RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11239
(410 letters)
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 143 bits (362), Expect = 9e-40
Identities = 112/210 (53%), Positives = 145/210 (69%), Gaps = 4/210 (1%)
Query: 193 NALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICE 252
GRPTP+YY K ++ + G+KI+LKREDL GAHK NN+I Q+LLAKF+ K R+I E
Sbjct: 45 TWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAE 104
Query: 253 TGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEA 310
TGAG HGV+TA + LL ++ IY+G D +RQ +NV ++KLLG V V G LK+A
Sbjct: 105 TGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDA 164
Query: 311 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-KYILA 369
+NEA++DW +HYLIG+ GPHPYPTIVRDFQS+IG E Q+ I+A
Sbjct: 165 INEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVA 224
Query: 370 CVGGGSNALGIFYTFI-NSNFKLVAIESGG 398
CVGGGSNA+GIFY F+ + KLV +E+GG
Sbjct: 225 CVGGGSNAMGIFYPFVNDKKVKLVGVEAGG 254
Score = 135 bits (340), Expect = 2e-36
Identities = 102/187 (54%), Positives = 131/187 (70%), Gaps = 3/187 (1%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPTP+YY K ++ + G+KI+LKREDL GAHK NN+I Q+LLAKF+ K R+I ETGA
Sbjct: 48 GRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGA 107
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNE 130
G HGV+TA + LL ++ IY+G D +RQ +NV ++KLLG V V G LK+A+NE
Sbjct: 108 GQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINE 167
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-KYILACVG 189
A++DW +HYLIG+ GPHPYPTIVRDFQS+IG E Q+ I+ACVG
Sbjct: 168 ALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVG 227
Query: 190 GGSNALG 196
GGSNA+G
Sbjct: 228 GGSNAMG 234
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 134 bits (337), Expect = 4e-36
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 4/201 (1%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
GRPT + C+NI+ + ++LKREDL GAHK N + Q+LLAK + K II ETGA
Sbjct: 53 GRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGA 111
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYG--NLKEAMNE 130
G HGV++A + LL L+ IY+G D +RQ+ NV +++L+G V V G LK+A NE
Sbjct: 112 GQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNE 171
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNF-YNKKYILACVG 189
A++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E Q+ ++ACVG
Sbjct: 172 ALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVG 231
Query: 190 GGSNALGRPTPIYYCKNISNI 210
GGSNA+G ++ I
Sbjct: 232 GGSNAIGMFADFINDTSVGLI 252
Score = 133 bits (335), Expect = 9e-36
Identities = 95/210 (45%), Positives = 130/210 (61%), Gaps = 15/210 (7%)
Query: 176 FNFYNKKYILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSI 235
F K Y GRPT + C+NI+ + ++LKREDL GAHK N +
Sbjct: 44 FADLLKNYA-----------GRPTALTKCQNITAGT-RTTLYLKREDLLHGGAHKTNQVL 91
Query: 236 AQSLLAKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLL 295
Q+LLAK + K II ETGAG HGV++A + LL L+ IY+G D +RQ+ NV +++L+
Sbjct: 92 GQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLM 151
Query: 296 GGTVYLVQYG--NLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEI 353
G V V G LK+A NEA++DWS + +HY++GTA+GPHPYPTIVR+FQ +IG E
Sbjct: 152 GAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEET 211
Query: 354 HQQLNFNF-YNKKYILACVGGGSNALGIFY 382
Q+ ++ACVGGGSNA+G+F
Sbjct: 212 KAQILDKEGRLPDAVIACVGGGSNAIGMFA 241
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 82.6 bits (203), Expect = 4e-18
Identities = 31/195 (15%), Positives = 59/195 (30%), Gaps = 19/195 (9%)
Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETG 254
+ TP+ + +S+ L + I +KRED + K+ + A +K +
Sbjct: 24 AAQVTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITAS 82
Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEA 314
AG H A S L ++++I + + V+ GG V
Sbjct: 83 AGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGF---GGEVL-------------- 125
Query: 315 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-KYILACVGG 373
+ + + + + + + I G + VGG
Sbjct: 126 LHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGG 185
Query: 374 GSNALGIFYTFINSN 388
G A G+
Sbjct: 186 GGLAAGVAVLIKQLM 200
Score = 77.6 bits (190), Expect = 2e-16
Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 19/185 (10%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGA 72
+ TP+ + +S+ L + I +KRED + K+ + A +K + A
Sbjct: 25 AQVTPLQKMEKLSSRL-DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASA 83
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
G H A S L ++++I + + V+ GG V +
Sbjct: 84 GNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGF---GGEVL--------------L 126
Query: 133 KDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNK-KYILACVGGG 191
+ + + + + + I G + VGGG
Sbjct: 127 HGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGG 186
Query: 192 SNALG 196
A G
Sbjct: 187 GLAAG 191
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 77.8 bits (190), Expect = 2e-16
Identities = 40/201 (19%), Positives = 62/201 (30%), Gaps = 15/201 (7%)
Query: 196 GRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRIIC 251
PTPI +S L G ++ KRED N A N + L A ++
Sbjct: 13 FGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVS 72
Query: 252 ETGA-GMHGVSTATSCCLLNLESIIYIGEN-----DYKRQNINVKKIKLLGGTVYLVQYG 305
G A L ++ ++ + N++ ++LG V LV G
Sbjct: 73 IGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG 132
Query: 306 N--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 363
E + Y I HP + + +L F F
Sbjct: 133 FDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFD- 191
Query: 364 KKYILACVGGGSNALGIFYTF 384
Y++ C GS G+ F
Sbjct: 192 --YVVVCSVTGSTQAGMVVGF 210
Score = 75.5 bits (184), Expect = 9e-16
Identities = 39/201 (19%), Positives = 60/201 (29%), Gaps = 15/201 (7%)
Query: 13 GRPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNSIAQSLL---AKFLKKKRIIC 68
PTPI +S L G ++ KRED N A N + L A ++
Sbjct: 13 FGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVS 72
Query: 69 ETGA-GMHGVSTATSCCLLNLESIIYIGEN-----DYKRQNINVKKIKLLGGTVYLVQYG 122
G A L ++ ++ + N++ ++LG V LV G
Sbjct: 73 IGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDG 132
Query: 123 N--LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 180
E + Y I HP + + +L F F
Sbjct: 133 FDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFD- 191
Query: 181 KKYILACVGGGSNALGRPTPI 201
Y++ C GS G
Sbjct: 192 --YVVVCSVTGSTQAGMVVGF 210
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 75.5 bits (184), Expect = 1e-15
Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 14/201 (6%)
Query: 197 RPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNS-IAQSLLAKFL---KKKRIIC 251
P+PI +S L ++ KRED N A N + ++ + +
Sbjct: 14 GPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSI 73
Query: 252 ETGAGMHGVSTATSCCLLNLESIIYI--------GENDYKRQNINVKKIKLLGGTVYLVQ 303
A L + ++ E D + N++ +++G V +++
Sbjct: 74 GGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIE 133
Query: 304 YGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 363
M ++ + + ++ + E+ Q
Sbjct: 134 -DGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIK 192
Query: 364 KKYILACVGGGSNALGIFYTF 384
I+ C GS GI
Sbjct: 193 FDKIVVCCVTGSTTAGILAGM 213
Score = 73.2 bits (178), Expect = 6e-15
Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 14/201 (6%)
Query: 14 RPTPIYYCKNISNILKGS-KIFLKREDLNFTGAHKMNNS-IAQSLLAKFL---KKKRIIC 68
P+PI +S L ++ KRED N A N + ++ + +
Sbjct: 14 GPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSI 73
Query: 69 ETGAGMHGVSTATSCCLLNLESIIYI--------GENDYKRQNINVKKIKLLGGTVYLVQ 120
A L + ++ E D + N++ +++G V +++
Sbjct: 74 GGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIE 133
Query: 121 YGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 180
M ++ + + ++ + E+ Q
Sbjct: 134 -DGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVELGIK 192
Query: 181 KKYILACVGGGSNALGRPTPI 201
I+ C GS G +
Sbjct: 193 FDKIVVCCVTGSTTAGILAGM 213
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 71.9 bits (175), Expect = 1e-14
Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 21/190 (11%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 256
TP+ ++ +++F K E+ GA K ++ ++K + +G
Sbjct: 20 NKTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSG 78
Query: 257 MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ--YGNLKEAMNEA 314
H + A S +L + + I + + + + V K GG V + + ++ E
Sbjct: 79 NHAQAIALSAKILGIPAKIIMPLDAPEAK---VAATKGYGGQVIMYDRYKDDREKMAKEI 135
Query: 315 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
+ I+ + +G E+ +++ + C+GGG
Sbjct: 136 SEREGLTIIPPYDHPHVLAGQGTAA-----------KELFEEVG----PLDALFVCLGGG 180
Query: 375 SNALGIFYTF 384
G
Sbjct: 181 GLLSGSALAA 190
Score = 68.4 bits (166), Expect = 2e-13
Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 21/185 (11%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 73
TP+ ++ +++F K E+ GA K ++ ++K + +G
Sbjct: 20 NKTPVLTSSTVNKEF-VAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSG 78
Query: 74 MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ--YGNLKEAMNEA 131
H + A S +L + + I + + + + V K GG V + + ++ E
Sbjct: 79 NHAQAIALSAKILGIPAKIIMPLDAPEAK---VAATKGYGGQVIMYDRYKDDREKMAKEI 135
Query: 132 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 191
+ I+ + +G E+ +++ + C+GGG
Sbjct: 136 SEREGLTIIPPYDHPHVLAGQGTAA-----------KELFEEVG----PLDALFVCLGGG 180
Query: 192 SNALG 196
G
Sbjct: 181 GLLSG 185
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 69.9 bits (170), Expect = 8e-14
Identities = 30/184 (16%), Positives = 52/184 (28%), Gaps = 16/184 (8%)
Query: 16 TPIYYCKNISNIL-KGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETG 71
TP+ I ++ K E N G+ K I + LK I E
Sbjct: 45 TPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPT 104
Query: 72 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEA 131
+G G+ A + + II + K + V ++ LG + ++
Sbjct: 105 SGNTGIGLALAAAVRGYRCIIVM---PEKMSSEKVDVLRALGAEIVRTPTNARFDSPESH 161
Query: 132 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKK--YILACVG 189
+ L H + Y+ + K ++A VG
Sbjct: 162 VGVA-------WRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVG 214
Query: 190 GGSN 193
G
Sbjct: 215 TGGT 218
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 69.0 bits (168), Expect = 9e-14
Identities = 40/203 (19%), Positives = 65/203 (32%), Gaps = 19/203 (9%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMH 258
TPI +I + +IFLK E N G+ K ++ L A+ + +
Sbjct: 11 TPIVRLDSIDS-----RIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGN 65
Query: 259 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDW 318
+I + V K+ G + L + E +
Sbjct: 66 MGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML--GAELVLTPGELGMKGAVEKALEI 123
Query: 319 SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNAL 378
S +H L P V Q G EI +Q+++ +A VG G
Sbjct: 124 SRET-GAHML-----NQFENPYNVYSHQFTTGPEILKQMDYQI---DAFVAGVGTGGTIS 174
Query: 379 GI---FYTFINSNFKLVAIESGG 398
G+ F + K+VA+E
Sbjct: 175 GVGRVLKGFFGNGVKIVAVEPAK 197
Score = 63.2 bits (153), Expect = 8e-12
Identities = 35/181 (19%), Positives = 56/181 (30%), Gaps = 16/181 (8%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGMH 75
TPI +I + +IFLK E N G+ K ++ L A+ + +
Sbjct: 11 TPIVRLDSIDS-----RIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGN 65
Query: 76 GVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKDW 135
+I + V K+ G + L + E +
Sbjct: 66 MGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML--GAELVLTPGELGMKGAVEKALEI 123
Query: 136 SNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNAL 195
S +H L P V Q G EI +Q+++ +A VG G
Sbjct: 124 SRET-GAHML-----NQFENPYNVYSHQFTTGPEILKQMDYQI---DAFVAGVGTGGTIS 174
Query: 196 G 196
G
Sbjct: 175 G 175
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 66.1 bits (160), Expect = 9e-13
Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 21/210 (10%)
Query: 192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLK--K 246
A+G+ TP+ + +++++K E LN G+ K I + L+
Sbjct: 4 EGAIGK-TPVVRLAKVVEPD-MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGS 61
Query: 247 KRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGN 306
++I E +G G+ A I+ Q +K L LV
Sbjct: 62 GQVIVEPTSGNTGIGLAMIAASRGYRLILT-----MPAQMSEERKRVLKAFGAELVLTDP 116
Query: 307 LKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKY 366
+ + + ++ P VR G E+++ L
Sbjct: 117 ERRMLAAREEALRLKEELGAFMP----DQFKNPANVRAHYETTGPELYEALEGRID---A 169
Query: 367 ILACVGGGSNALGIFYTF--INSNFKLVAI 394
+ G G G+ + K++A+
Sbjct: 170 FVYGSGTGGTITGVGRYLKERIPHVKVIAV 199
Score = 65.7 bits (159), Expect = 1e-12
Identities = 30/200 (15%), Positives = 57/200 (28%), Gaps = 18/200 (9%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLK--KKRIICET 70
TP+ + +++++K E LN G+ K I + L+ ++I E
Sbjct: 10 TPVVRLAKVVEPD-MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEP 68
Query: 71 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNE 130
+G G+ A I+ Q +K L LV + +
Sbjct: 69 TSGNTGIGLAMIAASRGYRLILT-----MPAQMSEERKRVLKAFGAELVLTDPERRMLAA 123
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGG 190
+ ++ P VR G E+++ L + G
Sbjct: 124 REEALRLKEELGAFMP----DQFKNPANVRAHYETTGPELYEALEGRID---AFVYGSGT 176
Query: 191 GSNALGRPTPIYYCKNISNI 210
G G + +
Sbjct: 177 GGTITGVGRYLKERIPHVKV 196
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 64.3 bits (155), Expect = 5e-12
Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 15/178 (8%)
Query: 14 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 73
TP+ + + +L G ++ LK E L TG+ K ++++ A L+ + + +G
Sbjct: 18 HRTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSK---ALALENPKGLLAVSSG 73
Query: 74 MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIK 133
H A + +L +++++ + E+ + + + + A +
Sbjct: 74 NHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKNREEVARALQEE 133
Query: 134 DWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 191
I P P ++ + + Q + + GGG
Sbjct: 134 TGYALI-----------HPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGG 180
Score = 64.3 bits (155), Expect = 5e-12
Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 15/178 (8%)
Query: 197 RPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAG 256
TP+ + + +L G ++ LK E L TG+ K ++++ A L+ + + +G
Sbjct: 18 HRTPLLTSRLLDGLL-GKRLLLKAEHLQKTGSFKARGALSK---ALALENPKGLLAVSSG 73
Query: 257 MHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIK 316
H A + +L +++++ + E+ + + + + A +
Sbjct: 74 NHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKNREEVARALQEE 133
Query: 317 DWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
I P P ++ + + Q + + GGG
Sbjct: 134 TGYALI-----------HPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGG 180
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 63.3 bits (152), Expect = 1e-11
Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 6/164 (3%)
Query: 13 GRP----TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIIC 68
G P TPI +S + G+ ++LK + +G+ K+ +C
Sbjct: 1 GEPLHVKTPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVC 59
Query: 69 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAM 128
+ AG G++ A + L + + I + +K V + + A
Sbjct: 60 SS-AGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAK 118
Query: 129 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ 172
A + + G +++ I
Sbjct: 119 ALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIAL 162
Score = 63.3 bits (152), Expect = 1e-11
Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 6/164 (3%)
Query: 196 GRP----TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIIC 251
G P TPI +S + G+ ++LK + +G+ K+ +C
Sbjct: 1 GEPLHVKTPIRDSMALSKMA-GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVC 59
Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAM 311
+ AG G++ A + L + + I + +K V + + A
Sbjct: 60 SS-AGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAK 118
Query: 312 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQ 355
A + + G +++ I
Sbjct: 119 ALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIAL 162
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 61.5 bits (148), Expect = 3e-11
Identities = 31/198 (15%), Positives = 61/198 (30%), Gaps = 16/198 (8%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLLAKFLKKKRIICETGA 72
TP+ + + GS+++LK E N G+ K + I ++ +K ++ E +
Sbjct: 10 TPLVKLQRMGPDN-GSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATS 68
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
G G++ A L + + ++ G + LV E +
Sbjct: 69 GNTGIALAMIAALKGYRMKLLM---PDNMSQERRAAMRAYGAELILVTKEQGMEGARDLA 125
Query: 133 KDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGS 192
+ +N P + G EI QQ + ++ +G
Sbjct: 126 LEMANRGEGKLL------DQFNNPDNPYAHYTTTGPEIWQQTGGRI---THFVSSMGTTG 176
Query: 193 NALGRPTPIYYCKNISNI 210
G + I
Sbjct: 177 TITGVSRFMREQSKPVTI 194
Score = 61.5 bits (148), Expect = 3e-11
Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 21/176 (11%)
Query: 184 ILACVGGGSNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHK---MNNSIAQSLL 240
+ +G TP+ + + GS+++LK E N G+ K + I ++
Sbjct: 3 LEQTIGN--------TPLVKLQRMGPDN-GSEVWLKLEGNNPAGSVKDRAALSMIVEAEK 53
Query: 241 AKFLKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVY 300
+K ++ E +G G++ A L + + ++ G +
Sbjct: 54 RGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLM---PDNMSQERRAAMRAYGAELI 110
Query: 301 LVQYGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQ 356
LV E + + +N P + G EI QQ
Sbjct: 111 LVTKEQGMEGARDLALEMANRGEGKLL------DQFNNPDNPYAHYTTTGPEIWQQ 160
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 58.9 bits (141), Expect = 3e-10
Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 15/195 (7%)
Query: 195 LGRPTPIYYCKNISNILKGSKIFLKREDLN--FTGAHK---MNNSIAQSLLAKFLKKKRI 249
+ TPI Y NIS + G+ +++KR+DL G +K + + +L I
Sbjct: 18 IPWETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKG--ADVVI 74
Query: 250 ICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKE 309
H T + L L++I+ + + + N + KI + VY +
Sbjct: 75 TVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELM 134
Query: 310 AMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILA 369
E I + Y+I G P T+ + + + I+
Sbjct: 135 KYAEEIAEELKREGRKPYVIPPG-GASPIGTLGYVRA------VGEIATQSEVKFDSIVV 187
Query: 370 CVGGGSNALGIFYTF 384
G G G+
Sbjct: 188 AAGSGGTLAGLSLGL 202
Score = 57.8 bits (138), Expect = 7e-10
Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 15/198 (7%)
Query: 13 GRPTPIYYCKNISNILKGSKIFLKREDLN--FTGAHK---MNNSIAQSLLAKFLKKKRII 67
TPI Y NIS + G+ +++KR+DL G +K + + +L I
Sbjct: 19 PWETPIQYLPNISREI-GADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKG--ADVVIT 75
Query: 68 CETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEA 127
H T + L L++I+ + + + N + KI + VY +
Sbjct: 76 VGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMK 135
Query: 128 MNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILAC 187
E I + Y+I G P T+ + + + I+
Sbjct: 136 YAEEIAEELKREGRKPYVIPPG-GASPIGTLGYVRA------VGEIATQSEVKFDSIVVA 188
Query: 188 VGGGSNALGRPTPIYYCK 205
G G G +
Sbjct: 189 AGSGGTLAGLSLGLSILN 206
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 58.6 bits (140), Expect = 4e-10
Identities = 30/209 (14%), Positives = 62/209 (29%), Gaps = 14/209 (6%)
Query: 199 TPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGM 257
TP+ K K G +++ K E LN TG+ K A + + C + G
Sbjct: 29 TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAVACAST-GN 87
Query: 258 HGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKD 317
S A + +I+ + + + G + GN +A+
Sbjct: 88 TAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVH---GARIVQVEGNFDDAL------ 138
Query: 318 WSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNA 377
L + + + +P+ + Q + +E+ +L + + G +
Sbjct: 139 RLTQKLTEAFPVALVNSVNPH---RLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAH 195
Query: 378 LGIFYTFINSNFKLVAIESGGISKKRTAS 406
+ + G A
Sbjct: 196 WMGYKAYHALGKAKRLPRMLGFQAAGAAP 224
Score = 56.6 bits (135), Expect = 1e-09
Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 14/180 (7%)
Query: 16 TPIYYCKNISNILK-GSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKRIICETGAGM 74
TP+ K K G +++ K E LN TG+ K A + + C + G
Sbjct: 29 TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAVACAST-GN 87
Query: 75 HGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAIKD 134
S A + +I+ + + + G + GN +A+
Sbjct: 88 TAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVH---GARIVQVEGNFDDAL------ 138
Query: 135 WSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGSNA 194
L + + + +P+ + Q + +E+ +L + + G +
Sbjct: 139 RLTQKLTEAFPVALVNSVNPH---RLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAH 195
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 57.5 bits (138), Expect = 9e-10
Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 20/191 (10%)
Query: 5 DLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGA-HK---MNNSIAQSLLAKF 60
D F G+PTP+ + + G +++LK E N K I++ L++
Sbjct: 88 DFFER---GKPTPLVRSRL--QLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISR--LSRR 140
Query: 61 LKKKRIICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQ 120
++K ++ + + GV+ + L + +Y+ + +LLG V +
Sbjct: 141 VEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGA---AEEFGKLLPRLLGAQVIVDP 197
Query: 121 YGNLKEAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYN 180
+ + S N H EI Q
Sbjct: 198 EAPSTVHLLPRVMKDSKNEGFVHV------NQFYNDANFEAHMRGTAREIFVQSRRGGLA 251
Query: 181 KKYILACVGGG 191
+ + +G
Sbjct: 252 LRGVAGSLGTS 262
Score = 56.7 bits (136), Expect = 2e-09
Identities = 29/206 (14%), Positives = 67/206 (32%), Gaps = 19/206 (9%)
Query: 196 GRPTPIYYCKNISNILKGSKIFLKREDLNFTGA-HK---MNNSIAQSLLAKFLKKKRIIC 251
G+PTP+ + + G +++LK E N K I++ L++ ++K ++
Sbjct: 93 GKPTPLVRSRL--QLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISR--LSRRVEKGSLVA 148
Query: 252 ETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAM 311
+ + GV+ + L + +Y+ + +LLG V + +
Sbjct: 149 DATSSNFGVALSAVARLYGYRARVYLPGA---AEEFGKLLPRLLGAQVIVDPEAPSTVHL 205
Query: 312 NEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACV 371
+ S N H EI Q + + +
Sbjct: 206 LPRVMKDSKNEGFVHV------NQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSL 259
Query: 372 GGGSNA--LGIFYTFINSNFKLVAIE 395
G + + ++ + + V ++
Sbjct: 260 GTSGHMSAAAFYLQSVDPSIRAVLVQ 285
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 57.7 bits (138), Expect = 1e-09
Identities = 19/192 (9%), Positives = 53/192 (27%), Gaps = 19/192 (9%)
Query: 199 TPIYYCKNISN-ILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKR----IICET 253
+ +++ + L + +++K ++ TG+ K L+K + +
Sbjct: 122 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA 181
Query: 254 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNE 313
G + + C + SI+++ N + + G +++
Sbjct: 182 STGDTSAALSAYCASAGIPSIVFLPANKISMAQLV-----------QPIANGAFVLSIDT 230
Query: 314 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGG 373
I + + I F++ +++ G
Sbjct: 231 DFDGCMKLIREITAELPI---YLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGN 287
Query: 374 GSNALGIFYTFI 385
N + F
Sbjct: 288 LGNIYAFYKGFK 299
Score = 56.2 bits (134), Expect = 3e-09
Identities = 21/201 (10%), Positives = 61/201 (30%), Gaps = 17/201 (8%)
Query: 16 TPIYYCKNISN-ILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKFLKKKR----IICET 70
+ +++ + L + +++K ++ TG+ K L+K + +
Sbjct: 122 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA 181
Query: 71 GAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNE 130
G + + C + SI+++ N + + G +++
Sbjct: 182 STGDTSAALSAYCASAGIPSIVFLPANKISMAQLV-----------QPIANGAFVLSIDT 230
Query: 131 AIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGG 190
I + + ++ + Q EI QQ ++ + + G
Sbjct: 231 DFDGCMKLIREITAELPI-YLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLG 289
Query: 191 GSNALGRPTPIYYCKNISNIL 211
A + + + + +
Sbjct: 290 NIYAFYKGFKMCQELGLVDRI 310
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 56.1 bits (134), Expect = 2e-09
Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 18/202 (8%)
Query: 192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKR 248
S +G TP+ I +I K E N + + K N I + LK
Sbjct: 8 SLTIGH-TPLVRLNRIG----NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGV 62
Query: 249 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLK 308
+ E G G++ A + + + E + +K L V +K
Sbjct: 63 ELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLK--ALGANLVLTEGAKGMK 120
Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
A+ +A + +++ L P + G EI + + +
Sbjct: 121 GAIQKAEEIVASDPQKYLLLQ-----QFSNPANPEIHEKTTGPEIWEDTDGQV---DVFI 172
Query: 369 ACVGGGSNALGIFYTFINSNFK 390
+ VG G G+ + K
Sbjct: 173 SGVGTGGTLTGVTRYIKGTKGK 194
Score = 54.2 bits (129), Expect = 9e-09
Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 17/181 (9%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETGA 72
TP+ I +I K E N + + K N I + LK + E
Sbjct: 14 TPLVRLNRIG----NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTN 69
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
G G++ A + + + E + +K L V +K A+ +A
Sbjct: 70 GNTGIALAYVAAARGYKLTLTMPETMSIERRKLLK--ALGANLVLTEGAKGMKGAIQKAE 127
Query: 133 KDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGS 192
+ +++ L P + G EI + + ++ VG G
Sbjct: 128 EIVASDPQKYLLLQ-----QFSNPANPEIHEKTTGPEIWEDTDGQV---DVFISGVGTGG 179
Query: 193 N 193
Sbjct: 180 T 180
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 55.7 bits (133), Expect = 3e-09
Identities = 31/196 (15%), Positives = 68/196 (34%), Gaps = 17/196 (8%)
Query: 192 SNALGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKR 248
S ++G TP+ K+ + +K E N + + K N + Q+ L K +
Sbjct: 7 SYSIGN-TPLVRLKHFG---HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGK 62
Query: 249 IICETGAGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLK 308
I + +G G++ A + + + E + + LG + L +
Sbjct: 63 EIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRL---LCGLGVNLVLTEGAKGM 119
Query: 309 EAMNEAIKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYIL 368
+ ++ + + + ++ P + + G EI + + ++
Sbjct: 120 KGAIAKAEEIVASDPSRYVML----KQFENPANPQIHRETTGPEIWKDTDGKVD---VVV 172
Query: 369 ACVGGGSNALGIFYTF 384
A VG G + GI
Sbjct: 173 AGVGTGGSITGISRAI 188
Score = 55.0 bits (131), Expect = 5e-09
Identities = 27/181 (14%), Positives = 62/181 (34%), Gaps = 16/181 (8%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLKKKRIICETGA 72
TP+ K+ + +K E N + + K N + Q+ L K + I + +
Sbjct: 13 TPLVRLKHFG---HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATS 69
Query: 73 GMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEAI 132
G G++ A + + + E + + LG + L + +
Sbjct: 70 GNTGIALAYVAAARGYKITLTMPETMSLERKRL---LCGLGVNLVLTEGAKGMKGAIAKA 126
Query: 133 KDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGGS 192
++ + + + ++ P + + G EI + + ++A VG G
Sbjct: 127 EEIVASDPSRYVML----KQFENPANPQIHRETTGPEIWKDTDGKVD---VVVAGVGTGG 179
Query: 193 N 193
+
Sbjct: 180 S 180
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 50.3 bits (119), Expect = 2e-07
Identities = 25/192 (13%), Positives = 52/192 (27%), Gaps = 16/192 (8%)
Query: 199 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLK-KKRIICETG 254
TP+ Y N++ ++ K E + + K + I+ + +K + ++ E
Sbjct: 14 TPLVYLNNVAEGC-VGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPT 72
Query: 255 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEA 314
+G GV + I + G + L +
Sbjct: 73 SGNTGVGL---AFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAK 129
Query: 315 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 374
++ N + L P + G EI + ++ +G G
Sbjct: 130 AEEILAKTPNGYMLQ-----QFENPANPKIHYETTGPEIWKGTGGKID---GFVSGIGTG 181
Query: 375 SNALGIFYTFIN 386
G
Sbjct: 182 GTITGAGKYLKE 193
Score = 48.7 bits (115), Expect = 5e-07
Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 16/182 (8%)
Query: 16 TPIYYCKNISNILKGSKIFLKREDLNFTGAHKMN---NSIAQSLLAKFLK-KKRIICETG 71
TP+ Y N++ ++ K E + + K + I+ + +K + ++ E
Sbjct: 14 TPLVYLNNVAEGC-VGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPT 72
Query: 72 AGMHGVSTATSCCLLNLESIIYIGENDYKRQNINVKKIKLLGGTVYLVQYGNLKEAMNEA 131
+G GV + I + G + L +
Sbjct: 73 SGNTGVGL---AFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAK 129
Query: 132 IKDWSNNILNSHYLIGTASGPHPYPTIVRDFQSIIGYEIHQQLNFNFYNKKYILACVGGG 191
++ N + L P + G EI + ++ +G G
Sbjct: 130 AEEILAKTPNGYMLQ-----QFENPANPKIHYETTGPEIWKGTGGKID---GFVSGIGTG 181
Query: 192 SN 193
Sbjct: 182 GT 183
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 29.1 bits (64), Expect = 0.94
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 48 MNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTA 80
M + I + A+ L K K + TGAG+ S
Sbjct: 1 MEDEIRK--AAEILAKSKHAVVFTGAGI---SAE 29
Score = 29.1 bits (64), Expect = 0.94
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 231 MNNSIAQSLLAKFLKK-KRIICETGAGMHGVSTA 263
M + I + A+ L K K + TGAG+ S
Sbjct: 1 MEDEIRK--AAEILAKSKHAVVFTGAGI---SAE 29
>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein
AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId:
358]}
Length = 87
Score = 26.2 bits (57), Expect = 2.5
Identities = 15/72 (20%), Positives = 21/72 (29%)
Query: 1 MEWFDLFYNPKKGRPTPIYYCKNISNILKGSKIFLKREDLNFTGAHKMNNSIAQSLLAKF 60
M FDL+Y P R I E L GA K + +
Sbjct: 5 MNTFDLYYWPVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLID 64
Query: 61 LKKKRIICETGA 72
++ I + A
Sbjct: 65 RERNFAISQMPA 76
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 27.5 bits (60), Expect = 2.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 49 NNSIAQSLLAKFLKK-KRIICETGAGMHGVSTA 80
++S+A KF K K I+ +GAG+ S
Sbjct: 2 SSSMAD--FRKFFAKAKHIVIISGAGV---SAE 29
Score = 27.5 bits (60), Expect = 2.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 232 NNSIAQSLLAKFLKK-KRIICETGAGMHGVSTA 263
++S+A KF K K I+ +GAG+ S
Sbjct: 2 SSSMAD--FRKFFAKAKHIVIISGAGV---SAE 29
>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B, GatB, N-terminal domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 290
Score = 26.8 bits (59), Expect = 4.5
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 165 IIGYEIHQQLN 175
+IG E+H +L
Sbjct: 3 VIGLEVHVELK 13
Score = 26.8 bits (59), Expect = 4.5
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 348 IIGYEIHQQLN 358
+IG E+H +L
Sbjct: 3 VIGLEVHVELK 13
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 26.2 bits (57), Expect = 6.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 100 KRQNINVKKIKLLG----GTVYLVQYGNLKEAMNEAIK 133
KR N+ + I+L G G+V Y K+ ++ AIK
Sbjct: 6 KRDNLLIADIEL-GCGNFGSVRQGVYRMRKKQIDVAIK 42
Score = 26.2 bits (57), Expect = 6.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 283 KRQNINVKKIKLLG----GTVYLVQYGNLKEAMNEAIK 316
KR N+ + I+L G G+V Y K+ ++ AIK
Sbjct: 6 KRDNLLIADIEL-GCGNFGSVRQGVYRMRKKQIDVAIK 42
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln)
amidotransferase subunit E, GatE {Pyrococcus abyssi
[TaxId: 29292]}
Length = 321
Score = 25.9 bits (56), Expect = 9.2
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 165 IIGYEIHQQLN 175
+G EIH+QL+
Sbjct: 12 KVGLEIHRQLD 22
Score = 25.9 bits (56), Expect = 9.2
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 348 IIGYEIHQQLN 358
+G EIH+QL+
Sbjct: 12 KVGLEIHRQLD 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.412
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,596,796
Number of extensions: 77220
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 58
Length of query: 410
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,213,086
Effective search space: 391826778
Effective search space used: 391826778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)