RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11239
(410 letters)
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural
genomics/proteomics initiative, structural genomics,
lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP:
c.79.1.1 PDB: 1wdw_B*
Length = 388
Score = 316 bits (811), Expect = e-105
Identities = 116/228 (50%), Positives = 152/228 (66%), Gaps = 17/228 (7%)
Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
N+Y K + GRPTP+YY K ++ + G+KI+LKREDL GAHK NN+I
Sbjct: 39 LNYYLKTWA-----------GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAI 87
Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
Q+LLAKF+ K R+I ETGAG HGV+TA + LL ++ IY+G D +RQ +NV ++KLL
Sbjct: 88 GQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLL 147
Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
G V V G+ LK+A+NEA++DW +HYLIG+ GPHPYPTIVRDFQS+IG E
Sbjct: 148 GANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREA 207
Query: 354 HQQLNFNFYNKK--YILACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
Q+ + I+ACVGGGSNA+GIFY F+N KLV +E+GG
Sbjct: 208 KAQI-LEAEGQLPDVIVACVGGGSNAMGIFYPFVNDKKVKLVGVEAGG 254
Score = 296 bits (760), Expect = 9e-98
Identities = 102/188 (54%), Positives = 133/188 (70%), Gaps = 5/188 (2%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPTP+YY K ++ + G+KI+LKREDL GAHK NN+I Q+LLAKF+ K R+I ETGA
Sbjct: 48 GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGA 107
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV+TA + LL ++ IY+G D +RQ +NV ++KLLG V V G+ LK+A+NE
Sbjct: 108 GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINE 167
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACV 188
A++DW +HYLIG+ GPHPYPTIVRDFQS+IG E Q+ + I+ACV
Sbjct: 168 ALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQI-LEAEGQLPDVIVACV 226
Query: 189 GGGSNALG 196
GGGSNA+G
Sbjct: 227 GGGSNAMG 234
>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan
biosynthesis, structural genomics; 2.20A {Mycobacterium
tuberculosis} PDB: 2o2j_A
Length = 422
Score = 316 bits (813), Expect = e-105
Identities = 106/228 (46%), Positives = 147/228 (64%), Gaps = 17/228 (7%)
Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
+ Y GRP+P+Y +S ++IFLKREDLN TG+HK+NN +
Sbjct: 70 LDRLQANYA-----------GRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVL 118
Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
Q+LLA+ + K R+I ETGAG HGV+TAT+C LL L+ +IY+G D RQ +NV +++LL
Sbjct: 119 GQALLARRMGKTRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLL 178
Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
G V VQ G+ LK+A+NEA +DW N N++Y GTA+GPHP+PT+VRDFQ IIG E
Sbjct: 179 GAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEA 238
Query: 354 HQQLNFNFYNKK--YILACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
Q+ + ++ACVGGGSNA+GIF+ F++ +LV E+ G
Sbjct: 239 RVQI-QGQAGRLPDAVVACVGGGSNAIGIFHAFLDDPGVRLVGFEAAG 285
Score = 297 bits (762), Expect = 1e-97
Identities = 98/188 (52%), Positives = 133/188 (70%), Gaps = 5/188 (2%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRP+P+Y +S ++IFLKREDLN TG+HK+NN + Q+LLA+ + K R+I ETGA
Sbjct: 79 GRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAETGA 138
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV+TAT+C LL L+ +IY+G D RQ +NV +++LLG V VQ G+ LK+A+NE
Sbjct: 139 GQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAINE 198
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACV 188
A +DW N N++Y GTA+GPHP+PT+VRDFQ IIG E Q+ + ++ACV
Sbjct: 199 AFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQI-QGQAGRLPDAVVACV 257
Query: 189 GGGSNALG 196
GGGSNA+G
Sbjct: 258 GGGSNAIG 265
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB:
1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B*
2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B*
1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...
Length = 396
Score = 315 bits (810), Expect = e-105
Identities = 102/228 (44%), Positives = 144/228 (63%), Gaps = 18/228 (7%)
Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
F K Y GRPT + C+NI+ + ++LKREDL GAHK N +
Sbjct: 44 FADLLKNYA-----------GRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVL 91
Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
Q+LLAK + K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+
Sbjct: 92 GQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 151
Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
G V V G+ LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E
Sbjct: 152 GAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEET 211
Query: 354 HQQLNFNFYNKK--YILACVGGGSNALGIFYTFIN-SNFKLVAIESGG 398
Q+ + + ++ACVGGGSNA+G+F FIN ++ L+ +E GG
Sbjct: 212 KAQI-LDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGG 258
Score = 295 bits (758), Expect = 2e-97
Identities = 91/188 (48%), Positives = 128/188 (68%), Gaps = 6/188 (3%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPT + C+NI+ + ++LKREDL GAHK N + Q+LLAK + K II ETGA
Sbjct: 53 GRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGA 111
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G+ LK+A NE
Sbjct: 112 GQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNE 171
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACV 188
A++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q+ + + ++ACV
Sbjct: 172 ALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQI-LDKEGRLPDAVIACV 230
Query: 189 GGGSNALG 196
GGGSNA+G
Sbjct: 231 GGGSNAIG 238
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus}
Length = 418
Score = 313 bits (804), Expect = e-104
Identities = 103/230 (44%), Positives = 149/230 (64%), Gaps = 19/230 (8%)
Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
+ Y +++ GRPTP+Y+ K +S G+++FLKREDL TGAHK+NN++
Sbjct: 66 LDHYLRQFA-----------GRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTL 114
Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
Q+LLA+ + K+R+I ETGAG HGVS AT L LE ++Y+GE D +RQ +NV ++KLL
Sbjct: 115 GQALLARRMGKRRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLL 174
Query: 296 GGTVYLVQYGN--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
G V V G+ LK+A NEAI+DW N+ + Y++G+ GPHPYP +VRDFQS+IG E+
Sbjct: 175 GAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEV 234
Query: 354 HQQLNFNFYNKK--YILACVGGGSNALGIFYTFIN---SNFKLVAIESGG 398
+Q + + ++A VGGGSNA+G+F F KL+ +E+ G
Sbjct: 235 KRQS-LELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAG 283
Score = 296 bits (761), Expect = 1e-97
Identities = 96/188 (51%), Positives = 134/188 (71%), Gaps = 5/188 (2%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPTP+Y+ K +S G+++FLKREDL TGAHK+NN++ Q+LLA+ + K+R+I ETGA
Sbjct: 75 GRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQALLARRMGKRRVIAETGA 134
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN--LKEAMNE 130
G HGVS AT L LE ++Y+GE D +RQ +NV ++KLLG V V G+ LK+A NE
Sbjct: 135 GQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNE 194
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACV 188
AI+DW N+ + Y++G+ GPHPYP +VRDFQS+IG E+ +Q + + ++A V
Sbjct: 195 AIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQS-LELFGRLPDALIAAV 253
Query: 189 GGGSNALG 196
GGGSNA+G
Sbjct: 254 GGGSNAIG 261
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 97.6 bits (243), Expect = 6e-23
Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 17/215 (7%)
Query: 195 LGRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRII 250
PTPI +S L G ++ KRED N A N + L A ++
Sbjct: 12 TFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLV 71
Query: 251 CETGAGM-HGVSTATSCCLLNLESIIYIGE-----NDYKRQNINVKKIKLLGGTVYLVQY 304
G A L ++ ++ + + N++ ++LG V LV
Sbjct: 72 SIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPD 131
Query: 305 G--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFY 362
G E + Y I HP + E+ Q +
Sbjct: 132 GFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGL---GFVGFAEEVRAQEAELGF 188
Query: 363 NKKYILACVGGGSNALGIFYTFI--NSNFKLVAIE 395
Y++ C GS G+ F +++ ++
Sbjct: 189 KFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVD 223
Score = 92.6 bits (230), Expect = 4e-21
Identities = 38/197 (19%), Positives = 60/197 (30%), Gaps = 15/197 (7%)
Query: 13 GRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRIIC 68
PTPI +S L G ++ KRED N A N + L A ++
Sbjct: 13 FGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVS 72
Query: 69 ETGAGM-HGVSTATSCCLLNLESIIYIGE-----NDYKRQNINVKKIKLLGGTVYLVQYG 122
G A L ++ ++ + + N++ ++LG V LV G
Sbjct: 73 IGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG 132
Query: 123 --NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 180
E + Y I HP + E+ Q +
Sbjct: 133 FDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGL---GFVGFAEEVRAQEAELGFK 189
Query: 181 KKYILACVGGGSNALGR 197
Y++ C GS G
Sbjct: 190 FDYVVVCSVTGSTQAGM 206
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open
twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis
saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Length = 341
Score = 72.4 bits (177), Expect = 3e-14
Identities = 33/214 (15%), Positives = 62/214 (28%), Gaps = 22/214 (10%)
Query: 195 LGRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRII 250
P+PI +S L ++ KRED N A N + ++
Sbjct: 12 TFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLV 71
Query: 251 CETGA-GMHGVSTATSCCLLNLESIIYI--------GENDYKRQNINVKKIKLLGGTVYL 301
G A L + ++ E D + N++ +++G V +
Sbjct: 72 SIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRV 131
Query: 302 V--QYGNLKEAMNEAIKDWSNNILNSHYLI--GTASGPHPYPTIVRDFQSIIGYEIHQQL 357
+ + + + Y I G + + V +I E+ +
Sbjct: 132 IEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGI 191
Query: 358 NFNFYNKKYILACVGGGSNALGIFYTFINSNFKL 391
F+ I+ C GS GI +
Sbjct: 192 KFD-----KIVVCCVTGSTTAGILAGMAQYGRQD 220
Score = 70.5 bits (172), Expect = 1e-13
Identities = 39/268 (14%), Positives = 76/268 (28%), Gaps = 23/268 (8%)
Query: 13 GRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRIIC 68
P+PI +S L ++ KRED N A N + ++
Sbjct: 13 FGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVS 72
Query: 69 ETGA-GMHGVSTATSCCLLNLESIIYI--------GENDYKRQNINVKKIKLLGGTVYLV 119
G A L + ++ E D + N++ +++G V ++
Sbjct: 73 IGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVI 132
Query: 120 --QYGNLKEAMNEAIKDWSNNILNSHYLI--GTASGPHPYPTIVRDFQSIIGYEIHQQLN 175
+ + + Y I G + + V +I E+ +
Sbjct: 133 EDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIK 192
Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
F+ I+ C GS G + +++ F + T NN+
Sbjct: 193 FD-----KIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQT-LRIANNTA 246
Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTA 263
+ K + +GV
Sbjct: 247 KLIGVEHEFKDFTLDTRFAYPCYGVPNE 274
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 70.6 bits (173), Expect = 2e-13
Identities = 37/206 (17%), Positives = 72/206 (34%), Gaps = 30/206 (14%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNF--------TGAHKMNNSIAQSL--------- 239
RPTP+ +++N+ KI +K E F GA+ + + +
Sbjct: 43 RPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSF 102
Query: 240 --LAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLL 295
L + +K T G HG A + L ++IY+ + + I L
Sbjct: 103 EHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDA-----ILNL 157
Query: 296 GGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPY-PTIVRDFQSIIGYEIH 354
G + N + + ++ + + TA + PT + + + E
Sbjct: 158 GAECIVTD-MNYDDTVRLTMQHAQQH--GWEVVQDTAWEGYTKIPTWIMQGYATLADEAV 214
Query: 355 QQLNFNFYNKKYILACVGGGSNALGI 380
+Q+ ++L G G+ A G+
Sbjct: 215 EQMREMGVTPTHVLLQAGVGAMAGGV 240
Score = 69.0 bits (169), Expect = 6e-13
Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 30/205 (14%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNF--------TGAHKMNNSIAQSL--------- 56
RPTP+ +++N+ KI +K E F GA+ + + +
Sbjct: 43 RPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSF 102
Query: 57 --LAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLL 112
L + +K T G HG A + L ++IY+ + + I L
Sbjct: 103 EHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDA-----ILNL 157
Query: 113 GGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPY-PTIVRDFQSIIGYEIH 171
G + N + + ++ + + TA + PT + + + E
Sbjct: 158 GAECIVTD-MNYDDTVRLTMQHAQQH--GWEVVQDTAWEGYTKIPTWIMQGYATLADEAV 214
Query: 172 QQLNFNFYNKKYILACVGGGSNALG 196
+Q+ ++L G G+ A G
Sbjct: 215 EQMREMGVTPTHVLLQAGVGAMAGG 239
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 66.9 bits (164), Expect = 2e-12
Identities = 39/197 (19%), Positives = 65/197 (32%), Gaps = 46/197 (23%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGA-------HKMNNSIAQSLLAKFLKKKRIIC 251
TPI +S + G+ ++LK + +G+ H Q +C
Sbjct: 47 TPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ-------GCAHFVC 98
Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLK 308
+ AG G++ A + L + + I + ++++K G T G L
Sbjct: 99 SS-AGNAGMAAAYAARQLGVPATIVVPGTTPALT-----IERLKNEGATC--KVVGELLD 150
Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 363
EA A L G P+ P I + + I E+ + L
Sbjct: 151 EAFELAKA-----------LAKNNPGWVYIPPFDDPLIW-EGHASIVKELKETLWEKPG- 197
Query: 364 KKYILACVGGGSNALGI 380
I VGGG G+
Sbjct: 198 --AIALSVGGGGLLCGV 212
Score = 66.1 bits (162), Expect = 3e-12
Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 46/191 (24%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGA-------HKMNNSIAQSLLAKFLKKKRIIC 68
TPI +S + G+ ++LK + +G+ H Q +C
Sbjct: 47 TPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ-------GCAHFVC 98
Query: 69 ETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLK 125
+ AG G++ A + L + + I + ++++K G T G L
Sbjct: 99 SS-AGNAGMAAAYAARQLGVPATIVVPGTTPALT-----IERLKNEGATC--KVVGELLD 150
Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 180
EA A L G P+ P I + + I E+ + L
Sbjct: 151 EAFELAKA-----------LAKNNPGWVYIPPFDDPLIW-EGHASIVKELKETLWEKPG- 197
Query: 181 KKYILACVGGG 191
I VGGG
Sbjct: 198 --AIALSVGGG 206
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 64.9 bits (159), Expect = 1e-11
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 33/192 (17%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
+P+ + +S+ L G ++KRED + K+ N ++ L++ K +I +
Sbjct: 59 IESPLELAEKLSDRL-GVNFYIKREDKQRVFSFKLRGAYNMMSN--LSREELDKGVITAS 115
Query: 254 GAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 310
AG H GV A + LN + I + I + ++ LGG V V YG EA
Sbjct: 116 -AGNHAQGV--ALAGQRLNCVAKIVMPTTT---PQIKIDAVRALGGDV--VLYGKTFDEA 167
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
A++ + L I P+ P +++ Q IG EI++QL + +
Sbjct: 168 QTHALELSEKDGLK---YI------PPFDDPGVIKG-QGTIGTEINRQLK----DIHAVF 213
Query: 369 ACVGGGSNALGI 380
VGGG G+
Sbjct: 214 IPVGGGGLIAGV 225
Score = 64.5 bits (158), Expect = 1e-11
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
+P+ + +S+ L G ++KRED + K+ N ++ L++ K +I +
Sbjct: 59 IESPLELAEKLSDRL-GVNFYIKREDKQRVFSFKLRGAYNMMSN--LSREELDKGVITAS 115
Query: 71 GAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 127
AG H GV A + LN + I + I + ++ LGG V V YG EA
Sbjct: 116 -AGNHAQGV--ALAGQRLNCVAKIVMPTTT---PQIKIDAVRALGGDV--VLYGKTFDEA 167
Query: 128 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
A++ + L I P+ P +++ Q IG EI++QL + +
Sbjct: 168 QTHALELSEKDGLK---YI------PPFDDPGVIKG-QGTIGTEINRQLK----DIHAVF 213
Query: 186 ACVGGG 191
VGGG
Sbjct: 214 IPVGGG 219
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 62.2 bits (152), Expect = 6e-11
Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 46/191 (24%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGA-------HKMNNSIAQSLLAKFLKKKRIIC 68
TP+ +S + G +FLK E++ +G+ H + + ++C
Sbjct: 8 TPLLESWALSQVA-GMPVFLKCENVQPSGSFKIRGIGHFCQEMAKK-------GCRHLVC 59
Query: 69 ETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLK 125
+ G G++ A + L + + I + E+ V++++ G V G
Sbjct: 60 SS-GGNAGIAAAYAARKLGIPATIVLPESTSLQV-----VQRLQGEGAEV--QLTGKVWD 111
Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 180
EA A + + G P+ P I + + E+ L
Sbjct: 112 EANLRAQE------------LAKRDGWENVPPFDHPLIW-KGHASLVQELKAVLRTPPG- 157
Query: 181 KKYILACVGGG 191
+LA GGG
Sbjct: 158 -ALVLAVGGGG 167
Score = 62.2 bits (152), Expect = 6e-11
Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 46/191 (24%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGA-------HKMNNSIAQSLLAKFLKKKRIIC 251
TP+ +S + G +FLK E++ +G+ H + + ++C
Sbjct: 8 TPLLESWALSQVA-GMPVFLKCENVQPSGSFKIRGIGHFCQEMAKK-------GCRHLVC 59
Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLK 308
+ G G++ A + L + + I + E+ V++++ G V G
Sbjct: 60 SS-GGNAGIAAAYAARKLGIPATIVLPESTSLQV-----VQRLQGEGAEV--QLTGKVWD 111
Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 363
EA A + + G P+ P I + + E+ L
Sbjct: 112 EANLRAQE------------LAKRDGWENVPPFDHPLIW-KGHASLVQELKAVLRTPPG- 157
Query: 364 KKYILACVGGG 374
+LA GGG
Sbjct: 158 -ALVLAVGGGG 167
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 62.3 bits (152), Expect = 6e-11
Identities = 36/196 (18%), Positives = 63/196 (32%), Gaps = 36/196 (18%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETGA 255
TP+ N+S G I LK E LN TG+ K M ++A + A ++ ++C +
Sbjct: 39 TPLIAATNLSKQT-GCTIHLKVEGLNPTGSFKDRGM--TMAVT-DALAHGQRAVLCAS-T 93
Query: 256 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 315
G S A + + I + + + + G + + GN + + A
Sbjct: 94 GNTSASAAAYAARAGITCAVLIPQGKIAMGKL--AQAVMHGAKIIQID-GNFDDCLELAR 150
Query: 316 K-----DW--SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
K N +N + G + +EI L
Sbjct: 151 KMAADFPTISLVNSVNPVRIEGQKT---------------AAFEIVDVLGTAP---DVHA 192
Query: 369 ACVGGGSNALGIFYTF 384
VG N + +
Sbjct: 193 LPVGNAGNITAYWKGY 208
Score = 60.4 bits (147), Expect = 3e-10
Identities = 36/191 (18%), Positives = 61/191 (31%), Gaps = 36/191 (18%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETGA 72
TP+ N+S G I LK E LN TG+ K M ++A + A ++ ++C +
Sbjct: 39 TPLIAATNLSKQT-GCTIHLKVEGLNPTGSFKDRGM--TMAVT-DALAHGQRAVLCAS-T 93
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
G S A + + I + + + + G + + GN + + A
Sbjct: 94 GNTSASAAAYAARAGITCAVLIPQGKIAMGKL--AQAVMHGAKIIQID-GNFDDCLELAR 150
Query: 133 K-----DW--SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
K N +N + G + +EI L
Sbjct: 151 KMAADFPTISLVNSVNPVRIEGQKT---------------AAFEIVDVLGTAP---DVHA 192
Query: 186 ACVGGGSNALG 196
VG N
Sbjct: 193 LPVGNAGNITA 203
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 59.6 bits (145), Expect = 8e-10
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 33/192 (17%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 253
+ TP+ + +S+ L + I +KRED + K+ +A L + K +I +
Sbjct: 30 QVTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAG--LTEEQKAHGVITAS 86
Query: 254 GAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 310
AG H GV A S L ++++I + I V ++ GG V + +G N EA
Sbjct: 87 -AGNHAQGV--AFSSARLGVKALIVMPTATAD---IKVDAVRGFGGEV--LLHGANFDEA 138
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
+AI+ + P+ P ++ Q + E+ QQ + +
Sbjct: 139 KAKAIELSQQQGFT---WV------PPFDHPMVIAG-QGTLALELLQQDA----HLDRVF 184
Query: 369 ACVGGGSNALGI 380
VGGG A G+
Sbjct: 185 VPVGGGGLAAGV 196
Score = 58.4 bits (142), Expect = 2e-09
Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 33/186 (17%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICET 70
+ TP+ + +S+ L + I +KRED + K+ +A L + K +I +
Sbjct: 30 QVTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAG--LTEEQKAHGVITAS 86
Query: 71 GAGMH--GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 127
AG H GV A S L ++++I + I V ++ GG V + +G N EA
Sbjct: 87 -AGNHAQGV--AFSSARLGVKALIVMPTATAD---IKVDAVRGFGGEV--LLHGANFDEA 138
Query: 128 MNEAIKDWSNNILNSHYLIGTASGPHPY--PTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 185
+AI+ + P+ P ++ Q + E+ QQ + +
Sbjct: 139 KAKAIELSQQQGFT---WV------PPFDHPMVIAG-QGTLALELLQQDA----HLDRVF 184
Query: 186 ACVGGG 191
VGGG
Sbjct: 185 VPVGGG 190
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 56.8 bits (138), Expect = 3e-09
Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 43/197 (21%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 253
T + S +IFLK E++ TG+ K+ N ++ L + K+K ++ +
Sbjct: 39 YKTGMPRSNYFSERC-KGEIFLKFENMQRTGSFKIRGAFNKLSS--LTEAEKRKGVVACS 95
Query: 254 GAGMH--GVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLK 308
AG H GV + SC +L ++ + + + K V V V +G N
Sbjct: 96 -AGNHAQGV--SLSCAMLGIDGKVVMPKGAPKSK-----VAATCDYSAEV--VLHGDNFN 145
Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 363
+ + + + I G PY P ++ Q IG EI + L +
Sbjct: 146 DTIAKVSE------------IVETEGRIFIPPYDDPKVIAG-QGTIGLEIMEDLY----D 188
Query: 364 KKYILACVGGGSNALGI 380
++ +GGG GI
Sbjct: 189 VDNVIVPIGGGGLIAGI 205
Score = 55.3 bits (134), Expect = 1e-08
Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 43/196 (21%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 70
T + S +IFLK E++ TG+ K+ N ++ L + K+K ++ +
Sbjct: 39 YKTGMPRSNYFSERC-KGEIFLKFENMQRTGSFKIRGAFNKLSS--LTEAEKRKGVVACS 95
Query: 71 GAGMH--GVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLK 125
AG H GV + SC +L ++ + + + K V V V +G N
Sbjct: 96 -AGNHAQGV--SLSCAMLGIDGKVVMPKGAPKSK-----VAATCDYSAEV--VLHGDNFN 145
Query: 126 EAMNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYN 180
+ + + + I G PY P ++ Q IG EI + L +
Sbjct: 146 DTIAKVSE------------IVETEGRIFIPPYDDPKVIAG-QGTIGLEIMEDLY----D 188
Query: 181 KKYILACVGGGSNALG 196
++ +GGG G
Sbjct: 189 VDNVIVPIGGGGLIAG 204
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 55.4 bits (134), Expect = 1e-08
Identities = 39/199 (19%), Positives = 70/199 (35%), Gaps = 41/199 (20%)
Query: 199 TPIYYCKNISNILK-GSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETG 254
TP+ K K G +++ K E LN TG+ K M ++A S A + + C +
Sbjct: 29 TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGM--TLAVS-KAVEGGAQAVACAS- 84
Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIK---LLGGTVYLVQYGNLKEAM 311
G S A + +I+ + + + K+ + G + V+ GN +A+
Sbjct: 85 TGNTAASAAAYAARAGILAIVVLPAG-----YVALGKVAQSLVHGARIVQVE-GNFDDAL 138
Query: 312 NEAIK-----DWSN-NILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK 365
K + N +N H L G + + +E+ +L
Sbjct: 139 RLTQKLTEAFPVALVNSVNPHRLEGQKT---------------LAFEVVDELGDAP---H 180
Query: 366 YILACVGGGSNALGIFYTF 384
Y VG N + +
Sbjct: 181 YHALPVGNAGNITAHWMGY 199
Score = 53.4 bits (129), Expect = 5e-08
Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 41/194 (21%)
Query: 16 TPIYYCKNISNILK-GSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETG 71
TP+ K K G +++ K E LN TG+ K M ++A S A + + C +
Sbjct: 29 TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGM--TLAVS-KAVEGGAQAVACAS- 84
Query: 72 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIK---LLGGTVYLVQYGNLKEAM 128
G S A + +I+ + + + K+ + G + V+ GN +A+
Sbjct: 85 TGNTAASAAAYAARAGILAIVVLPAG-----YVALGKVAQSLVHGARIVQVE-GNFDDAL 138
Query: 129 NEAIK-----DWSN-NILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK 182
K + N +N H L G + + +E+ +L
Sbjct: 139 RLTQKLTEAFPVALVNSVNPHRLEGQKT---------------LAFEVVDELGDAP---H 180
Query: 183 YILACVGGGSNALG 196
Y VG N
Sbjct: 181 YHALPVGNAGNITA 194
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 54.8 bits (132), Expect = 2e-08
Identities = 31/223 (13%), Positives = 68/223 (30%), Gaps = 47/223 (21%)
Query: 199 TPIYYCKNISN-ILKGSKIFLKREDLNFTGAHK-----MNNSIAQSLLAKFLKKKRIICE 252
+ +++ + L + +++K ++ TG+ K + S L + C
Sbjct: 131 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA 190
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKK---IKLLGGTVYLVQYGNLKE 309
+ G + + C + SI+++ N I++ + G V + +
Sbjct: 191 S-TGDTSAALSAYCASAGIPSIVFLPAN-----KISMAQLVQPIANGAFVLSID-TDFDG 243
Query: 310 AMNEAIK-----DWS-NNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 363
M + N LNS L G + EI QQ ++
Sbjct: 244 CMKLIREITAELPIYLANSLNSLRLEGQKT---------------AAIEILQQFDWQV-- 286
Query: 364 KKYILACVGGGSNALGI---FYTFINSNF-----KLVAIESGG 398
+++ G N F ++V ++
Sbjct: 287 PDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAAN 329
Score = 52.9 bits (127), Expect = 9e-08
Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 39/196 (19%)
Query: 16 TPIYYCKNISN-ILKGSKIFLKREDLNFTGAHK-----MNNSIAQSLLAKFLKKKRIICE 69
+ +++ + L + +++K ++ TG+ K + S L + C
Sbjct: 131 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA 190
Query: 70 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKK---IKLLGGTVYLVQYGNLKE 126
+ G + + C + SI+++ N I++ + G V + +
Sbjct: 191 S-TGDTSAALSAYCASAGIPSIVFLPAN-----KISMAQLVQPIANGAFVLSID-TDFDG 243
Query: 127 AMNEAIK-----DWS-NNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 180
M + N LNS L G + EI QQ ++
Sbjct: 244 CMKLIREITAELPIYLANSLNSLRLEGQKT---------------AAIEILQQFDWQV-- 286
Query: 181 KKYILACVGGGSNALG 196
+++ G N
Sbjct: 287 PDWVIVPGGNLGNIYA 302
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 53.4 bits (129), Expect = 4e-08
Identities = 43/193 (22%), Positives = 74/193 (38%), Gaps = 29/193 (15%)
Query: 199 TPIYYCKNISNIL-KGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETG 254
TP+ N++ + KI+LK E LN TG+ K M ++A S A K+ +IC +
Sbjct: 31 TPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGM--TLAISK-AVEAGKRAVICAS- 86
Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIK---LLGGTVYLVQYGNLKEAM 311
G S A L + + + + + + K+ + G V +Q G +A+
Sbjct: 87 TGNTSASAAAYAARAGLRAYVLLPKG-----AVAIGKLSQAMIYGAKVLAIQ-GTFDDAL 140
Query: 312 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACV 371
N K + ++ + + +PY + Q +EI L Y V
Sbjct: 141 NIVRK------IGENFPVEIVNSVNPYRI---EGQKTAAFEICDTLGEAP---DYHFIPV 188
Query: 372 GGGSNALGIFYTF 384
G N + F
Sbjct: 189 GNAGNITAYWKGF 201
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase;
HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1
PDB: 1j0b_A*
Length = 325
Score = 51.2 bits (122), Expect = 2e-07
Identities = 40/200 (20%), Positives = 68/200 (34%), Gaps = 17/200 (8%)
Query: 198 PTPIYYCKNISNILKGSKIFLKREDLN---FTG--AHKMNNSIAQSLLAKFLKKKRIICE 252
TPI Y NIS + G+ +++KR+DL G K+ + +L I
Sbjct: 21 ETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGA--DVVITVG 77
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ-YGNLKEAM 311
H T + L L++I+ + + + N + KI + VY + L +
Sbjct: 78 AVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYA 137
Query: 312 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACV 371
E ++ + + + P VR EI Q F I+
Sbjct: 138 EEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVG-----EIATQSEVKF---DSIVVAA 189
Query: 372 GGGSNALGIFYTFINSNFKL 391
G G G+ N +
Sbjct: 190 GSGGTLAGLSLGLSILNEDI 209
Score = 50.0 bits (119), Expect = 6e-07
Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 17/188 (9%)
Query: 15 PTPIYYCKNISNILKGSKIFLKREDLN---FTG--AHKMNNSIAQSLLAKFLKKKRIICE 69
TPI Y NIS + G+ +++KR+DL G K+ + +L I
Sbjct: 21 ETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGA--DVVITVG 77
Query: 70 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ-YGNLKEAM 128
H T + L L++I+ + + + N + KI + VY + L +
Sbjct: 78 AVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYA 137
Query: 129 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACV 188
E ++ + + + P VR EI Q F I+
Sbjct: 138 EEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVG-----EIATQSEVKF---DSIVVAA 189
Query: 189 GGGSNALG 196
G G G
Sbjct: 190 GSGGTLAG 197
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or
tryptophan synthase BET like family, PLP dependent
enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium}
PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A*
4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Length = 342
Score = 50.5 bits (120), Expect = 5e-07
Identities = 37/209 (17%), Positives = 71/209 (33%), Gaps = 18/209 (8%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLN--FTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
PTP+ Y +S+ L G +I++KR+D+ G +K+ + L+A L++ T
Sbjct: 31 APTPLEYLPRLSDYL-GREIYIKRDDVTPIAMGGNKLR--KLEFLVADALREGADTLITA 87
Query: 255 AGM---HGVSTATSCCLLNLESIIYI-----GENDYKRQNINVKKIKLLGGTVYLVQYGN 306
+ H TA L L + + + N N + L + +
Sbjct: 88 GAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALT 147
Query: 307 LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKY 366
+A + + Y+I G EI QQ
Sbjct: 148 DPDAQLQTLATRIEAQGFRPYVI-PVGGSSALGA---MGYVESALEIAQQCEEVVGLSSV 203
Query: 367 ILACVGGGSNALGIFYT-FINSNFKLVAI 394
++A G++A + + +L+ +
Sbjct: 204 VVASGSAGTHAGLAVGLEHLMPDVELIGV 232
Score = 49.7 bits (118), Expect = 7e-07
Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 17/189 (8%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLN--FTGAHKMNNSIAQSLLAKFLKKKRIICETG 71
PTP+ Y +S+ L G +I++KR+D+ G +K+ + L+A L++ T
Sbjct: 31 APTPLEYLPRLSDYL-GREIYIKRDDVTPIAMGGNKLR--KLEFLVADALREGADTLITA 87
Query: 72 AGM---HGVSTATSCCLLNLESIIYI-----GENDYKRQNINVKKIKLLGGTVYLVQYGN 123
+ H TA L L + + + N N + L + +
Sbjct: 88 GAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALT 147
Query: 124 LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKY 183
+A + + Y+I G EI QQ
Sbjct: 148 DPDAQLQTLATRIEAQGFRPYVI-PVGGSSALGA---MGYVESALEIAQQCEEVVGLSSV 203
Query: 184 ILACVGGGS 192
++A G+
Sbjct: 204 VVASGSAGT 212
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 49.8 bits (120), Expect = 6e-07
Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 38/189 (20%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 70
TP+ + + +L G ++ LK E L TG+ K + L+ + +
Sbjct: 19 HRTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSKALA------LENPKGLLAV 71
Query: 71 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 127
+G H A + +L +++++ + E+ YK+ + G V V G K
Sbjct: 72 SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKAC-----ARAYGAEV--VDRGVTAKNR 124
Query: 128 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 182
A + +G HP+ P ++ Q G E+ Q
Sbjct: 125 EEVARA------------LQEETGYALIHPFDDPLVIAG-QGTAGLELLAQAGRMGVFPG 171
Query: 183 YILACVGGG 191
+LA VGGG
Sbjct: 172 AVLAPVGGG 180
Score = 49.8 bits (120), Expect = 6e-07
Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 38/189 (20%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 253
TP+ + + +L G ++ LK E L TG+ K + L+ + +
Sbjct: 19 HRTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSKALA------LENPKGLLAV 71
Query: 254 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 310
+G H A + +L +++++ + E+ YK+ + G V V G K
Sbjct: 72 SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKAC-----ARAYGAEV--VDRGVTAKNR 124
Query: 311 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 365
A + +G HP+ P ++ Q G E+ Q
Sbjct: 125 EEVARA------------LQEETGYALIHPFDDPLVIAG-QGTAGLELLAQAGRMGVFPG 171
Query: 366 YILACVGGG 374
+LA VGGG
Sbjct: 172 AVLAPVGGG 180
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 49.0 bits (117), Expect = 1e-06
Identities = 26/232 (11%), Positives = 61/232 (26%), Gaps = 71/232 (30%)
Query: 198 PTPIYYCKNISNIL-------KGSKIFLKREDLNFT--------GAHKM----------- 231
+ + + L ++ LK++ G +++
Sbjct: 78 ESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEA 137
Query: 232 --------NNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGEN--D 281
+ + +F + I + G G+S + + +++ +
Sbjct: 138 GLLTLDDDYSKLLSPEFKQFFSQYSIAVGS-TGNLGLSIGIMSARIGFKVTVHMSADARA 196
Query: 282 YKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI 341
+K K++ G TV + + A+ E K A+ P
Sbjct: 197 WK-----KAKLRSHGVTVVEYE-QDYGVAVEEGRK---------------AAQSDPNCFF 235
Query: 342 VRDF--------QSIIGYEIHQQLNFNFYNKK-----YILACVGGGSNALGI 380
+ D S+ G + Q ++ G G G+
Sbjct: 236 IDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGV 287
Score = 47.5 bits (113), Expect = 5e-06
Identities = 26/231 (11%), Positives = 60/231 (25%), Gaps = 71/231 (30%)
Query: 15 PTPIYYCKNISNIL-------KGSKIFLKREDLNFT--------GAHKM----------- 48
+ + + L ++ LK++ G +++
Sbjct: 78 ESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEA 137
Query: 49 --------NNSIAQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGEN--D 98
+ + +F + I + G G+S + + +++ +
Sbjct: 138 GLLTLDDDYSKLLSPEFKQFFSQYSIAVGS-TGNLGLSIGIMSARIGFKVTVHMSADARA 196
Query: 99 YKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTI 158
+K K++ G TV + + A+ E K A+ P
Sbjct: 197 WK-----KAKLRSHGVTVVEYE-QDYGVAVEEGRK---------------AAQSDPNCFF 235
Query: 159 VRDF--------QSIIGYEIHQQLNFNFYNKK-----YILACVGGGSNALG 196
+ D S+ G + Q ++ G G G
Sbjct: 236 IDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGG 286
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 46.7 bits (112), Expect = 6e-06
Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 39/189 (20%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 70
TP+ ++ +++F K E+ GA K N+++Q L + +K ++ +
Sbjct: 25 NKTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQ--LNEAQRKAGVLTFS 81
Query: 71 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 127
+G H + A S +L + + I + + + K K GG V + Y +
Sbjct: 82 -SGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAA-----TKGYGGQV--IMYDRYKDDR 133
Query: 128 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 182
A + I G PY P ++ Q E+ +++
Sbjct: 134 EKMAKE------------ISEREGLTIIPPYDHPHVLAG-QGTAAKELFEEVG----PLD 176
Query: 183 YILACVGGG 191
+ C+GGG
Sbjct: 177 ALFVCLGGG 185
Score = 46.7 bits (112), Expect = 6e-06
Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 39/189 (20%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 253
TP+ ++ +++F K E+ GA K N+++Q L + +K ++ +
Sbjct: 25 NKTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQ--LNEAQRKAGVLTFS 81
Query: 254 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 310
+G H + A S +L + + I + + + K K GG V + Y +
Sbjct: 82 -SGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAA-----TKGYGGQV--IMYDRYKDDR 133
Query: 311 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 365
A + I G PY P ++ Q E+ +++
Sbjct: 134 EKMAKE------------ISEREGLTIIPPYDHPHVLAG-QGTAAKELFEEVG----PLD 176
Query: 366 YILACVGGG 374
+ C+GGG
Sbjct: 177 ALFVCLGGG 185
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 44.9 bits (107), Expect = 2e-05
Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 36/189 (19%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 70
TP+ ++ + G +F K E TG+ K+ N++ + +K + +
Sbjct: 24 HLTPVLTSSILNQLT-GRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH 82
Query: 71 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 127
+G HG + + L + + I + + D K+ I+ G ++ V + +
Sbjct: 83 SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLA-----IQAYGASI--VYCEPSDESR 135
Query: 128 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 182
N A + + + HP P ++ Q I E+ Q+
Sbjct: 136 ENVAKR------------VTEETEGIMVHPNQEPAVIAG-QGTIALEVLNQVP----LVD 178
Query: 183 YILACVGGG 191
++ VGGG
Sbjct: 179 ALVVPVGGG 187
Score = 44.9 bits (107), Expect = 2e-05
Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 36/189 (19%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKM---NNSIAQSLLAKFLKKKRIICET 253
TP+ ++ + G +F K E TG+ K+ N++ + +K + +
Sbjct: 24 HLTPVLTSSILNQLT-GRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH 82
Query: 254 GAGMHGVSTATSCCLLNLESIIYIGEN--DYKRQNINVKKIKLLGGTVYLVQYG-NLKEA 310
+G HG + + L + + I + + D K+ I+ G ++ V + +
Sbjct: 83 SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLA-----IQAYGASI--VYCEPSDESR 135
Query: 311 MNEAIKDWSNNILNSHYLIGTASGP---HPY--PTIVRDFQSIIGYEIHQQLNFNFYNKK 365
N A + + + HP P ++ Q I E+ Q+
Sbjct: 136 ENVAKR------------VTEETEGIMVHPNQEPAVIAG-QGTIALEVLNQVP----LVD 178
Query: 366 YILACVGGG 374
++ VGGG
Sbjct: 179 ALVVPVGGG 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 5e-05
Identities = 53/350 (15%), Positives = 104/350 (29%), Gaps = 105/350 (30%)
Query: 21 CK--------NISNILKGSK---IFLKREDLNFTGAHKMNNSIAQSLLAKFLKKK----- 64
CK +++ L + I L + T SLL K+L +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK------SLLLKYLDCRPQDLP 319
Query: 65 RIICET--------GAGMHG---------------VSTATSCCLLNLESIIYIGENDYKR 101
R + T + ++T L LE Y + R
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--RKMFDR 377
Query: 102 QNI---NVK-KIKLLGGTVYLVQYGNLK--EAMNEAIKDWSNNILNSHYLIGTASGPHPY 155
++ + LL + + ++ + M K +++ T S
Sbjct: 378 LSVFPPSAHIPTILLS-----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----I 428
Query: 156 PTIVRDF--QSIIGYEIHQQLNFNFYN--KKYILACVGGGSNALGRPTPI--YYCKNISN 209
P+I + + Y +H+ + + YN K + S+ L P + Y+ +I +
Sbjct: 429 PSIYLELKVKLENEYALHRSI-VDHYNIPKTF-------DSDDLI-PPYLDQYFYSHIGH 479
Query: 210 ILKG----------SKIFLKREDLNF-------TGAHKMNNSIAQSLLAKFLKKKRIICE 252
LK +FL D F + + L + K IC+
Sbjct: 480 HLKNIEHPERMTLFRMVFL---DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL--GGTVY 300
+L+ + I EN + ++ +I L+ ++
Sbjct: 537 N----DPKYERLVNAILDF--LPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 28.3 bits (62), Expect = 5.5
Identities = 35/254 (13%), Positives = 84/254 (33%), Gaps = 70/254 (27%)
Query: 21 CKNISNILKGSKIFLKRE--------------DLNFTGAHKMNNSIAQSLLAKFLKKK-R 65
CK++ ++ K I K E F + Q + + L+ +
Sbjct: 35 CKDVQDMPKS--ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 66 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY-LVQYGNL 124
+ + S + + +YI + D + N N K V L Y L
Sbjct: 93 FLMSP---IKTEQRQPS-----MMTRMYIEQRD-RLYNDNQVFAKY---NVSRLQPYLKL 140
Query: 125 KEAMNEAIKDWSNNILNSHYLIG------TASGPHPYPTIVRDFQSIIGYEIHQQLNFNF 178
++A+ E ++ N ++ ++G + Y++ +++F
Sbjct: 141 RQALLE-LRPAKNVLI--DGVLGSGKTWVALD-------VCLS------YKVQCKMDFKI 184
Query: 179 YNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQS 238
+ ++ L C + +L+ + L + D N+T +++I
Sbjct: 185 F---WL---------NLKN------CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 239 LLAKFLKKKRIICE 252
+ + + +R++
Sbjct: 227 IHSIQAELRRLLKS 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 84/214 (39%)
Query: 37 REDLNFTGAHKMNNSIAQ-SLLA------KFLKKKRII--CETGAGMHGVS----TATSC 83
+ L+ T Q +L + LK K +I T AG H S A +
Sbjct: 1723 KGLLSAT-------QFTQPALTLMEKAAFEDLKSKGLIPADATFAG-H--SLGEYAALAS 1772
Query: 84 C--LLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY-GNLKEAMNEAIKDWSNNIL 140
++++ES V +V Y G M A+
Sbjct: 1773 LADVMSIES------------------------LVEVVFYRG---MTMQVAVPRDELG-- 1803
Query: 141 NSHYLIGTASGPHPYPTIVRDF-----QSI---IGYEIHQQL---NFNFYNKKYILACVG 189
S+Y + A P + F Q + +G + N+N N++Y+ A
Sbjct: 1804 RSNYGMI-AINPG---RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA--- 1856
Query: 190 GGSNALGRPTPIYYCKNISNILKGSKIFLKREDL 223
G AL ++N+L K+ ++ D+
Sbjct: 1857 GDLRAL---------DTVTNVLNFIKL--QKIDI 1879
Score = 37.3 bits (86), Expect = 0.010
Identities = 47/259 (18%), Positives = 74/259 (28%), Gaps = 98/259 (37%)
Query: 158 IVRD--------FQSIIGYEIHQQLNFNFYNKKYILACVGGGSNALGRPTPIYYCKNI-- 207
IV + F G I + Y + + I+ N
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRE---------NYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 208 -SNILKGSKIFLKREDLNFTGAHKMNNSIAQ-SLLA------KFLKKKRII--CETGAGM 257
S + K L+ T Q +L + LK K +I T AG
Sbjct: 1715 TSYTFRSEK-----GLLSAT-------QFTQPALTLMEKAAFEDLKSKGLIPADATFAG- 1761
Query: 258 HGVS----TATSCC--LLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQY-GNLKEA 310
H S A + ++++ES V +V Y G
Sbjct: 1762 H--SLGEYAALASLADVMSIES------------------------LVEVVFYRG---MT 1792
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDF-----QSI---IGYEIHQQL---NF 359
M A+ S+Y + A P + F Q + +G + N+
Sbjct: 1793 MQVAVPRDELG--RSNYGMI-AINPG---RVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 360 NFYNKKYILACVGGGSNAL 378
N N++Y+ A G AL
Sbjct: 1847 NVENQQYVAA---GDLRAL 1862
Score = 32.3 bits (73), Expect = 0.32
Identities = 35/258 (13%), Positives = 73/258 (28%), Gaps = 104/258 (40%)
Query: 87 NLESIIYIGENDYKRQNINVKKIKLLGGTVY------LVQYGNLKEAMNEAIKDWSNNIL 140
+ S + E LL T + L++ A E +K
Sbjct: 1713 HSTSYTFRSEKG------------LLSATQFTQPALTLMEK-----AAFEDLKSKGLIPA 1755
Query: 141 NS----H----Y--LIGTASGPHPYPTIVRDFQSII------GYEIHQQL-NFNFYNKKY 183
++ H Y L A V +S++ G + + Y
Sbjct: 1756 DATFAGHSLGEYAALASLAD--------VMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 184 ILACVGGGS--NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLA 241
+ + G + + Y + + K + + E +N+ N Q
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVG---KRTGWLV--EIVNY------NVENQQ---- 1852
Query: 242 KFLKKKRIICETGAG-MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300
+ AG + + T T+ LN I ++KI ++
Sbjct: 1853 -------YVA---AGDLRALDTVTNV--LN---------------FIKLQKIDII----- 1880
Query: 301 LVQYGNLKEAMN-EAIKD 317
L+++++ E ++
Sbjct: 1881 -----ELQKSLSLEEVEG 1893
Score = 28.5 bits (63), Expect = 4.8
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 32/71 (45%)
Query: 66 IICETGAG-MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNL 124
+ AG + + T T+ LN I ++KI ++ L
Sbjct: 1853 YVA---AGDLRALDTVTNV--LN---------------FIKLQKIDII----------EL 1882
Query: 125 KEAMN-EAIKD 134
+++++ E ++
Sbjct: 1883 QKSLSLEEVEG 1893
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 28.7 bits (64), Expect = 3.3
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 50 NSIAQSLLAKFLKK-KRIICETGAGMHGVSTA 80
+I + L ++I+ TGA GVST+
Sbjct: 34 FTIDH--FIQKLHTARKILVLTGA---GVSTS 60
Score = 28.7 bits (64), Expect = 3.3
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 233 NSIAQSLLAKFLKK-KRIICETGAGMHGVSTA 263
+I + L ++I+ TGA GVST+
Sbjct: 34 FTIDH--FIQKLHTARKILVLTGA---GVSTS 60
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 28.3 bits (64), Expect = 3.8
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 48 MNNSIAQSLLAKFLKK-KRIICETGAGMHGVST 79
M + I + A+ L K K + TGAG+ S
Sbjct: 1 MEDEIRK--AAEILAKSKHAVVFTGAGI---SA 28
Score = 28.3 bits (64), Expect = 3.8
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 231 MNNSIAQSLLAKFLKK-KRIICETGAGMHGVST 262
M + I + A+ L K K + TGAG+ S
Sbjct: 1 MEDEIRK--AAEILAKSKHAVVFTGAGI---SA 28
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 28.2 bits (63), Expect = 5.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 42 FTGAHKMNNSIAQSLLAKFLKKKRIICETG 71
FTG+ ++ SI ++L AK +I ETG
Sbjct: 733 FTGSTEVARSINRALAAKDGPIVPLIAETG 762
Score = 28.2 bits (63), Expect = 5.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 225 FTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
FTG+ ++ SI ++L AK +I ETG
Sbjct: 733 FTGSTEVARSINRALAAKDGPIVPLIAETG 762
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 27.7 bits (62), Expect = 6.2
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 48 MNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTA 80
+ + + LA+ + + ++ TGA G+STA
Sbjct: 30 LERKVWE--LARLVWQSSSVVFHTGA---GISTA 58
Score = 27.7 bits (62), Expect = 6.2
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 231 MNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTA 263
+ + + LA+ + + ++ TGA G+STA
Sbjct: 30 LERKVWE--LARLVWQSSSVVFHTGA---GISTA 58
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 28.0 bits (63), Expect = 6.7
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 40 LNFTG----AHKMNNSIAQSLLAKFLKKKRIICETG 71
+NFTG + +AQ L +F R+ E G
Sbjct: 282 INFTGSVPTFKHLWRQVAQ-NLDRFRTFPRLAGECG 316
Score = 28.0 bits (63), Expect = 6.7
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 223 LNFTG----AHKMNNSIAQSLLAKFLKKKRIICETG 254
+NFTG + +AQ L +F R+ E G
Sbjct: 282 INFTGSVPTFKHLWRQVAQ-NLDRFRTFPRLAGECG 316
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,353,474
Number of extensions: 381275
Number of successful extensions: 813
Number of sequences better than 10.0: 1
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 62
Length of query: 410
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 314
Effective length of database: 4,021,377
Effective search space: 1262712378
Effective search space used: 1262712378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)