH--CTTEEEEESC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch------hccc--ccccccceee
Confidence 456556799999999999999999999986542 3333 5566665544
No 365
>PRK06172 short chain dehydrogenase; Provisional
Probab=31.57 E-value=2.4e+02 Score=25.62 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=23.7
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+.+++...+|.-|.++|......|.+++++.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~ 38 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVAD 38 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 4566666678999999988888898766554
No 366
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=31.51 E-value=2.2e+02 Score=27.72 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=37.4
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHh-cCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKL-LGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~-~GA~v~~ 118 (410)
+++++.+|-.|.-+--.|+..|++++-+.-. ++|.+.++. +|-+..+
T Consensus 154 vvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg------~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 154 VVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG------AEKCDFLTEELGFDAGI 201 (340)
T ss_pred EEEEecccccchHHHHHHHhhCCeEEEecCC------HHHHHHHHHhcCCceee
Confidence 5565567999999899999999999887733 379999998 8877643
No 367
>PLN02827 Alcohol dehydrogenase-like
Probab=31.51 E-value=1.5e+02 Score=29.28 Aligned_cols=47 Identities=28% Similarity=0.347 Sum_probs=34.6
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++ .++|--|.+++..|+.+|.+.++++... +.|....+.+||+-++
T Consensus 197 VlV-~G~G~vG~~~iqlak~~G~~~vi~~~~~-----~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 197 VVI-FGLGTVGLSVAQGAKLRGASQIIGVDIN-----PEKAEKAKTFGVTDFI 243 (378)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCcEEE
Confidence 444 4679999999999999998755554322 3578888999997543
No 368
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=31.51 E-value=1.5e+02 Score=29.63 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=47.4
Q ss_pred HHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeC
Q psy11239 239 LLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 304 (410)
Q Consensus 239 ~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~ 304 (410)
..++-.|.+..++ .+||..+..+|+.|-..|=.-.|++|.-+.- .....+...||+.++|+-
T Consensus 42 ~~ae~~G~k~ava-~~sgT~AL~laL~al~ig~GDeVI~ps~Tfv---ATan~i~~~Ga~PVFvDi 103 (374)
T COG0399 42 AFAEYLGVKYAVA-VSSGTAALHLALLALAIGPGDEVIVPSFTFV---ATANAVLLVGAKPVFVDI 103 (374)
T ss_pred HHHHHhCCCeEEE-ecChHHHHHHHHHhcCCCCCCEEEecCCchH---HHHHHHHHcCCeEEEEec
Confidence 3566788888877 8999999999887655777778888865443 556677778999998873
No 369
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=31.48 E-value=1.6e+02 Score=28.40 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=34.9
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
+++. ++|..|.+++..|+.+|++.++.+... +.|...++.+|++-+
T Consensus 172 vlI~-g~g~vg~~~~~lak~~G~~~v~~~~~~-----~~~~~~~~~~ga~~v 217 (345)
T cd08287 172 VVVV-GDGAVGLCAVLAAKRLGAERIIAMSRH-----EDRQALAREFGATDI 217 (345)
T ss_pred EEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHcCCceE
Confidence 5554 689999999999999999865555433 256788899999543
No 370
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=31.48 E-value=51 Score=33.47 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=23.4
Q ss_pred eEEecCchHHHHHHHHHHHHcCCcEEEEEcCC
Q psy11239 249 IICETGAGMHGVSTATSCCLLNLESIIYIGEN 280 (410)
Q Consensus 249 ~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~ 280 (410)
+|| .++|-.|.+.|.+|++.|.+++++=+..
T Consensus 2 VVV-vGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVV-VGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEE-E--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEE-ECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 556 8999999999999999999999987543
No 371
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=31.47 E-value=1.9e+02 Score=27.85 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=33.4
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
+++. .+|..|.+++..|+.+|.+.+++.+. ..++..++.+|++-+
T Consensus 167 vlV~-g~g~iG~~~~~~a~~~G~~vi~~~~~------~~~~~~~~~~g~~~~ 211 (333)
T cd08296 167 VAVQ-GIGGLGHLAVQYAAKMGFRTVAISRG------SDKADLARKLGAHHY 211 (333)
T ss_pred EEEE-CCcHHHHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHcCCcEE
Confidence 5554 58999999999999999985544322 246778899998644
No 372
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=31.45 E-value=3.4e+02 Score=24.71 Aligned_cols=53 Identities=11% Similarity=0.077 Sum_probs=34.0
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.++++.++|--|.++|......|.+++++-.. .. .......++..|.++..+
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~--~~-~~~~~~~~~~~~~~~~~~ 61 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS--EL-VHEVAAELRAAGGEALAL 61 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc--hH-HHHHHHHHHhcCCeEEEE
Confidence 345555777789999999989999987766542 11 112334455567776544
No 373
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=31.43 E-value=1.5e+02 Score=28.77 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=32.9
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
+++. ++|..|.+++..|+.+|++.++++.. . ..|...++.+|++-+
T Consensus 181 vlI~-g~g~vG~~~~~lak~~G~~~v~~~~~-~----~~~~~~~~~~g~~~v 226 (361)
T cd08231 181 VVVQ-GAGPLGLYAVAAAKLAGARRVIVIDG-S----PERLELAREFGADAT 226 (361)
T ss_pred EEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC-C----HHHHHHHHHcCCCeE
Confidence 5564 67999999999999999933333322 1 257778889998643
No 374
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.36 E-value=2.4e+02 Score=25.31 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=34.5
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+.+++..++|..|.+++......|.+++++... .+........++..|.+++.+.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~--~~~~~~~~~~~~~~~~~~~~~~ 62 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLART--EENLKAVAEEVEAYGVKVVIAT 62 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHHhCCeEEEEE
Confidence 345554777889999998888899987776643 2211122334455677776553
No 375
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=31.31 E-value=1.9e+02 Score=28.73 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=38.9
Q ss_pred HHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeC
Q psy11239 57 LAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 121 (410)
Q Consensus 57 ~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~ 121 (410)
.++..+....+. .+||..|..+|..+-..+=.-.|++|..+- ......++.+|++++.++.
T Consensus 42 la~~~g~~~~v~-~~sgt~al~lal~al~~~~Gd~Viv~~~~~---~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 42 FCQLTGNQHAIA-VSSATAGMHITLMALGIGPGDEVITPSLTW---VSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred HHHHhCCCeEEE-ECCHHHHHHHHHHHcCCCCCCEEEECCCcH---HHHHHHHHHcCCEEEEEec
Confidence 455555555555 477888777776553222224567776544 3556788899999998863
No 376
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=31.29 E-value=1.5e+02 Score=31.02 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=36.3
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+++ .++|..|.+.+..|+.+|-. |++-+.. ++++++.+.+||+.+.++
T Consensus 168 VlV-iGaG~iGL~Ai~~Ak~lGA~--V~a~D~~----~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 168 VLV-IGAGVAGLAAIGAAGSLGAI--VRAFDTR----PEVAEQVESMGAEFLELD 215 (509)
T ss_pred EEE-ECCcHHHHHHHHHHHHCCCE--EEEEeCC----HHHHHHHHHcCCeEEEec
Confidence 555 58999999999999999984 3332222 478999999999966553
No 377
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=30.86 E-value=2.1e+02 Score=27.18 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=41.2
Q ss_pred ccccCCceEEEeeCCCCCCCchhhhHHHHHHHHHHH----hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEec
Q psy11239 25 SNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF----LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIG 95 (410)
Q Consensus 25 ~~~~~~~~i~~K~E~~nptGS~K~R~~~~~~~~~~~----~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p 95 (410)
++.+|-++-.+++++-.-.|-+=|-.-+...+.... ...+.+++- ++|-.|++++++...+|++.+.++.
T Consensus 83 A~~iGAVNTv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvl-GaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 83 ASLIGSVNTLLRTQNGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVI-GAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred HHHhCceeEEEEcCCCcEEEecCCHHHHHHHHHhhCCccccCCceEEEE-cCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 445565665555433223455555533433333211 122345554 8899999999999999997666653
No 378
>PRK08862 short chain dehydrogenase; Provisional
Probab=30.84 E-value=2.7e+02 Score=25.22 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=22.2
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEE
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIY 93 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv 93 (410)
+.+++...++.-|.++|...+..|.+++++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~ 35 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILC 35 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 345665566778888998888999886654
No 379
>PRK06181 short chain dehydrogenase; Provisional
Probab=30.74 E-value=3.6e+02 Score=24.58 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=32.9
Q ss_pred eEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 249 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 249 ~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+++..++|.-|.+++......|.+++++... ....+...+.++..|.++..+
T Consensus 4 vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~--~~~~~~~~~~l~~~~~~~~~~ 55 (263)
T PRK06181 4 VIITGASEGIGRALAVRLARAGAQLVLAARN--ETRLASLAQELADHGGEALVV 55 (263)
T ss_pred EEEecCCcHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEE
Confidence 4444777789999998888999987776643 221112233455567776554
No 380
>PRK13984 putative oxidoreductase; Provisional
Probab=30.69 E-value=6.8e+02 Score=26.58 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=25.3
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEecc
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGE 96 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 96 (410)
+++. ++|-.|.+.|...+++|++++|+=..
T Consensus 286 v~II-GaG~aGl~aA~~L~~~G~~v~vie~~ 315 (604)
T PRK13984 286 VAIV-GSGPAGLSAAYFLATMGYEVTVYESL 315 (604)
T ss_pred EEEE-CCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 5664 79999999999999999999887433
No 381
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=30.65 E-value=3.6e+02 Score=25.07 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHcCCCceEEecCchHHHHH--HHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC
Q psy11239 229 HKMNNSIAQSLLAKFLKKKRIICETGAGMHGVS--TATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN 306 (410)
Q Consensus 229 ~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a--~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~ 306 (410)
.|..-+.+..+.++-.|.+-+-.|++||..+-- .-..+++.=....+++..+--+ ..+...+...||+++.+ |+
T Consensus 137 ~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs--~e~A~~~~~aGAD~IVv--Gn 212 (230)
T PF01884_consen 137 DKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRS--PEQAREMAEAGADTIVV--GN 212 (230)
T ss_dssp SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--S--HHHHHHHHCTTSSEEEE--SC
T ss_pred CcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCC--HHHHHHHHHCCCCEEEE--CC
Confidence 344444444445556888888899988843222 2222333336777888655322 35677888899999998 66
No 382
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=30.55 E-value=1.7e+02 Score=30.92 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=38.6
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
.++++ ++.|+.|+.+|-.=+..|++++++= .+ +++.+..+.+|.+++.-+
T Consensus 418 ~hiiI-~G~G~~G~~la~~L~~~g~~vvvId-~d-----~~~~~~~~~~g~~~i~GD 467 (558)
T PRK10669 418 NHALL-VGYGRVGSLLGEKLLAAGIPLVVIE-TS-----RTRVDELRERGIRAVLGN 467 (558)
T ss_pred CCEEE-ECCChHHHHHHHHHHHCCCCEEEEE-CC-----HHHHHHHHHCCCeEEEcC
Confidence 44666 5999999999999999999986554 32 256778888898887665
No 383
>PLN02342 ornithine carbamoyltransferase
Probab=30.51 E-value=2.1e+02 Score=28.31 Aligned_cols=45 Identities=11% Similarity=-0.046 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCC-EEEE
Q psy11239 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGG-TVYL 301 (410)
Q Consensus 256 GN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga-~v~~ 301 (410)
-|.+.+++.+++++|++++++.|+.-.+. ...++.++..|. ++..
T Consensus 204 ~nva~Sli~~~~~~G~~v~~~~P~~~~~~-~~~~~~a~~~g~~~~~~ 249 (348)
T PLN02342 204 NNIVHSWLLLAAVLPFHFVCACPKGYEPD-AKTVEKARAAGISKIEI 249 (348)
T ss_pred chhHHHHHHHHHHcCCEEEEECCcccccC-HHHHHHHHHhCCCcEEE
Confidence 38999999999999999999999763221 223344455563 5544
No 384
>PRK05876 short chain dehydrogenase; Provisional
Probab=30.50 E-value=3.1e+02 Score=25.60 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=22.6
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEE
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIY 93 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv 93 (410)
+.++++.++|--|.++|..-+..|.+++++
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~ 36 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLG 36 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 346666667888889888888889886554
No 385
>PRK07478 short chain dehydrogenase; Provisional
Probab=30.40 E-value=3e+02 Score=24.97 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=23.0
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+.++++.++|.-|.++|..-...|.+++++.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~ 37 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGA 37 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 3466665668888888888888898866654
No 386
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.37 E-value=2.6e+02 Score=25.09 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=23.5
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+.+++..++|..|.++|..-...|.+++++.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~ 38 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLA 38 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4466666678899999888888898766654
No 387
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=30.32 E-value=1.2e+02 Score=26.79 Aligned_cols=47 Identities=6% Similarity=0.029 Sum_probs=29.3
Q ss_pred HHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcCCCeEEEEccCC
Q psy11239 351 YEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGG 398 (410)
Q Consensus 351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~~~~vigVe~~g 398 (410)
.|+.++.......-.++-+++|+|+...-+...+ ....+|++||...
T Consensus 21 ~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~-~~~~~v~~vDis~ 67 (188)
T TIGR00438 21 LQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQV-GGKGRVIAVDLQP 67 (188)
T ss_pred HHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHh-CCCceEEEEeccc
Confidence 3555555422233457788999998766554433 2356899998875
No 388
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=30.23 E-value=1.9e+02 Score=27.93 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=34.1
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
+++- .+|..|.+++..|+.+|++.++++... +.|...++.+|++.+
T Consensus 179 vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~ 224 (350)
T cd08240 179 VVII-GAGGLGLMALALLKALGPANIIVVDID-----EAKLEAAKAAGADVV 224 (350)
T ss_pred EEEE-CCcHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCcEE
Confidence 5554 679999999999999999655555322 257788889998644
No 389
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=30.16 E-value=2.7e+02 Score=25.03 Aligned_cols=55 Identities=16% Similarity=0.057 Sum_probs=34.3
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.+++..++|.-|.+++..-...|.+++++...... .......++..+.++..+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~--~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDD--AAATAELVEAAGGKARARQ 61 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 356676667999999999888889876665432111 1123344555666655444
No 390
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=30.15 E-value=2.5e+02 Score=27.55 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=34.0
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTV 116 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v 116 (410)
+++ .+.|..|.+++..|+.+|.+.++++... ..|....+.+|+..
T Consensus 180 vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~~~-----~~~~~~~~~~g~~~ 224 (375)
T cd08282 180 VAV-FGAGPVGLMAAYSAILRGASRVYVVDHV-----PERLDLAESIGAIP 224 (375)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHcCCeE
Confidence 555 4679999999999999998644444332 36788889999964
No 391
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=30.15 E-value=1.4e+02 Score=28.38 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=34.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
.+++...+|..|.+++..|+.+|.+.+++.. . +.|...++.+|++-+
T Consensus 149 ~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~--~----~~~~~~~~~~g~~~~ 195 (324)
T cd08288 149 PVLVTGAAGGVGSVAVALLARLGYEVVASTG--R----PEEADYLRSLGASEI 195 (324)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEeC--C----HHHHHHHHhcCCCEE
Confidence 3566444599999999999999998655542 2 357888899999544
No 392
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=30.12 E-value=2.1e+02 Score=27.26 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=33.6
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++...+|-.|.+++..|+.+|.+.+++.. .+ .+.+.++.+|++.++
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~---~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SD---EKVAYLKKLGFDVAF 188 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CH---HHHHHHHHcCCCEEE
Confidence 45555344688899999999999997655542 22 356677788986544
No 393
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=30.12 E-value=1.4e+02 Score=29.50 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHcCCcEEEEec-cCCccccchh-HH----HHHhcCCEEEEEeCCCHHHHH
Q psy11239 73 GMHGVSTATSCCLLNLESIIYIG-ENDYKRQNIN-VK----KIKLLGGTVYLVQYGNLKEAM 128 (410)
Q Consensus 73 GN~g~a~A~~a~~~G~~~~iv~p-~~~~~~~~~k-~~----~~~~~GA~v~~v~~g~~~~~~ 128 (410)
+|...+++.+++++|+.++++.| +.... +.. +. ..+..|.++..++ +..+++
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~--d~~ea~ 242 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYIL--DERYMDWAEQNAAESGGSLTVSH--DIDSAY 242 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCC--CHHHHHHHHHHHHHcCCeEEEEc--CHHHHh
Confidence 48999999999999999999999 64321 111 11 2456788887664 444443
No 394
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=30.08 E-value=53 Score=27.75 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.8
Q ss_pred EEecCchHHHHHHHHHHHHcCCcEEEEEcC
Q psy11239 250 ICETGAGMHGVSTATSCCLLNLESIIYIGE 279 (410)
Q Consensus 250 v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 279 (410)
++ .++|.-+.+++..++.+|++++++=|.
T Consensus 2 ~I-~GaG~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 2 VI-FGAGHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EE-ES-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred EE-EeCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 44 889999999999999999999999875
No 395
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=30.07 E-value=3.7e+02 Score=24.50 Aligned_cols=85 Identities=20% Similarity=0.186 Sum_probs=0.0
Q ss_pred hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhc
Q psy11239 61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNN 138 (410)
Q Consensus 61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~ 138 (410)
+..+.++++..+|.-|.++|..-...|.+++++...... ..-...+...|.++..+. .| ..+.+..+.+...+.
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNW---DETRRLIEKEGRKVTFVQ-VDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHH---HHHHHHHHhcCCceEEEE-cCCCCHHHHHHHHHHHHHH
Q ss_pred ccCCccccccc
Q psy11239 139 ILNSHYLIGTA 149 (410)
Q Consensus 139 ~~~~~~~~~~~ 149 (410)
...-..++...
T Consensus 89 ~g~id~li~~a 99 (258)
T PRK06935 89 FGKIDILVNNA 99 (258)
T ss_pred cCCCCEEEECC
No 396
>PRK07454 short chain dehydrogenase; Provisional
Probab=29.94 E-value=2.6e+02 Score=25.17 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=24.6
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+.+++..++|..|.++|-.....|.+++++.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~ 37 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVA 37 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3466666679999999999999999877765
No 397
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=29.93 E-value=5.8e+02 Score=25.58 Aligned_cols=73 Identities=10% Similarity=0.008 Sum_probs=41.0
Q ss_pred CCchhhHHHHHHHHHHHHHcCC-CceEEecCchHHHHHHHHHHH-HcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 225 FTGAHKMNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTATSCC-LLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 225 ptgS~K~R~a~~~~~~a~~~g~-~~~v~~~ssGN~g~a~A~~a~-~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.|....|.+...... ...+. +.+++ .++++.+..++..+- .-|= .|++++.... .-...++.+|++++.+
T Consensus 120 ~~g~~~lr~~ia~~~~-~~~~~~~~Iii-t~G~~~al~~~~~~l~~pgd--~Vlv~~P~y~---~~~~~~~~~g~~~~~v 192 (431)
T PRK15481 120 APVSPELHAWAARWLR-DDCPVAFEIDL-TSGAIDAIERLLCAHLLPGD--SVAVEDPCFL---SSINMLRYAGFSASPV 192 (431)
T ss_pred cCCCHHHHHHHHHHHh-hccCCcCeEEE-ecCcHHHHHHHHHHhCCCCC--EEEEeCCCcH---HHHHHHHHcCCeEEee
Confidence 3455667766554322 11222 35665 666677776665432 2232 3444443443 4456778899999988
Q ss_pred eC
Q psy11239 303 QY 304 (410)
Q Consensus 303 ~~ 304 (410)
+-
T Consensus 193 ~~ 194 (431)
T PRK15481 193 SV 194 (431)
T ss_pred cc
Confidence 64
No 398
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=29.93 E-value=78 Score=27.96 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=22.4
Q ss_pred eCccHHHHHHHHHHHHcCCcEEEEecc
Q psy11239 70 TGAGMHGVSTATSCCLLNLESIIYIGE 96 (410)
Q Consensus 70 ~ssGN~g~a~A~~a~~~G~~~~iv~p~ 96 (410)
-++|..|.++|+.++..|++++++=+.
T Consensus 5 iGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 5 IGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 388999999999999999999988754
No 399
>PRK09148 aminotransferase; Validated
Probab=29.89 E-value=4.9e+02 Score=25.93 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=41.2
Q ss_pred CCchhhHHHHHHHHHHHH---HcCCC-ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 225 FTGAHKMNNSIAQSLLAK---FLKKK-RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 225 ptgS~K~R~a~~~~~~a~---~~g~~-~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
+.|.-..|.++....... ....+ .+++ .++++.+..++..+- ..-.-.|++|..... .-....+.+|++++
T Consensus 67 ~~G~~~lr~aia~~~~~~~g~~~~~~~~I~i-t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~---~~~~~~~~~g~~v~ 141 (405)
T PRK09148 67 SKGIPGLRRAQAAYYARRFGVKLNPDTQVVA-TLGSKEGFANMAQAI-TAPGDVILCPNPSYP---IHAFGFIMAGGVIR 141 (405)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEE-cCChHHHHHHHHHHh-cCCCCEEEEcCCCCc---ccHHHHHhcCCEEE
Confidence 346667787766644311 12233 4655 666677766654433 222234556543443 23345567899998
Q ss_pred EEeC
Q psy11239 301 LVQY 304 (410)
Q Consensus 301 ~v~~ 304 (410)
.++.
T Consensus 142 ~v~~ 145 (405)
T PRK09148 142 SVPA 145 (405)
T ss_pred EEeC
Confidence 8863
No 400
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=29.84 E-value=1.9e+02 Score=28.02 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHH-HHHhcCCEEEEEeCCCHHHHH
Q psy11239 72 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVK-KIKLLGGTVYLVQYGNLKEAM 128 (410)
Q Consensus 72 sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~-~~~~~GA~v~~v~~g~~~~~~ 128 (410)
.+|..++++..++++|+.+.++-|+.-... ..-.+ ..+..|.++...+ +.++++
T Consensus 161 ~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~-~~~~~~~~~~~g~~~~~~~--d~~~a~ 215 (304)
T PRK00779 161 GNNVANSLLLAAALLGFDLRVATPKGYEPD-PEIVEKIAKETGASIEVTH--DPKEAV 215 (304)
T ss_pred CCccHHHHHHHHHHcCCEEEEECCcccCCC-HHHHHHHHHHcCCeEEEEc--CHHHHh
Confidence 479999999999999999999999854311 11111 2466788887664 444443
No 401
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=29.75 E-value=3.3e+02 Score=27.20 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=9.9
Q ss_pred CCCEEEEccCchhHH
Q psy11239 363 NKKYILACVGGGSNA 377 (410)
Q Consensus 363 ~~d~iv~~vGtGg~~ 377 (410)
.+|. |+++|+|+.+
T Consensus 88 ~~D~-IiaiGGGS~i 101 (383)
T PRK09860 88 NCDS-VISLGGGSPH 101 (383)
T ss_pred CCCE-EEEeCCchHH
Confidence 4666 5678888775
No 402
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=29.59 E-value=3.8e+02 Score=26.91 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=9.7
Q ss_pred CCCEEEEccCchhHH
Q psy11239 363 NKKYILACVGGGSNA 377 (410)
Q Consensus 363 ~~d~iv~~vGtGg~~ 377 (410)
.+| +|+++|+|+.+
T Consensus 106 ~~D-~IiavGGGS~i 119 (395)
T PRK15454 106 GCD-GVIAFGGGSVL 119 (395)
T ss_pred CcC-EEEEeCChHHH
Confidence 456 45788888875
No 403
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=29.51 E-value=2.3e+02 Score=27.67 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=32.3
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
+.+++ .++|-.|.+++..|+.+|.+.++++.. .+ .+++.++.+|++-+
T Consensus 178 ~~VlV-~G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~---~~~~~~~~~Ga~~~ 225 (358)
T TIGR03451 178 DSVAV-IGCGGVGDAAIAGAALAGASKIIAVDI--DD---RKLEWAREFGATHT 225 (358)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCeEEEEcC--CH---HHHHHHHHcCCceE
Confidence 45555 467888999888999999875555521 22 45566677888643
No 404
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=29.48 E-value=1.8e+02 Score=28.75 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=36.9
Q ss_pred cHHHHHHHHH-HHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHH
Q psy11239 73 GMHGVSTATS-CCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAM 128 (410)
Q Consensus 73 GN~g~a~A~~-a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~ 128 (410)
+|...+++.. ++.+|+.++++.|+..... ..-...++..|..+..++ +..+++
T Consensus 171 ~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~-~~~~~~~~~~g~~~~~~~--d~~ea~ 224 (338)
T PRK08192 171 GRTVHSLSRLLCMYKNVSFTLVSPKELAMP-DYVISDIENAGHKITITD--QLEGNL 224 (338)
T ss_pred CchHHHHHHHHHHhcCCEEEEECCccccCC-HHHHHHHHHcCCeEEEEc--CHHHHH
Confidence 6889999976 6677999999999865211 233455677888887764 444443
No 405
>PRK12937 short chain dehydrogenase; Provisional
Probab=29.43 E-value=3.5e+02 Score=24.21 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=34.8
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.+++..++|.-|.++|..-...|.+.+++.....+. ...-...++.++.++..+.
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 61 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAA-ADELVAEIEAAGGRAIAVQ 61 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHH-HHHHHHHHHhcCCeEEEEE
Confidence 3466665679999999999999999877665332111 1122334455676666554
No 406
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=29.39 E-value=3.8e+02 Score=26.41 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=15.6
Q ss_pred HHHHHhhhhcCCCCCEEEEccCchhHH
Q psy11239 351 YEIHQQLNFNFYNKKYILACVGGGSNA 377 (410)
Q Consensus 351 ~Ei~~q~~~~~~~~d~iv~~vGtGg~~ 377 (410)
.++++++.+ ..+|. |+++|+|..+
T Consensus 70 ~~~~~~~~~--~~~d~-IiaiGGGs~~ 93 (370)
T cd08551 70 DAAVAAYRE--EGCDG-VIAVGGGSVL 93 (370)
T ss_pred HHHHHHHHh--cCCCE-EEEeCCchHH
Confidence 466666652 34665 6788888774
No 407
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.38 E-value=3.6e+02 Score=24.28 Aligned_cols=87 Identities=17% Similarity=0.106 Sum_probs=0.0
Q ss_pred hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhc
Q psy11239 61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNN 138 (410)
Q Consensus 61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~ 138 (410)
...+.++++.++|--|.++|..-...|.++++..-.... ........++..|.++..+. .| ..+.+..+.+.+.+.
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~~~~~~~ 81 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAE-EMNETLKMVKENGGEGIGVL-ADVSTREGCETLAKATIDR 81 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChH-HHHHHHHHHHHcCCeeEEEE-eccCCHHHHHHHHHHHHHH
Q ss_pred ccCCccccccc
Q psy11239 139 ILNSHYLIGTA 149 (410)
Q Consensus 139 ~~~~~~~~~~~ 149 (410)
.....+++...
T Consensus 82 ~~~~d~vi~~a 92 (252)
T PRK06077 82 YGVADILVNNA 92 (252)
T ss_pred cCCCCEEEECC
No 408
>PRK07454 short chain dehydrogenase; Provisional
Probab=29.37 E-value=3.6e+02 Score=24.17 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=33.3
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
.+++..++|..|.+++......|.+++++... .+........++..+.++..+
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~ 60 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARS--QDALEALAAELRSTGVKAAAY 60 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhCCCcEEEE
Confidence 44554777889999999999999987777642 221112223344556666544
No 409
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=29.33 E-value=2.1e+02 Score=27.95 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=33.8
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|..|.+++..|+.+|...++++.. + + .+++.++.+|++.+.
T Consensus 189 ~~VlV-~G~g~vG~~a~q~ak~~G~~~vi~~~~-~-~---~~~~~~~~~Ga~~~i 237 (369)
T cd08301 189 STVAI-FGLGAVGLAVAEGARIRGASRIIGVDL-N-P---SKFEQAKKFGVTEFV 237 (369)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCeEEEEcC-C-H---HHHHHHHHcCCceEE
Confidence 45555 567899999999999999854444421 2 2 456677889987544
No 410
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=29.32 E-value=46 Score=25.13 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=23.4
Q ss_pred hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEecc
Q psy11239 61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGE 96 (410)
Q Consensus 61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 96 (410)
.+..++|++ .+|-+.. .|..|+.+|+|+++=++.
T Consensus 29 ~~~~Giv~~-~Gg~~SH-~aIlAr~~giP~ivg~~~ 62 (80)
T PF00391_consen 29 QRVAGIVTE-EGGPTSH-AAILARELGIPAIVGVGD 62 (80)
T ss_dssp TTSSEEEES-SSSTTSH-HHHHHHHTT-EEEESTTT
T ss_pred hheEEEEEE-cCCccch-HHHHHHHcCCCEEEeecc
Confidence 345567775 5555543 489999999999987753
No 411
>PRK06181 short chain dehydrogenase; Provisional
Probab=29.25 E-value=3e+02 Score=25.11 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=23.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
.+++...+|.-|.++|......|++++++.
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~ 32 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAA 32 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 356655678899999988889998766665
No 412
>PRK09126 hypothetical protein; Provisional
Probab=29.20 E-value=71 Score=31.61 Aligned_cols=29 Identities=31% Similarity=0.300 Sum_probs=25.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
.+++. ++|-.|.++|.+.++.|++++|+=
T Consensus 5 dviIv-GgG~aGl~~A~~L~~~G~~v~v~E 33 (392)
T PRK09126 5 DIVVV-GAGPAGLSFARSLAGSGLKVTLIE 33 (392)
T ss_pred cEEEE-CcCHHHHHHHHHHHhCCCcEEEEe
Confidence 46665 999999999999999999998774
No 413
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=29.20 E-value=2.3e+02 Score=27.03 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=34.0
Q ss_pred eEEEeCccHHHHHHHHHHHHc-CCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLL-NLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~-G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
+++-..+|..|.+++..|+.+ |++.+++... +.|...++.+|++-+..
T Consensus 152 vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~------~~~~~~l~~~g~~~~~~ 200 (336)
T TIGR02817 152 LLIIGGAGGVGSILIQLARQLTGLTVIATASR------PESQEWVLELGAHHVID 200 (336)
T ss_pred EEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc------HHHHHHHHHcCCCEEEE
Confidence 555434689999999999988 9886655432 24677888899965543
No 414
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=29.14 E-value=1.3e+02 Score=27.35 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=35.8
Q ss_pred hhhHHHHHHHhhhhcCCCCCEEEEccCchhHHHHHHHHHhcCCCeEEEEccCCC
Q psy11239 346 QSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINSNFKLVAIESGGI 399 (410)
Q Consensus 346 ~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~~~~vigVe~~g~ 399 (410)
+...+.++-+++.. ...+|++-|++|.+-.+.++..+..-+++|+-|..-
T Consensus 32 ~~~~a~~lg~~la~----~g~~V~tGG~~GiMea~~~gA~~~gg~~vGi~p~~~ 81 (205)
T COG1611 32 YYELARELGRELAK----RGLLVITGGGPGVMEAVARGALEAGGLVVGILPGLL 81 (205)
T ss_pred HHHHHHHHHHHHHh----CCcEEEeCCchhhhhHHHHHHHHcCCeEEEecCCCc
Confidence 44455666666652 226777777777777778888888999999988643
No 415
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=29.10 E-value=3.4e+02 Score=24.43 Aligned_cols=56 Identities=21% Similarity=0.178 Sum_probs=34.8
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+.+++..++|--|.++|......|.++++.... ..+..+.....++..|.++..+.
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 62 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNS-SKEAAENLVNELGKEGHDVYAVQ 62 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCC-cHHHHHHHHHHHHhcCCeEEEEE
Confidence 345554777788999998888889887654422 22211222345566788876664
No 416
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=29.06 E-value=6.3e+02 Score=25.70 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHccCCCce
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN-LKEAMNEAIKDWSNNILNSH 326 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~-~~~~~~~a~~~~~~~~~~~~ 326 (410)
.+++ .++|-.|.+.|+.+++.|++++++-...... ....-.+..+|.. +.+. ..+..+...++.+....
T Consensus 4 DviI-IG~G~aGl~aA~~la~~g~~v~vi~~~~~~~--~~~~g~~~~l~~~----~~g~~~~~~~~~~~~l~~~~~~--- 73 (422)
T PRK05329 4 DVLV-IGGGLAGLTAALAAAEAGKRVALVAKGQGAL--HFSSGSIDLLGYL----PDGQPVSDPFEALAALAEQAPE--- 73 (422)
T ss_pred CEEE-ECccHHHHHHHHHHHHCCCcEEEEECCCCcc--hhchhhhhhcccC----CCCCCchhHHHHHHHHHHhccc---
Q ss_pred EEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCC-------EEEEccCc
Q psy11239 327 YLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK-------YILACVGG 373 (410)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d-------~iv~~vGt 373 (410)
|||.......-........+-+.+.|...- .++.|.||
T Consensus 74 ---------hpy~~ig~~~v~e~~~~~~~~~~~~g~~~~g~~~~n~~~~T~~Gt 118 (422)
T PRK05329 74 ---------HPYSLVGADAVREALAQFQALLEAAGLPLVGSVERNHLRPTPLGT 118 (422)
T ss_pred ---------CChhhhhHHHHHHHHHHHHHHHHHcCCCccCCCCCceeeeccccc
No 417
>PLN02527 aspartate carbamoyltransferase
Probab=29.06 E-value=3.3e+02 Score=26.40 Aligned_cols=44 Identities=9% Similarity=-0.188 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHc-CCcEEEEEcCCC-ccchhhhHHHHHHCCCEEEEE
Q psy11239 257 MHGVSTATSCCLL-NLESIIYIGEND-YKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 257 N~g~a~A~~a~~~-G~~~~vv~p~~~-~~~~~~~~~~~~~~Ga~v~~v 302 (410)
|.+.+++.+++++ |+.++++.|+.- ++ ......++..|.++..+
T Consensus 164 rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~--~~~~~~~~~~g~~~~~~ 209 (306)
T PLN02527 164 RTVRSLAYLLAKYEDVKIYFVAPDVVKMK--DDIKDYLTSKGVEWEES 209 (306)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCccCCC--HHHHHHHHHcCCEEEEE
Confidence 6899999998887 999999999763 22 12233444456665543
No 418
>PRK06194 hypothetical protein; Provisional
Probab=29.05 E-value=3.7e+02 Score=24.92 Aligned_cols=55 Identities=16% Similarity=0.150 Sum_probs=32.9
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.++++.++|.-|.++|-.-...|.+++++-.. .+........+...|.++..+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~ 61 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQ--QDALDRAVAELRAQGAEVLGVR 61 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC--hHHHHHHHHHHHhcCCeEEEEE
Confidence 346666566888888988888889887655322 1111122333444576765554
No 419
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=29.03 E-value=3.2e+02 Score=26.12 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=34.6
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|..|.+++..|+.+|.+.++.+.. .+ .+.+.++.+|++-+.
T Consensus 170 ~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~--~~---~~~~~~~~~ga~~v~ 218 (345)
T cd08287 170 STVVV-VGDGAVGLCAVLAAKRLGAERIIAMSR--HE---DRQALAREFGATDIV 218 (345)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC--CH---HHHHHHHHcCCceEe
Confidence 46666 568899999999999999986666632 22 345677778885433
No 420
>PRK07890 short chain dehydrogenase; Provisional
Probab=28.96 E-value=3e+02 Score=25.01 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=24.9
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+.++++.++|.-|+++|......|.+++++-
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~ 36 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAA 36 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 4567766779999999999999999776664
No 421
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=28.95 E-value=1.9e+02 Score=23.24 Aligned_cols=42 Identities=19% Similarity=0.076 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccC
Q psy11239 54 QSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGEN 97 (410)
Q Consensus 54 ~~~~~~~~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~ 97 (410)
.+..+...+.+.+|+.+.||++++.+|-+= -..|.++|.|..
T Consensus 8 a~~~A~~~~ak~Ivv~T~sG~ta~~isk~R--P~~pIiavt~~~ 49 (117)
T PF02887_consen 8 AVELAEDLNAKAIVVFTESGRTARLISKYR--PKVPIIAVTPNE 49 (117)
T ss_dssp HHHHHHHHTESEEEEE-SSSHHHHHHHHT---TSSEEEEEESSH
T ss_pred HHHHHHhcCCCEEEEECCCchHHHHHHhhC--CCCeEEEEcCcH
Confidence 344667777777777767788887766542 346666666543
No 422
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=28.89 E-value=1.6e+02 Score=29.00 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=38.0
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHH-CCCEEEEE
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKL-LGGTVYLV 302 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~-~Ga~v~~v 302 (410)
++++ .+.|.-|...+..++.+|...++++.. .+ .++++.+. +|++++.-
T Consensus 171 ~V~V-~GaGpIGLla~~~a~~~Ga~~Viv~d~--~~---~Rl~~A~~~~g~~~~~~ 220 (350)
T COG1063 171 TVVV-VGAGPIGLLAIALAKLLGASVVIVVDR--SP---ERLELAKEAGGADVVVN 220 (350)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCceEEEeCC--CH---HHHHHHHHhCCCeEeec
Confidence 4555 999999999999999999999999832 22 55667766 77776654
No 423
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=28.88 E-value=1.3e+02 Score=31.59 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHHcC-CcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCCHHHHHH
Q psy11239 73 GMHGVSTATSCCLLN-LESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMN 129 (410)
Q Consensus 73 GN~g~a~A~~a~~~G-~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~~~~~~~ 129 (410)
+|.+.|++..++.+| +.++++.|+.... ...-...++..|+.+..++ +..++++
T Consensus 186 ~rva~Sl~~~l~~~g~~~v~l~~P~~~~~-p~~~~~~a~~~G~~v~i~~--d~~eav~ 240 (525)
T PRK13376 186 GRTVHSKVNGLKIFKNVKVDLIAPEELAM-PEHYVEKMKKNGFEVRIFS--SIEEYLS 240 (525)
T ss_pred CcHHHHHHHHHHhcCCcEEEEECCccccC-CHHHHHHHHHcCCeEEEEc--CHHHHhc
Confidence 799999999999999 9999999986521 0223455667899887775 4555544
No 424
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=28.82 E-value=2.9e+02 Score=26.51 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=32.5
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGT 115 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~ 115 (410)
+++- .+|..|.+++..|+.+|++.+++.... .+...++.+|++
T Consensus 169 vlV~-g~g~vg~~~~~~a~~~G~~vi~~~~~~------~~~~~~~~~g~~ 211 (345)
T cd08260 169 VAVH-GCGGVGLSAVMIASALGARVIAVDIDD------DKLELARELGAV 211 (345)
T ss_pred EEEE-CCCHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHHhCCC
Confidence 5554 479999999999999999876554332 467777889984
No 425
>KOG1197|consensus
Probab=28.80 E-value=2.9e+02 Score=26.42 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=45.0
Q ss_pred hcCCc-eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCE-EEEEeCCCHHHHHHHHHHH
Q psy11239 61 LKKKR-IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGT-VYLVQYGNLKEAMNEAIKD 134 (410)
Q Consensus 61 ~~~~~-~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~-v~~v~~g~~~~~~~~~~~~ 134 (410)
.+++. +++-+.+|--|..+.-.|+..|-..+..... .+|.++.+.+||+ +|... ..+-+++..++
T Consensus 144 vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asT------aeK~~~akenG~~h~I~y~---~eD~v~~V~ki 210 (336)
T KOG1197|consen 144 VKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAST------AEKHEIAKENGAEHPIDYS---TEDYVDEVKKI 210 (336)
T ss_pred CCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEecc------HHHHHHHHhcCCcceeecc---chhHHHHHHhc
Confidence 34455 5555567999999999999999887766633 3799999999998 44443 23344444444
No 426
>PRK08226 short chain dehydrogenase; Provisional
Probab=28.66 E-value=3.2e+02 Score=24.92 Aligned_cols=31 Identities=13% Similarity=-0.023 Sum_probs=24.4
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+.+++..++|.-|.++|......|.+++++-
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~ 37 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLD 37 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEec
Confidence 4566666779999999999999999876653
No 427
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=28.60 E-value=63 Score=32.34 Aligned_cols=29 Identities=14% Similarity=0.352 Sum_probs=23.5
Q ss_pred eEEecCchHHHHHHHHHHHHcCCcEEEEEc
Q psy11239 249 IICETGAGMHGVSTATSCCLLNLESIIYIG 278 (410)
Q Consensus 249 ~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p 278 (410)
+|| .++|..|.+.|..|+..|.+++|+=.
T Consensus 2 VvV-IG~G~AGl~AA~~Aae~G~~V~lvek 30 (417)
T PF00890_consen 2 VVV-IGGGLAGLAAAIEAAEAGAKVLLVEK 30 (417)
T ss_dssp EEE-E-SSHHHHHHHHHHHHTTT-EEEEES
T ss_pred EEE-ECCCHHHHHHHHHHhhhcCeEEEEEe
Confidence 455 89999999999999999998888763
No 428
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=28.59 E-value=3e+02 Score=26.34 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=32.8
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
+.+++ .++|..|.+++..|+.+|.+.+++.+ + + .++..++.+|++-+
T Consensus 165 ~~vlV-~g~g~iG~~~~~~a~~~G~~vi~~~~--~-~---~~~~~~~~~g~~~~ 211 (333)
T cd08296 165 DLVAV-QGIGGLGHLAVQYAAKMGFRTVAISR--G-S---DKADLARKLGAHHY 211 (333)
T ss_pred CEEEE-ECCcHHHHHHHHHHHHCCCeEEEEeC--C-h---HHHHHHHHcCCcEE
Confidence 45666 45899999999999999998555442 2 2 34556677888643
No 429
>PLN00175 aminotransferase family protein; Provisional
Probab=28.58 E-value=6e+02 Score=25.42 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=40.9
Q ss_pred CchhhHHHHHHHHHHHHH---cCCC-ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 226 TGAHKMNNSIAQSLLAKF---LKKK-RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 226 tgS~K~R~a~~~~~~a~~---~g~~-~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
.|.-..|.++........ ...+ .+++ .+++..+..++..+- +.-.-.|++++.... .-...++.+|++++.
T Consensus 91 ~G~~~Lr~aia~~~~~~~g~~~~~~~~I~v-t~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~---~~~~~~~~~g~~~~~ 165 (413)
T PLN00175 91 FGVPELNSAIAERFKKDTGLVVDPEKEVTV-TSGCTEAIAATILGL-INPGDEVILFAPFYD---SYEATLSMAGAKIKT 165 (413)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCEEE-eCCHHHHHHHHHHHh-CCCCCEEEEeCCCch---hHHHHHHHcCCEEEE
Confidence 366667777665443221 1223 4555 666677776655533 333344555543333 344567789999988
Q ss_pred Ee
Q psy11239 302 VQ 303 (410)
Q Consensus 302 v~ 303 (410)
++
T Consensus 166 v~ 167 (413)
T PLN00175 166 VT 167 (413)
T ss_pred EE
Confidence 86
No 430
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=28.58 E-value=4.3e+02 Score=23.69 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=34.7
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
.+++..++|.-|.++|......|.+.+++... ...+....+..++..|.+++..
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 58 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP-NSPRRVKWLEDQKALGFDFIAS 58 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCC-ChHHHHHHHHHHHhcCCcEEEE
Confidence 44554778889999999999999887665422 2222223345556678877654
No 431
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.56 E-value=77 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.4
Q ss_pred cCchHHHHHHHHHHHHcCCcEEEEEc
Q psy11239 253 TGAGMHGVSTATSCCLLNLESIIYIG 278 (410)
Q Consensus 253 ~ssGN~g~a~A~~a~~~G~~~~vv~p 278 (410)
.++|-.|.+.|+..++.|++++|+=.
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEES
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEec
Confidence 46888999999999999998888753
No 432
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=28.53 E-value=3.1e+02 Score=24.80 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=33.8
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.+++...+|..|.++|-.-...|.+++++....... ......++..+.++..+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAA--AAAAEALQKAGGKAIGVA 59 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHH--HHHHHHHHhcCCcEEEEE
Confidence 3566766679999999998888899877765432211 122234445566654443
No 433
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=28.48 E-value=1.8e+02 Score=29.76 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=35.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCcc--ccchhHHHHHhcCCEEE
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYK--RQNINVKKIKLLGGTVY 117 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~--~~~~k~~~~~~~GA~v~ 117 (410)
.+++. ++||.|.-+|..+..+|.+++++......+ .....++.++..|.+++
T Consensus 274 ~VvVI-GgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~ 327 (449)
T TIGR01316 274 SVVVI-GGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFH 327 (449)
T ss_pred eEEEE-CCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEE
Confidence 46664 899999999999999999988887553211 01122345666777765
No 434
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=28.37 E-value=1.3e+02 Score=29.16 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCC--CceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 232 NNSIAQSLLAKFLKK--KRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 232 R~a~~~~~~a~~~g~--~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
+.+...+..|...++ +-+|+|+--++.|+.+|-.=+..|+++++++
T Consensus 130 ~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~ 177 (301)
T COG1184 130 KTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIV 177 (301)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEe
Confidence 455566667777665 5667888888899999999999999999887
No 435
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.32 E-value=4e+02 Score=23.19 Aligned_cols=37 Identities=19% Similarity=0.001 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 234 SIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 234 a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
+...+..+.+.|.+.+|- |.. ..-.|+++|++++.+.
T Consensus 114 ~~~~i~~~~~~G~~viVG----g~~---~~~~A~~~gl~~v~i~ 150 (176)
T PF06506_consen 114 IEAAIKQAKAEGVDVIVG----GGV---VCRLARKLGLPGVLIE 150 (176)
T ss_dssp HHHHHHHHHHTT--EEEE----SHH---HHHHHHHTTSEEEESS
T ss_pred HHHHHHHHHHcCCcEEEC----CHH---HHHHHHHcCCcEEEEE
Confidence 444566777788765442 222 2445789999987665
No 436
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=28.31 E-value=71 Score=32.43 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=23.7
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCC
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGEND 98 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~ 98 (410)
+||. ++|-.|.+.|.+|++.|.++.++=+...
T Consensus 2 VVVv-GgG~aG~~AAi~AAr~G~~VlLiE~~~~ 33 (428)
T PF12831_consen 2 VVVV-GGGPAGVAAAIAAARAGAKVLLIEKGGF 33 (428)
T ss_dssp EEEE---SHHHHHHHHHHHHTTS-EEEE-SSSS
T ss_pred EEEE-CccHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 5664 9999999999999999999998876543
No 437
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=28.29 E-value=1.4e+02 Score=29.54 Aligned_cols=47 Identities=9% Similarity=0.100 Sum_probs=34.4
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
+++...+|..|.+++..|+.+|.+.+++.+ + +.|...++.+|++.++
T Consensus 197 vlV~ga~g~iG~a~~~lak~~G~~vv~~~~--s----~~~~~~~~~~G~~~~i 243 (393)
T cd08246 197 VLIWGASGGLGSMAIQLARAAGANPVAVVS--S----EEKAEYCRALGAEGVI 243 (393)
T ss_pred EEEECCCcHHHHHHHHHHHHcCCeEEEEeC--C----HHHHHHHHHcCCCEEE
Confidence 555433599999999999999999665432 2 3578888899986543
No 438
>PRK07035 short chain dehydrogenase; Provisional
Probab=28.29 E-value=3.8e+02 Score=24.25 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=23.6
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+.++++..+|.-|.+++......|.+++++-
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 4567766678889999988888898766554
No 439
>PRK07825 short chain dehydrogenase; Provisional
Probab=28.26 E-value=4.7e+02 Score=24.01 Aligned_cols=31 Identities=26% Similarity=0.159 Sum_probs=23.2
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+.++++..+|.-|.++|......|.+++++.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~ 36 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGD 36 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEE
Confidence 3466666678899999988888898866553
No 440
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=28.17 E-value=3.5e+02 Score=24.09 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=33.1
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+.+++..++|..|.+++-.-...|.+.+++.....+. .......++..+.++..++
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 61 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAG-AEALVAEIGALGGKALAVQ 61 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHHHHhcCCceEEEE
Confidence 3466666779999999988888899876555322110 0111223444556655554
No 441
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=28.17 E-value=4.4e+02 Score=25.63 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeC
Q psy11239 229 HKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY 304 (410)
Q Consensus 229 ~K~R~a~~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~ 304 (410)
.-.|.++.... ....+.+++ .++...+..++..+-.-| . .|++|..... .-...++.+|++++.++-
T Consensus 60 ~~Lr~aia~~~---~v~~~~I~i-t~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~---~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 60 RELRLALAQHH---QLPPEWILP-GNGAAELLTWAGRELAQL-R-AVYLITPAFG---DYRRALRAFGATVKELPL 126 (360)
T ss_pred HHHHHHHHHHh---CcChhhEEE-CCCHHHHHHHHHHHhCCC-C-eEEEECCCcH---HHHHHHHHcCCeEEEEec
Confidence 34555544433 223356666 666677777665442223 3 4555544444 445677889999988863
No 442
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=28.17 E-value=77 Score=30.28 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=25.0
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCC
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGEND 98 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~ 98 (410)
|+|. ++|=.|.++|.+.++.|++++|+=....
T Consensus 4 V~Iv-GaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 4 VAIV-GAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEE---SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred EEEE-CCCHHHHHHHHHHHhcccccccchhccc
Confidence 5664 8999999999999999999888864433
No 443
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=28.13 E-value=3.7e+02 Score=23.90 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=35.3
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+.+++..++|..|.+++....+.|.+.+++... ..+........++..+.++..++
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 61 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYAS-SEAGAEALVAEIGALGGKALAVQ 61 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC-chhHHHHHHHHHHhcCCceEEEE
Confidence 345555778889999998888889987666642 22111122334455677777664
No 444
>PRK07478 short chain dehydrogenase; Provisional
Probab=28.12 E-value=2.7e+02 Score=25.32 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=33.8
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
.+++..++|--|.++|..-.+.|.+++++... .+........++..|.++..+.
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~ 61 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARR--QAELDQLVAEIRAEGGEAVALA 61 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEE
Confidence 45554667778888888888899987776532 2211222345566677766553
No 445
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=28.12 E-value=1.3e+02 Score=27.84 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=26.9
Q ss_pred CCEEEEccCchhHHHHHHHHHhcCCCeEEEEccCCC
Q psy11239 364 KKYILACVGGGSNALGIFYTFINSNFKLVAIESGGI 399 (410)
Q Consensus 364 ~d~iv~~vGtGg~~~Gi~~~~~~~~~~vigVe~~g~ 399 (410)
-..+-+++|+|....-+...+..++.+++|||++..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ 93 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPA 93 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHH
Confidence 346778999998777666555556889999999753
No 446
>PRK13243 glyoxylate reductase; Reviewed
Probab=28.10 E-value=3.6e+02 Score=26.42 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=61.1
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHccCCCce
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSH 326 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~~~~~~~~a~~~~~~~~~~~~ 326 (410)
+++.+ .+.|+-|+++|..++.+|+++.++-|. .. .. ....+|++. .++++.+. +. .+
T Consensus 151 ktvgI-iG~G~IG~~vA~~l~~~G~~V~~~d~~--~~---~~--~~~~~~~~~-----~~l~ell~-------~a---Di 207 (333)
T PRK13243 151 KTIGI-IGFGRIGQAVARRAKGFGMRILYYSRT--RK---PE--AEKELGAEY-----RPLEELLR-------ES---DF 207 (333)
T ss_pred CEEEE-ECcCHHHHHHHHHHHHCCCEEEEECCC--CC---hh--hHHHcCCEe-----cCHHHHHh-------hC---CE
Confidence 34444 889999999999999999987766542 11 11 223345432 12333322 11 23
Q ss_pred EEecCCCCCCCChhHHHhhhhhHHHHHHHhhhhcCCCCCEEEEccCchhHH--HHHHHHHhcC
Q psy11239 327 YLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNA--LGIFYTFINS 387 (410)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~~~~~~~d~iv~~vGtGg~~--~Gi~~~~~~~ 387 (410)
.++. -|.. ..-...+..|.++++ +++.+++=++.|+.. ..+..+++.-
T Consensus 208 V~l~-----lP~t---~~T~~~i~~~~~~~m-----k~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 208 VSLH-----VPLT---KETYHMINEERLKLM-----KPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred EEEe-----CCCC---hHHhhccCHHHHhcC-----CCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 2321 1221 111222456777877 588999999999986 5566666543
No 447
>PRK06836 aspartate aminotransferase; Provisional
Probab=28.07 E-value=6e+02 Score=25.12 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=39.6
Q ss_pred CchhhHHHHHHHHHHHH---HcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 226 TGAHKMNNSIAQSLLAK---FLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 226 tgS~K~R~a~~~~~~a~---~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
.|.-..|.++....... ....+.+++ .++++.+..++..+- ..-.-.|++++.... .-...++.+|++++.+
T Consensus 73 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~-t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~---~~~~~~~~~g~~v~~v 147 (394)
T PRK06836 73 AGYPEVREAIAESLNRRFGTPLTADHIVM-TCGAAGALNVALKAI-LNPGDEVIVFAPYFV---EYRFYVDNHGGKLVVV 147 (394)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcCcEEE-eCChHHHHHHHHHHh-cCCCCEEEEcCCCCc---cHHHHHHHcCCEEEEE
Confidence 45555666655543322 123355665 556677766554332 222344556543333 2344667899999888
Q ss_pred eC
Q psy11239 303 QY 304 (410)
Q Consensus 303 ~~ 304 (410)
+-
T Consensus 148 ~~ 149 (394)
T PRK06836 148 PT 149 (394)
T ss_pred ec
Confidence 63
No 448
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=27.96 E-value=3.3e+02 Score=24.36 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhh
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSN 137 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~ 137 (410)
+.+++...+|.-|.+++......|.+++++.... ++........++.+|.++..+. .| -.+.++.+.+...+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~D~~d~~~i~~~~~~~~~ 75 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQN-LHAAQEVVNLITQAGGKAFVLQ-ADISDENQVVAMFTAIDQ 75 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCC-hHHHHHHHHHHHhCCCeEEEEE-ccCCCHHHHHHHHHHHHH
No 449
>PRK06483 dihydromonapterin reductase; Provisional
Probab=27.93 E-value=4.4e+02 Score=23.54 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=32.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
.++++.++|--|.++|..-+..|.+++++-.... .....++..|++.+.++
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~D 54 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY-----PAIDGLRQAGAQCIQAD 54 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch-----hHHHHHHHcCCEEEEcC
Confidence 4666666788899999888888988776543221 12344555676655554
No 450
>PLN02342 ornithine carbamoyltransferase
Probab=27.81 E-value=2.3e+02 Score=28.12 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=38.5
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCC-EEEEEeCCCHHHHH
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGG-TVYLVQYGNLKEAM 128 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA-~v~~v~~g~~~~~~ 128 (410)
+.+..-..|...+++.+++++|+.++++.|+.-.. ...-.+..+.+|. ++..++ +.++++
T Consensus 197 va~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~-~~~~~~~a~~~g~~~~~~~~--d~~eav 257 (348)
T PLN02342 197 VVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEP-DAKTVEKARAAGISKIEITN--DPAEAV 257 (348)
T ss_pred EEEECCCchhHHHHHHHHHHcCCEEEEECCccccc-CHHHHHHHHHhCCCcEEEEc--CHHHHh
Confidence 44432337899999999999999999999986431 1223344556674 665553 444443
No 451
>PRK05876 short chain dehydrogenase; Provisional
Probab=27.71 E-value=4.4e+02 Score=24.57 Aligned_cols=54 Identities=19% Similarity=0.093 Sum_probs=33.2
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.++++.++|--|.++|..-.+.|.+++++.. +.+........++..|.++..+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r--~~~~l~~~~~~l~~~~~~~~~~ 60 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDV--DKPGLRQAVNHLRAEGFDVHGV 60 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHHHhcCCeEEEE
Confidence 34555466777899999888889998666542 2221112234455667776554
No 452
>PLN02527 aspartate carbamoyltransferase
Probab=27.62 E-value=1.6e+02 Score=28.54 Aligned_cols=47 Identities=9% Similarity=-0.154 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHc-CCcEEEEeccCCccccchhHHHHHhcCCEEEEEe
Q psy11239 73 GMHGVSTATSCCLL-NLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 73 GN~g~a~A~~a~~~-G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~ 120 (410)
+|...+++.+++++ |+.++++.|+..... +.-...++..|.++..++
T Consensus 163 ~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~-~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 163 GRTVRSLAYLLAKYEDVKIYFVAPDVVKMK-DDIKDYLTSKGVEWEESS 210 (306)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCccCCC-HHHHHHHHHcCCEEEEEc
Confidence 36899999998887 999999999864211 223344555677776654
No 453
>PRK06172 short chain dehydrogenase; Provisional
Probab=27.59 E-value=2.8e+02 Score=25.13 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=34.7
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.+++...+|.-|.++|......|.+++++... .+..+.....++..+.++..+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~ 61 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRD--AAGGEETVALIREAGGEALFV 61 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCCceEEE
Confidence 455555777889999999888899987776532 221122334556667776554
No 454
>PRK06847 hypothetical protein; Provisional
Probab=27.54 E-value=72 Score=31.28 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.9
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
..+++ .++|-.|.++|...++.|++++|+=
T Consensus 5 ~~V~I-VGaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 5 KKVLI-VGGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred ceEEE-ECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 34666 8999999999999999999988874
No 455
>KOG0024|consensus
Probab=27.45 E-value=1.7e+02 Score=28.72 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=39.5
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
++++ .+.|--|...-..|+.+|-+=++++. -.+ .++++.+.+||+++.-
T Consensus 172 ~vLV-~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~---~Rle~Ak~~Ga~~~~~ 220 (354)
T KOG0024|consen 172 KVLV-LGAGPIGLLTGLVAKAMGASDVVITD--LVA---NRLELAKKFGATVTDP 220 (354)
T ss_pred eEEE-ECCcHHHHHHHHHHHHcCCCcEEEee--cCH---HHHHHHHHhCCeEEee
Confidence 4555 99999999999999999999888883 222 6788888999998753
No 456
>PRK08017 oxidoreductase; Provisional
Probab=27.41 E-value=4.5e+02 Score=23.73 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=35.3
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEeCCC
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN 306 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~~g~ 306 (410)
.+++...+|--|.++|....+.|.+++++.. +. .+++.++..|++.+.++-.+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r--~~----~~~~~~~~~~~~~~~~D~~~ 56 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACR--KP----DDVARMNSLGFTGILLDLDD 56 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC--CH----HHhHHHHhCCCeEEEeecCC
Confidence 3555466788999999888888998766553 22 23445556788877765443
No 457
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=27.34 E-value=1.6e+02 Score=27.87 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=33.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEE
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 117 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~ 117 (410)
.+++...+|..|.+++..|+.+|++.++.... +.|...++.+|++-+
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~v 195 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLGYEVVASTGK------ADAADYLKKLGAKEV 195 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCeEEEEecC------HHHHHHHHHcCCCEE
Confidence 45554345999999999999999985444322 256778888998544
No 458
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=27.32 E-value=90 Score=30.94 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=25.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
.++|. ++|-.|.++|++-++.|++++|+=
T Consensus 5 dv~Iv-GgG~aGl~~A~~L~~~G~~v~l~E 33 (384)
T PRK08849 5 DIAVV-GGGMVGAATALGFAKQGRSVAVIE 33 (384)
T ss_pred cEEEE-CcCHHHHHHHHHHHhCCCcEEEEc
Confidence 46775 999999999999999999999886
No 459
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=27.18 E-value=4.2e+02 Score=24.86 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.3
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEc
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIG 278 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p 278 (410)
..+++-..+|..|.+++..|+.+|.+.+++..
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~ 172 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARGINVINLVR 172 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCCCeEEEEec
Confidence 35555345688999999999999998766653
No 460
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=27.15 E-value=3.8e+02 Score=24.45 Aligned_cols=55 Identities=22% Similarity=0.197 Sum_probs=34.9
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.+++..++|--|.++|....+.|.+++++... ..+........++..|.++..+
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~-~~~~~~~~~~~l~~~~~~~~~~ 62 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS-DEEEANDVAEEIKKAGGEAIAV 62 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHHcCCeEEEE
Confidence 345554777788999999999999987776542 2221122344555668776554
No 461
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=27.09 E-value=2e+02 Score=30.26 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=37.2
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+++++ ++.|+.|+.+|-.-+..|++++++=. +. .+.+.++..|.+++.-
T Consensus 418 ~hiiI-~G~G~~G~~la~~L~~~g~~vvvId~--d~----~~~~~~~~~g~~~i~G 466 (558)
T PRK10669 418 NHALL-VGYGRVGSLLGEKLLAAGIPLVVIET--SR----TRVDELRERGIRAVLG 466 (558)
T ss_pred CCEEE-ECCChHHHHHHHHHHHCCCCEEEEEC--CH----HHHHHHHHCCCeEEEc
Confidence 56666 99999999999999999999877642 22 3456667778777764
No 462
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.03 E-value=3e+02 Score=24.73 Aligned_cols=54 Identities=17% Similarity=0.022 Sum_probs=34.1
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
.+++..++|--|.++|......|.+++++... .++.......++..|+++..+.
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~--~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQKGAKLALIDLN--QEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCceEEEE
Confidence 44454667889999999888899987665532 2211233445566688765553
No 463
>PRK07035 short chain dehydrogenase; Provisional
Probab=26.99 E-value=4.7e+02 Score=23.59 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=33.4
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.+++..++|.-|.+++....+.|.+++++-.. .+..+.....+...|.++..+
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~--~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK--LDGCQAVADAIVAAGGKAEAL 62 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEE
Confidence 345555777788999999988999987776542 221122233444556665544
No 464
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=26.97 E-value=3.5e+02 Score=24.06 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=35.2
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
.+++...+|..|..++......|.+++++... ..........++..|.++..+.
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSN--EEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC--hhHHHHHHHHHHhcCCceEEEE
Confidence 45555778899999999888899997666542 2211222344556787776653
No 465
>PRK10537 voltage-gated potassium channel; Provisional
Probab=26.95 E-value=3.8e+02 Score=27.02 Aligned_cols=116 Identities=10% Similarity=0.002 Sum_probs=0.0
Q ss_pred cccccccchhHHHHHHHhhhhcCCCccEEEEecCCCCceeeccccccccccccccccCceeEEeecCCCCCchhhHHHHH
Q psy11239 156 PTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235 (410)
Q Consensus 156 ~~~~~~g~~ti~~EI~~q~~~~~~~~d~iv~~vG~Gg~~~G~~tpl~~~~~L~~~~~~~~v~~K~e~~~ptgS~K~R~a~ 235 (410)
++.++.|++.+|.++.+++...+. +.+++- ............-++.-+..++.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~--~vvVId----------------~d~~~~~~~~g~~vI~GD~td~e--------- 293 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQ--AVTVIV----------------PLGLEHRLPDDADLIPGDSSDSA--------- 293 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCC--CEEEEE----------------CchhhhhccCCCcEEEeCCCCHH---------
Q ss_pred HHHHHHHHcCCCceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 236 ~~~~~a~~~g~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
.+..+.-...+.+++....=..-..++..++.++-++.++....+.+ +.+.++..|++.+..|
T Consensus 294 -~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~----~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 294 -VLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVNDSK----NLEKIKRVHPDMIFSP 356 (393)
T ss_pred -HHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEECCHH----HHHHHHhcCCCEEECH
No 466
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=26.94 E-value=3.1e+02 Score=24.74 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=34.7
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.+++...+|..|.++|..-...|.+++++... .+........++..+.++..+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~ 58 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLN--DEAAAAAAEALQKAGGKAIGV 58 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHHHHhcCCcEEEE
Confidence 345555778889999998888889988777643 221122234455567776554
No 467
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=26.94 E-value=1.5e+02 Score=29.25 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHcCCcEEEEeccCCccccchhH----HHHHhcCCEEEEEeCCCHHHH
Q psy11239 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINV----KKIKLLGGTVYLVQYGNLKEA 127 (410)
Q Consensus 73 GN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~----~~~~~~GA~v~~v~~g~~~~~ 127 (410)
-|.+.++..+++++|+.++++-|+..... ..-. ...+..|+++...+ +.+++
T Consensus 167 ~~v~~S~~~~~~~~G~~v~~~~P~~~~~~-~~~~~~~~~~~~~~g~~~~~~~--d~~~a 222 (334)
T PRK12562 167 NNMGNSMLEAAALTGLDLRLVAPQACWPE-ASLVAECSALAQKHGGKITLTE--DIAAG 222 (334)
T ss_pred CCHHHHHHHHHHHcCCEEEEECCcccCCc-HHHHHHHHHHHHHcCCeEEEEc--CHHHH
Confidence 38999999999999999999999864310 1112 12345688876654 44444
No 468
>PRK08226 short chain dehydrogenase; Provisional
Probab=26.91 E-value=4.2e+02 Score=24.10 Aligned_cols=53 Identities=11% Similarity=-0.073 Sum_probs=33.0
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.+++..++|.-|.++|......|.+++++-... . .......++..|.++..+
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~--~-~~~~~~~~~~~~~~~~~~ 59 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISP--E-IEKLADELCGRGHRCTAV 59 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH--H-HHHHHHHHHHhCCceEEE
Confidence 4455557778899999999888999876665321 1 112233444456666544
No 469
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.89 E-value=1.6e+02 Score=27.56 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=28.3
Q ss_pred ceEEEeCccH-H--HHHHHHHHHHcCCcEEEEeccCCcccc-chhHHHHHhcCCEE
Q psy11239 65 RIICETGAGM-H--GVSTATSCCLLNLESIIYIGENDYKRQ-NINVKKIKLLGGTV 116 (410)
Q Consensus 65 ~~v~~~ssGN-~--g~a~A~~a~~~G~~~~iv~p~~~~~~~-~~k~~~~~~~GA~v 116 (410)
.+++-++.|| - |.++|..-+..|+++.||+++..+... ......++.+|..+
T Consensus 62 ~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 62 RVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQSSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCCCChHHHHHHHHHHHHcCCCE
Confidence 4555556655 3 345555556679999999965322110 12234455556443
No 470
>PRK09126 hypothetical protein; Provisional
Probab=26.87 E-value=71 Score=31.58 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=24.9
Q ss_pred eEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 249 IICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 249 ~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
+++ .++|-.|.++|.+.++.|++++|+=
T Consensus 6 viI-vGgG~aGl~~A~~L~~~G~~v~v~E 33 (392)
T PRK09126 6 IVV-VGAGPAGLSFARSLAGSGLKVTLIE 33 (392)
T ss_pred EEE-ECcCHHHHHHHHHHHhCCCcEEEEe
Confidence 555 8999999999999999999998874
No 471
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=26.87 E-value=85 Score=31.64 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=23.3
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
||+. ++|-.|...|+++++.|.++.++.
T Consensus 2 ViVV-GgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 2 VIVV-GGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEE-SSSHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEE-CCCHHHHHHHHHHHHCCCCEEEEe
Confidence 5664 999999999999999999999994
No 472
>PRK06194 hypothetical protein; Provisional
Probab=26.86 E-value=5.1e+02 Score=23.95 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=34.0
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
+.++++.++|.-|.++|......|.+++++-. ..+........+...|.+++.+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r--~~~~~~~~~~~~~~~~~~~~~~~ 61 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADV--QQDALDRAVAELRAQGAEVLGVR 61 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeC--ChHHHHHHHHHHHhcCCeEEEEE
Confidence 34555477778899999888888998766643 22211223344445577776553
No 473
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=26.84 E-value=3.2e+02 Score=25.52 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=37.7
Q ss_pred ceEEecCCCCCCCChhHHHhhhhhHHHHHHHhhh-hcCCCCCEEEEccCchhHHHHHHHHHhcC-CCeEEE-EccC
Q psy11239 325 SHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLN-FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVA-IESG 397 (410)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~t~g~Ei~~q~~-~~~~~~d~iv~~vGtGg~~~Gi~~~~~~~-~~~vig-Ve~~ 397 (410)
.+|+-.+. + .||..-..+-......++++++. . ..+|.+|+||-|....+ ...+++. ++.|++ ++|.
T Consensus 26 ~iy~~D~~-~-~PYG~ks~~~i~~~~~~~~~~L~~~--~g~d~ivIaCNTA~a~~--~~~l~~~~~iPii~iie~~ 95 (251)
T TIGR00067 26 YIYVGDTK-R-FPYGEKSPEFILEYVLELLTFLKER--HNIKLLVVACNTASALA--LEDLQRNFDFPVVGVIEPA 95 (251)
T ss_pred EEEEecCC-C-CCCCCCCHHHHHHHHHHHHHHHHHh--CCCCEEEEeCchHHHHH--HHHHHHHCCCCEEeecHHH
Confidence 45543333 3 67733222222234456667665 3 35899999999975432 3444433 778888 5544
No 474
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=26.74 E-value=3.3e+02 Score=26.30 Aligned_cols=80 Identities=18% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCC---CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHH---HHHCCCEEEEEeCCC
Q psy11239 233 NSIAQSLLAKFLKK---KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKK---IKLLGGTVYLVQYGN 306 (410)
Q Consensus 233 ~a~~~~~~a~~~g~---~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~---~~~~Ga~v~~v~~g~ 306 (410)
.+.-.+...+..|. .++....-..|..++++.+++++|++++++.|+............ .+..|+++... .+
T Consensus 132 aL~Dl~Ti~e~~g~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~--~d 209 (304)
T TIGR00658 132 ALADLLTIIEHFGKLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELT--HD 209 (304)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEE--cC
Q ss_pred HHHHHHHH
Q psy11239 307 LKEAMNEA 314 (410)
Q Consensus 307 ~~~~~~~a 314 (410)
.+++++.+
T Consensus 210 ~~~a~~~a 217 (304)
T TIGR00658 210 PVEAVKGA 217 (304)
T ss_pred HHHHhCCC
No 475
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=26.70 E-value=2.8e+02 Score=27.21 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=31.9
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~ 300 (410)
+.+++ .++|.-|.+++..|+.+|.+.+++... .+ .+....+.+|++.+
T Consensus 185 ~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~---~~~~~~~~~Ga~~v 232 (360)
T PLN02586 185 KHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSS--SN---KEDEAINRLGADSF 232 (360)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCC--cc---hhhhHHHhCCCcEE
Confidence 45666 777999999999999999986554422 22 22334556787643
No 476
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=26.69 E-value=2.1e+02 Score=27.56 Aligned_cols=48 Identities=15% Similarity=0.269 Sum_probs=35.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEE
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~ 118 (410)
.+++. .+|..|.++...|+.+|++.++++ .. + +.|....+.+|++.+.
T Consensus 166 ~vlV~-~~g~vg~~~~~la~~~G~~~v~~~-~~-~---~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 166 DVLIT-GAGPIGIMAAAVAKHVGARHVVIT-DV-N---EYRLELARKMGATRAV 213 (341)
T ss_pred eEEEE-CCCHHHHHHHHHHHHcCCCEEEEE-cC-C---HHHHHHHHHhCCcEEe
Confidence 35564 679999999999999999644455 22 2 3578888999997543
No 477
>PRK06949 short chain dehydrogenase; Provisional
Probab=26.56 E-value=3.6e+02 Score=24.38 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=25.0
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEec
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIG 95 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p 95 (410)
+.+++..++|.-|.++|......|.+++++..
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r 41 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASR 41 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 45677666799999999999999998666643
No 478
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=26.55 E-value=75 Score=32.04 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=23.5
Q ss_pred eEEecCchHHHHHHHHHHHHcCCcEEEEE
Q psy11239 249 IICETGAGMHGVSTATSCCLLNLESIIYI 277 (410)
Q Consensus 249 ~v~~~ssGN~g~a~A~~a~~~G~~~~vv~ 277 (410)
++| .++|-.|...|++++++|.++.++.
T Consensus 2 ViV-VGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 2 VIV-VGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEE-ESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred EEE-ECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 455 8999999999999999999999995
No 479
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=26.52 E-value=3.3e+02 Score=23.66 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=35.9
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccC-Ccc-ccchhHHHHHhcCCEEEEEe
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGEN-DYK-RQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~-~~~-~~~~k~~~~~~~GA~v~~v~ 120 (410)
.++..+.|..|..+|..=...+-+-+|++... .+. .....++.++..|++|....
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~ 59 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQ 59 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeec
Confidence 45555568899999988888886666665444 221 11246788889999998775
No 480
>PRK12939 short chain dehydrogenase; Provisional
Probab=26.50 E-value=3.1e+02 Score=24.59 Aligned_cols=54 Identities=15% Similarity=0.069 Sum_probs=33.6
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+.+++..++|.-|.++|....+.|.+.+++.. +.+..+.....++..++++..+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r--~~~~~~~~~~~~~~~~~~~~~~ 61 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDG--LAAEARELAAALEAAGGRAHAI 61 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHHHHhcCCcEEEE
Confidence 34555477889999999998899998766642 2221122233445567666554
No 481
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=26.49 E-value=3.9e+02 Score=25.88 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=46.8
Q ss_pred hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCcc-ccchhHHHHHhcCCEEEEEe
Q psy11239 61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYK-RQNINVKKIKLLGGTVYLVQ 120 (410)
Q Consensus 61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~-~~~~k~~~~~~~GA~v~~v~ 120 (410)
...+++|.+.|.+.+-.++=..|+..|.++.|++-++-|. +.....+.++.+|-++..+.
T Consensus 117 i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~ 177 (301)
T COG1184 117 IHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIV 177 (301)
T ss_pred ccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEe
Confidence 3345678777888888899899999999999999887775 33356678888998877765
No 482
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=26.48 E-value=1.7e+02 Score=29.17 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=36.2
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCc-----cc--hhhhHHHHHHCCCEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDY-----KR--QNINVKKIKLLGGTVY 300 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~-----~~--~~~~~~~~~~~Ga~v~ 300 (410)
+++++ .++|..|.-+|...+.+|.+++++.+.... +. .......++..|.+++
T Consensus 145 ~~vvV-iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~ 204 (396)
T PRK09754 145 RSVVI-VGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRIL 204 (396)
T ss_pred CeEEE-ECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 45666 889999999999999999999998864321 10 1122334556676665
No 483
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=26.45 E-value=84 Score=27.60 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=26.7
Q ss_pred CCceEEecCchHHHHHHHHHHHHcCCcEEEEEcC
Q psy11239 246 KKRIICETGAGMHGVSTATSCCLLNLESIIYIGE 279 (410)
Q Consensus 246 ~~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~ 279 (410)
.+.+++ .++||.|.-+|......|-+++++++.
T Consensus 167 ~k~V~V-VG~G~SA~d~a~~l~~~g~~V~~~~R~ 199 (203)
T PF13738_consen 167 GKRVVV-VGGGNSAVDIAYALAKAGKSVTLVTRS 199 (203)
T ss_dssp TSEEEE-E--SHHHHHHHHHHTTTCSEEEEEESS
T ss_pred CCcEEE-EcChHHHHHHHHHHHhhCCEEEEEecC
Confidence 366766 999999999999999999999999864
No 484
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=26.37 E-value=4.3e+02 Score=23.61 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=34.9
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
+++++..++|.-|.+++..-...|.+++++... .+........++..+.++..+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~--~~~~~~~~~~l~~~~~~~~~~ 60 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDIC--GDDAAATAELVEAAGGKARAR 60 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEE
Confidence 345555778899999999888889987776642 221123334455667666555
No 485
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=26.34 E-value=4.3e+02 Score=23.91 Aligned_cols=86 Identities=24% Similarity=0.162 Sum_probs=0.0
Q ss_pred hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhc
Q psy11239 61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNN 138 (410)
Q Consensus 61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~ 138 (410)
+..+.+++..++|.-|.++|..-...|.+++++--..... ..-...++..+.++..+. .| -.+.++.+.+.+.+.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~--~~~~~~l~~~~~~~~~~~-~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERA--ELAVAKLRQEGIKAHAAP-FNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHH--HHHHHHHHhcCCeEEEEe-cCCCCHHHHHHHHHHHHHh
Q ss_pred ccCCccccccc
Q psy11239 139 ILNSHYLIGTA 149 (410)
Q Consensus 139 ~~~~~~~~~~~ 149 (410)
......++...
T Consensus 84 ~~~id~vi~~a 94 (254)
T PRK08085 84 IGPIDVLINNA 94 (254)
T ss_pred cCCCCEEEECC
No 486
>PRK08589 short chain dehydrogenase; Validated
Probab=26.34 E-value=4.3e+02 Score=24.42 Aligned_cols=52 Identities=15% Similarity=0.016 Sum_probs=32.8
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEE
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
.++++.+++--|.++|..-...|.+++++-.. +........++..|.++..+
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~~vi~~~r~---~~~~~~~~~~~~~~~~~~~~ 59 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGAYVLAVDIA---EAVSETVDKIKSNGGKAKAY 59 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCc---HHHHHHHHHHHhcCCeEEEE
Confidence 44454666678888888888889988877643 21123344555667665544
No 487
>PRK05866 short chain dehydrogenase; Provisional
Probab=26.33 E-value=3.7e+02 Score=25.38 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=0.0
Q ss_pred hcCCceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhc
Q psy11239 61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNN 138 (410)
Q Consensus 61 ~~~~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~ 138 (410)
...+.+++...+|.-|.++|...+..|.+++++....... ..-...++..|.++..+. .| -.+.+..+.+...+.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l--~~~~~~l~~~~~~~~~~~-~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLL--DAVADRITRAGGDAMAVP-CDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH--HHHHHHHHhcCCcEEEEE-ccCCCHHHHHHHHHHHHHH
Q ss_pred ccCCccccccc
Q psy11239 139 ILNSHYLIGTA 149 (410)
Q Consensus 139 ~~~~~~~~~~~ 149 (410)
...-..++..+
T Consensus 115 ~g~id~li~~A 125 (293)
T PRK05866 115 IGGVDILINNA 125 (293)
T ss_pred cCCCCEEEECC
No 488
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=26.32 E-value=85 Score=32.74 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=25.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEe
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYI 94 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~ 94 (410)
+++|- ++|-+|.++|+.++..|++++++=
T Consensus 8 DVvII-GGGi~G~~~A~~la~rGl~V~LvE 36 (508)
T PRK12266 8 DLLVI-GGGINGAGIARDAAGRGLSVLLCE 36 (508)
T ss_pred CEEEE-CcCHHHHHHHHHHHHCCCeEEEEe
Confidence 46665 999999999999999999987664
No 489
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=26.32 E-value=1.6e+02 Score=28.87 Aligned_cols=52 Identities=6% Similarity=0.106 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHcCCcEEEEeccCCccccchhH----HHHHhcCCEEEEEeCCCHHHH
Q psy11239 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINV----KKIKLLGGTVYLVQYGNLKEA 127 (410)
Q Consensus 73 GN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~----~~~~~~GA~v~~v~~g~~~~~ 127 (410)
.|.++|++.+++.+|+.++++.|+..... ..-+ ...+..|+++..++ +..++
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~-~~~~~~~~~~~~~~g~~~~~~~--d~~ea 221 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNPD-DELLNKCKEIAAETGGKITITD--DIDEG 221 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccCC-HHHHHHHHHHHHHcCCeEEEEc--CHHHH
Confidence 58999999999999999999999854310 1111 22346788877664 44444
No 490
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=26.24 E-value=86 Score=22.12 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHHHcCCcEEEEec
Q psy11239 72 AGMHGVSTATSCCLLNLESIIYIG 95 (410)
Q Consensus 72 sGN~g~a~A~~a~~~G~~~~iv~p 95 (410)
....+..++.+++..||||.++.-
T Consensus 9 C~~~a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 9 CGEFAALFVALLRSLGIPARVVSG 32 (68)
T ss_pred eHHHHHHHHHHHHHCCCCeEEEee
Confidence 467888899999999999999863
No 491
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=26.24 E-value=7.2e+02 Score=25.44 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=26.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHcCCcEEEEecc
Q psy11239 65 RIICETGAGMHGVSTATSCCLLNLESIIYIGE 96 (410)
Q Consensus 65 ~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~ 96 (410)
.+++. ++|-.|.+.|...+..|++++||=..
T Consensus 145 ~VvII-GaGpAGl~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 145 KVAVV-GSGPAGLAAADQLARAGHKVTVFERA 175 (471)
T ss_pred EEEEE-CcCHHHHHHHHHHHhCCCcEEEEecC
Confidence 36664 89999999999999999998887544
No 492
>PRK07832 short chain dehydrogenase; Provisional
Probab=26.23 E-value=2.6e+02 Score=25.93 Aligned_cols=84 Identities=20% Similarity=0.084 Sum_probs=0.0
Q ss_pred CceEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEEeCCC--HHHHHHHHHHHHhhcccC
Q psy11239 64 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILN 141 (410)
Q Consensus 64 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v~~g~--~~~~~~~~~~~~~~~~~~ 141 (410)
+.+++..++|--|.++|...+..|.+++++-...... ......++..|++++..-..| -.+.+..+.+...+....
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGL--AQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Q ss_pred Cccccccc
Q psy11239 142 SHYLIGTA 149 (410)
Q Consensus 142 ~~~~~~~~ 149 (410)
-..++...
T Consensus 79 id~lv~~a 86 (272)
T PRK07832 79 MDVVMNIA 86 (272)
T ss_pred CCEEEECC
No 493
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=26.22 E-value=1.8e+02 Score=27.63 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=34.7
Q ss_pred eEEEeCccHHHHHHHHHHHHcCCcEEEEeccCCccccchhHHHHHhcCCEEEEE
Q psy11239 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119 (410)
Q Consensus 66 ~v~~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~~~~k~~~~~~~GA~v~~v 119 (410)
+++-..+|..|.+++..|+.+|.+.+++... +.+...++.+|++.+..
T Consensus 144 vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 144 VLIHAGASGVGTAAAQLAEKYGAATIITTSS------EEKVDFCKKLAAIILIR 191 (334)
T ss_pred EEEEcCCchHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCcEEEe
Confidence 5554346999999999999999987654322 25677778899964443
No 494
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=26.17 E-value=86 Score=27.70 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.0
Q ss_pred cCchHHHHHHHHHHHHcCCcEEEEEcC
Q psy11239 253 TGAGMHGVSTATSCCLLNLESIIYIGE 279 (410)
Q Consensus 253 ~ssGN~g~a~A~~a~~~G~~~~vv~p~ 279 (410)
.++|..|+++|..+...|++++++-+.
T Consensus 5 iGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 5 IGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 688999999999999999999999763
No 495
>PRK12744 short chain dehydrogenase; Provisional
Probab=26.16 E-value=5e+02 Score=23.59 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=32.9
Q ss_pred ceEEecCchHHHHHHHHHHHHcCCcEEEEEcCC--CccchhhhHHHHHHCCCEEEEE
Q psy11239 248 RIICETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLV 302 (410)
Q Consensus 248 ~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~--~~~~~~~~~~~~~~~Ga~v~~v 302 (410)
.+++..++|.-|.++|..-...|.+++++.... ..+..+...+.++..+.++..+
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 66 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAF 66 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEE
Confidence 444546677788899888888899966665321 1111112233455567776554
No 496
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=26.11 E-value=3.2e+02 Score=25.57 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=11.1
Q ss_pred HHHHhhhhcCCCCCEEEEccCch
Q psy11239 352 EIHQQLNFNFYNKKYILACVGGG 374 (410)
Q Consensus 352 Ei~~q~~~~~~~~d~iv~~vGtG 374 (410)
+|++++.+ ..||.++++.|+-
T Consensus 148 ~i~~~I~~--s~~dil~VglG~P 168 (243)
T PRK03692 148 ALFERIHA--SGAKIVTVAMGSP 168 (243)
T ss_pred HHHHHHHh--cCCCEEEEECCCc
Confidence 34455542 3466666666654
No 497
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=26.06 E-value=2.6e+02 Score=27.47 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=33.4
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|.-|.+++..|+.+|.+.++.+. ..+ .+++.++.+|++.+.
T Consensus 187 ~~VlV-~G~G~iG~~a~q~Ak~~G~~~Vi~~~--~~~---~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 187 DTVAV-FGLGGIGLSVIQGARMAKASRIIAID--INP---AKFELAKKLGATDCV 235 (368)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCeEEEEc--CCH---HHHHHHHHhCCCeEE
Confidence 45555 46789999999999999995444442 122 456677788986543
No 498
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=26.05 E-value=1.8e+02 Score=30.52 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=37.6
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEEEe
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 303 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~v~ 303 (410)
.++++ .+.|..|++.+..++.+|..++++-. .. .+++..+.+|++.+.++
T Consensus 165 akVlV-iGaG~iGl~Aa~~ak~lGA~V~v~d~--~~----~rle~a~~lGa~~v~v~ 214 (511)
T TIGR00561 165 AKVLV-IGAGVAGLAAIGAANSLGAIVRAFDT--RP----EVKEQVQSMGAEFLELD 214 (511)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeC--CH----HHHHHHHHcCCeEEecc
Confidence 35555 88999999999999999987444432 22 45778888999987664
No 499
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=26.04 E-value=2.5e+02 Score=27.57 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=33.2
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|..|.+++..|+.+|.+.++++.. .+ .+++.++.+|++.++
T Consensus 188 ~~VlV-~G~G~vG~~a~~~ak~~G~~~vi~~~~--~~---~~~~~~~~lGa~~~i 236 (368)
T cd08300 188 STVAV-FGLGAVGLAVIQGAKAAGASRIIGIDI--NP---DKFELAKKFGATDCV 236 (368)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCeEEEEeC--CH---HHHHHHHHcCCCEEE
Confidence 45666 467899999999999999954444421 22 355677778886443
No 500
>PLN02740 Alcohol dehydrogenase-like
Probab=26.00 E-value=2.5e+02 Score=27.78 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=33.4
Q ss_pred CceEEecCchHHHHHHHHHHHHcCCcEEEEEcCCCccchhhhHHHHHHCCCEEEE
Q psy11239 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 301 (410)
Q Consensus 247 ~~~v~~~ssGN~g~a~A~~a~~~G~~~~vv~p~~~~~~~~~~~~~~~~~Ga~v~~ 301 (410)
+.+++ .++|.-|.+++..|+.+|.+-++.+. ..+ .+++.++.+|++.+.
T Consensus 200 ~~VlV-~G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~---~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 200 SSVAI-FGLGAVGLAVAEGARARGASKIIGVD--INP---EKFEKGKEMGITDFI 248 (381)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHCCCCcEEEEc--CCh---HHHHHHHHcCCcEEE
Confidence 45555 56799999999999999985444442 122 456677888987543
Done!