RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11239
(410 letters)
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.
Length = 397
Score = 323 bits (831), Expect = e-108
Identities = 115/228 (50%), Positives = 160/228 (70%), Gaps = 17/228 (7%)
Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
++ K Y+ GRPTP+Y+ + +S L G+KI+LKREDLN TGAHK+NN +
Sbjct: 47 LDYLLKNYV-----------GRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVL 95
Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
Q+LLAK + KKRII ETGAG HGV+TAT+ LL LE +IY+G D +RQ +NV ++KLL
Sbjct: 96 GQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLL 155
Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
G V V G+ LK+A+NEA++DW N+ ++HYLIG+ +GPHPYPT+VRDFQS+IG E
Sbjct: 156 GAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEA 215
Query: 354 HQQLNFNFYNK--KYILACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
Q+ + ++ACVGGGSNA+GIF+ FI+ + +L+ +E+ G
Sbjct: 216 KAQIL-EKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGVEAAG 262
Score = 303 bits (779), Expect = e-100
Identities = 106/188 (56%), Positives = 141/188 (75%), Gaps = 5/188 (2%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPTP+Y+ + +S L G+KI+LKREDLN TGAHK+NN + Q+LLAK + KKRII ETGA
Sbjct: 56 GRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGA 115
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV+TAT+ LL LE +IY+G D +RQ +NV ++KLLG V V G+ LK+A+NE
Sbjct: 116 GQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNE 175
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK--KYILACV 188
A++DW N+ ++HYLIG+ +GPHPYPT+VRDFQS+IG E Q+ + ++ACV
Sbjct: 176 ALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQIL-EKEGRLPDAVVACV 234
Query: 189 GGGSNALG 196
GGGSNA+G
Sbjct: 235 GGGSNAIG 242
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport
and metabolism].
Length = 396
Score = 307 bits (788), Expect = e-102
Identities = 113/228 (49%), Positives = 159/228 (69%), Gaps = 18/228 (7%)
Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
++ K Y GRPTP+Y+ + ++ L G+KI+LKREDLN TGAHK+NN++
Sbjct: 45 LDYLLKDYA-----------GRPTPLYFAERLTEHL-GAKIYLKREDLNHTGAHKINNAL 92
Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
Q+LLAK + K RII ETGAG HGV+TAT+ L LE +IY+G D +RQ +NV +++LL
Sbjct: 93 GQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLL 152
Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
G V V G+ LK+A+NEA++DW N+ ++HYLIG+A+GPHPYPTIVRDFQS+IG E
Sbjct: 153 GAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEA 212
Query: 354 HQQLNFNFYNKK--YILACVGGGSNALGIFYTFINS-NFKLVAIESGG 398
Q+ + ++ACVGGGSNA+GIF+ FI+ + +L+ +E+ G
Sbjct: 213 KAQI-LEKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGVEAAG 259
Score = 285 bits (732), Expect = 2e-93
Identities = 104/188 (55%), Positives = 141/188 (75%), Gaps = 6/188 (3%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPTP+Y+ + ++ L G+KI+LKREDLN TGAHK+NN++ Q+LLAK + K RII ETGA
Sbjct: 54 GRPTPLYFAERLTEHL-GAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGA 112
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV+TAT+ L LE +IY+G D +RQ +NV +++LLG V V G+ LK+A+NE
Sbjct: 113 GQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINE 172
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACV 188
A++DW N+ ++HYLIG+A+GPHPYPTIVRDFQS+IG E Q+ + ++ACV
Sbjct: 173 ALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQI-LEKEGRLPDAVVACV 231
Query: 189 GGGSNALG 196
GGGSNA+G
Sbjct: 232 GGGSNAIG 239
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions.
Length = 365
Score = 298 bits (765), Expect = 9e-99
Identities = 114/214 (53%), Positives = 155/214 (72%), Gaps = 4/214 (1%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
+ +GRPTP+Y K +S L G+KI+LKREDLN TGAHK+NN++ Q+LLAK + KKR+I E
Sbjct: 29 DYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRVIAE 88
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV+TAT+C L LE IY+G D +RQ +NV +++LLG V V G+ LK+A
Sbjct: 89 TGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDA 148
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILA 369
++EAI+DW N+ ++HYL+G+ GPHPYP +VRDFQS+IG E +Q L ++A
Sbjct: 149 ISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIA 208
Query: 370 CVGGGSNALGIFYTFINS-NFKLVAIESGGISKK 402
CVGGGSNA G+FY FIN + KL+ +E+GG +
Sbjct: 209 CVGGGSNAAGLFYPFINDKDVKLIGVEAGGCGLE 242
Score = 275 bits (707), Expect = 5e-90
Identities = 104/187 (55%), Positives = 137/187 (73%), Gaps = 3/187 (1%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPTP+Y K +S L G+KI+LKREDLN TGAHK+NN++ Q+LLAK + KKR+I ETGA
Sbjct: 32 GRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRVIAETGA 91
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV+TAT+C L LE IY+G D +RQ +NV +++LLG V V G+ LK+A++E
Sbjct: 92 GQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISE 151
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 189
AI+DW N+ ++HYL+G+ GPHPYP +VRDFQS+IG E +Q L ++ACVG
Sbjct: 152 AIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVG 211
Query: 190 GGSNALG 196
GGSNA G
Sbjct: 212 GGSNAAG 218
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 290 bits (745), Expect = 4e-95
Identities = 107/211 (50%), Positives = 145/211 (68%), Gaps = 12/211 (5%)
Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 255
GRPTP+Y+ K +S L G++I+LKREDLN TGAHK+NN + Q+LLAK + KKR+I ETGA
Sbjct: 60 GRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGA 119
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 313
G HGV+TAT+ L LE IY+GE D +RQ+ NV ++KLLG V V G LKEA++
Sbjct: 120 GQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDS 179
Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-----KYIL 368
A +D+ + N+HY IG+ GPHP+P +VRDFQS+IG E +Q F ++
Sbjct: 180 AFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQ----FLEMTGRLPDAVV 235
Query: 369 ACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
ACVGGGSNA+G+F F++ + +LV +E G
Sbjct: 236 ACVGGGSNAIGLFSAFLDDESVRLVGVEPAG 266
Score = 275 bits (706), Expect = 2e-89
Identities = 101/191 (52%), Positives = 133/191 (69%), Gaps = 11/191 (5%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPTP+Y+ K +S L G++I+LKREDLN TGAHK+NN + Q+LLAK + KKR+I ETGA
Sbjct: 60 GRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGA 119
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV+TAT+ L LE IY+GE D +RQ+ NV ++KLLG V V G LKEA++
Sbjct: 120 GQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDS 179
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-----KYIL 185
A +D+ + N+HY IG+ GPHP+P +VRDFQS+IG E +Q F ++
Sbjct: 180 AFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQ----FLEMTGRLPDAVV 235
Query: 186 ACVGGGSNALG 196
ACVGGGSNA+G
Sbjct: 236 ACVGGGSNAIG 246
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit. Tryptophan
synthase catalyzes the last step in the biosynthesis of
tryptophan. the beta chain contains the functional
domain for or the synthesis of tryptophan from indole
and serine. The enzyme requires pyridoxal-phosphate as a
cofactor. The pyridoxal-P attachment site is contained
within the conserved region
[LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P
attachment site] which is present between residues
90-100 of the model [Amino acid biosynthesis, Aromatic
amino acid family].
Length = 385
Score = 281 bits (722), Expect = 5e-92
Identities = 112/222 (50%), Positives = 159/222 (71%), Gaps = 6/222 (2%)
Query: 192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIIC 251
N GRPTP+ + N++ L G+KI+LKREDLN TGAHK+NN++ Q+LLAK + KKRII
Sbjct: 44 RNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIA 103
Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKE 309
ETGAG HGV+TAT+ LL L+ +Y+G D +RQ NV +++LLG V V G+ LK+
Sbjct: 104 ETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKD 163
Query: 310 AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYIL 368
A+NEA++DW ++ ++HY++G+A GPHP+PT+VRDFQS+IG E +Q L ++
Sbjct: 164 AVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVI 223
Query: 369 ACVGGGSNALGIFYTFI-NSNFKLVAIESG--GISKKRTASR 407
ACVGGGSNA+GIFY FI + + +L+ +E+G GI + A+
Sbjct: 224 ACVGGGSNAIGIFYAFIDDPSVQLIGVEAGGLGIDTDKHAAT 265
Score = 261 bits (669), Expect = 5e-84
Identities = 100/187 (53%), Positives = 139/187 (74%), Gaps = 3/187 (1%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPTP+ + N++ L G+KI+LKREDLN TGAHK+NN++ Q+LLAK + KKRII ETGA
Sbjct: 48 GRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETGA 107
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV+TAT+ LL L+ +Y+G D +RQ NV +++LLG V V G+ LK+A+NE
Sbjct: 108 GQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNE 167
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ-LNFNFYNKKYILACVG 189
A++DW ++ ++HY++G+A GPHP+PT+VRDFQS+IG E +Q L ++ACVG
Sbjct: 168 ALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVG 227
Query: 190 GGSNALG 196
GGSNA+G
Sbjct: 228 GGSNAIG 234
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 263 bits (675), Expect = 2e-82
Identities = 114/222 (51%), Positives = 159/222 (71%), Gaps = 11/222 (4%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
N GRPTP+ K +S+I G++I+LKREDLN TG+HK+NN++ Q+LLAK + K RII E
Sbjct: 266 NYAGRPTPLTEAKRLSDIY-GARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAE 324
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEA 310
TGAG HGV+TAT+C L L+ I++GE D KRQ +NV+++KLLG V V G+ LK+A
Sbjct: 325 TGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDA 384
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL---NFNFYNKKYI 367
+NEAI+DW ++ ++HYLIG+A GPHPYP +V FQS+IG E +QL + I
Sbjct: 385 VNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPD--AI 442
Query: 368 LACVGGGSNALGIFYTFIN-SNFKLVAIESG--GISKKRTAS 406
+ACVGGGSNA+GIFY F++ + KL+ +E+G G++ A+
Sbjct: 443 IACVGGGSNAIGIFYHFLDDPSVKLIGVEAGGKGVNTGEHAA 484
Score = 244 bits (624), Expect = 5e-75
Identities = 103/189 (54%), Positives = 139/189 (73%), Gaps = 8/189 (4%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPTP+ K +S+I G++I+LKREDLN TG+HK+NN++ Q+LLAK + K RII ETGA
Sbjct: 269 GRPTPLTEAKRLSDIY-GARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGA 327
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV+TAT+C L L+ I++GE D KRQ +NV+++KLLG V V G+ LK+A+NE
Sbjct: 328 GQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNE 387
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL---NFNFYNKKYILAC 187
AI+DW ++ ++HYLIG+A GPHPYP +V FQS+IG E +QL + I+AC
Sbjct: 388 AIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPD--AIIAC 445
Query: 188 VGGGSNALG 196
VGGGSNA+G
Sbjct: 446 VGGGSNAIG 454
>gnl|CDD|215333 PLN02618, PLN02618, tryptophan synthase, beta chain.
Length = 410
Score = 253 bits (649), Expect = 9e-81
Identities = 107/213 (50%), Positives = 150/213 (70%), Gaps = 9/213 (4%)
Query: 195 LGRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRI 249
+GR TP+Y+ + ++ K G +I+LKREDLN TGAHK+NN++AQ+LLAK L KKRI
Sbjct: 63 VGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRI 122
Query: 250 ICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NL 307
I ETGAG HGV+TAT C LE I+Y+G D +RQ +NV +++LLG V V G L
Sbjct: 123 IAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATL 182
Query: 308 KEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYI 367
K+A +EAI+DW N+ +HY++G+ +GPHPYP +VRDF S+IG E +Q + K +
Sbjct: 183 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDV 242
Query: 368 L-ACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
L ACVGGGSNA+G+F+ FI+ + +L+ +E+ G
Sbjct: 243 LVACVGGGSNAMGLFHEFIDDEDVRLIGVEAAG 275
Score = 238 bits (609), Expect = 8e-75
Identities = 101/192 (52%), Positives = 135/192 (70%), Gaps = 8/192 (4%)
Query: 13 GRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRII 67
GR TP+Y+ + ++ K G +I+LKREDLN TGAHK+NN++AQ+LLAK L KKRII
Sbjct: 64 GRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRII 123
Query: 68 CETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLK 125
ETGAG HGV+TAT C LE I+Y+G D +RQ +NV +++LLG V V G LK
Sbjct: 124 AETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLK 183
Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
+A +EAI+DW N+ +HY++G+ +GPHPYP +VRDF S+IG E +Q + K +L
Sbjct: 184 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVL 243
Query: 186 -ACVGGGSNALG 196
ACVGGGSNA+G
Sbjct: 244 VACVGGGSNAMG 255
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate
synthase/tryptophan synthase subunit beta; Provisional.
Length = 695
Score = 224 bits (571), Expect = 1e-66
Identities = 106/240 (44%), Positives = 154/240 (64%), Gaps = 23/240 (9%)
Query: 169 EIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILK-----GSKIFLKREDL 223
E H++L N++Y+ GRP+P+ + +K +++FLKREDL
Sbjct: 310 EFHKELAT--LNQRYV-----------GRPSPLTEAPRFAERVKEKTGLDARVFLKREDL 356
Query: 224 NFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYK 283
N TGAHK+NN++ Q+LL K + K R+I ETGAG HGV+TAT C +L L+ IY+G+ D +
Sbjct: 357 NHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDAR 416
Query: 284 RQNINVKKIKLLGGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI 341
RQ +NV ++++LG V V G+ LK+A+NEA++DW N+ ++HYL+GT +GPHP+P +
Sbjct: 417 RQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAM 476
Query: 342 VRDFQSIIGYEIHQQLN--FNFYNKKYILACVGGGSNALGIFYTFINS-NFKLVAIESGG 398
VRDFQ IIG E QQL + + I ACVGGGSNA+G+ F++ L E+GG
Sbjct: 477 VRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLDDERVNLYGYEAGG 536
Score = 216 bits (552), Expect = 8e-64
Identities = 96/193 (49%), Positives = 135/193 (69%), Gaps = 9/193 (4%)
Query: 13 GRPTPIYYCKNISNILK-----GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRII 67
GRP+P+ + +K +++FLKREDLN TGAHK+NN++ Q+LL K + K R+I
Sbjct: 324 GRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVI 383
Query: 68 CETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LK 125
ETGAG HGV+TAT C +L L+ IY+G+ D +RQ +NV ++++LG V V G+ LK
Sbjct: 384 AETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILK 443
Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLN--FNFYNKKY 183
+A+NEA++DW N+ ++HYL+GT +GPHP+P +VRDFQ IIG E QQL + +
Sbjct: 444 DAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDA 503
Query: 184 ILACVGGGSNALG 196
I ACVGGGSNA+G
Sbjct: 504 ICACVGGGSNAIG 516
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 140 bits (355), Expect = 3e-39
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 22/208 (10%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK---FLKKKRIICETGA 255
TP+ K +S + G+ I+LK E LN TG+ K ++ LLA+ L K II TG
Sbjct: 1 TPLVRLKRLSKLG-GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTG- 58
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 315
G G++ A + L L+ I + E V +++ LG V LV G+ +A+ A
Sbjct: 59 GNTGIALAAAAARLGLKCTIVMPEGA---SPEKVAQMRALGAEVVLVP-GDFDDAIALAK 114
Query: 316 KDWSNNILNSHYLIGTASGPHPY-PTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
+ + ++Y+ + + Q IG EI +QL ++ VGGG
Sbjct: 115 ELAEED-PGAYYV-------NQFDNPANIAGQGTIGLEILEQLGGQ--KPDAVVVPVGGG 164
Query: 375 SNALGIFYTF--INSNFKLVAIESGGIS 400
N GI + N K++ +E ++
Sbjct: 165 GNIAGIARALKELLPNVKVIGVEPEVVT 192
Score = 129 bits (328), Expect = 3e-35
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAK---FLKKKRIICETGA 72
TP+ K +S + G+ I+LK E LN TG+ K ++ LLA+ L K II TG
Sbjct: 1 TPLVRLKRLSKLG-GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTG- 58
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
G G++ A + L L+ I + E V +++ LG V LV G+ +A+ A
Sbjct: 59 GNTGIALAAAAARLGLKCTIVMPEGA---SPEKVAQMRALGAEVVLVP-GDFDDAIALAK 114
Query: 133 KDWSNNILNSHYLIGTASGPHPY-PTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 191
+ + ++Y+ + + Q IG EI +QL ++ VGGG
Sbjct: 115 ELAEED-PGAYYV-------NQFDNPANIAGQGTIGLEILEQLGGQ--KPDAVVVPVGGG 164
Query: 192 SNALG 196
N G
Sbjct: 165 GNIAG 169
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase
beta-subunit (paralog of TrpB) [General function
prediction only].
Length = 432
Score = 112 bits (281), Expect = 3e-27
Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 31/230 (13%)
Query: 196 GRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
GRPTP+ KN+ L ++I+ K E + TG+HK+N ++AQ+ AK KR+ ETG
Sbjct: 76 GRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETG 135
Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY-----LVQYGN--L 307
AG G + + + L L++ +++ Y ++ ++L G V L ++G L
Sbjct: 136 AGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKIL 195
Query: 308 KE----------AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 357
KE A++EAI+ N N+ Y +G+ V Q++IG E +QL
Sbjct: 196 KEDPDHPGSLGIAISEAIEYALKN-ENTKYSLGSVL------NHVLLHQTVIGLEAKKQL 248
Query: 358 NFNFYNKKYILACVGGGSNALGIFYTFIN------SNFKLVAIESGGISK 401
+ I+ CVGGGSN G+ Y FI + +A+E K
Sbjct: 249 EQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPK 298
Score = 103 bits (259), Expect = 3e-24
Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 30/222 (13%)
Query: 13 GRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 71
GRPTP+ KN+ L ++I+ K E + TG+HK+N ++AQ+ AK KR+ ETG
Sbjct: 76 GRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETG 135
Query: 72 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY-----LVQYGN--L 124
AG G + + + L L++ +++ Y ++ ++L G V L ++G L
Sbjct: 136 AGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKIL 195
Query: 125 KE----------AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 174
KE A++EAI+ N N+ Y +G+ V Q++IG E +QL
Sbjct: 196 KEDPDHPGSLGIAISEAIEYALKN-ENTKYSLGSVL------NHVLLHQTVIGLEAKKQL 248
Query: 175 NFNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKI 216
+ I+ CVGGGSN G P I + L+G K
Sbjct: 249 EQAGEDPDVIIGCVGGGSNFAGLTYPF-----IGDKLRGKKE 285
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like
enzyme. This model represents a family of
pyridoxal-phosphate dependent enzyme (pfam00291) closely
related to the beta subunit of tryptophan synthase
(TIGR00263). However, the only case in which a member of
this family replaces a member of TIGR00263 is in
Sulfolobus species which contain two sequences which hit
this model, one of which is proximal to the alpha
subunit. In every other case so far, either the species
appears not to make tryptophan (there is no trp synthase
alpha subunit), or a trp synthase beta subunit matching
TIGR00263 is also found [Unknown function, Enzymes of
unknown specificity].
Length = 419
Score = 109 bits (273), Expect = 3e-26
Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 31/226 (13%)
Query: 195 LGRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICET 253
+GRPTP+ K + +L ++I+ K E ++ TG+HK+N +IAQ+ AK KR++ ET
Sbjct: 65 IGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTET 124
Query: 254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTV-------------Y 300
GAG G + + + L LE +++ + ++ ++L G V
Sbjct: 125 GAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREV 184
Query: 301 LVQY----GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ 356
L + G+L A++EAI+ ++ ++ Y +G+ V Q++IG E +Q
Sbjct: 185 LKEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSVLNH------VLLHQTVIGLEAKKQ 237
Query: 357 LNFNFYNKKYILACVGGGSNALGIFYTFI------NSNFKLVAIES 396
+ + I+ CVGGGSN G+ + F+ + + +A E
Sbjct: 238 MEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEP 283
Score = 104 bits (260), Expect = 1e-24
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 25/206 (12%)
Query: 13 GRPTPIYYCKNISNILKG-SKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 71
GRPTP+ K + +L ++I+ K E ++ TG+HK+N +IAQ+ AK KR++ ETG
Sbjct: 66 GRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETG 125
Query: 72 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTV-------------YL 118
AG G + + + L LE +++ + ++ ++L G V L
Sbjct: 126 AGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVL 185
Query: 119 VQY----GNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQL 174
+ G+L A++EAI+ ++ ++ Y +G+ V Q++IG E +Q+
Sbjct: 186 KEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSVLNH------VLLHQTVIGLEAKKQM 238
Query: 175 NFNFYNKKYILACVGGGSNALGRPTP 200
+ I+ CVGGGSN G P
Sbjct: 239 EEAGEDPDVIIGCVGGGSNFAGLAFP 264
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 103 bits (258), Expect = 5e-25
Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 15/206 (7%)
Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
PTP+ + G++++LK E LN TG+ K A LL + L++ + E
Sbjct: 4 GIGPTPLVRLPSPLL---GARVYLKLESLNPTGSFKDR--GAAYLLLRALERGATVVEAS 58
Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEA 314
+G G + A + L L+ I + E + ++ LG V LV + E
Sbjct: 59 SGNTGRALAAAAARLGLKVTIVVPEGASP---GKLLLMRALGAEVILVVSEGDYDDALEL 115
Query: 315 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
++ + + G V IG EI +QL + ++ VGGG
Sbjct: 116 AEEAAELL---AAYDGPIPLGQYNNPNVIAGYKTIGLEILEQLGQG--DPDAVVVPVGGG 170
Query: 375 SNALGI--FYTFINSNFKLVAIESGG 398
A GI + +++ +E G
Sbjct: 171 GLAAGIARGLKELGPGIRVIGVEPEG 196
Score = 98.6 bits (246), Expect = 2e-23
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 13/183 (7%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 73
PTP+ + G++++LK E LN TG+ K A LL + L++ + E +G
Sbjct: 6 GPTPLVRLPSPLL---GARVYLKLESLNPTGSFKDR--GAAYLLLRALERGATVVEASSG 60
Query: 74 MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIK 133
G + A + L L+ I + E + ++ LG V LV + E +
Sbjct: 61 NTGRALAAAAARLGLKVTIVVPEGASP---GKLLLMRALGAEVILVVSEGDYDDALELAE 117
Query: 134 DWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSN 193
+ + + G V IG EI +QL + ++ VGGG
Sbjct: 118 EAAELL---AAYDGPIPLGQYNNPNVIAGYKTIGLEILEQLGQG--DPDAVVVPVGGGGL 172
Query: 194 ALG 196
A G
Sbjct: 173 AAG 175
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed.
Length = 427
Score = 97.6 bits (244), Expect = 3e-22
Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 47/235 (20%)
Query: 194 ALGRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRI 249
L RPTP+ + + L +KI+ K E ++ TG+HK N ++AQ A + KK KR+
Sbjct: 73 RLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQ---AYYNKKEGIKRL 129
Query: 250 ICETGAGMHGVSTATSCCLLNLESIIYIGENDYK----RQNINVKKIKLLGGTVY----- 300
ETGAG G + A +C L LE +++ Y+ R+++ ++ G V
Sbjct: 130 TTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSL----METYGAEVIPSPSD 185
Query: 301 LVQYGN--LKE----------AMNEAIKDWSNNILNSHYLIGTASG-PHPYPTIVRDFQS 347
L + G L E A++EA++D + ++ Y +G S H V Q+
Sbjct: 186 LTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRP-DTKYALG--SVLNH-----VLLHQT 237
Query: 348 IIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFI------NSNFKLVAIES 396
+IG E +QL ++ CVGGGSN G+ + F+ + + +A+E
Sbjct: 238 VIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEP 292
Score = 87.2 bits (217), Expect = 9e-19
Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 41/207 (19%)
Query: 13 GRPTPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKK---KRIIC 68
RPTP+ + + L +KI+ K E ++ TG+HK N ++AQ A + KK KR+
Sbjct: 75 WRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQ---AYYNKKEGIKRLTT 131
Query: 69 ETGAGMHGVSTATSCCLLNLESIIYIGENDYK----RQNINVKKIKLLGGTVY-----LV 119
ETGAG G + A +C L LE +++ Y+ R+++ ++ G V L
Sbjct: 132 ETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSL----METYGAEVIPSPSDLT 187
Query: 120 QYGN--LKE----------AMNEAIKDWSNNILNSHYLIGTASG-PHPYPTIVRDFQSII 166
+ G L E A++EA++D + ++ Y +G S H V Q++I
Sbjct: 188 EAGRKILAEDPDHPGSLGIAISEAVEDAAKRP-DTKYALG--SVLNH-----VLLHQTVI 239
Query: 167 GYEIHQQLNFNFYNKKYILACVGGGSN 193
G E +QL ++ CVGGGSN
Sbjct: 240 GLEAKKQLELAGEYPDVVIGCVGGGSN 266
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 79.6 bits (197), Expect = 2e-16
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 27/190 (14%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
PTP+ ++S L G++I+LKRE+L G+ K+ N ++ SL + + +I +
Sbjct: 24 NPTPLQRSPSLSERL-GAEIYLKRENLQPVGSFKIRGAYNKLS-SLSEEEERAAGVIAAS 81
Query: 254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMN 312
AG H A + L +++ I + E K I V + G V + +G N +A
Sbjct: 82 -AGNHAQGVAYAAKRLGIKATIVMPETTPK---IKVDATRGYGAEV--ILHGDNFDDAYA 135
Query: 313 EAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYILAC 370
A + L + P+ P ++ Q I EI +QL +
Sbjct: 136 AAEELAEEEGL---TFV------PPFDDPDVIAG-QGTIALEILEQLPDLP---DAVFVP 182
Query: 371 VGGGSNALGI 380
VGGG GI
Sbjct: 183 VGGGGLISGI 192
Score = 78.4 bits (194), Expect = 5e-16
Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
PTP+ ++S L G++I+LKRE+L G+ K+ N ++ SL + + +I +
Sbjct: 24 NPTPLQRSPSLSERL-GAEIYLKRENLQPVGSFKIRGAYNKLS-SLSEEEERAAGVIAAS 81
Query: 71 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMN 129
AG H A + L +++ I + E K I V + G V + +G N +A
Sbjct: 82 -AGNHAQGVAYAAKRLGIKATIVMPETTPK---IKVDATRGYGAEV--ILHGDNFDDAYA 135
Query: 130 EAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYILAC 187
A + L + P+ P ++ Q I EI +QL +
Sbjct: 136 AAEELAEEEGL---TFV------PPFDDPDVIAG-QGTIALEILEQLPDLP---DAVFVP 182
Query: 188 VGGGS 192
VGGG
Sbjct: 183 VGGGG 187
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 60.6 bits (148), Expect = 3e-10
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 35/212 (16%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
R TP+ +S +L G++++LK E+L TG+ K+ N + L++ + K ++ +
Sbjct: 16 RRTPLLTSPTLSELL-GAEVYLKCENLQKTGSFKIRGAYNKLLS--LSEEERAKGVVAAS 72
Query: 254 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYGN-LKEA 310
AG H A + LL + + I + E K + G V V YG EA
Sbjct: 73 -AGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDA-----TRAYGAEV--VLYGEDFDEA 124
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
+A + L I HP+ P ++ Q IG EI +Q+ + +
Sbjct: 125 EAKARELAEEEGL---TFI------HPFDDPDVIAG-QGTIGLEILEQVP----DLDAVF 170
Query: 369 ACVGGGSNALGIFYTF--INSNFKLVAIESGG 398
VGGG GI ++ N K++ +E G
Sbjct: 171 VPVGGGGLIAGIATAVKALSPNTKVIGVEPEG 202
Score = 59.0 bits (144), Expect = 1e-09
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 33/187 (17%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
R TP+ +S +L G++++LK E+L TG+ K+ N + L++ + K ++ +
Sbjct: 16 RRTPLLTSPTLSELL-GAEVYLKCENLQKTGSFKIRGAYNKLLS--LSEEERAKGVVAAS 72
Query: 71 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYGN-LKEA 127
AG H A + LL + + I + E K + G V V YG EA
Sbjct: 73 -AGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDA-----TRAYGAEV--VLYGEDFDEA 124
Query: 128 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
+A + L I HP+ P ++ Q IG EI +Q+ + +
Sbjct: 125 EAKARELAEEEGL---TFI------HPFDDPDVIAG-QGTIGLEILEQVP----DLDAVF 170
Query: 186 ACVGGGS 192
VGGG
Sbjct: 171 VPVGGGG 177
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 58.8 bits (143), Expect = 1e-09
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 42/217 (19%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETGA 255
TP+ + L G +++K E LN TG+ K M ++++ AK L K + C +
Sbjct: 23 TPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSK---AKELGVKAVACAS-T 78
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN----LKEAM 311
G S A ++ ++++ K + + G TV V+ GN L+
Sbjct: 79 GNTSASLAAYAARAGIKCVVFLPAG--KALG-KLAQALAYGATVLAVE-GNFDDALRLVR 134
Query: 312 NEAIKDW--SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILA 369
A ++W +N LN + L G + I +EI +QL + Y++
Sbjct: 135 ELAEENWIYLSNSLNPYRLEGQKT---------------IAFEIAEQLGWE--VPDYVVV 177
Query: 370 CVGGGSNALGIFYTF--------INSNFKLVAIESGG 398
VG G N I+ F I+ ++V +++ G
Sbjct: 178 PVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEG 214
Score = 54.9 bits (133), Expect = 2e-08
Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 34/190 (17%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETGA 72
TP+ + L G +++K E LN TG+ K M ++++ AK L K + C +
Sbjct: 23 TPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSK---AKELGVKAVACAS-T 78
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN----LKEAM 128
G S A ++ ++++ K + + G TV V+ GN L+
Sbjct: 79 GNTSASLAAYAARAGIKCVVFLPAG--KALG-KLAQALAYGATVLAVE-GNFDDALRLVR 134
Query: 129 NEAIKDW--SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILA 186
A ++W +N LN + L G + I +EI +QL + Y++
Sbjct: 135 ELAEENWIYLSNSLNPYRLEGQKT---------------IAFEIAEQLGWE--VPDYVVV 177
Query: 187 CVGGGSNALG 196
VG G N
Sbjct: 178 PVGNGGNITA 187
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase. This model represents
threonine dehydratase, the first step in the pathway
converting threonine into isoleucine. At least two other
clades of biosynthetic threonine dehydratases have been
charcterized (TIGR01124 and TIGR01127). Those sequences
described by this model are exclusively found in species
containg the rest of the isoleucine pathway and which
are generally lacking in members of the those other two
clades of threonine dehydratases. Members of this clade
are also often gene clustered with other elements of the
isoleucine pathway [Amino acid biosynthesis, Pyruvate
family].
Length = 409
Score = 47.4 bits (113), Expect = 7e-06
Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 29/211 (13%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
TP+ + +S G+ I+LKREDL ++K+ N + Q L+ K ++C +
Sbjct: 15 PHTPLQLNERLSEKY-GANIYLKREDLQPVRSYKIRGAYNFLKQ--LSDAQLAKGVVCAS 71
Query: 254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGT-VYLVQYGN-LKEAM 311
AG H A +C L + +++ K++ + ++K+ GG + ++ G+ +
Sbjct: 72 -AGNHAQGFAYACRHLGVHGTVFMPATTPKQK---IDRVKIFGGEFIEIILVGDTFDQCA 127
Query: 312 NEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYILA 369
A + + + I P+ P I+ Q + EI QL Y++
Sbjct: 128 AAAREHVED---HGGTFI------PPFDDPRIIEG-QGTVAAEILDQLP---EKPDYVVV 174
Query: 370 CVGGG--SNALGIFYTFINSNFKLVAIESGG 398
VGGG + L + + K++ +E G
Sbjct: 175 PVGGGGLISGLTTYLAGTSPKTKIIGVEPEG 205
Score = 44.4 bits (105), Expect = 8e-05
Identities = 46/205 (22%), Positives = 86/205 (41%), Gaps = 27/205 (13%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
TP+ + +S G+ I+LKREDL ++K+ N + Q L+ K ++C +
Sbjct: 15 PHTPLQLNERLSEKY-GANIYLKREDLQPVRSYKIRGAYNFLKQ--LSDAQLAKGVVCAS 71
Query: 71 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGT-VYLVQYGN-LKEAM 128
AG H A +C L + +++ K++ + ++K+ GG + ++ G+ +
Sbjct: 72 -AGNHAQGFAYACRHLGVHGTVFMPATTPKQK---IDRVKIFGGEFIEIILVGDTFDQCA 127
Query: 129 NEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYILA 186
A + + + I P+ P I+ Q + EI QL Y++
Sbjct: 128 AAAREHVED---HGGTFI------PPFDDPRIIEG-QGTVAAEILDQLP---EKPDYVVV 174
Query: 187 CVGGGSNALGRPTPIYYCKNISNIL 211
VGGG G T + + I+
Sbjct: 175 PVGGGGLISGLTTYLAGTSPKTKII 199
>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long
form. This model describes a form of threonine
ammonia-lyase, a pyridoxal-phosphate dependent enzyme,
with two copies of the threonine dehydratase C-terminal
domain (pfam00585). Members with known function
participate in isoleucine biosynthesis and are inhibited
by isoleucine. Alternate name: threonine deaminase,
threonine dehydratase. Forms scoring between the trusted
and noise cutoff tend to branch with this subgroup of
threonine ammonia-lyase phylogenetically but have only a
single copy of the C-terminal domain [Amino acid
biosynthesis, Pyruvate family].
Length = 499
Score = 43.2 bits (102), Expect = 2e-04
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 24/186 (12%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETGA 255
TP+ +S L G++I +KREDL + K+ N +AQ L+ K + +I + A
Sbjct: 18 TPLQKAAKLSERL-GNRILIKREDLQPVFSFKLRGAYNKMAQ--LSPEQKARGVIAAS-A 73
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEA 314
G H A S L L+++I + E I V ++ GG V L +G N +A +A
Sbjct: 74 GNHAQGVAFSAARLGLKALIVMPETTPD---IKVDAVRGFGGEVVL--HGANFDDAKAKA 128
Query: 315 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
I+ L T P P ++ Q + EI +Q+ + VGGG
Sbjct: 129 IELSQEKGL-------TFIHPFDDPLVIAG-QGTLALEILRQVANPLD---AVFVPVGGG 177
Query: 375 SNALGI 380
A G+
Sbjct: 178 GLAAGV 183
Score = 41.6 bits (98), Expect = 5e-04
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETGA 72
TP+ +S L G++I +KREDL + K+ N +AQ L+ K + +I + A
Sbjct: 18 TPLQKAAKLSERL-GNRILIKREDLQPVFSFKLRGAYNKMAQ--LSPEQKARGVIAAS-A 73
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEAMNEA 131
G H A S L L+++I + E I V ++ GG V L +G N +A +A
Sbjct: 74 GNHAQGVAFSAARLGLKALIVMPETTPD---IKVDAVRGFGGEVVL--HGANFDDAKAKA 128
Query: 132 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 191
I+ L T P P ++ Q + EI +Q+ + VGGG
Sbjct: 129 IELSQEKGL-------TFIHPFDDPLVIAG-QGTLALEILRQVANPLD---AVFVPVGGG 177
Query: 192 SNALG 196
A G
Sbjct: 178 GLAAG 182
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 42.0 bits (99), Expect = 3e-04
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMH 258
TP+ + + L KI+LK E N TG K + A A L I T G +
Sbjct: 16 TPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGITVGT-CGNY 74
Query: 259 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDW 318
G S A L L+++I+I + Y N VK+++ G + V G +EA+ E + +
Sbjct: 75 GASIAYFARLYGLKAVIFIPRS-YS--NSRVKEMEKYGAEIIYVD-GKYEEAV-ERSRKF 129
Query: 319 SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNAL 378
+ N Y A+ + + S I YEI++ L + VG G+
Sbjct: 130 AKE--NGIY---DANPGSVNSVVDIEAYSAIAYEIYEALGDVPD---AVAVPVGNGTTLA 181
Query: 379 GIFYTFI 385
GI++ F
Sbjct: 182 GIYHGFR 188
Score = 37.0 bits (86), Expect = 0.014
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 20/198 (10%)
Query: 8 YNPKKGRP--TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKR 65
+ ++ P TP+ + + L KI+LK E N TG K + A A L
Sbjct: 6 SSSEEKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSG 65
Query: 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLK 125
I T G +G S A L L+++I+I + Y N VK+++ G + V G +
Sbjct: 66 ITVGT-CGNYGASIAYFARLYGLKAVIFIPRS-YS--NSRVKEMEKYGAEIIYVD-GKYE 120
Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
EA+ E + ++ N Y A+ + + S I YEI++ L +
Sbjct: 121 EAV-ERSRKFAKE--NGIY---DANPGSVNSVVDIEAYSAIAYEIYEALGDVPD---AVA 171
Query: 186 ACVGGGSNALGRPTPIYY 203
VG G+ G IY+
Sbjct: 172 VPVGNGTTLAG----IYH 185
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional.
Length = 404
Score = 40.5 bits (96), Expect = 0.001
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 43/191 (22%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
R TP+ Y + +S + G++++LK E+L TG+ K+ N IA L++ + + ++ +
Sbjct: 21 RRTPLEYSRTLSELT-GAEVYLKCENLQRTGSFKIRGAYNKIAS--LSEEERARGVVAAS 77
Query: 71 GAGMH--GVSTATSCCLLNLESIIYIGEND--YKRQNINVKKIKLLGGTVYLVQYGN-LK 125
AG H GV+ A S LL +++ I + E K VK + G V L +G+
Sbjct: 78 -AGNHAQGVAYAAS--LLGIKATIVMPETAPLSK-----VKATRSYGAEVVL--HGDVYD 127
Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 180
EA+ +A + + +G HP+ P ++ Q IG EI + L +
Sbjct: 128 EALAKAQE------------LAEETGATFVHPFDDPDVIAG-QGTIGLEILEDLP----D 170
Query: 181 KKYILACVGGG 191
++ +GGG
Sbjct: 171 VDTVVVPIGGG 181
Score = 40.5 bits (96), Expect = 0.001
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 43/191 (22%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
R TP+ Y + +S + G++++LK E+L TG+ K+ N IA L++ + + ++ +
Sbjct: 21 RRTPLEYSRTLSELT-GAEVYLKCENLQRTGSFKIRGAYNKIAS--LSEEERARGVVAAS 77
Query: 254 GAGMH--GVSTATSCCLLNLESIIYIGEND--YKRQNINVKKIKLLGGTVYLVQYGN-LK 308
AG H GV+ A S LL +++ I + E K VK + G V L +G+
Sbjct: 78 -AGNHAQGVAYAAS--LLGIKATIVMPETAPLSK-----VKATRSYGAEVVL--HGDVYD 127
Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 363
EA+ +A + + +G HP+ P ++ Q IG EI + L +
Sbjct: 128 EALAKAQE------------LAEETGATFVHPFDDPDVIAG-QGTIGLEILEDLP----D 170
Query: 364 KKYILACVGGG 374
++ +GGG
Sbjct: 171 VDTVVVPIGGG 181
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 40.8 bits (96), Expect = 0.001
Identities = 52/230 (22%), Positives = 80/230 (34%), Gaps = 51/230 (22%)
Query: 16 TPIYYCKNISNILK--GSKIFLKREDLNFTGAHK-MNNSIAQSLLAKFLKKKRIIC---- 68
TP+Y ++ L +++K N TG+ K ++ SL + K I+C
Sbjct: 77 TPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELG-AKTILCASSG 135
Query: 69 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKL-----LGGTVYLVQYGN 123
TGA + L+ + + V KL LG V V GN
Sbjct: 136 NTGASAAAYAARA-----GLKVFVLYPKG-------KVSPGKLAQMLTLGAHVIAVD-GN 182
Query: 124 LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKY 183
+A E +K+ N L+ + +PY + Q +EI +QL + +
Sbjct: 183 FDDA-QELVKE----AANREGLLSAVNSINPY---RLEGQKTYAFEIAEQLGWK--APDH 232
Query: 184 ILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNN 233
++ VG G N L I KG K L A MN
Sbjct: 233 VVVPVGNGGNLLA-------------IYKGFKEGLPIG--KIDKAPNMNG 267
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 40.3 bits (94), Expect = 0.001
Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 24/202 (11%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGA 255
+P+ K +S L G K+ LKREDL + K+ A +++AK K K +IC + A
Sbjct: 110 SPLQLAKKLSERL-GVKVLLKREDLQPVFSFKLRG--AYNMMAKLPKEQLDKGVICSS-A 165
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 315
G H A S L +++I + I + ++ LG TV LV + EA A
Sbjct: 166 GNHAQGVALSAQRLGCDAVIAM---PVTTPEIKWQSVERLGATVVLVG-DSYDEAQAYAK 221
Query: 316 KDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGS 375
+ T P +P ++ Q +G EI +Q + I VGGG
Sbjct: 222 QRALEEGR-------TFIPPFDHPDVIAG-QGTVGMEIVRQHQGPLHA---IFVPVGGGG 270
Query: 376 NALGI--FYTFINSNFKLVAIE 395
GI + + K++ +E
Sbjct: 271 LIAGIAAYVKRVRPEVKIIGVE 292
Score = 38.7 bits (90), Expect = 0.004
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK---KKRIICETGA 72
+P+ K +S L G K+ LKREDL + K+ A +++AK K K +IC + A
Sbjct: 110 SPLQLAKKLSERL-GVKVLLKREDLQPVFSFKLRG--AYNMMAKLPKEQLDKGVICSS-A 165
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119
G H A S L +++I + I + ++ LG TV LV
Sbjct: 166 GNHAQGVALSAQRLGCDAVIAM---PVTTPEIKWQSVERLGATVVLV 209
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated.
Length = 420
Score = 40.2 bits (95), Expect = 0.002
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 43/199 (21%)
Query: 198 PTPIYYCKNISNILKGSKIFLKREDLN------FTGAHKMNNSIAQSLLAKFLKKKRIIC 251
TP+ +S G+ ++LKREDL GA+ N+I+Q L+ ++C
Sbjct: 25 ETPLQRNDYLSEKY-GANVYLKREDLQPVRSYKLRGAY---NAISQ--LSDEELAAGVVC 78
Query: 252 ETGAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGT-VYLVQYGN-- 306
+ AG H GV A +C L + +I++ +Q I+ +++ GG V +V G+
Sbjct: 79 AS-AGNHAQGV--AYACRHLGIPGVIFMPVTT-PQQKID--QVRFFGGEFVEIVLVGDTF 132
Query: 307 ---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNF 361
A A + I P+ P ++ Q + EI +QL
Sbjct: 133 DDSAAAAQEYAEE-------TGATFI------PPFDDPDVIAG-QGTVAVEILEQLE-KE 177
Query: 362 YNKKYILACVGGGSNALGI 380
+ Y+ VGGG G+
Sbjct: 178 GSPDYVFVPVGGGGLISGV 196
Score = 40.2 bits (95), Expect = 0.002
Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 43/193 (22%)
Query: 15 PTPIYYCKNISNILKGSKIFLKREDLN------FTGAHKMNNSIAQSLLAKFLKKKRIIC 68
TP+ +S G+ ++LKREDL GA+ N+I+Q L+ ++C
Sbjct: 25 ETPLQRNDYLSEKY-GANVYLKREDLQPVRSYKLRGAY---NAISQ--LSDEELAAGVVC 78
Query: 69 ETGAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGT-VYLVQYGN-- 123
+ AG H GV A +C L + +I++ +Q I+ +++ GG V +V G+
Sbjct: 79 AS-AGNHAQGV--AYACRHLGIPGVIFMPVTT-PQQKID--QVRFFGGEFVEIVLVGDTF 132
Query: 124 ---LKEAMNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNF 178
A A + I P+ P ++ Q + EI +QL
Sbjct: 133 DDSAAAAQEYAEE-------TGATFI------PPFDDPDVIAG-QGTVAVEILEQLE-KE 177
Query: 179 YNKKYILACVGGG 191
+ Y+ VGGG
Sbjct: 178 GSPDYVFVPVGGG 190
>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed.
Length = 504
Score = 39.7 bits (94), Expect = 0.002
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 42/195 (21%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLN--FT----GAHKMNNSIAQSLLAKFLKKKRIICE 252
TP+ +S L G+++ LKREDL F+ GA+ N +AQ L + + +I
Sbjct: 21 TPLEKAPKLSARL-GNQVLLKREDLQPVFSFKLRGAY---NKMAQ--LTEEQLARGVITA 74
Query: 253 TGAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKE 309
+ AG H GV A S L ++++I + I V ++ GG V L +G + E
Sbjct: 75 S-AGNHAQGV--ALSAARLGIKAVIVMPVTTPD---IKVDAVRAFGGEVVL--HGDSFDE 126
Query: 310 AMNEAIKDWSNNILNSHYL--IGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 365
A AI+ + L I HP+ P ++ Q I EI QQ
Sbjct: 127 AYAHAIE-----LAEEEGLTFI------HPFDDPDVIAG-QGTIAMEILQQHPHPLD--- 171
Query: 366 YILACVGGGSNALGI 380
+ VGGG G+
Sbjct: 172 AVFVPVGGGGLIAGV 186
Score = 38.6 bits (91), Expect = 0.006
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 42/189 (22%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLN--FT----GAHKMNNSIAQSLLAKFLKKKRIICE 69
TP+ +S L G+++ LKREDL F+ GA+ N +AQ L + + +I
Sbjct: 21 TPLEKAPKLSARL-GNQVLLKREDLQPVFSFKLRGAY---NKMAQ--LTEEQLARGVITA 74
Query: 70 TGAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKE 126
+ AG H GV A S L ++++I + I V ++ GG V L +G + E
Sbjct: 75 S-AGNHAQGV--ALSAARLGIKAVIVMPVTTPD---IKVDAVRAFGGEVVL--HGDSFDE 126
Query: 127 AMNEAIKDWSNNILNSHYL--IGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 182
A AI+ + L I HP+ P ++ Q I EI QQ
Sbjct: 127 AYAHAIE-----LAEEEGLTFI------HPFDDPDVIAG-QGTIAMEILQQHPHPLD--- 171
Query: 183 YILACVGGG 191
+ VGGG
Sbjct: 172 AVFVPVGGG 180
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional.
Length = 338
Score = 39.4 bits (92), Expect = 0.002
Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 41/188 (21%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK----MNNSIAQSLLAKFLKKKRIICETG 71
TPI + ++++ +L G +IF K E L TGA K +N+ + L + +I+ +
Sbjct: 24 TPIVHSESLNEML-GHEIFFKVESLQKTGAFKVRGVLNHLLE--LKEQGKLPDKIVAYS- 79
Query: 72 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY--LVQYGNLKEAMN 129
G HG + A + L +++ IY+ N K+K Y V N ++
Sbjct: 80 TGNHGQAVAYASKLFGIKTRIYLPL--------NTSKVKQQAALYYGGEVILTNTRQEAE 131
Query: 130 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG------YEIHQQLNFNFYNKKY 183
E K+ Y I HP D S I YE QQL F +
Sbjct: 132 EKAKEDEE---QGFYYI------HPS-----DSDSTIAGAGTLCYEALQQLGF---SPDA 174
Query: 184 ILACVGGG 191
I A GGG
Sbjct: 175 IFASCGGG 182
Score = 39.4 bits (92), Expect = 0.002
Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 41/188 (21%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK----MNNSIAQSLLAKFLKKKRIICETG 254
TPI + ++++ +L G +IF K E L TGA K +N+ + L + +I+ +
Sbjct: 24 TPIVHSESLNEML-GHEIFFKVESLQKTGAFKVRGVLNHLLE--LKEQGKLPDKIVAYS- 79
Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY--LVQYGNLKEAMN 312
G HG + A + L +++ IY+ N K+K Y V N ++
Sbjct: 80 TGNHGQAVAYASKLFGIKTRIYLPL--------NTSKVKQQAALYYGGEVILTNTRQEAE 131
Query: 313 EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG------YEIHQQLNFNFYNKKY 366
E K+ Y I HP D S I YE QQL F +
Sbjct: 132 EKAKEDEE---QGFYYI------HPS-----DSDSTIAGAGTLCYEALQQLGF---SPDA 174
Query: 367 ILACVGGG 374
I A GGG
Sbjct: 175 IFASCGGG 182
>gnl|CDD|107210 cd06449, ACCD, Aminocyclopropane-1-carboxylate deaminase (ACCD):
Pyridoxal phosphate (PLP)-dependent enzyme which
catalyzes the conversion of
1-aminocyclopropane-L-carboxylate (ACC), a precursor of
the plant hormone ethylene, to alpha-ketobutyrate and
ammonia.
Length = 307
Score = 39.3 bits (92), Expect = 0.003
Identities = 52/232 (22%), Positives = 86/232 (37%), Gaps = 39/232 (16%)
Query: 199 TPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIA--QSLLAKFLKKKRIICETGA 255
TPI Y +S L G +I+ KR+D N +G N I + LL L K T
Sbjct: 1 TPIQYLPRLSEHLGGKVEIYAKRDDCN-SGLAFGGNKIRKLEYLLPDALAKGADTLVTVG 59
Query: 256 GMHG----VSTATSC-----CLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG- 305
G+ A + C+L E+ + + Y R N+ +++G V LV G
Sbjct: 60 GIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDR-VGNILLSRIMGADVRLVSAGF 118
Query: 306 --NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG--------YEIHQ 355
++++ EA ++ A G PY + +G EI Q
Sbjct: 119 DIGIRKSFEEAAEEV------------EAKGGKPYVIPAGGSEHPLGGLGYVGFVLEIAQ 166
Query: 356 QLNFNFYNKKYILACVGGGSNALGIF--YTFINSNFKLVAIESGGISKKRTA 405
Q + I+ C GS G+ + +++ I++ +K A
Sbjct: 167 QEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKA 218
Score = 37.8 bits (88), Expect = 0.008
Identities = 49/204 (24%), Positives = 75/204 (36%), Gaps = 37/204 (18%)
Query: 16 TPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIA--QSLLAKFLKKKRIICETGA 72
TPI Y +S L G +I+ KR+D N +G N I + LL L K T
Sbjct: 1 TPIQYLPRLSEHLGGKVEIYAKRDDCN-SGLAFGGNKIRKLEYLLPDALAKGADTLVTVG 59
Query: 73 GMHG----VSTATSC-----CLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG- 122
G+ A + C+L E+ + + Y R N+ +++G V LV G
Sbjct: 60 GIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDR-VGNILLSRIMGADVRLVSAGF 118
Query: 123 --NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIG--------YEIHQ 172
++++ EA ++ A G PY + +G EI Q
Sbjct: 119 DIGIRKSFEEAAEEV------------EAKGGKPYVIPAGGSEHPLGGLGYVGFVLEIAQ 166
Query: 173 QLNFNFYNKKYILACVGGGSNALG 196
Q + I+ C GS G
Sbjct: 167 QEEELGFKFDSIVVCSVTGSTHAG 190
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine.
Length = 291
Score = 38.3 bits (90), Expect = 0.005
Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRI-----ICET 70
TP+ +S G++I+ K E N G+ K + IA ++ K+ + I E
Sbjct: 3 TPLVRLNRLSPGT-GAEIYAKLEFFNPGGSVK--DRIALYMIEDAEKRGLLKPGTTIIEP 59
Query: 71 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNI-NVKKIKLLGGTVYLV---QYGNLKE 126
+G G+ A II + E + K ++ LG V L + +K
Sbjct: 60 TSGNTGIGLAMVAAAKGYRFIIVMPET----MSEEKRKLLRALGAEVILTPEAEADGMKG 115
Query: 127 AMNEA------IKDW-----SNNILN--SHYLIGTASGPHPYPTIVRDFQS 164
A+ +A + N N +HY TA P I
Sbjct: 116 AIAKARELAAETPNAFWLNQFENPANPEAHYE-TTA------PEIWEQLDG 159
Score = 38.3 bits (90), Expect = 0.005
Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRI-----ICET 253
TP+ +S G++I+ K E N G+ K + IA ++ K+ + I E
Sbjct: 3 TPLVRLNRLSPGT-GAEIYAKLEFFNPGGSVK--DRIALYMIEDAEKRGLLKPGTTIIEP 59
Query: 254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNI-NVKKIKLLGGTVYLV---QYGNLKE 309
+G G+ A II + E + K ++ LG V L + +K
Sbjct: 60 TSGNTGIGLAMVAAAKGYRFIIVMPET----MSEEKRKLLRALGAEVILTPEAEADGMKG 115
Query: 310 AMNEA------IKDW-----SNNILN--SHYLIGTASGPHPYPTIVRDFQS 347
A+ +A + N N +HY TA P I
Sbjct: 116 AIAKARELAAETPNAFWLNQFENPANPEAHYE-TTA------PEIWEQLDG 159
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional.
Length = 403
Score = 38.2 bits (89), Expect = 0.007
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 27/207 (13%)
Query: 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETG 254
TP Y +S I G++++LK+E+L TGA+K+ N IA +L + +K+ +
Sbjct: 20 KTPFAYAPFLSKIS-GAEVYLKKENLQITGAYKIRGAYNKIA-NLSEE--QKQHGVIAAS 75
Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEA 314
AG H A S ++++I + E + V K LG V L + N EA A
Sbjct: 76 AGNHAQGVAISAKKFGIKAVIVMPEAT---PLLKVSGTKALGAEVIL-KGDNYDEAYAFA 131
Query: 315 IKDWSNNILNSHYLIGTASGPHPYP-TIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGG 373
++ N L I HP+ V Q I E+ +++ + ++ VGG
Sbjct: 132 LEYAKENNLT---FI------HPFEDEEVMAGQGTIALEMLDEIS----DLDMVVVPVGG 178
Query: 374 GSNALGI--FYTFINSNFKLVAIESGG 398
G GI IN N K++ + + G
Sbjct: 179 GGLISGIASAAKQINPNIKIIGVGAKG 205
Score = 35.8 bits (83), Expect = 0.030
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 15 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETG 71
TP Y +S I G++++LK+E+L TGA+K+ N IA +L + +K+ +
Sbjct: 20 KTPFAYAPFLSKIS-GAEVYLKKENLQITGAYKIRGAYNKIA-NLSEE--QKQHGVIAAS 75
Query: 72 AGMHGVSTATSCCLLNLESIIYIGEN 97
AG H A S ++++I + E
Sbjct: 76 AGNHAQGVAISAKKFGIKAVIVMPEA 101
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes,
D-cysteine desulfhydrase family. This model represents
a family of pyridoxal phosphate-dependent enzymes
closely related to (and often designated as putative
examples of) 1-aminocyclopropane-1-carboxylate
deaminase. It appears that members of this family
include both D-cysteine desulfhydrase (EC 4.4.1.15) and
1-aminocyclopropane-1-carboxylate deaminase (EC
3.5.99.7).
Length = 318
Score = 36.7 bits (85), Expect = 0.016
Identities = 56/217 (25%), Positives = 82/217 (37%), Gaps = 30/217 (13%)
Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIA--QSLLAKFLKKKRIICET 253
G PTPI Y +S+ L G +I++KR+D TG N I + LLA L+K T
Sbjct: 5 GAPTPIQYLPRLSDYL-GREIYIKRDD--LTGLAMGGNKIRKLEFLLADALRKGADTVIT 61
Query: 254 GAGM---HGVSTATSCCLLNLESIIY----IGENDYKRQ-NINVKKIKLLGGTVYLVQYG 305
+ H +TA L L ++ IG N N+ L G +
Sbjct: 62 AGAIQSNHARATAAVAAKLGLHCVLLLRNPIGTTAENYLLNGNLLLDDLFGAETRIE--- 118
Query: 306 NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSI--IGY-----EIHQQLN 358
E D + L G PY V S+ +GY EI QQL
Sbjct: 119 -----SCEEYTD-IDAQLEELAERLEKEGFKPYVIPVGGSNSLGALGYVEAALEIAQQLE 172
Query: 359 FNFYNKKYILACVGGGSNA-LGIFYTFINSNFKLVAI 394
++A GG+ A L + + + + +LV +
Sbjct: 173 SEVKFDSIVVASGSGGTIAGLSLGLSHLMPDVELVGV 209
Score = 36.3 bits (84), Expect = 0.023
Identities = 53/199 (26%), Positives = 73/199 (36%), Gaps = 29/199 (14%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIA--QSLLAKFLKKKRIICET 70
G PTPI Y +S+ L G +I++KR+D TG N I + LLA L+K T
Sbjct: 5 GAPTPIQYLPRLSDYL-GREIYIKRDD--LTGLAMGGNKIRKLEFLLADALRKGADTVIT 61
Query: 71 GAGM---HGVSTATSCCLLNLESIIY----IGENDYKRQ-NINVKKIKLLGGTVYLVQYG 122
+ H +TA L L ++ IG N N+ L G +
Sbjct: 62 AGAIQSNHARATAAVAAKLGLHCVLLLRNPIGTTAENYLLNGNLLLDDLFGAETRIE--- 118
Query: 123 NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSI--IGY-----EIHQQLN 175
E D + L G PY V S+ +GY EI QQL
Sbjct: 119 -----SCEEYTD-IDAQLEELAERLEKEGFKPYVIPVGGSNSLGALGYVEAALEIAQQLE 172
Query: 176 FNFYNKKYILACVGGGSNA 194
++A GG+ A
Sbjct: 173 SEVKFDSIVVASGSGGTIA 191
>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated.
Length = 353
Score = 35.6 bits (83), Expect = 0.040
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIIC-ETG 71
TP+ N+S +L G ++++K E LN TG+ K M ++ + AK K +IC TG
Sbjct: 32 TPLIPAPNLSELL-GVEVYVKYEGLNPTGSFKDRGMTMAVTK---AKEEGAKAVICASTG 87
Score = 35.6 bits (83), Expect = 0.040
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIIC-ETG 254
TP+ N+S +L G ++++K E LN TG+ K M ++ + AK K +IC TG
Sbjct: 32 TPLIPAPNLSELL-GVEVYVKYEGLNPTGSFKDRGMTMAVTK---AKEEGAKAVICASTG 87
>gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional.
Length = 403
Score = 35.3 bits (82), Expect = 0.056
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK 47
TP + + +S I G++++LK E+L FT + K
Sbjct: 24 TPCVHSRTLSQIT-GAEVWLKFENLQFTASFK 54
Score = 35.3 bits (82), Expect = 0.056
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK 230
TP + + +S I G++++LK E+L FT + K
Sbjct: 24 TPCVHSRTLSQIT-GAEVWLKFENLQFTASFK 54
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional.
Length = 317
Score = 35.1 bits (81), Expect = 0.059
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 73
R TP+ + +S G +++LK E L TG+ K + + L ++++ + +G
Sbjct: 19 RVTPLEHSPLLSQ-HTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASSG 77
Query: 74 MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 119
HG A + L + +Y E I + I+ LG V L
Sbjct: 78 NHGQGVALAAKLAGIPVTVYAPEQ---ASAIKLDAIRALGAEVRLY 120
Score = 35.1 bits (81), Expect = 0.059
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 256
R TP+ + +S G +++LK E L TG+ K + + L ++++ + +G
Sbjct: 19 RVTPLEHSPLLSQ-HTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASSG 77
Query: 257 MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLV 302
HG A + L + +Y E I + I+ LG V L
Sbjct: 78 NHGQGVALAAKLAGIPVTVYAPEQ---ASAIKLDAIRALGAEVRLY 120
>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated.
Length = 347
Score = 34.0 bits (78), Expect = 0.14
Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 213 GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLE 272
K++ K + L TG+ K + K ++ ++ +G +S A ++
Sbjct: 71 SIKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGINEVVIDS-SGNAALSLALYSLSEGIK 129
Query: 273 SIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIK-DWSNNI------LNS 325
+++ N K + + + LG ++ V+ G+ E EA+K NNI LN
Sbjct: 130 VHVFVSYNASKEK---ISLLSRLGAELHFVE-GDRMEVHEEAVKFSKRNNIPYVSHWLNP 185
Query: 326 HYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTF- 384
++L GT I YEI++Q+ Y VG G+ LGI+ F
Sbjct: 186 YFLEGT---------------KTIAYEIYEQIG----VPDYAFVPVGSGTLFLGIWKGFK 226
Query: 385 -------INSNFKLVAIESGG 398
I+ KLVA+++ G
Sbjct: 227 ELHEMGEISKMPKLVAVQAEG 247
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional.
Length = 349
Score = 33.8 bits (77), Expect = 0.15
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 15 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK--KKRIICETGA 72
PTP++Y + ++LK E+L TG++K+ ++ +LLA + ++ +IC + A
Sbjct: 39 PTPLHYAERFG-------VWLKLENLQRTGSYKVRGAL-NALLAGLERGDERPVICAS-A 89
Query: 73 GMHGVSTATSCCLLNLESI 91
G H A S L +++I
Sbjct: 90 GNHAQGVAWSAYRLGVQAI 108
Score = 33.8 bits (77), Expect = 0.15
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 198 PTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLK--KKRIICETGA 255
PTP++Y + ++LK E+L TG++K+ ++ +LLA + ++ +IC + A
Sbjct: 39 PTPLHYAERFG-------VWLKLENLQRTGSYKVRGAL-NALLAGLERGDERPVICAS-A 89
Query: 256 GMHGVSTATSCCLLNLESI 274
G H A S L +++I
Sbjct: 90 GNHAQGVAWSAYRLGVQAI 108
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 33.6 bits (77), Expect = 0.18
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 11 KKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRII 67
+ R TP+ +S KG +IFLK E++ TG+ K+ N ++ SL +K++ +
Sbjct: 23 GRIRKTPLPRSNYLSERCKG-EIFLKLENMQRTGSFKIRGAFNKLS-SLTDA--EKRKGV 78
Query: 68 CETGAGMHGVSTATSCCLLNLESII 92
AG H A SC LL ++ +
Sbjct: 79 VACSAGNHAQGVALSCALLGIDGKV 103
Score = 32.0 bits (73), Expect = 0.58
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICE 252
R TP+ +S KG +IFLK E++ TG+ K+ N ++ SL +K++ +
Sbjct: 25 IRKTPLPRSNYLSERCKG-EIFLKLENMQRTGSFKIRGAFNKLS-SLTDA--EKRKGVVA 80
Query: 253 TGAGMHGVSTATSCCLLNLESII 275
AG H A SC LL ++ +
Sbjct: 81 CSAGNHAQGVALSCALLGIDGKV 103
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the model
[Amino acid biosynthesis, Aspartate family].
Length = 328
Score = 33.1 bits (76), Expect = 0.25
Identities = 40/248 (16%), Positives = 77/248 (31%), Gaps = 52/248 (20%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETGA 72
TP++ + + +++ N T + K M ++ + A L ++C +
Sbjct: 24 TPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTK---ALELGNDTVLCAS-T 79
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY----GNLKEAM 128
G G + A ++ +I + KL Y + GN +A
Sbjct: 80 GNTGAAAAAYAGKAGVKVVILYPAG-------KISLGKLAQALGYNAEVVAIDGNFDDAQ 132
Query: 129 N---EAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
+ D LNS I PY + Q +E +QL + ++
Sbjct: 133 RLVKQLFGDKEALGLNSVNSI-------PYRL---EGQKTYAFEAVEQLGWE--APDKVV 180
Query: 186 ACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQS---LLAK 242
V N ILKG F ++++ A+ ++
Sbjct: 181 VPVPNSG-------------NFGAILKG---FKEKKEGGLDSLPVKRGIQAEGAADIVRA 224
Query: 243 FLKKKRII 250
FL+ +
Sbjct: 225 FLESGQWE 232
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
Length = 338
Score = 32.0 bits (73), Expect = 0.56
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 29/194 (14%)
Query: 210 ILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRI--ICETGAGMHGVSTATSCC 267
++K I+ K + LN TG++K S L +L +K I I E +G G S A
Sbjct: 61 LIKKGNIWFKLDFLNPTGSYKDRGS---VTLISYLAEKGIKQISEDSSGNAGASIAAYGA 117
Query: 268 LLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHY 327
+E I++ E + +K+I+ G V V+ G+ ++ A S SH
Sbjct: 118 AAGIEVKIFVPETASGGK---LKQIESYGAEVVRVR-GSREDVAKAAEN--SGYYYASHV 171
Query: 328 LIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGIFYTFINS 387
L P RD + YEI + L++ Y+ V G+ LG++ S
Sbjct: 172 L-------QP---QFRDGIRTLAYEIAKDLDWKI--PNYVFIPVSAGTLLLGVY-----S 214
Query: 388 NFKLVAIESGGISK 401
FK + ++SG IS+
Sbjct: 215 GFKHL-LDSGVISE 227
Score = 28.2 bits (63), Expect = 8.2
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 27 ILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRI--ICETGAGMHGVSTATSCC 84
++K I+ K + LN TG++K S L +L +K I I E +G G S A
Sbjct: 61 LIKKGNIWFKLDFLNPTGSYKDRGS---VTLISYLAEKGIKQISEDSSGNAGASIAAYGA 117
Query: 85 LLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHY 144
+E I++ E + +K+I+ G V V+ G+ ++ A S SH
Sbjct: 118 AAGIEVKIFVPETASGGK---LKQIESYGAEVVRVR-GSREDVAKAAEN--SGYYYASHV 171
Query: 145 LIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYI 184
L P RD + YEI + L++ N +I
Sbjct: 172 L-------QP---QFRDGIRTLAYEIAKDLDWKIPNYVFI 201
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches with
the catabolic threonine dehydratase of E. coli; many
members are designated as catabolic for this reason.
However, the catabolic form lacks any pfam00585 domain.
Many members of this model are found in species with
other Ile biosynthetic enzymes [Amino acid biosynthesis,
Pyruvate family].
Length = 380
Score = 31.6 bits (72), Expect = 0.66
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 29/210 (13%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETGA 255
TP+ Y +S+I GS+++LK E+L TG+ K+ N IA L +++R + A
Sbjct: 1 TPLIYSTTLSDIT-GSEVYLKLENLQKTGSFKIRGALNKIAN-LSED--QRQRGVVAASA 56
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 315
G H A + ++++I + E+ + VK K G V L + EA A
Sbjct: 57 GNHAQGVAYAAKKFGIKAVIVMPESAPPSK---VKATKSYGAEVIL-HGDDYDEAYAFAT 112
Query: 316 KDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGG 373
++ HP+ ++ Q IG EI + + + ++ VGG
Sbjct: 113 SLAEEE--GRVFV-------HPFDDEFVMAG-QGTIGLEIMEDIP----DVDTVIVPVGG 158
Query: 374 GSNALGIFYTF--INSNFKLVAIESGGISK 401
G G+ IN N K++ +E+ G
Sbjct: 159 GGLISGVASAAKQINPNVKVIGVEAEGAPS 188
Score = 30.9 bits (70), Expect = 1.1
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETGA 72
TP+ Y +S+I GS+++LK E+L TG+ K+ N IA L +++R + A
Sbjct: 1 TPLIYSTTLSDIT-GSEVYLKLENLQKTGSFKIRGALNKIAN-LSED--QRQRGVVAASA 56
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYL 118
G H A + ++++I + E+ + VK K G V L
Sbjct: 57 GNHAQGVAYAAKKFGIKAVIVMPESAPPSK---VKATKSYGAEVIL 99
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed.
Length = 521
Score = 31.3 bits (71), Expect = 0.97
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIIC 251
+ R TP+ N+S L G+++ LKREDL + K+ N +A+ L A+ + R +
Sbjct: 34 VARETPLQRAPNLSARL-GNQVLLKREDLQPVFSFKIRGAYNKMAR-LPAE--QLARGVI 89
Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 310
AG H A + L ++++I + + V ++ GG V V +G + +A
Sbjct: 90 TASAGNHAQGVALAAARLGVKAVIVMPRT---TPQLKVDGVRAHGGEV--VLHGESFPDA 144
Query: 311 MNEAIK 316
+ A+K
Sbjct: 145 LAHALK 150
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino
acid transport and metabolism].
Length = 323
Score = 30.8 bits (70), Expect = 1.4
Identities = 51/198 (25%), Positives = 78/198 (39%), Gaps = 29/198 (14%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIA--QSLLAKFLKKKRIICET 70
PTPI +S L G +I++KR+DL TG N I + LL + L+K T
Sbjct: 13 FGPTPIQKLPRLSAHL-GVEIYIKRDDL--TGLAFGGNKIRKLEFLLGEALRKGADTLVT 69
Query: 71 GAGM---HGVSTATSCCLLNLESIIYI--GENDYKRQNINVKKIKLLGGTVYLVQYGNLK 125
G+ H TA L L+ ++ + E +Y N N+ KL+G V V G
Sbjct: 70 YGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLL-NGNLLLSKLMGAEVRAVDAGTDI 128
Query: 126 EAMNEAIKDWSNNIL---NSHYLIGTASGPHPYPTIVRDFQSIIGY-----EIHQQLNFN 177
A ++ + + Y+I G P +GY EI +Q
Sbjct: 129 GINASA-EELAEEVRKQGGKPYVI-PEGGSSPLGA--------LGYVRLALEIAEQAEQL 178
Query: 178 FYNKKYILACVGGGSNAL 195
++A GG++A
Sbjct: 179 LKFDSVVVAPGSGGTHAG 196
Score = 30.8 bits (70), Expect = 1.4
Identities = 51/198 (25%), Positives = 78/198 (39%), Gaps = 29/198 (14%)
Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIA--QSLLAKFLKKKRIICET 253
PTPI +S L G +I++KR+DL TG N I + LL + L+K T
Sbjct: 13 FGPTPIQKLPRLSAHL-GVEIYIKRDDL--TGLAFGGNKIRKLEFLLGEALRKGADTLVT 69
Query: 254 GAGM---HGVSTATSCCLLNLESIIYI--GENDYKRQNINVKKIKLLGGTVYLVQYGNLK 308
G+ H TA L L+ ++ + E +Y N N+ KL+G V V G
Sbjct: 70 YGGIQSNHVRQTAAVAAKLGLKCVLILENIEANYLL-NGNLLLSKLMGAEVRAVDAGTDI 128
Query: 309 EAMNEAIKDWSNNIL---NSHYLIGTASGPHPYPTIVRDFQSIIGY-----EIHQQLNFN 360
A ++ + + Y+I G P +GY EI +Q
Sbjct: 129 GINASA-EELAEEVRKQGGKPYVI-PEGGSSPLGA--------LGYVRLALEIAEQAEQL 178
Query: 361 FYNKKYILACVGGGSNAL 378
++A GG++A
Sbjct: 179 LKFDSVVVAPGSGGTHAG 196
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 29.9 bits (68), Expect = 2.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIIC-ETG 71
TP+Y C N+ L ++++K E N TG+ K M + + A L K + C TG
Sbjct: 68 TPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTK---ALELGVKTVACASTG 124
Score = 29.9 bits (68), Expect = 2.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIIC-ETG 254
TP+Y C N+ L ++++K E N TG+ K M + + A L K + C TG
Sbjct: 68 TPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTK---ALELGVKTVACASTG 124
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
Length = 331
Score = 28.6 bits (65), Expect = 5.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 15 PTPIYYCKNISNILKGSKIFLKREDLNFTG 44
PTP+ +S L G I++KR+DL TG
Sbjct: 15 PTPLEPLPRLSAAL-GPDIYIKRDDL--TG 41
Score = 28.6 bits (65), Expect = 5.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 198 PTPIYYCKNISNILKGSKIFLKREDLNFTG 227
PTP+ +S L G I++KR+DL TG
Sbjct: 15 PTPLEPLPRLSAAL-GPDIYIKRDDL--TG 41
>gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase,
classical (c) SDR. D-mannonate oxidoreductase catalyzes
the NAD-dependent interconversion of D-mannonate and
D-fructuronate. This subgroup includes Bacillus
subtitils UxuB/YjmF, a putative D-mannonate
oxidoreductase; the B. subtilis UxuB gene is part of a
putative ten-gene operon (the Yjm operon) involved in
hexuronate catabolism. Escherichia coli UxuB does not
belong to this subgroup. This subgroup has a canonical
active site tetrad and a typical Gly-rich NAD-binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 271
Score = 28.6 bits (64), Expect = 6.2
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 91 IIYIGENDYKRQNINVKKIKLLGGTVYLV-----QYGNLKEAMNEAIKDWSNNILNSHYL 145
+ +G N K + K+I LGG + +L+ A E + + L
Sbjct: 32 VAALGRNQEKGDKV-AKEITALGGRAIALAADVLDRASLERAREEIVAQFGT----VDIL 86
Query: 146 IGTASGPHPYPTIVRDF 162
I A G HP T +
Sbjct: 87 INGAGGNHPDATTDPEH 103
Score = 28.6 bits (64), Expect = 6.2
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 274 IIYIGENDYKRQNINVKKIKLLGGTVYLV-----QYGNLKEAMNEAIKDWSNNILNSHYL 328
+ +G N K + K+I LGG + +L+ A E + + L
Sbjct: 32 VAALGRNQEKGDKV-AKEITALGGRAIALAADVLDRASLERAREEIVAQFGT----VDIL 86
Query: 329 IGTASGPHPYPTIVRDF 345
I A G HP T +
Sbjct: 87 INGAGGNHPDATTDPEH 103
>gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit;
Provisional.
Length = 1054
Score = 28.8 bits (65), Expect = 6.4
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 19 YYCKNISNILKGSKIF---LKREDLNFTGAHKMN---NSIAQSLLAKFLKKKR--IICET 70
YY I N L +IF + D F+G H + +S ++ L+KF+KK+ + C++
Sbjct: 911 YYLDQIKNPL--LRIFEGVMDNPDSLFSGEHTRHITISSSSKGGLSKFVKKQLQCLGCKS 968
Query: 71 GAGMHGVSTATSC--CLLNLESIIYI 94
+ C C N E IY
Sbjct: 969 -----VIKEGALCDNCNQNKEPSIYG 989
Score = 28.8 bits (65), Expect = 6.4
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 202 YYCKNISNILKGSKIF---LKREDLNFTGAHKMN---NSIAQSLLAKFLKKKR--IICET 253
YY I N L +IF + D F+G H + +S ++ L+KF+KK+ + C++
Sbjct: 911 YYLDQIKNPL--LRIFEGVMDNPDSLFSGEHTRHITISSSSKGGLSKFVKKQLQCLGCKS 968
Query: 254 GAGMHGVSTATSC--CLLNLESIIYI 277
+ C C N E IY
Sbjct: 969 -----VIKEGALCDNCNQNKEPSIYG 989
>gnl|CDD|223142 COG0064, GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit
(PET112 homolog) [Translation, ribosomal structure and
biogenesis].
Length = 483
Score = 27.9 bits (63), Expect = 10.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 160 RDFQSIIGYEIHQQLN 175
+F+ +IG E+H QLN
Sbjct: 4 MNFEVVIGLEVHVQLN 19
Score = 27.9 bits (63), Expect = 10.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 343 RDFQSIIGYEIHQQLN 358
+F+ +IG E+H QLN
Sbjct: 4 MNFEVVIGLEVHVQLN 19
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0865 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,994,172
Number of extensions: 2053012
Number of successful extensions: 1845
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1753
Number of HSP's successfully gapped: 95
Length of query: 410
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 311
Effective length of database: 6,546,556
Effective search space: 2035978916
Effective search space used: 2035978916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.6 bits)