BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11240
(363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41516|TOP2A_RAT DNA topoisomerase 2-alpha OS=Rattus norvegicus GN=Top2a PE=2 SV=1
Length = 1526
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 140/180 (77%), Positives = 157/180 (87%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTSKEAKEYF+NM+RHRI FKYSG DDA I +AFSKK VD+RK WLT +ME+ R+
Sbjct: 613 GLGTSTSKEAKEYFANMKRHRIQFKYSGPEDDAAISLAFSKKQVDDRKEWLTNFMEDRRQ 672
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
RK +G+ EDYLY +TT +TY +F+NKELILFSN DNERSIPS+ DGLKPG RKVLFTC
Sbjct: 673 RKLLGLPEDYLYGQTTMYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCF 732
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVKVAQLAGSVAE S+YHHGE SLM TIINLAQNFVGSNN+NLLQPIGQFGT L
Sbjct: 733 KRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRL 792
Score = 179 bits (453), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/141 (60%), Positives = 109/141 (77%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
DY+EYHTDTTVKFV+ M+ +KL +AE GLHKVFKLQT+L +SM FD G L K+DT
Sbjct: 954 DYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTV 1013
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
IL++F+ +RL+YY RK++L G+LGAE+ KL NQARFI+EK DG + IEN+ KKE+I
Sbjct: 1014 LDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIK 1073
Query: 339 ELIKRKYDSDPVKSWKMKQNK 359
LI+R YDSDPVK+WK Q K
Sbjct: 1074 VLIQRGYDSDPVKAWKEAQQK 1094
>sp|O16140|TOP2_BOMMO DNA topoisomerase 2 OS=Bombyx mori GN=TOP2 PE=2 SV=1
Length = 1547
Score = 295 bits (756), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 137/180 (76%), Positives = 155/180 (86%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTSKEAKEYF NM+RHRI FKYSG DD HI +AFSKK D+RK WLT M+E +R
Sbjct: 623 GLGTSTSKEAKEYFQNMDRHRIRFKYSGPTDDHHIELAFSKKGADQRKEWLTNHMDEVKR 682
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
RKE+G+ E YLYTK TK +TY++FVN EL+LFSN DN RSIPS+ DGLKPG RKV+FTC+
Sbjct: 683 RKEIGLSERYLYTKETKTVTYSDFVNLELVLFSNGDNVRSIPSMIDGLKPGQRKVIFTCI 742
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVKVAQLAGSVAEHSAYHHGEQSL TI+NLAQN+VGSNNINLL+P GQFGT L
Sbjct: 743 KRNDKREVKVAQLAGSVAEHSAYHHGEQSLAMTIVNLAQNYVGSNNINLLEPRGQFGTRL 802
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/146 (55%), Positives = 111/146 (76%)
Query: 218 NDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDT 277
++Y+EY+TDTTV+FVV++ P KL + E +G+HKVFKLQTT++++ M AFD L K+D
Sbjct: 961 SEYREYNTDTTVRFVVSLLPGKLSEIEAEGIHKVFKLQTTISMTCMNAFDYNCCLEKYDK 1020
Query: 278 TNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMI 337
+IL+EFY +R++YY +RKDYLEG L AEA KL+NQARFI++KCD L IEN+K+K M+
Sbjct: 1021 VEEILREFYDLRVKYYVRRKDYLEGQLQAEADKLSNQARFILKKCDKGLVIENKKRKAMV 1080
Query: 338 AELIKRKYDSDPVKSWKMKQNKENAL 363
ELIKR Y DP+ WK + +K L
Sbjct: 1081 EELIKRGYAPDPIADWKKRASKIQGL 1106
>sp|P41515|TOP2A_CRIGR DNA topoisomerase 2-alpha OS=Cricetulus griseus GN=TOP2A PE=1 SV=1
Length = 1526
Score = 295 bits (754), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 139/180 (77%), Positives = 157/180 (87%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTSKEAKEYF++M+RHRI FKYSG DDA I +AFSKK VD+RK WLT +ME+ R+
Sbjct: 614 GLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSKKQVDDRKEWLTHFMEDRRQ 673
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
RK +G+ EDYLY +TT +TY +F+NKELILFSN DNERSIPS+ DGLKPG RKVLFTC
Sbjct: 674 RKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCF 733
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVKVAQLAGSVAE S+YHHGE SLM TIINLAQNFVGSNN+NLLQPIGQFGT L
Sbjct: 734 KRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRL 793
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 109/141 (77%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
DY+EYHTDTTVKFV+ M+ +KL +AE GLHKVFKLQT+L +SM FD G L K+DT
Sbjct: 955 DYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTV 1014
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
ILK+F+ +RL+YY RK++L G+LGAE+ KL NQARFI+EK DG + IEN+ KKE+I
Sbjct: 1015 LDILKDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1074
Query: 339 ELIKRKYDSDPVKSWKMKQNK 359
LI+R YDSDPVK+WK Q K
Sbjct: 1075 VLIQRGYDSDPVKAWKEAQQK 1095
>sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3
Length = 1531
Score = 294 bits (753), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 138/180 (76%), Positives = 157/180 (87%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTSKEAKEYF++M+RHRI FKYSG DDA I +AFSKK +D+RK WLT +ME+ R+
Sbjct: 615 GLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSKKQIDDRKEWLTNFMEDRRQ 674
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
RK +G+ EDYLY +TT +TY +F+NKELILFSN DNERSIPS+ DGLKPG RKVLFTC
Sbjct: 675 RKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCF 734
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVKVAQLAGSVAE S+YHHGE SLM TIINLAQNFVGSNN+NLLQPIGQFGT L
Sbjct: 735 KRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRL 794
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 109/141 (77%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
DY+EYHTDTTVKFVV M+ +KL +AE GLHKVFKLQT+L +SM FD G L K+DT
Sbjct: 956 DYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTV 1015
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
IL++F+ +RL+YY RK++L G+LGAE+ KL NQARFI+EK DG + IEN+ KKE+I
Sbjct: 1016 LDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1075
Query: 339 ELIKRKYDSDPVKSWKMKQNK 359
LI+R YDSDPVK+WK Q K
Sbjct: 1076 VLIQRGYDSDPVKAWKEAQQK 1096
>sp|Q01320|TOP2A_MOUSE DNA topoisomerase 2-alpha OS=Mus musculus GN=Top2a PE=1 SV=2
Length = 1528
Score = 294 bits (753), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 138/180 (76%), Positives = 157/180 (87%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTSKEAKEYF++M+RHRI FKYSG DDA I +AFSKK VD+RK WLT +ME+ R+
Sbjct: 614 GLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSKKQVDDRKEWLTNFMEDRRQ 673
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
RK +G+ EDYLY ++T +TY +F+NKELILFSN DNERSIPS+ DGLKPG RKVLFTC
Sbjct: 674 RKLLGLPEDYLYGQSTSYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCF 733
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVKVAQLAGSVAE S+YHHGE SLM TIINLAQNFVGSNN+NLLQPIGQFGT L
Sbjct: 734 KRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRL 793
Score = 177 bits (450), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 109/141 (77%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
DY+EYHTDTTVKFV+ M+ +KL +AE GLHKVFKLQ++L +SM FD G L K+DT
Sbjct: 955 DYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTV 1014
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
IL++F+ +RL+YY RK++L G+LGAE+ KL NQARFI+EK DG + IEN+ KKE+I
Sbjct: 1015 LDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIK 1074
Query: 339 ELIKRKYDSDPVKSWKMKQNK 359
LI+R YDSDPVK+WK Q K
Sbjct: 1075 VLIQRGYDSDPVKAWKEAQQK 1095
>sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A PE=2 SV=1
Length = 1533
Score = 294 bits (752), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 138/180 (76%), Positives = 157/180 (87%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTSKEAKEYF++M+RHRI FKYSG DDA I +AFSKK +D+RK WLT +ME+ R+
Sbjct: 615 GLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSKKQIDDRKEWLTHFMEDRRQ 674
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
RK +G+ EDYLY +TT +TY +F+NKELILFSN DNERSIPS+ DGLKPG RKVLFTC
Sbjct: 675 RKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCF 734
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVKVAQLAGSVAE S+YHHGE SLM TIINLAQNFVGSNN+NLLQPIGQFGT L
Sbjct: 735 KRNDKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRL 794
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 109/141 (77%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
DY+EYHTDTTVKFVV M+ +KL +AE GLHKVFKLQT+L +SM FD G L K+DT
Sbjct: 956 DYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTV 1015
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
IL++F+ +RL+YY RK++L G+LGAE+ KL NQARFI+EK DG + IEN+ KKE+I
Sbjct: 1016 LDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1075
Query: 339 ELIKRKYDSDPVKSWKMKQNK 359
LI+R YDSDPVK+WK Q K
Sbjct: 1076 VLIQRGYDSDPVKAWKEAQQK 1096
>sp|O42131|TOP2B_CHICK DNA topoisomerase 2-beta OS=Gallus gallus GN=TOP2B PE=2 SV=1
Length = 1627
Score = 291 bits (745), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 135/180 (75%), Positives = 156/180 (86%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTST+KEAKEYF++MERHRILF+Y+G DDA I +AFSKK +D+RK WLT +ME+ R+
Sbjct: 641 GLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQ 700
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
R+ G+ E +LY TK +TY +F+NKELILFSN DNERSIPSL DGLKPG RKVLFTC
Sbjct: 701 RRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGLKPGQRKVLFTCF 760
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVKVAQLAGSVAE SAYHHGEQ+LM TI+NLAQNFVGSNN+NLLQPIGQFGT L
Sbjct: 761 KRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTRL 820
Score = 174 bits (441), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 106/136 (77%)
Query: 218 NDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDT 277
+DYKEYHTDTTVKFVV M+ +KL +AE GLHKVFKLQT+L +SM FD G L K++T
Sbjct: 981 SDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYET 1040
Query: 278 TNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMI 337
ILKEF+ +RL YY+ RK++L G+LGAE+ KL NQARFI+EK G + IENR K+++I
Sbjct: 1041 VQDILKEFFDLRLHYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKRDLI 1100
Query: 338 AELIKRKYDSDPVKSW 353
L++R Y+SDPVK+W
Sbjct: 1101 QMLVQRGYESDPVKAW 1116
>sp|Q64511|TOP2B_MOUSE DNA topoisomerase 2-beta OS=Mus musculus GN=Top2b PE=1 SV=2
Length = 1612
Score = 290 bits (742), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/180 (75%), Positives = 155/180 (86%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTST+KEAKEYF++MERHRILF+Y+G DDA I +AFSKK +D+RK WLT +ME+ R+
Sbjct: 624 GLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQ 683
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
R+ G+ E +LY TK +TY +F+NKELILFSN DNERSIPSL DG KPG RKVLFTC
Sbjct: 684 RRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCF 743
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVKVAQLAGSVAE SAYHHGEQ+LM TI+NLAQNFVGSNNINLLQPIGQFGT L
Sbjct: 744 KRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRL 803
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 105/136 (77%)
Query: 218 NDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDT 277
+DYKEYHTDTTVKFVV M+ +KL +AE GLHKVFKLQTTL +SM FD G L K++T
Sbjct: 964 SDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYET 1023
Query: 278 TNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMI 337
ILKEF+ +RL YY RK++L G+LGAE+ KL NQARFI+EK G + IENR KK++I
Sbjct: 1024 VQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLI 1083
Query: 338 AELIKRKYDSDPVKSW 353
L++R Y+SDPVK+W
Sbjct: 1084 QMLVQRGYESDPVKAW 1099
>sp|Q64399|TOP2B_CRILO DNA topoisomerase 2-beta OS=Cricetulus longicaudatus GN=TOP2B PE=2
SV=1
Length = 1612
Score = 290 bits (742), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/180 (75%), Positives = 155/180 (86%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTST+KEAKEYF++MERHRILF+Y+G DDA I +AFSKK +D+RK WLT +ME+ R+
Sbjct: 624 GLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQ 683
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
R+ G+ E +LY TK +TY +F+NKELILFSN DNERSIPSL DG KPG RKVLFTC
Sbjct: 684 RRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCF 743
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVKVAQLAGSVAE SAYHHGEQ+LM TI+NLAQNFVGSNNINLLQPIGQFGT L
Sbjct: 744 KRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRL 803
Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 105/136 (77%)
Query: 218 NDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDT 277
+DYKEYHTDTTVKFVV M+ +KL +AE GLHKVFKLQTTL +SM FD G L K++T
Sbjct: 964 SDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYET 1023
Query: 278 TNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMI 337
ILKEF+ +RL YY RK++L G+LGAE+ KL NQARFI+EK G + IENR KK++I
Sbjct: 1024 VQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLI 1083
Query: 338 AELIKRKYDSDPVKSW 353
L++R Y+SDPV++W
Sbjct: 1084 QMLVQRGYESDPVRAW 1099
>sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B PE=1 SV=3
Length = 1626
Score = 290 bits (742), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 135/180 (75%), Positives = 155/180 (86%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTST+KEAKEYF++MERHRILF+Y+G DDA I +AFSKK +D+RK WLT +ME+ R+
Sbjct: 636 GLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQ 695
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
R+ G+ E +LY TK +TY +F+NKELILFSN DNERSIPSL DG KPG RKVLFTC
Sbjct: 696 RRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCF 755
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVKVAQLAGSVAE SAYHHGEQ+LM TI+NLAQNFVGSNNINLLQPIGQFGT L
Sbjct: 756 KRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRL 815
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/142 (61%), Positives = 108/142 (76%)
Query: 218 NDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDT 277
+DYKEYHTDTTVKFVV M+ +KL +AE GLHKVFKLQTTL +SM FD G L K++T
Sbjct: 976 SDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYET 1035
Query: 278 TNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMI 337
ILKEF+ +RL YY RK++L G+LGAE+ KL NQARFI+EK G + IENR KK++I
Sbjct: 1036 VQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLI 1095
Query: 338 AELIKRKYDSDPVKSWKMKQNK 359
L++R Y+SDPVK+WK Q K
Sbjct: 1096 QMLVQRGYESDPVKAWKEAQEK 1117
>sp|O42130|TOP2A_CHICK DNA topoisomerase 2-alpha OS=Gallus gallus GN=TOP2A PE=2 SV=2
Length = 1553
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/180 (76%), Positives = 152/180 (84%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTSKEAKEYF++M RHRI FKYSG DDA I +AFSKK V+ERK WLT +ME+ R+
Sbjct: 616 GLGTSTSKEAKEYFADMARHRIGFKYSGPEDDAAITLAFSKKKVEERKEWLTNFMEDRRQ 675
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
R G+ EDYLY K T +TY +F+NKEL+LFSN DNERSIPSL DGLKPG RKVLFTC
Sbjct: 676 RNVHGLPEDYLYGKDTNYLTYNDFINKELVLFSNSDNERSIPSLVDGLKPGQRKVLFTCF 735
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVK AQLAGSVAE S+YHHGE SLM TIINLAQNFVGSNN+NLLQPIGQFGT L
Sbjct: 736 KRNDKREVKGAQLAGSVAEMSSYHHGEASLMMTIINLAQNFVGSNNLNLLQPIGQFGTRL 795
Score = 181 bits (460), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/141 (63%), Positives = 108/141 (76%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
DYKEYHTDTTVKFVV MS +KL +AE GLHKVFKLQT L +SM FD G L K+++
Sbjct: 957 DYKEYHTDTTVKFVVKMSEEKLAEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKKYESP 1016
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
ILKEF+ +RL YY RK++L G+LGAE+ KL NQARFI+EK DG + IEN+ KKE+I
Sbjct: 1017 QDILKEFFELRLRYYGLRKEWLIGMLGAESAKLNNQARFILEKIDGKIVIENKPKKELIQ 1076
Query: 339 ELIKRKYDSDPVKSWKMKQNK 359
LI+R Y+SDPVK+WK QNK
Sbjct: 1077 VLIQRGYESDPVKAWKELQNK 1097
>sp|P15348|TOP2_DROME DNA topoisomerase 2 OS=Drosophila melanogaster GN=Top2 PE=1 SV=1
Length = 1447
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 134/180 (74%), Positives = 152/180 (84%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTSKEAKEYF +M+RHRILFKY G DD I MAFSKK ++ RK WLT M+E +R
Sbjct: 595 GLGTSTSKEAKEYFQDMDRHRILFKYDGSVDDESIVMAFSKKHIESRKVWLTNHMDEVKR 654
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
RKE+G+ E YLYTK TK+ITY +F+N EL+LFSN DNERSIPSL DGLKPG RKV+FTC
Sbjct: 655 RKELGLPERYLYTKGTKSITYADFINLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCF 714
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KRND+REVKVAQL+GSVAE SAYHHGE SL TI+NLAQNFVG+NNINLL+P GQFGT L
Sbjct: 715 KRNDKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRL 774
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 103/141 (73%), Gaps = 2/141 (1%)
Query: 218 NDYKEYHTDTTVKFVVTMSPDKLHK--AEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKF 275
++Y+EYHTDTTV+FV++ +P + + AE G ++VFKL TTL+ + M AFD+ L +F
Sbjct: 935 SEYREYHTDTTVRFVISFAPGEFERIHAEEGGFYRVFKLTTTLSTNQMHAFDQNNCLRRF 994
Query: 276 DTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKE 335
T ILKE+Y +R EYYA+R+D+L G L A+A +L++QARFI+EKC+ L +EN+++K
Sbjct: 995 PTAIDILKEYYKLRREYYARRRDFLVGQLTAQADRLSDQARFILEKCEKKLVVENKQRKA 1054
Query: 336 MIAELIKRKYDSDPVKSWKMK 356
M EL+KR Y DPVK W+ +
Sbjct: 1055 MCDELLKRGYRPDPVKEWQRR 1075
>sp|Q23670|TOP2_CAEEL Probable DNA topoisomerase 2 OS=Caenorhabditis elegans GN=K12D12.1
PE=3 SV=2
Length = 1520
Score = 277 bits (708), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 127/180 (70%), Positives = 150/180 (83%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTSKEAKEYF +M RHRI FKY+G +DD + MAFSKK ++ERK WL+ WM E +
Sbjct: 650 GLGTSTSKEAKEYFLDMVRHRIRFKYNGADDDNAVDMAFSKKKIEERKDWLSKWMREKKD 709
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
RK+ G+ E+YLY K T+ +T+ +FVN+EL+LFSN+DNERSIP L DG KPG RKVLF C
Sbjct: 710 RKQQGLAEEYLYNKDTRFVTFKDFVNRELVLFSNLDNERSIPCLVDGFKPGQRKVLFACF 769
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KR D+REVKVAQLAG+VAE SAYHHGEQSLM TI+NLAQ++VGSNNINLL PIGQFGT L
Sbjct: 770 KRADKREVKVAQLAGAVAEISAYHHGEQSLMGTIVNLAQDYVGSNNINLLLPIGQFGTRL 829
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 96/140 (68%), Gaps = 1/140 (0%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEM-DGLHKVFKLQTTLAISSMCAFDRYGVLTKFDT 277
DYKEYHTDTTVKFVV +SP KL + E LH+VFKLQ + + M FD G L + +
Sbjct: 991 DYKEYHTDTTVKFVVKLSPGKLRELERGQDLHQVFKLQAVINTTCMVLFDAAGCLRTYTS 1050
Query: 278 TNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMI 337
I +EFY R E Y +RK+YL GVL A++ +LTNQARFI+ K + ++ +EN+KK ++
Sbjct: 1051 PEAITQEFYDSRQEKYVQRKEYLLGVLQAQSKRLTNQARFILAKINNEIVLENKKKAAIV 1110
Query: 338 AELIKRKYDSDPVKSWKMKQ 357
LIK K+D+DPVK WK +Q
Sbjct: 1111 DVLIKMKFDADPVKKWKEEQ 1130
>sp|P41001|TOP2_PLAFK DNA topoisomerase 2 OS=Plasmodium falciparum (isolate K1 /
Thailand) GN=TOP2 PE=3 SV=1
Length = 1398
Score = 198 bits (503), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 99/179 (55%), Positives = 126/179 (70%), Gaps = 13/179 (7%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTST +E K+YFS+++ H+I+F ++GD D I MAFSKK +++RK WL ++
Sbjct: 651 GLGTSTDREFKQYFSDIKNHKIMFLWTGDRDGDSIDMAFSKKRIEDRKLWLQNFI----- 705
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
+G D+ K ++Y +FVNKELI +S D ERSIP++ DG KPG RKVL+ C
Sbjct: 706 ---LGSYVDH----KEKDLSYYDFVNKELIYYSRYDTERSIPNIMDGWKPGQRKVLYGCF 758
Query: 131 KRNDRREVKVAQLAGSVAEHSAY-HHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
KRN R E KVAQL G +AEHSAY HHGE SL TIIN+AQ FVGSNNIN L+P GQFG+
Sbjct: 759 KRNLRNECKVAQLVGYIAEHSAYHHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGS 817
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
DY + + + F + M P KL KAE +GL KVFKL++TL ++M FD L ++ T
Sbjct: 978 DYIDNSSHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTE 1037
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
ILKEF RL+ Y RK YL L E ++N+ +FI+ + +L + +KKK ++
Sbjct: 1038 LDILKEFCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNNELIVNKKKKKVLVE 1097
Query: 339 ELIKRKYDS 347
EL ++ YD
Sbjct: 1098 ELYRKGYDP 1106
>sp|Q01879|TOP2_PICGU DNA topoisomerase 2 OS=Meyerozyma guilliermondii (strain ATCC 6260
/ CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL
Y-324) GN=TOP2 PE=3 SV=3
Length = 1400
Score = 194 bits (493), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 116/178 (65%), Gaps = 12/178 (6%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTS E +EYF+ ++RH F D D +I MAFSKK DERK WL +
Sbjct: 661 GLGTSLESEGREYFAALDRHMKSFHALQDGDSQYIDMAFSKKKADERKDWLQAFRPGTHL 720
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
++ + I +EF+NKELILFS DN RSIPS+ DG KPG RKVL+ C
Sbjct: 721 DPQI------------REIPISEFINKELILFSMADNVRSIPSILDGFKPGQRKVLYGCF 768
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
KRN R E+KVAQL G ++EH+ YHHGE SL TI+ LAQNFVG+NN+NLLQPIG FG+
Sbjct: 769 KRNLRSEIKVAQLVGYISEHTGYHHGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGS 826
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
D +E H ++FVV +S +++ K+ GL + FKL +++++S+M AFD G + K+ +
Sbjct: 986 DMEEQH-GINIRFVVRLSKEEMDKSLRMGLLERFKLISSISLSNMVAFDPQGRIKKYSSA 1044
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
N+ILK++Y RLE Y +RKD + + +L+ QARFI + L I N+K+ EM+
Sbjct: 1045 NEILKDYYWARLELYQRRKDMMAENFQNQLTRLSEQARFIKLIIEKKLTIANKKRSEMVD 1104
Query: 339 ELIKRKY 345
+L K K+
Sbjct: 1105 DLKKLKF 1111
>sp|Q55BP5|TOP2_DICDI Probable DNA topoisomerase 2 OS=Dictyostelium discoideum GN=top2
PE=3 SV=1
Length = 1521
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/179 (54%), Positives = 124/179 (69%), Gaps = 14/179 (7%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYS-GDNDDAHIRMAFSKKLVDERKTWLTTWMEECR 69
GLGTST E KEYFS++ERH+I F++ G ND +I +AFSK D+RK W+ +E
Sbjct: 683 GLGTSTPGEGKEYFSDLERHKIDFEWDEGAND--NIELAFSKSRADDRKKWMAEHIEGT- 739
Query: 70 RRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTC 129
+L K +TY++F+NKEL+LFS D ERSIP++ DGLK RK L++C
Sbjct: 740 ----------FLEQFGVKKLTYSDFINKELVLFSIADCERSIPNIVDGLKTSHRKTLYSC 789
Query: 130 LKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
KRN ++E+KVAQL G V+EHSAYHHGE SL STI+ +AQ FVGSNNINLL P G +GT
Sbjct: 790 FKRNLKKEIKVAQLIGYVSEHSAYHHGEASLYSTIVGMAQEFVGSNNINLLNPAGSYGT 848
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 220 YKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTTN 279
Y Y +++T+ F++ D + + + KVFKL +T+ ++M FD G + +F TT
Sbjct: 1056 YTNYSSESTIHFII----DTIQPVDEINIEKVFKLVSTINETNMVVFDEEGRIQRFATTT 1111
Query: 280 QILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAE 339
+ + F+ +R+++Y RKD+L L E +L+N+ARFI+ + +L I N KK ++I +
Sbjct: 1112 ALQEHFFPLRIKHYQMRKDFLSERLSEEYSRLSNKARFILAVVNKELVISNVKKVDLINK 1171
Query: 340 LIKRKYD 346
L + K+D
Sbjct: 1172 LKEMKFD 1178
>sp|P30182|TOP2_ARATH DNA topoisomerase 2 OS=Arabidopsis thaliana GN=TOP2 PE=2 SV=2
Length = 1473
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/178 (53%), Positives = 125/178 (70%), Gaps = 12/178 (6%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTST++E KEYFSN+ H+ F + + D I +AFSKK ++ RK WL+++
Sbjct: 616 GLGTSTAEEGKEYFSNLGLHKKDFVWEDEQDGEAIELAFSKKKIEARKNWLSSY------ 669
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
+ ++L + K +TY++FVNKELILFS D +RSIPS+ DGLKPG RK+LF
Sbjct: 670 -----VPGNHLDQRQPK-VTYSDFVNKELILFSMADLQRSIPSMVDGLKPGQRKILFVAF 723
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
K+ R+E+KVAQL G V+ SAYHHGEQSL S II +AQ++VGSNNINLL P GQFGT
Sbjct: 724 KKIARKEMKVAQLVGYVSLLSAYHHGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGT 781
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 83/134 (61%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
D K Y+ + +V F + +S + + A +G K FKL TT+A S+M FD+ GV+ K+ T
Sbjct: 946 DVKAYNDEKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTP 1005
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
QIL+EF+ +R EYY KRK+ + + E LKL N+ARFI+ G++ + RKK +++
Sbjct: 1006 EQILEEFFDLRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVE 1065
Query: 339 ELIKRKYDSDPVKS 352
+L ++ + P K+
Sbjct: 1066 DLRQKGFTPFPRKA 1079
>sp|P06786|TOP2_YEAST DNA topoisomerase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP2 PE=1 SV=2
Length = 1428
Score = 188 bits (478), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 121/178 (67%), Gaps = 12/178 (6%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTS ++E +EYFSN++RH +F ND +I +AFSKK D+RK WL R
Sbjct: 604 GLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWL--------R 655
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
+ E G D T K I ++F+NKELILFS DN RSIP++ DG KPG RKVL+ C
Sbjct: 656 QYEPGTVLD----PTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCF 711
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
K+N + E+KVAQLA V+E +AYHHGEQSL TII LAQNFVGSNNI LL P G FGT
Sbjct: 712 KKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGT 769
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 78/122 (63%), Gaps = 1/122 (0%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
D +E H D +KF++T+SP+++ K G ++ FKL + +++ +M AFD +G + K+++
Sbjct: 932 DMEEQHDDN-IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSV 990
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
N+IL EFY VRLEYY KRKD++ L E K + Q +FI + +L + N+ + +I
Sbjct: 991 NEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQ 1050
Query: 339 EL 340
EL
Sbjct: 1051 EL 1052
>sp|P90520|TOP2M_DICDI DNA topoisomerase 2, mitochondrial OS=Dictyostelium discoideum
GN=top2mt PE=2 SV=2
Length = 1284
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/180 (55%), Positives = 123/180 (68%), Gaps = 13/180 (7%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTS EAKEYFSN+++H I F + GD D I+MAF+K L R+ W+ +
Sbjct: 723 GLGTSTSAEAKEYFSNLDKHVIKFIW-GDEADDLIKMAFAKDLSSLRQRWI--------K 773
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
+M G D+ + K ITY +F+NKELI +S N RSIPSL DGLKPG RK+LF
Sbjct: 774 ETDMSQGIDH----SIKEITYPDFINKELIHYSWAANLRSIPSLIDGLKPGQRKILFASF 829
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
KR E+KV+QL+G VAE ++YHHGEQSL STI+ +A NFVGSNN+ LL P GQFGT L
Sbjct: 830 KRRLTNEIKVSQLSGYVAEQTSYHHGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRL 889
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 220 YKEYHTDTTVKFVVTMSPDKLHKAE---MDGLHKVFKLQTTLAISSMCAFDRYGVLTKFD 276
++E +T+ +V F + ++ ++L + E + L K+FKL +L C FD + K +
Sbjct: 1045 FQESNTENSVHFTILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTC-FDENSKIQKLE 1103
Query: 277 TTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEM 336
+ +I+ +FY VRL++Y KR++YL L + +LT +F+ G L+I+ R K+++
Sbjct: 1104 SVEEIIDQFYKVRLQFYGKRREYLLKSLDNQIKRLTTTIQFLEVIASGKLKIQGRSKQDL 1163
Query: 337 IAEL 340
I EL
Sbjct: 1164 IKEL 1167
>sp|P87078|TOP2_CANAX DNA topoisomerase 2 OS=Candida albicans GN=TOP2 PE=3 SV=1
Length = 1461
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 117/178 (65%), Gaps = 12/178 (6%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTST EA+EYF+ ++RH F D +I +AFSKK DERK WL ++
Sbjct: 664 GLGTSTPMEAREYFTALDRHLKRFHALQGEDKDYIDLAFSKKKADERKEWLQGFLPGTHL 723
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
E+ I ++F+NKE ILFS DN RSIPS+ DG KPG RKVL+ C
Sbjct: 724 DPEI------------TEIPISDFINKEFILFSMSDNVRSIPSVLDGFKPGQRKVLYGCF 771
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
K+ R E+KVAQLAG V+E++ YHHGEQSL+ TII LAQNFVGSNNIN+L+P G FG+
Sbjct: 772 KKKLRSEIKVAQLAGYVSENTGYHHGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGS 829
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 90/139 (64%), Gaps = 6/139 (4%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
D +E+HT T+++FVV ++ ++ K+ GL + FKL ++L++++M AFD G + K++
Sbjct: 991 DMEEHHT-TSIRFVVKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDV 1049
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
+I+K+FY VRLEYY KRKDY+ L + L L+ QARFI + L + N+KKK+++A
Sbjct: 1050 LEIIKDFYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQLVA 1109
Query: 339 ELIKRKY-----DSDPVKS 352
L + + D P+KS
Sbjct: 1110 LLEEHNFTKFSKDGKPIKS 1128
>sp|P08096|TOP2_SCHPO DNA topoisomerase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=top2 PE=1 SV=2
Length = 1485
Score = 181 bits (459), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/178 (53%), Positives = 114/178 (64%), Gaps = 12/178 (6%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTS + K YFS+++RH F + D I MAF+KK D RK WL T+
Sbjct: 657 GLGTSDHDDMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEWLRTYRP---- 712
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
GI DY T I +F+N+ELI FS DN RSIPS+ DGLKPG RKV++ C
Sbjct: 713 ----GIYMDY----TQPQIPIDDFINRELIQFSMADNIRSIPSVVDGLKPGQRKVVYYCF 764
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
KRN E KV++LAG VA +AYHHGE S+ TI+NLAQNFVGSNNINLL P GQFGT
Sbjct: 765 KRNLVHETKVSRLAGYVASETAYHHGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGT 822
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
DY+ +H + V F VT++ + +A + L FKL T A S+M AFD G + K+D+
Sbjct: 985 DYESHHGEGNVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSV 1044
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
IL EFY VRL Y +RK+++ L + +NQARFI +G+L + +KKK++I
Sbjct: 1045 EDILTEFYEVRLRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSKKKKKDLIV 1104
Query: 339 ELIKRKYD--SDPVKSWKMKQNKENAL 363
EL ++K+ S P K + ENAL
Sbjct: 1105 ELKEKKFQPISKPKKGHLVDLEVENAL 1131
>sp|P34534|TOP2M_CAEEL Putative DNA topoisomerase 2, mitochondrial OS=Caenorhabditis
elegans GN=R05D3.12 PE=3 SV=5
Length = 1170
Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 121/179 (67%), Gaps = 12/179 (6%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTS EA+EYFS+++ H + FKY+G DD IRMAF + DERK W+ RR
Sbjct: 633 GLGTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKSDERKEWI-------RR 685
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
+ ED T+ I+Y EFV+ +L+ F +D +RSIPSL DGLKP RK+L+T L
Sbjct: 686 SENEITNEDDGKTE----ISYQEFVDGQLMQFGMVDLKRSIPSLIDGLKPSQRKILWTLL 741
Query: 131 KRNDRR-EVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
D E+KV+QLAG+VA +YHHGE+SL+ TII + Q F GS+N+ LLQPIGQFGT
Sbjct: 742 NNMDESTEIKVSQLAGAVAHRQSYHHGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGT 800
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 30/208 (14%)
Query: 171 FVGSNNINLLQPIGQFGTFLFIFESTNLSGAVVNALDFGSGGWR-------------FES 217
F+ S I L++P E N S + ++ G W
Sbjct: 916 FISSGKIQLIRP-----------ERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPV 964
Query: 218 NDYKEYHTDTTVKFVVTMSPDK----LHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLT 273
++ E HT+ V F +T+ K L K+ D L+ FKL+T+L + FDR G L
Sbjct: 965 LEFSERHTEKRVHFRITLDRKKSSRFLQKSNSDLLN-YFKLRTSLT-ENRVLFDRNGELK 1022
Query: 274 KFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKK 333
+F ++I EF+ VR + Y KR + A+ + + NQ FI +G + I + +
Sbjct: 1023 EFGNISEIAAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGR 1082
Query: 334 KEMIAELIKRKYDSDPVKSWKMKQNKEN 361
++ +L + + DP+ + K N
Sbjct: 1083 NQLEEKLQEMGFRVDPMATIAKNSKKAN 1110
>sp|O93794|TOP2_CANGA DNA topoisomerase 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TOP2 PE=3 SV=2
Length = 1406
Score = 177 bits (450), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 117/178 (65%), Gaps = 12/178 (6%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTSTS E EYFSN++ H F +D I +AFSKK D+RK WL R
Sbjct: 602 GLGTSTSPEIIEYFSNLDTHLKKFHALQGDDKDLIDLAFSKKKADDRKEWL--------R 653
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
+ E G D T I ++F+NKELILFS DN RSIPS+ DG KPG RKVL+TC
Sbjct: 654 QYEPGTVLD----PTLNEIPISDFINKELILFSLADNVRSIPSVLDGFKPGQRKVLYTCF 709
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
K+N E KVA LA +V++++AYHHGEQ+L+ TII +AQNFVG+NNI L+P G FGT
Sbjct: 710 KKNLTTEKKVANLAPAVSDYTAYHHGEQALVQTIIGMAQNFVGTNNIYFLKPNGAFGT 767
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
D +E H +T +KF++ ++ +++ K G ++ FKL + +++ +M AFD G + K+D
Sbjct: 930 DMEEQHAET-IKFIIKLTDEEMTKTRKLGFYERFKLISPISLQNMVAFDYRGKIKKYDHV 988
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
++ILK+FY VRLEYY KRKDY+ G L EA KL+ Q +FI D L + N+ KK++I+
Sbjct: 989 HEILKDFYEVRLEYYQKRKDYMTGRLQWEAEKLSFQVKFIKMIIDKSLIVTNKPKKQLIS 1048
Query: 339 EL 340
EL
Sbjct: 1049 EL 1050
>sp|Q9Y8G8|TOP2_PENCH DNA topoisomerase 2 OS=Penicillium chrysogenum GN=TOP2 PE=3 SV=1
Length = 1587
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 121/180 (67%), Gaps = 12/180 (6%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTST+++A+ YF +++RH F DN+ I +AFSKK DERK + R
Sbjct: 655 GLGTSTTEDAQIYFRDLDRHLKEFHTMQDNEVELIELAFSKKKADERKGNV--------R 706
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
+ G D+ K ITYT+F+NKELILFS DN RSIPS+ DGLKPG RKVL+TC
Sbjct: 707 QFRPGTFLDHSVDK----ITYTDFINKELILFSMADNIRSIPSVVDGLKPGQRKVLYTCF 762
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
+RN ++++KV +LAG V+ +AY HGE SL TI+ LAQ FVGSNN+N L+P G FG+ L
Sbjct: 763 RRNLKKDMKVVELAGHVSGTTAYQHGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRL 822
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
DYK+Y+T T V FV+ M + A +GL + FKL T+ +++ AFD + TK+ +
Sbjct: 982 DYKDYNTHTKVHFVIQMDEKHMKTAIAEGLEEKFKLSKTMTTTNLVAFDPERI-TKYASV 1040
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
I+KEFYAVRL+YY +RK Y + E KL+NQARF+ DG L I +KK ++A
Sbjct: 1041 EDIMKEFYAVRLKYYERRKQYQLSEMQKELDKLSNQARFVQMIIDGKLVISKKKKAVLVA 1100
Query: 339 ELIKRKYDSDP 349
EL ++ + P
Sbjct: 1101 ELKEKDFKPFP 1111
>sp|O24308|TOP2_PEA DNA topoisomerase 2 OS=Pisum sativum GN=TOP2 PE=2 SV=1
Length = 1462
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 105/178 (58%), Gaps = 31/178 (17%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTST +E +EYFS++ RHR F + + D I +AFSKK + RK W+ R
Sbjct: 602 GLGTSTPQEGREYFSDLGRHRKDFIWDDELDGNAIELAFSKKKAEGRKIWM--------R 653
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
E G D+ K I Y +FVNKELILFS D LF
Sbjct: 654 NFEPGTCRDH----EAKLINYKDFVNKELILFSRAD-------------------LFGSF 690
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
K+ +E+KVAQ G V+EHSAYHHGEQSL STII +AQ+FVGSNNINLL+P GQFGT
Sbjct: 691 KKKLYKEIKVAQFIGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLKPNGQFGT 748
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 1/133 (0%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
D+++ D V + M P+K+ +GL K FKL +T++ S+M FD G KFDT
Sbjct: 913 DFRQNGDDAIVDIEIKMKPEKIATILQEGLFKKFKLTSTISTSNMHLFDAEGN-KKFDTP 971
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
QIL+EF+ +RL+YY K K+Y+ G L L L N+ RFI+ +G++ + NRKK E++
Sbjct: 972 EQILEEFFPLRLDYYEKSKEYILGNLNRLLLILDNKVRFILGVVNGEIIVSNRKKAELLI 1031
Query: 339 ELIKRKYDSDPVK 351
EL ++ + P K
Sbjct: 1032 ELKEKGFTPMPRK 1044
>sp|O61078|TOP2_LEICH DNA topoisomerase 2 OS=Leishmania chagasi GN=TOP2 PE=3 SV=2
Length = 1236
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 110/179 (61%), Gaps = 12/179 (6%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHI-RMAFSKKLVDERKTWLTTWMEECR 69
GLGTST+ E KEYF++ME++ + + + D D + F V+ RK W+T
Sbjct: 595 GLGTSTTAEGKEYFADMEKN--IMQLTVDARDHQLLDSVFDAAEVEWRKEWMT------- 645
Query: 70 RRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTC 129
K + ++ K +T EFV+KE++ F+ + N R+IP DGLKP RK+L+
Sbjct: 646 --KANAFQGEVDIDRSKKTLTIPEFVHKEMVHFALVGNARAIPHCVDGLKPSQRKILWAM 703
Query: 130 LKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
L+R++ KVAQL+G ++E SA+HHGE SL TI+ +AQNF G NNINLL P GQFG+
Sbjct: 704 LRRHNSEASKVAQLSGYISEASAFHHGEASLQETIVKMAQNFTGGNNINLLVPEGQFGS 762
>sp|P27570|TOP2_CRIFA DNA topoisomerase 2 OS=Crithidia fasciculata GN=TOP2 PE=3 SV=1
Length = 1239
Score = 141 bits (356), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 107/178 (60%), Gaps = 10/178 (5%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTST+ E KEYF++MER+ ++ D + F V+ RK W++
Sbjct: 595 GLGTSTTAEGKEYFADMERN-VMRLVVEPKDHRLLDSVFDSAEVEWRKEWMS-------- 645
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
K + ++ K +T +FV+KE++ F+ + N R+IP DGLKP RK+L+ L
Sbjct: 646 -KANAFQGEVDIDRSKKLLTIGDFVHKEMVHFALVGNARAIPHCVDGLKPSQRKILWAML 704
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
KR+ KVAQL+G ++E S++HHGE SL TI+ +AQNF G NNINLL P GQFG+
Sbjct: 705 KRHSSEAAKVAQLSGYISEVSSFHHGEASLQETIVKMAQNFTGGNNINLLVPEGQFGS 762
>sp|P12531|TOP2_TRYBB DNA topoisomerase 2 OS=Trypanosoma brucei brucei GN=TOP2 PE=3 SV=1
Length = 1221
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 14/180 (7%)
Query: 11 GLGTSTSKEAKEYFSNMERH--RILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEEC 68
GLGTST+ E KEYF +ME+H R+L S D + F + V+ RK W+T
Sbjct: 591 GLGTSTTAEGKEYFKDMEKHTMRLLVDRS---DHKLLDNVFDSQEVEWRKDWMT------ 641
Query: 69 RRRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFT 128
K + ++ K +T T+FV+KE++ F+ + N R++ DGLKP RK+++
Sbjct: 642 ---KANAFTGEVDIDRSKKMLTVTDFVHKEMVHFALVGNARALAHSVDGLKPSQRKIIWA 698
Query: 129 CLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
++R+ KVAQL+G ++E SA+HHGE SL T+I +AQ+F G NN+NLL P GQFG+
Sbjct: 699 LMRRSGNEAAKVAQLSGYISEASAFHHGETSLQETMIKMAQSFTGGNNVNLLVPEGQFGS 758
>sp|P30190|TOP2_TRYCR DNA topoisomerase 2 OS=Trypanosoma cruzi GN=TOP2 PE=3 SV=1
Length = 1232
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 10/178 (5%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
LGTST+ E KEYF +M++H + ND + F + V+ RK W+T
Sbjct: 591 ALGTSTTAEGKEYFKDMDKHTMRLVVE-RNDHKLLDSVFDSQEVEWRKDWMT-------- 641
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
K + ++ K +T +FV+KE++ F+ N R++ DGLKP RK+L+ +
Sbjct: 642 -KANAYTGEVDIDRSKKTLTVPDFVHKEMVHFALAGNARALAHAVDGLKPSQRKILWAIM 700
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
+R+ KVAQL+G ++E SA+HHGE SL TII +AQNF G NNINLL P GQFG+
Sbjct: 701 RRSGNESAKVAQLSGYISEVSAFHHGEMSLQETIIKMAQNFTGGNNINLLIPEGQFGS 758
>sp|Q5UQE6|TOP2_MIMIV DNA topoisomerase 2 OS=Acanthamoeba polyphaga mimivirus GN=TOP2
PE=3 SV=1
Length = 1263
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 95/145 (65%), Gaps = 13/145 (8%)
Query: 47 MAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMD 106
+AF+ D+RK W+ T+ + +YL + K I+Y +F++KELI FS D
Sbjct: 685 LAFAGGREDDRKIWINTYNPD-----------NYL-DPSKKRISYYDFIHKELITFSVDD 732
Query: 107 NERSIPSLCDGLKPGSRKVLFTCLKRND-RREVKVAQLAGSVAEHSAYHHGEQSLMSTII 165
RS+P+L DG KP RKV + +++N ++E+KV+ L G V+ + YHHG+QSL STI+
Sbjct: 733 VLRSVPNLMDGFKPSHRKVFYGSVEKNIYKQEIKVSDLTGFVSNMTKYHHGDQSLSSTIV 792
Query: 166 NLAQNFVGSNNINLLQPIGQFGTFL 190
+AQN+VGSNN+NLL P+G FG+ L
Sbjct: 793 GMAQNYVGSNNLNLLMPLGMFGSRL 817
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 220 YKEYHTDTTVKFVVTMSPDKLHKAEMDG-LHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
Y E TD + F + P KL G L KL L +++M F+ G + K+DT
Sbjct: 1034 YSEDCTDIRISFTIVFHPGKLDTLIKSGKLDTGLKLVKPLNLTNMHLFNEKGKIKKYDTY 1093
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRI----ENRKKK 334
IL+ F VRL Y KRKDYL G E L + +FI +G + I +++KK+
Sbjct: 1094 GAILRNFVKVRLNLYQKRKDYLLGKWKKEMDILKWKVKFIEYVIEGKIVIFKNGKSKKKE 1153
Query: 335 EMIAEL 340
E++ L
Sbjct: 1154 EVLKAL 1159
>sp|Q9QSK1|TOP2_IIV6 DNA topoisomerase 2 OS=Invertebrate iridescent virus 6 GN=TOP2 PE=3
SV=1
Length = 1132
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 100/182 (54%), Gaps = 15/182 (8%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRM--AFSKKLVDERKTWLTTWMEEC 68
GLGT+ ++ + F + ++F +D+AH M AF + DERK WL +
Sbjct: 624 GLGTTKHEDVPKIFG---KKMVVFNI---DDNAHENMEKAFKDEEADERKEWLKQYNPNA 677
Query: 69 RRRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFT 128
R D + + F+N+ELI FS D +RS+P L DGLK RKV+F
Sbjct: 678 RTF-------DLDSPNKILQLNISTFINEELIKFSIEDCKRSLPHLIDGLKESQRKVIFG 730
Query: 129 CLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
+ N + +KVAQL VA+ + Y HGEQ+L TII +AQ FVG+NNI LL+ GQFGT
Sbjct: 731 LKQWNGKNNIKVAQLGAFVAQKTDYKHGEQNLFDTIIKMAQTFVGANNIPLLEEDGQFGT 790
Query: 189 FL 190
L
Sbjct: 791 RL 792
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 223 YHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTTNQIL 282
Y TTV F ++ H+ ++ L KL++ + S+M FD G + K++T N I+
Sbjct: 957 YSEVTTVNFKISSE----HELTIENL----KLRSYIHTSNMVMFDHEGKIHKYETLNGIM 1008
Query: 283 KEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIK 342
+ F R++ Y KR+ Y+ L N+ RF+ + + ++I ++ + + +L+
Sbjct: 1009 QRFCKERIKIYEKRRQYMLQKLNKSLTISENKKRFMEDVMNQKIKILLQEDEVVHQQLLD 1068
Query: 343 RKYDSD 348
Y D
Sbjct: 1069 MNYYKD 1074
>sp|Q196X4|TOP2_IIV3 DNA topoisomerase 2 OS=Invertebrate iridescent virus 3 GN=IIV3-086L
PE=3 SV=1
Length = 1113
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 27/190 (14%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWL-------TT 63
GLGT + +F + +++ + + DA + F + +ERK WL +
Sbjct: 606 GLGTIGPADVAAFFGS----KVVRYHYDEATDAAVNSVFKDENANERKEWLGRFNPRVSQ 661
Query: 64 WMEECRRRKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSR 123
W + R + + ++F++ E+I FS D RS+ S DG K R
Sbjct: 662 WCLDHHREAVIDL-------------KISDFMHHEMIKFSYEDCRRSLASCIDGFKESQR 708
Query: 124 KVLFTCLKR---NDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLL 180
K+++ K+ N +KVAQL+G VAE + Y HGEQ+L TI+ AQ+FVG+NN+ LL
Sbjct: 709 KIIYAVRKKFRSNSTEFIKVAQLSGYVAEQTDYKHGEQNLCETIVKFAQDFVGANNVQLL 768
Query: 181 QPIGQFGTFL 190
+P GQFGT L
Sbjct: 769 EPDGQFGTRL 778
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 262 SMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDY 299
+M FDR V+TK+DT IL ++ RL +Y RK++
Sbjct: 966 NMVLFDRENVITKYDTIGDILDHYFQTRLAFYKVRKNH 1003
>sp|P0C9C2|TOP2_ASFK5 DNA topoisomerase 2 OS=African swine fever virus (isolate
Pig/Kenya/KEN-50/1950) GN=Ken-124 PE=3 SV=1
Length = 1192
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 108 ERSIPSLCDGLKPGSRKVL---FTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTI 164
ER IP+ DG+ RK+L C N+R E KV Q G VA+H YHHG+ SL ++I
Sbjct: 704 ERQIPNFLDGMTRARRKILAGGLKCFASNNR-ERKVFQFGGYVADHMFYHHGDMSLNTSI 762
Query: 165 INLAQNFVGSNNI-NLLQPIGQFGT 188
I AQ + GS+++ + IG FG+
Sbjct: 763 IKAAQYYPGSSHLYPVFIGIGSFGS 787
>sp|P34203|TOP2_ASFM2 DNA topoisomerase 2 OS=African swine fever virus (isolate
Tick/Malawi/Lil 20-1/1983) GN=Mal-120 PE=3 SV=1
Length = 1191
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 108 ERSIPSLCDGLKPGSRKVL---FTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTI 164
ER IP+ DG+ RK+L C N+R E KV Q G VA+H YHHG+ SL ++I
Sbjct: 703 ERQIPNFLDGMTRARRKILAGGLKCFASNNR-ERKVFQFGGYVADHMFYHHGDMSLNTSI 761
Query: 165 INLAQNFVGSNNI-NLLQPIGQFGT 188
I AQ + GS+++ + IG FG+
Sbjct: 762 IKAAQYYPGSSHLYPVFIGIGSFGS 786
>sp|Q00942|TOP2_ASFB7 DNA topoisomerase 2 OS=African swine fever virus (strain Badajoz
1971 Vero-adapted) GN=TOP PE=3 SV=1
Length = 1192
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 108 ERSIPSLCDGLKPGSRKVL---FTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTI 164
ER IP+ DG+ RK+L C N+R E KV Q G VA+H YHHG+ SL ++I
Sbjct: 704 ERQIPNFLDGMTRARRKILAGGVKCFASNNR-ERKVFQFGGYVADHMFYHHGDMSLNTSI 762
Query: 165 INLAQNFVGSNNI-NLLQPIGQFGT 188
I AQ + GS+++ + IG FG+
Sbjct: 763 IKAAQYYPGSSHLYPVFIGIGSFGS 787
>sp|P0C9C0|TOP2_ASFP4 DNA topoisomerase 2 OS=African swine fever virus (isolate
Tick/South Africa/Pretoriuskop Pr4/1996) GN=Pret-124
PE=3 SV=1
Length = 1192
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 108 ERSIPSLCDGLKPGSRKVL---FTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTI 164
ER IP+ DG+ RK+L C N+R E KV Q G VA+H YHHG+ SL ++I
Sbjct: 704 ERQIPNFLDGMTRARRKILAGGVKCFASNNR-ERKVFQFGGYVADHMFYHHGDMSLNTSI 762
Query: 165 INLAQNFVGSNNI-NLLQPIGQFGT 188
I AQ + GS+++ + IG FG+
Sbjct: 763 IKAAQYYPGSSHLYPVFIGIGSFGS 787
>sp|P0C9C1|TOP2_ASFWA DNA topoisomerase 2 OS=African swine fever virus (isolate
Warthog/Namibia/Wart80/1980) GN=War-122 PE=3 SV=1
Length = 1192
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 108 ERSIPSLCDGLKPGSRKVL---FTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTI 164
ER IP+ DG+ RK+L C N+R E KV Q G VA+H YHHG+ SL ++I
Sbjct: 704 ERQIPNFLDGMTRARRKILAGGVKCFASNNR-ERKVFQFGGYVADHMFYHHGDMSLNTSI 762
Query: 165 INLAQNFVGSNNI-NLLQPIGQFGT 188
I AQ + GS+++ + IG FG+
Sbjct: 763 IKAAQYYPGSSHLYPVFIGIGSFGS 787
>sp|P07065|TOP5_BPT4 DNA topoisomerase medium subunit OS=Enterobacteria phage T4 GN=52
PE=3 SV=2
Length = 442
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCL---KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTII 165
R+IP++ DG KP R V+ L + N + K+A +AG VA+ YHHGE S
Sbjct: 27 RAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVAD-LGYHHGENSAQDAGA 85
Query: 166 NLAQNFVGSNNINLLQPIGQFGT 188
+A + +NN LL G FG+
Sbjct: 86 LMANTW--NNNFPLLDGQGNFGS 106
>sp|C5CHA8|GYRA_KOSOT DNA gyrase subunit A OS=Kosmotoga olearia (strain TBF 19.5.1)
GN=gyrA PE=3 SV=1
Length = 812
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLK---RNDRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R+IP + DGLKP RK+LF L+ R+++ K A++ G V +H HG+ ++ +
Sbjct: 29 RAIPDVRDGLKPVQRKILFGMLELGLRHNQSYKKSARIVGEV--MGKFHPHGDMAIYDAL 86
Query: 165 INLAQNFVGSNNINLLQPIGQFGTF 189
+ +AQ F S L+Q G FG+
Sbjct: 87 VRMAQPF--SMRYPLIQGQGNFGSI 109
>sp|O51396|GYRA_BORBU DNA gyrase subunit A OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=gyrA PE=1 SV=1
Length = 810
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLK---RNDRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DGLKP R++L++ + R+D+ K ++ G V YH HG+QS+ +
Sbjct: 34 RALPDVRDGLKPVHRRILYSMYEMGLRSDKAFKKAGRIVGDVL--GKYHPHGDQSIYDAL 91
Query: 165 INLAQNFVGSNNINLLQPIGQFGTF 189
+ LAQ+F S +++ G FG+
Sbjct: 92 VRLAQDF--SLRYPVIRGQGNFGSI 114
>sp|B0S912|GYRA_LEPBA DNA gyrase subunit A OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=gyrA PE=3 SV=1
Length = 843
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLK---RNDRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DGLKP R+VL + R+DR VK A++ G V + YH HG+ ++ T+
Sbjct: 59 RALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKSAKIVGEVIGN--YHPHGDSAVYETM 116
Query: 165 INLAQNFVGSNNINLLQPIGQFGT 188
+ +AQ F S L+ G FG+
Sbjct: 117 VRMAQTF--SMRETLIDGQGNFGS 138
>sp|B2S0D7|GYRA_BORHD DNA gyrase subunit A OS=Borrelia hermsii (strain DAH) GN=gyrA PE=3
SV=1
Length = 810
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 16/89 (17%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLK---RNDRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DGLKP R++L++ + R D+ K ++ G V YH HG+QS+ +
Sbjct: 34 RALPDVRDGLKPVHRRILYSMHEMGLRADKAFKKAGRIVGDVL--GKYHPHGDQSIYEAL 91
Query: 165 INLAQNFVGSNNINLLQPI----GQFGTF 189
+ LAQ+F +L PI G FG+
Sbjct: 92 VRLAQDF------SLRYPIVIGQGNFGSI 114
>sp|P43700|GYRA_HAEIN DNA gyrase subunit A OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=gyrA PE=3 SV=1
Length = 880
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLKRN---DRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DGLKP R+VLF+ + +++ VK A++ G V YH HG+ ++ TI
Sbjct: 33 RALPDVRDGLKPVHRRVLFSMDREGNTANKKYVKSARVVGDVI--GKYHPHGDSAVYDTI 90
Query: 165 INLAQNFVGSNNINLLQPIGQFGTF 189
+ +AQ F S L+ G FG+
Sbjct: 91 VRMAQPF--SLRYMLVDGQGNFGSI 113
>sp|Q57532|GYRA_MYCLE DNA gyrase subunit A OS=Mycobacterium leprae (strain TN) GN=gyrA
PE=3 SV=2
Length = 1273
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSA-YH-HGEQSLMSTIIN 166
R++P + DGLKP R+VL+ L R + A+ A SVAE YH HG+ S+ T++
Sbjct: 40 RALPEVRDGLKPVHRRVLYAMLDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVR 99
Query: 167 LAQNFVGSNNINLLQPIGQFGT 188
+AQ + S L+ G FG+
Sbjct: 100 MAQPW--SLRYPLVDGQGNFGS 119
>sp|O83051|GYRA_TREPA DNA gyrase subunit A OS=Treponema pallidum (strain Nichols) GN=gyrA
PE=3 SV=1
Length = 813
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLKRNDR---REVKVAQLAGSVAEHSAYHHGEQSLMSTII 165
R++P + DGLKP R++L+ ++ R K A++ G V S + HG+ S+ ++
Sbjct: 36 RALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCAKIVGDVL-GSFHPHGDASVYDALV 94
Query: 166 NLAQNFVGSNNINLLQPIGQFGTF 189
L Q+F S ++ P G FGT
Sbjct: 95 RLGQDF--SLRYPVIHPQGNFGTI 116
>sp|O54478|PARC_CAUCR DNA topoisomerase 4 subunit A OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=parC PE=3 SV=2
Length = 759
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 109 RSIPSLCDGLKPGSRKVLFTC--LKRN-DRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DGLKP R+VL+ ++ N D K A++ G V + +H HG+ S+ +
Sbjct: 42 RALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKCAKVVGEVMGN--FHPHGDASIYDAL 99
Query: 165 INLAQNFVGSNNINLLQPIGQFGTF 189
+ LAQ F S I L++ G FG
Sbjct: 100 VRLAQEF--SQRIPLVEGQGNFGNI 122
>sp|P48354|GYRA_MYCS2 DNA gyrase subunit A OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=gyrA PE=3 SV=1
Length = 842
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSA-YH-HGEQSLMSTIIN 166
R++P + DGLKP R+VL+ R + A+ A SVAE YH HG+ S+ T++
Sbjct: 40 RALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVR 99
Query: 167 LAQNFVGSNNINLLQPIGQFGT 188
+AQ + S L+ G FG+
Sbjct: 100 MAQPW--SLRYPLVDGQGNFGS 119
>sp|Q9PR63|GYRA_UREPA DNA gyrase subunit A OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=gyrA PE=3 SV=1
Length = 840
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLKR---NDRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DG KP R+ LF + +D+ K A+ G V YH HG+Q++ TI
Sbjct: 49 RALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSARWVGDVI--GKYHPHGDQAVYQTI 106
Query: 165 INLAQNFVGSNNINLLQPIGQFGTF 189
+ +AQ+F S L+ G FG+
Sbjct: 107 VRMAQDF--SMRYLLVDGHGNFGSI 129
>sp|C0R046|GYRA_BRAHW DNA gyrase subunit A OS=Brachyspira hyodysenteriae (strain ATCC
49526 / WA1) GN=gyrA PE=3 SV=1
Length = 834
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSA-YH-HGEQSLMSTIIN 166
R++P + DGLKP R++L+ N + + A +V E A YH HG+ ++ T++
Sbjct: 51 RALPDVRDGLKPVHRRILYAMYDANLTHDKPYKKSAATVGEVLARYHPHGDAAVYGTMVR 110
Query: 167 LAQNFVGSNNINLLQPIGQFGTF 189
+AQ+F S L+ G FG+
Sbjct: 111 MAQDF--SMRYLLVDGQGNFGSI 131
>sp|P48371|GYRA_NEIGO DNA gyrase subunit A OS=Neisseria gonorrhoeae GN=gyrA PE=3 SV=1
Length = 916
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 109 RSIPSLCDGLKPGSRKVLFTC--LKRN-DRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DGLKP R+VL+ LK N + K A++ G V YH HG+ ++ TI
Sbjct: 40 RALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVI--GKYHPHGDSAVYDTI 97
Query: 165 INLAQNFVGSNNINLLQPIGQFGTF 189
+ +AQNF + L+ G FG+
Sbjct: 98 VRMAQNF--AMRYVLIDGQGNFGSV 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,728,109
Number of Sequences: 539616
Number of extensions: 5298484
Number of successful extensions: 13048
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 12881
Number of HSP's gapped (non-prelim): 196
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)