Query psy11240
Match_columns 363
No_of_seqs 204 out of 1250
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:44:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qx3_A DNA topoisomerase 2-bet 100.0 4E-116 1E-120 925.6 18.5 357 2-358 204-693 (803)
2 3l4j_A DNA topoisomerase 2; to 100.0 6E-109 2E-113 869.2 18.8 341 2-355 175-647 (757)
3 4gfh_A DNA topoisomerase 2; to 100.0 3E-102 1E-106 857.3 20.0 339 2-353 595-1065(1177)
4 2xkj_E Topoisomerase IV; type 100.0 7.4E-89 2.5E-93 720.9 19.8 330 2-339 187-674 (767)
5 2xcs_B DNA gyrase subunit B, D 100.0 3.7E-86 1.3E-90 693.8 17.9 315 7-343 136-615 (692)
6 2inr_A DNA topoisomerase 4 sub 100.0 6.3E-76 2.2E-80 600.7 9.6 258 85-351 27-439 (514)
7 2nov_A DNA topoisomerase 4 sub 100.0 4E-76 1.4E-80 600.5 5.5 258 85-351 3-415 (496)
8 3lpx_A GYRA, DNA gyrase, A sub 100.0 6.6E-69 2.3E-73 545.0 12.7 230 108-345 1-385 (500)
9 3ilw_A DNA gyrase subunit A; D 100.0 2.3E-68 8E-73 539.9 11.7 236 104-348 3-398 (470)
10 1zvu_A Topoisomerase IV subuni 100.0 3.3E-65 1.1E-69 537.0 14.0 222 108-337 2-378 (716)
11 3k9f_C DNA topoisomerase 4 sub 98.9 5.5E-10 1.9E-14 106.3 4.8 63 2-65 194-258 (268)
12 3m4i_A DNA gyrase subunit B; G 98.9 4.9E-10 1.7E-14 105.4 2.2 60 4-65 172-234 (242)
13 3ku8_A GYRA14, DNA gyrase subu 94.4 0.011 3.9E-07 52.3 1.4 57 286-343 14-72 (156)
14 3ush_A Uncharacterized protein 31.3 19 0.00064 30.9 1.7 36 93-128 41-80 (129)
15 2lq3_A Uncharacterized protein 26.7 28 0.00096 29.8 2.0 35 93-127 43-81 (130)
No 1
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=4.1e-116 Score=925.57 Aligned_cols=357 Identities=64% Similarity=1.003 Sum_probs=321.1
Q ss_pred CCcceeeccccccCCcHHHHHHhhhhhcceeeeEEcCCCchHHHHHhcCCcchhhHHHHHHHhHHHhhhhhccCCccccc
Q psy11240 2 NTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYL 81 (363)
Q Consensus 2 ~~w~iKYyKGLGTst~~eakeyF~~l~~h~~~f~~~~~~d~~~i~~aF~kk~~d~RK~Wl~~~~~~~~~~~~~~~~~~~l 81 (363)
++|+|+||||||+++++|++|||.|+++|++.|.|.+++|+++|||||+|+++++||+||.++.+++++++++|+||+||
T Consensus 204 ~~~~iqryKGLGem~~~el~ettmd~~~~r~~~~~~~~~d~~~~d~~F~k~~~~~RK~wi~~~~~~~~~~~~~~~p~~~l 283 (803)
T 3qx3_A 204 KAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQRRLHGLPEQFL 283 (803)
T ss_dssp ----------------CHHHHHHHTHHHHEEEEECCSHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred CCcccccccccCCCCHHHHHHHhcCcccceEEEEeCCcchHHHHHHHhcCCChHHHHHHHHHhhhhhccccccCCCcccc
Confidence 46999999999999999999999999999999999877889999999999999999999999999999999999999999
Q ss_pred ccCcceeecHHHHHHHHHHHHHHhhccCCCCccccCCCCcceeeEeecccCCCCCceeeeeehhhhhhhccCCCCcchHH
Q psy11240 82 YTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLM 161 (363)
Q Consensus 82 ~d~~~~~i~~~dfinkeli~yS~~~~~RsIPsv~DGLKP~QRKILy~~~k~~~k~~~KvAql~G~Vse~~~YHHGe~Sl~ 161 (363)
||++++.|+|+||||+|||+|||+||.||||||+||||||||||||+|+++++++++|||||||+|||||+|||||+|+|
T Consensus 284 ~d~~~~~i~y~dFInkELi~FS~adn~RaiP~v~DGLKPvqRriLy~m~~~~~~~~~K~A~~vG~vse~~~YHHGd~siy 363 (803)
T 3qx3_A 284 YGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAGSVAEMSAYHHGEQALM 363 (803)
T ss_dssp -----CEEEHHHHHHHTHHHHHHHHHHHHSCBTTTSCCHHHHHHHHHHHHHCCSSCEEHHHHHHHHHHHHTCCSCHHHHH
T ss_pred ccCccceeeHHHhhhHHHHHHHHHhhccCCCchhhCCCcccceeeHhhhccCCCCceeEEEEeeehhhhccCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccccccccCCCCCccc----------eeec--CC------------------------------C-C
Q psy11240 162 STIINLAQNFVGSNNINLLQPIGQFGTFL----------FIFE--ST------------------------------N-L 198 (363)
Q Consensus 162 ~tiV~MAQdfvGSnNi~Ll~p~G~FGsr~----------Yi~t--s~------------------------------P-i 198 (363)
+|||+|||+|+||||+|||+|+||||||+ |||| || | |
T Consensus 364 ~aiV~mAQ~f~GS~~~~Ll~~~GnFGsr~~~gd~aAA~RYte~rLs~~a~~l~~~~d~~~vd~~ydd~~~~EP~vlp~~i 443 (803)
T 3qx3_A 364 MTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYDDNQRVEPEWYIPII 443 (803)
T ss_dssp HHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTSCEECBCTTHHHHSCHHHHTTSCEEEETTEEEEESCCCCSS
T ss_pred HHHHHHhcchhhhccccccccCCCcCCCCCCCCcccchhhhheeccHHHHHHhhcccccccccccCCCcccccccccccC
Confidence 99999999999999999999999999984 9998 54 5 9
Q ss_pred ccccccCCCcccccc-----------------------------------------------------------------
Q psy11240 199 SGAVVNALDFGSGGW----------------------------------------------------------------- 213 (363)
Q Consensus 199 P~vLvNGa~GIgtG~----------------------------------------------------------------- 213 (363)
||||||||+||||||
T Consensus 444 P~lLvNGa~GIavGmaTnIPphNl~Evi~a~~~ll~~~~~~pd~P~~~gf~G~i~~tGrg~~~~rg~~~~~~~~~IvITE 523 (803)
T 3qx3_A 444 PMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKNFKGTIQELGQNQYAVSGEIFVVDRNTVEITE 523 (803)
T ss_dssp CHHHHTTCEEECSSCEEECCCCCHHHHHHHHHHHHTTCCCCCCCCCCTTCCSEEEEEETTEEEEECEEEEEETTEEEEEE
T ss_pred CeeeecCCcceEeeeecCCCCCCHHHHHHHHHHHhcCCCCCCCCCccCCCcceEEecCCcEEEEEEEEEEecCCEEEEEE
Confidence 999999999999999
Q ss_pred ------c-------------------cccccccccCCCceeEEEEEeCCCCChHHHHHhHhhhccceeeeccceEEEEec
Q psy11240 214 ------R-------------------FESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDR 268 (363)
Q Consensus 214 ------T-------------------~~I~d~~d~~~~~~v~f~I~l~~~~~~~~~~~~L~k~fkL~~s~~~~nm~lfd~ 268 (363)
| .+|+||+|+||+++|||+|+|+++.+++++.++|++.|+||++|++|||+|||.
T Consensus 524 LPy~~~t~~~k~~lle~i~~~~~K~~~~I~d~rDes~~~gvrivI~Lk~~~~~~~vl~~Lyk~t~Lq~sf~~n~~~l~d~ 603 (803)
T 3qx3_A 524 LPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDH 603 (803)
T ss_dssp CCTTCCHHHHHHHTHHHHHHCCSSSCCCCSEEEECCCSSCCCEEEECCHHHHHHHHHHCHHHHTTCEEEEECCCEEEECT
T ss_pred CCCccchhHHHHHHHHHHHhhcccCCcceeeccccCCCCceEEEEEEcCCchHHHHHHHHHHhcCCeEEeeceeEEEECC
Confidence 0 059999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhcceeEcccchHHHHHHHHHcCCCCC
Q psy11240 269 YGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRKYDSD 348 (363)
Q Consensus 269 ~g~i~ky~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~~~i~i~~k~k~~l~~~L~~~~f~~~ 348 (363)
+|++++|.|+.|||++|++||+++|+||++|+++++++++++|+||+|||++||+|+|+|.+++|++|+++|+++||+++
T Consensus 604 ~g~~pk~~~l~eiL~~F~~~R~ev~~rR~~~lL~kLq~el~kL~nk~rFI~~vi~g~l~i~nkkk~~li~eL~~~~f~~~ 683 (803)
T 3qx3_A 604 MGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESD 683 (803)
T ss_dssp TSCEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCCHHHHHHHHHHTTCCSC
T ss_pred CCCcceeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecCCcHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchhhhhhhh
Q psy11240 349 PVKSWKMKQN 358 (363)
Q Consensus 349 ~~~~~k~~~~ 358 (363)
|+++|++.++
T Consensus 684 p~~~~~~~~~ 693 (803)
T 3qx3_A 684 PVKAWKEAQE 693 (803)
T ss_dssp HHHHHHHHCC
T ss_pred Cchhhhhhhc
Confidence 9999987664
No 2
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=5.8e-109 Score=869.24 Aligned_cols=341 Identities=44% Similarity=0.671 Sum_probs=329.0
Q ss_pred CCcceeeccccccCCcHHHHHHhhhhhcceeeeEEcCCCchHHHHHhcCCcchhhHHHHHHHhHHHhhhhhccCCccccc
Q psy11240 2 NTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYL 81 (363)
Q Consensus 2 ~~w~iKYyKGLGTst~~eakeyF~~l~~h~~~f~~~~~~d~~~i~~aF~kk~~d~RK~Wl~~~~~~~~~~~~~~~~~~~l 81 (363)
++|+|+||||||+++++|++|||.+|+.|++.|.+.+.+|.+++||||+|+++++||+||.++. ||+||
T Consensus 175 ~~~~iqryKGLGem~~~ql~e~f~~m~~~~r~l~~~~~~d~~~~d~~f~~~~~~~Rk~wi~~~~-----------~~~~l 243 (757)
T 3l4j_A 175 FTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYE-----------PGTVL 243 (757)
T ss_dssp SCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTTHHHHHHHHHCTTCHHHHHHHHHHCC-----------TTCCC
T ss_pred CCCccceecCcCcCCHHHHHHHhcCcCceeEEEEecCccHHHHHHHHhCcCcchHHHHHHHhcC-----------Ccccc
Confidence 4699999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred ccCcceeecHHHHHHHHHHHHHHhhccCCCCccccCCCCcceeeEeecccCCCCCceeeeeehhhhhhhccCCCCcchHH
Q psy11240 82 YTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLM 161 (363)
Q Consensus 82 ~d~~~~~i~~~dfinkeli~yS~~~~~RsIPsv~DGLKP~QRKILy~~~k~~~k~~~KvAql~G~Vse~~~YHHGe~Sl~ 161 (363)
|+++..++|+|||++||+.|||+++.||||||+||||||||||||+|+++++++++||||+||+|+++|+|||||+|+|
T Consensus 244 -d~~~~~~~~~~~~~~~~i~ysm~~~~RAlPdv~DGLKPvqRrILyam~~~~~~~~~K~A~ivG~V~~~~~YHHGD~siy 322 (757)
T 3l4j_A 244 -DPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLA 322 (757)
T ss_dssp -CSSCSEECHHHHHHHTHHHHHHHHHHHHSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTTCCSCHHHHH
T ss_pred -ccceeeecHHHHHHHHHHHHhhhhhhccCchhhccCCchheeeehhhhhhCCCcCcceeeeehhhhhhcccCCCchHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccccccccCCCCCccc----------eeec--CC------------------------------C-C
Q psy11240 162 STIINLAQNFVGSNNINLLQPIGQFGTFL----------FIFE--ST------------------------------N-L 198 (363)
Q Consensus 162 ~tiV~MAQdfvGSnNi~Ll~p~G~FGsr~----------Yi~t--s~------------------------------P-i 198 (363)
+|||+|||||+||||+|||+|+||||||+ |||| || | |
T Consensus 323 daiVrmAQ~f~gS~~~pLldgqGNFGS~~~~gd~aAA~RYte~rLs~~a~~l~~d~d~~~vdf~~~Dg~~~EP~vlp~~i 402 (757)
T 3l4j_A 323 QTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWYLPIL 402 (757)
T ss_dssp HHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHHSCGGGGGGSCEEECSSSEEEESCCCCSS
T ss_pred HHHHHHhccchhhcccceeccCCCCCCcCCCCCcccccchhhhchhHHHHHHhcccccCcccCcCCCCCccCCccccccc
Confidence 99999999999999999999999999994 9998 54 5 9
Q ss_pred ccccccCCCcccccc---------------------------------------------------------------c-
Q psy11240 199 SGAVVNALDFGSGGW---------------------------------------------------------------R- 214 (363)
Q Consensus 199 P~vLvNGa~GIgtG~---------------------------------------------------------------T- 214 (363)
||||||||+|||||| |
T Consensus 403 P~lLvNGs~GIavGmATnIPphNl~Evi~a~~~~i~~~~~~~l~p~~~G~~G~i~~~g~G~~~~rg~~e~~~~~~IvITE 482 (757)
T 3l4j_A 403 PMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVLEITE 482 (757)
T ss_dssp CHHHHHCEEEECSSCEEEECCCCHHHHHHHHHHHHTTCCCCCCCCCCTTCCSEEEEEETTEEEEECEEEEEETTEEEEEE
T ss_pred chhhhcCCcceEeeeccCCCCCCHHHHHHHHHHHhcCCChhhhcccccCCCceEEecCCcEEEEEEEEEEcCCCeEEEEe
Confidence 999999999999999 0
Q ss_pred -------------------------cccccccccCCCceeEEEEEeCCCCChHHHHHhHhhhccceeeeccceEEEEecC
Q psy11240 215 -------------------------FESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRY 269 (363)
Q Consensus 215 -------------------------~~I~d~~d~~~~~~v~f~I~l~~~~~~~~~~~~L~k~fkL~~s~~~~nm~lfd~~ 269 (363)
.+|+||+|+|++ +|||+|+|+++.+++++.++|++.|+|+++|++|||++||.+
T Consensus 483 lPy~v~~~~lie~I~~lv~~~~K~~~~I~dirDesd~-gvrivI~lk~~~~~~~~l~~L~k~t~Lq~sf~~~nm~l~d~~ 561 (757)
T 3l4j_A 483 LPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDD-NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPH 561 (757)
T ss_dssp CCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCSS-SCCEEEECCHHHHHHHHHHCHHHHTTCEEEEECSCCEEECTT
T ss_pred CCCccCHHHHHHHHHHHHhhccCCCccceehhhcCCC-cEEEEEEecCCcchHHHHHHHHHhcCCeEEeccceEEEEcCC
Confidence 058999999999 999999999999999999999999999999999999999999
Q ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhcceeEcccchHHHHHHHHHcCCCCCC
Q psy11240 270 GVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRKYDSDP 349 (363)
Q Consensus 270 g~i~ky~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~~~i~i~~k~k~~l~~~L~~~~f~~~~ 349 (363)
|+|++|.|+.|||++|++||+++|+||++|++++++.++++|+||+|||++||+|+|+|.+++|++|+++|+++||+++|
T Consensus 562 g~~~~~~~l~eiL~~f~~~R~ev~~rR~~~~l~k~~~~l~~l~nk~rFI~~vi~g~l~i~nkkk~~li~eL~~~~f~~~~ 641 (757)
T 3l4j_A 562 GKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFN 641 (757)
T ss_dssp SCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSSCHHHHHHHHHHTTCCEEC
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCeeEEcCCcHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhh
Q psy11240 350 VKSWKM 355 (363)
Q Consensus 350 ~~~~k~ 355 (363)
+++|..
T Consensus 642 ~~~~~~ 647 (757)
T 3l4j_A 642 KEGKPY 647 (757)
T ss_dssp SSCCEE
T ss_pred cccccc
Confidence 665543
No 3
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-102 Score=857.26 Aligned_cols=339 Identities=44% Similarity=0.671 Sum_probs=322.4
Q ss_pred CCcceeeccccccCCcHHHHHHhhhhhcceeeeEEcCCCchHHHHHhcCCcchhhHHHHHHHhHHHhhhhhccCCccccc
Q psy11240 2 NTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYL 81 (363)
Q Consensus 2 ~~w~iKYyKGLGTst~~eakeyF~~l~~h~~~f~~~~~~d~~~i~~aF~kk~~d~RK~Wl~~~~~~~~~~~~~~~~~~~l 81 (363)
.+|+|+||||||+++++|++|||.+|++|++.|.+.+++|.+.+||+|+++++|+||+||.+|. |++++
T Consensus 595 ~~~~iqryKGLGEm~~~ql~Ett~~~d~~~~~~~~v~~~d~~~~d~~f~~~~~~~RkewI~~~~-----------~~~~~ 663 (1177)
T 4gfh_A 595 FTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYE-----------PGTVL 663 (1177)
T ss_dssp SCEEEEEC----CCCHHHHHHHHHTCTTTEEEEECCCTTTHHHHHHHHCGGGHHHHHHHHHHCC-----------TTCCC
T ss_pred CCcceeecccCCcccHHHHHHHHhCcccceEEEEEcccccHHHHHHHHhccchhhHHHHHHhcC-----------ccccc
Confidence 3699999999999999999999999999999999999999999999999999999999999998 88888
Q ss_pred ccCcceeecHHHHHHHHHHHHHHhhccCCCCccccCCCCcceeeEeecccCCCCCceeeeeehhhhhhhccCCCCcchHH
Q psy11240 82 YTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCLKRNDRREVKVAQLAGSVAEHSAYHHGEQSLM 161 (363)
Q Consensus 82 ~d~~~~~i~~~dfinkeli~yS~~~~~RsIPsv~DGLKP~QRKILy~~~k~~~k~~~KvAql~G~Vse~~~YHHGe~Sl~ 161 (363)
|++++.|+|+||||+|||+|||+|+.||||||+||||||||||||+||+++++.++||+|+||+|+|+++|||||+|||
T Consensus 664 -d~~~~~~~~~d~~~~~~~~ys~~~~~RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~k~a~~V~~~~~yhHGd~s~~ 742 (1177)
T 4gfh_A 664 -DPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLA 742 (1177)
T ss_dssp -CSSCSEEEHHHHHHHTHHHHHHHHHHHHSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTTCCSCHHHHH
T ss_pred -ccccccccHHHHHHhhhhhhhhhhhhhcCchhhhhcCcccceEehhhhhhccCCCccHHHHHHHHHhhhccCCCcchHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccccccccCCCCCccc----------eeec--CC------------------------------C-C
Q psy11240 162 STIINLAQNFVGSNNINLLQPIGQFGTFL----------FIFE--ST------------------------------N-L 198 (363)
Q Consensus 162 ~tiV~MAQdfvGSnNi~Ll~p~G~FGsr~----------Yi~t--s~------------------------------P-i 198 (363)
+|||+||||||||||+|||+|+||||||+ |||| +| | |
T Consensus 743 ~tiv~mAQ~f~gs~~~~Ll~~~GnFGsr~~~g~~~Aa~RYte~rl~~~a~~l~~~~d~~~v~~~~~d~~~~EP~~~~p~i 822 (1177)
T 4gfh_A 743 QTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWYLPIL 822 (1177)
T ss_dssp HHHHHHHCCSTTSCTTCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHHSCGGGTTTSCEEEETTEEEEESCCCCSS
T ss_pred HHHHHHHHHHHhhCceeeEEccCCCCccCCCCCcccccchhhhhHHHHHHHhcchhccccccCcCCCCCccCcccccccc
Confidence 99999999999999999999999999985 9999 54 6 9
Q ss_pred ccccccCCCcccccc---------------------------------------------------------------c-
Q psy11240 199 SGAVVNALDFGSGGW---------------------------------------------------------------R- 214 (363)
Q Consensus 199 P~vLvNGa~GIgtG~---------------------------------------------------------------T- 214 (363)
||||||||+|||||| |
T Consensus 823 P~lLvNGs~GIavGmaT~IPphN~~Evi~~~~~li~~~~~~~l~P~~~g~~G~i~~~~~gr~~~~g~~e~~~~~~i~ITE 902 (1177)
T 4gfh_A 823 PMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEPLRYRMYGRIEQIGDNVLEITE 902 (1177)
T ss_dssp CSTTTTCEEEECSSCEEEECCBCHHHHHHHHHHHHTTCCCCCCCBCCTTCCCEEEECSTTCEEEECEEEEEETTEEEEEE
T ss_pred chhhccCCCcccccccccCCCCCHHHHHHHHHHHhcCCCHHHcCCCCCCCCCceEeecCcEEEEEEEEEEcCCCEEEEEe
Confidence 999999999999999 0
Q ss_pred -------------------------cccccccccCCCceeEEEEEeCCCCChHHHHHhHhhhccceeeeccceEEEEecC
Q psy11240 215 -------------------------FESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRY 269 (363)
Q Consensus 215 -------------------------~~I~d~~d~~~~~~v~f~I~l~~~~~~~~~~~~L~k~fkL~~s~~~~nm~lfd~~ 269 (363)
.+|+||+|+|+ ++|||+|+++++.+++++.++|+|.|+|+++|+++||++||.+
T Consensus 903 LP~~v~~~~~~e~i~~~~~~~~K~~~~I~d~~d~sd-~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~~Nm~~~d~~ 981 (1177)
T 4gfh_A 903 LPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-DNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPH 981 (1177)
T ss_dssp CCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCS-SSCCEEEECCHHHHHHHHHHCHHHHTTCEEEECCSCCEEECTT
T ss_pred CCccccHHHHHHHHHHHhhhccCcccceeechhcCC-CccEEEEEECCCccHHHHHHhHHHhccCcceecceEEEEEcCC
Confidence 06999999986 6899999999999999999999999999999999999999999
Q ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhcceeEcccchHHHHHHHHHcCCCCCC
Q psy11240 270 GVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIAELIKRKYDSDP 349 (363)
Q Consensus 270 g~i~ky~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~~~i~i~~k~k~~l~~~L~~~~f~~~~ 349 (363)
|++++|.|++|||++|++||+++|+||++|+|++++.++++++++++||+++|+++|.|.++++++|+++|++.||++++
T Consensus 982 g~i~k~~~l~eiL~~f~~~R~e~~~rRk~~~l~~l~~~l~k~~~r~~fi~~vi~~~L~i~~~~~devI~~Lr~~~~~~~a 1061 (1177)
T 4gfh_A 982 GKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFN 1061 (1177)
T ss_dssp SCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSSCHHHHHHHHHHTTCCEEC
T ss_pred CCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCeEEEecCCHHHHHHHHHHCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred chhh
Q psy11240 350 VKSW 353 (363)
Q Consensus 350 ~~~~ 353 (363)
+.+.
T Consensus 1062 k~~~ 1065 (1177)
T 4gfh_A 1062 KEGK 1065 (1177)
T ss_dssp SSSC
T ss_pred hhhh
Confidence 6543
No 4
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=7.4e-89 Score=720.92 Aligned_cols=330 Identities=18% Similarity=0.274 Sum_probs=275.9
Q ss_pred CCcceeeccccccCCcHHHHHHhhhhhccee-eeEEcCC-CchHHHHHhcCCcchhhHHHHHHHhHHHhhhhhccCCccc
Q psy11240 2 NTIHDVMIAGLGTSTSKEAKEYFSNMERHRI-LFKYSGD-NDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGED 79 (363)
Q Consensus 2 ~~w~iKYyKGLGTst~~eakeyF~~l~~h~~-~f~~~~~-~d~~~i~~aF~kk~~d~RK~Wl~~~~~~~~~~~~~~~~~~ 79 (363)
++|+|+||||||||+++|++|||.|.+.|++ .+..++. .++++++|+|+++++++||+||.++.....-..+.+++.+
T Consensus 187 ~~~~IqRYKGLGEmnp~ql~ETtmdp~~R~L~~v~i~da~~ad~~f~~lmgkk~ve~RKewI~~~~~~~~~d~~~~~~~~ 266 (767)
T 2xkj_E 187 KNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKLLAKKRAADRKQWLEQKGNLADITVEDKLTMT 266 (767)
T ss_dssp CCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSHHHHHHHHHHHHCGGGHHHHHHHHHHHGGGCC----------
T ss_pred CCCceecccCCCCCCHHHHhHhhcCccceEEEEEEcccHHHHHHHHHHHhCCCCchHHHHHHHhcCccccchhhhccccc
Confidence 3699999999999999999999999987764 4444321 4678999999999999999999998642222223455668
Q ss_pred ccccCcceeecHHHHHHHHHHHHHHhh-ccCCCCccccCCCCcceeeEeecccCC---CCCceeeeeehhhhhhhccCC-
Q psy11240 80 YLYTKTTKAITYTEFVNKELILFSNMD-NERSIPSLCDGLKPGSRKVLFTCLKRN---DRREVKVAQLAGSVAEHSAYH- 154 (363)
Q Consensus 80 ~l~d~~~~~i~~~dfinkeli~yS~~~-~~RsIPsv~DGLKP~QRKILy~~~k~~---~k~~~KvAql~G~Vse~~~YH- 154 (363)
|++|+++..++|+|||+++|+.||||+ +.||||||+||||||||||||+|++++ +++++|||++||+| +|+||
T Consensus 267 ~~~~~~~~~i~i~d~~~~~~l~YamsvI~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V--~gkYHP 344 (767)
T 2xkj_E 267 SLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDV--LGKYHP 344 (767)
T ss_dssp -------CEEEHHHHHHHHHHHHHHHHHHHHTCCBTTTSCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHH--HHHTCC
T ss_pred ccccCCceeeeHHHHHHHHHHHHHHHHhhccCCCchhhcCCccchhhhHHHHHhCCCCCCCeeeeeehHHHH--hhccCC
Confidence 888889999999999999999999997 799999999999999999999999986 56789999999999 68999
Q ss_pred CCcchHHHHHHHhhccccccccccccccCCCCCccc---------eeec--CC---------------------------
Q psy11240 155 HGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL---------FIFE--ST--------------------------- 196 (363)
Q Consensus 155 HGe~Sl~~tiV~MAQdfvGSnNi~Ll~p~G~FGsr~---------Yi~t--s~--------------------------- 196 (363)
|||+|+|+|||+||||| |||+|||+|+||||||+ |||| ||
T Consensus 345 HGD~SiydaiVrmAQ~f--s~r~pLldg~GNFGS~dgd~a~AA~RYte~rLs~ia~~ll~~~d~~tvdf~~n~Dg~~~EP 422 (767)
T 2xkj_E 345 HGDSACYEAMVLMAQPF--SYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEP 422 (767)
T ss_dssp SCHHHHHHHHHHHHCTT--TCSSCSEECSSCCCBTTBTTCCCCTTTCEEEECGGGHHHHTTTTTTCSCEEECTTSSSEEE
T ss_pred CchhHHHHHHHHHhhhh--hcccceeecCCCCCCCCCCcccccccceeeeHhHHHHHHHhhcCccccccCcCCCCcccCc
Confidence 99999999999999999 99999999999999999 9998 54
Q ss_pred ----C-CccccccCCCcccccc----------------------------------------------------------
Q psy11240 197 ----N-LSGAVVNALDFGSGGW---------------------------------------------------------- 213 (363)
Q Consensus 197 ----P-iP~vLvNGa~GIgtG~---------------------------------------------------------- 213 (363)
| |||||||||+||||||
T Consensus 423 ~vlp~~iP~lLvNGa~GIavGmaT~IPphNl~Evi~a~~~li~~~~~~~~~l~~~i~gPdFptgG~I~~~~~~i~~~Y~t 502 (767)
T 2xkj_E 423 ITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTT 502 (767)
T ss_dssp SSCCCSSCHHHHHCEEEEETTEEEEECCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCSSSCEECCCHHHHHHHHHH
T ss_pred hhccccccHHHhcCCCccccccccCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCCceEecCchhhHHHhcc
Confidence 4 9999999999999999
Q ss_pred --------------------c------------------------cccccccccCCC-ceeEEEEEeCC-CCChHHHHHh
Q psy11240 214 --------------------R------------------------FESNDYKEYHTD-TTVKFVVTMSP-DKLHKAEMDG 247 (363)
Q Consensus 214 --------------------T------------------------~~I~d~~d~~~~-~~v~f~I~l~~-~~~~~~~~~~ 247 (363)
| .+|+||+|+|++ ++|||+|++++ +..++.+++.
T Consensus 503 GrG~i~~rg~~~ie~~~ivITElPy~v~~~~~ie~I~~l~~~kki~~I~d~rDesd~~~gvrivI~lk~~~~~~~~vl~~ 582 (767)
T 2xkj_E 503 GRGSYRMRAVYTIEKNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAEAVMSH 582 (767)
T ss_dssp SEEEEEEECEEEEETTEEEEEECCTTCCHHHHHHHHHHHHHTTCCTTEEEEEECCCSSCSSCEEEEESCTTSCHHHHHHH
T ss_pred CCeeEEEEEEEEEECCEEEEEeCCCcCcHHHHHHHHHHHHhcCCCCceeehhhccCCCCcEEEEEEECcCCCCHHHHHHH
Confidence 0 068999999987 58999999998 4778889999
Q ss_pred HhhhccceeeeccceEEEEecCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHhhhcce
Q psy11240 248 LHKVFKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQA-RFIVEKCDGDL 326 (363)
Q Consensus 248 L~k~fkL~~s~~~~nm~lfd~~g~i~ky~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~-rFI~~vi~~~i 326 (363)
|++.|+||++|++ ||+++|.+|+|+ +.|+.+||++|++||+++|+||++|+|+++++++|+|++.. .| ..|+..|
T Consensus 583 L~k~T~Lq~sf~~-Nm~~l~~~g~p~-~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~--~~iD~vI 658 (767)
T 2xkj_E 583 LFATTDLESSYRV-NLNMIGEDGRPQ-VKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAY--LDIDTVI 658 (767)
T ss_dssp HHHHSTTEEEEEE-ECEEECTTSCEE-ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTHHHHH
T ss_pred HHHhcchhhhccc-ceEEEccCCeeE-EcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH--HHHHHHH
Confidence 9999999999998 799999999996 78999999999999999999999999999999999999964 44 2244444
Q ss_pred eE---cccchHHHHHH
Q psy11240 327 RI---ENRKKKEMIAE 339 (363)
Q Consensus 327 ~i---~~k~k~~l~~~ 339 (363)
.+ +..+|..|++.
T Consensus 659 ~iIr~s~~~k~~L~~~ 674 (767)
T 2xkj_E 659 RIIREEDQPKPVLMEH 674 (767)
T ss_dssp HHHHHCSSHHHHHHHH
T ss_pred HHHHhccchHHHHHHh
Confidence 44 33456666544
No 5
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=3.7e-86 Score=693.80 Aligned_cols=315 Identities=22% Similarity=0.284 Sum_probs=270.6
Q ss_pred eeccccccCCcHHHHHHhhhhhcceeeeEE--cC-CCchHHHHHhcCCcchhhHHHHHHHhHHHhhhhhccCCccccccc
Q psy11240 7 VMIAGLGTSTSKEAKEYFSNMERHRILFKY--SG-DNDDAHIRMAFSKKLVDERKTWLTTWMEECRRRKEMGIGEDYLYT 83 (363)
Q Consensus 7 KYyKGLGTst~~eakeyF~~l~~h~~~f~~--~~-~~d~~~i~~aF~kk~~d~RK~Wl~~~~~~~~~~~~~~~~~~~l~d 83 (363)
+|||||||++++|++|||.|.+ |+.-+.+ .+ ++++++++|+|. +++++||+||.++. ++++| |
T Consensus 136 ~~yKGLGem~~~ql~et~m~p~-~r~l~~v~~~d~~~~~~~~~~lmg-~~~~~Rk~~i~~~~-----------~~~~l-d 201 (692)
T 2xcs_B 136 TGYKGLGEMNADQLWETTMNPE-HRALLQVKLEDAIEADQTFEMLMG-DVVENRRQFIEDNA-----------VYANL-D 201 (692)
T ss_dssp SSCSSGGGSCHHHHHHHHTCTT-TCCCEEEECCCHHHHHHHHHHHHS-SCHHHHHHHHHHHC-----------CCCC---
T ss_pred hhhcccccCCHHHHHHHhcCcc-ceeEEEEecCchhhHHHHHHHHcC-CCchHHHHHHHhcC-----------Ccccc-c
Confidence 5999999999999999999974 5544444 33 245789999996 56999999999875 44555 4
Q ss_pred C------cceeecHHHHHHHHHHHHHHhh-ccCCCCccccCCCCcceeeEeecccCC---CCCceeeeeehhhhhhhccC
Q psy11240 84 K------TTKAITYTEFVNKELILFSNMD-NERSIPSLCDGLKPGSRKVLFTCLKRN---DRREVKVAQLAGSVAEHSAY 153 (363)
Q Consensus 84 ~------~~~~i~~~dfinkeli~yS~~~-~~RsIPsv~DGLKP~QRKILy~~~k~~---~k~~~KvAql~G~Vse~~~Y 153 (363)
. .+..++|+|||+++|+.||||+ +.||||||+||||||||||||+|++++ +++++||||+||+| +++|
T Consensus 202 ~~eL~~~~i~~~~i~~~~~~~~l~Yamsvi~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~Ar~vG~V--~gkY 279 (692)
T 2xcs_B 202 FAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDV--MGKY 279 (692)
T ss_dssp ----------EEEHHHHHHHHHHHHHHHHHHHTSSCBTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHH--HHHT
T ss_pred cccccccceeeeeHHHHHHHHHHHHHHHhhhcccCCchhhcCCchhHHHHHHHHHhCCCCCCCceeehhhhHHH--Hhcc
Confidence 3 5789999999999999999997 689999999999999999999999986 46789999999999 6799
Q ss_pred C-CCcchHHHHHHHhhccccccccccccccCCCCCccc--------eeec--CC--------------------------
Q psy11240 154 H-HGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL--------FIFE--ST-------------------------- 196 (363)
Q Consensus 154 H-HGe~Sl~~tiV~MAQdfvGSnNi~Ll~p~G~FGsr~--------Yi~t--s~-------------------------- 196 (363)
| |||+|+|+|||+||||| |||+|||+|+|||||++ |||| ||
T Consensus 280 HPHGD~SiydaiVrmAQ~f--s~r~pLldg~GNFGS~~Gd~aAA~RYte~rLs~ia~~ll~d~d~~tvdf~~nyDg~~~E 357 (692)
T 2xcs_B 280 HPHGDSSIYEAMVRMAQDF--SYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNERE 357 (692)
T ss_dssp CCSCHHHHHHHHHHHHCTT--TCSSCSEEEESCCCCTTCCCCCCTTTCEEEECHHHHHHHTTTTTTCSCEEECTTSSCEE
T ss_pred CCccHHHHHHHHHHHhhcc--ccccccccCCCCCCCCCCCccccccceeecHHHHHHHHhhhcccccccCCcCCCCCccC
Confidence 9 99999999999999999 99999999999999998 9998 43
Q ss_pred -----C-CccccccCCCcccccc---------------------------------------------------------
Q psy11240 197 -----N-LSGAVVNALDFGSGGW--------------------------------------------------------- 213 (363)
Q Consensus 197 -----P-iP~vLvNGa~GIgtG~--------------------------------------------------------- 213 (363)
| +||||||||+||||||
T Consensus 358 P~vlp~~iP~lLvNGa~GIavGmaT~IPphNl~Evi~a~~~~i~~~~~~~~~l~~~i~gPDFPTGg~I~g~~gi~~~y~t 437 (692)
T 2xcs_B 358 PSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYET 437 (692)
T ss_dssp ESSCCCSSCHHHHHCEEEECSSCEEEECCBCHHHHHHHHHHHHTCTTCCHHHHTTTCCSBCCTTCCEEECSHHHHHHHHH
T ss_pred hhhccccccHHHHcCCCccccceecCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCCceEeCCcceeeeeec
Confidence 4 9999999999999999
Q ss_pred -------------------------c------------------------ccccccccc-CCCceeEEEEEeCCCCChHH
Q psy11240 214 -------------------------R------------------------FESNDYKEY-HTDTTVKFVVTMSPDKLHKA 243 (363)
Q Consensus 214 -------------------------T------------------------~~I~d~~d~-~~~~~v~f~I~l~~~~~~~~ 243 (363)
| .+|+||+|+ |++++|||+|+|+++.++++
T Consensus 438 GrG~~~~rg~~~ie~~~~~~~~ivITElPy~v~k~~lie~I~~lv~~kki~~I~d~rDetsd~~gvrivI~lk~~~~~~~ 517 (692)
T 2xcs_B 438 GRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASV 517 (692)
T ss_dssp SEEEEEEECEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHH
T ss_pred CCceEEEEEEEEEEecCCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCCCeeeccccCCCCCceEEEEEECCCCCHHH
Confidence 0 069999999 88899999999999999999
Q ss_pred HHHhHhhhccceeeeccceEEEEecCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhh
Q psy11240 244 EMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCD 323 (363)
Q Consensus 244 ~~~~L~k~fkL~~s~~~~nm~lfd~~g~i~ky~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~ 323 (363)
++++|+|.|+||++|++| |++++ +|+| +|.|+.+||++|++||+++|+||++|+|+++++++|+|++...++. .|+
T Consensus 518 ~l~~L~k~t~Lq~s~~~N-m~~l~-dg~p-~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~-~iD 593 (692)
T 2xcs_B 518 ILNNLYKQTPLQTSFGVN-MIALV-NGRP-KLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALD-HID 593 (692)
T ss_dssp HHHHHHHHSTTEEEEEEE-CEEEE-TTEE-EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-THH
T ss_pred HHHHHHHhccceeeeeee-EEEEE-CCEE-EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hHH
Confidence 999999999999999995 55555 4886 5779999999999999999999999999999999999999877664 455
Q ss_pred cceeEc--ccchHHHHHHHHHc
Q psy11240 324 GDLRIE--NRKKKEMIAELIKR 343 (363)
Q Consensus 324 ~~i~i~--~k~k~~l~~~L~~~ 343 (363)
..|.+. .+..+++.+.|.+.
T Consensus 594 ~vI~iIr~s~~~~~a~~~L~~~ 615 (692)
T 2xcs_B 594 EIISTIRESDTDKVAMESLQQR 615 (692)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHhhc
Confidence 555543 34566777777654
No 6
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=100.00 E-value=6.3e-76 Score=600.70 Aligned_cols=258 Identities=19% Similarity=0.293 Sum_probs=197.2
Q ss_pred cceeecHHHHHHHHHHHHHHhh-ccCCCCccccCCCCcceeeEeecccCCC---CCceeeeeehhhhhhhccCC-CCcch
Q psy11240 85 TTKAITYTEFVNKELILFSNMD-NERSIPSLCDGLKPGSRKVLFTCLKRND---RREVKVAQLAGSVAEHSAYH-HGEQS 159 (363)
Q Consensus 85 ~~~~i~~~dfinkeli~yS~~~-~~RsIPsv~DGLKP~QRKILy~~~k~~~---k~~~KvAql~G~Vse~~~YH-HGe~S 159 (363)
.+..++|+|||+++|+.||||+ +.||||||+||||||||||||+|+++++ ++++||||+||+| +|+|| |||+|
T Consensus 27 ~i~~~~i~~~~~~~yl~YamsvI~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V--~gkYHPHGD~S 104 (514)
T 2inr_A 27 IIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDV--IGQYHPHGDSS 104 (514)
T ss_dssp --------------------------CCCBTTTCCCHHHHHHHHHHHHHTCCSSSCCEEHHHHHHHH--HHHTCC---CH
T ss_pred cceeccHHHHHHHHHHHHHHHHhhcccCCchhhCCCcchhhHHHHHHHhCCCCCCCceeeeeeHhhH--HhcCCCccHHH
Confidence 4778999999999999999997 8999999999999999999999999854 6779999999999 68999 99999
Q ss_pred HHHHHHHhhccccccccccccccCCCCCccc--------eeec--CC-------------------------------C-
Q psy11240 160 LMSTIINLAQNFVGSNNINLLQPIGQFGTFL--------FIFE--ST-------------------------------N- 197 (363)
Q Consensus 160 l~~tiV~MAQdfvGSnNi~Ll~p~G~FGsr~--------Yi~t--s~-------------------------------P- 197 (363)
+|+|||+||||| |||+|||+|+|||||++ |||| || |
T Consensus 105 iydaiVrMAQdf--s~r~pLldgqGNFGS~dGd~aAA~RYte~rLs~ia~~ll~did~~tvdf~~nyDg~~~EP~vlp~~ 182 (514)
T 2inr_A 105 VYEAMVRLSQDW--KLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSR 182 (514)
T ss_dssp HHHHHHHTTCTT--TCSSCSEEEESCCCCTTCCCCCCTTTCEEEECTTHHHHSTTTTSSCSCEEECTTSSSEEESSCCCS
T ss_pred HHHHHHHHhhhh--hhCceeEecCCCCCCCCCCCCCCcCCeEEechHHHHHHHhhcCcccccCCcCCCCCcCCCcccCcc
Confidence 999999999999 99999999999999998 9999 54 4
Q ss_pred CccccccCCCcccccc----------------------------------------------------------------
Q psy11240 198 LSGAVVNALDFGSGGW---------------------------------------------------------------- 213 (363)
Q Consensus 198 iP~vLvNGa~GIgtG~---------------------------------------------------------------- 213 (363)
|||||||||+||||||
T Consensus 183 iP~lLvNGs~GIavGmATnIPphNl~Evi~a~~~li~~~~~~~~~l~~~i~GPDFPtGgii~~~~gi~~~y~tGrG~i~~ 262 (514)
T 2inr_A 183 FPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIV 262 (514)
T ss_dssp SCHHHHHCEECC--CCCCEECCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCTTCCEEECHHHHHHHHHHSEEEEEE
T ss_pred ccHHHhcCCCceecceecCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCcCCCCCCCcEEECchhhHHHhhcCCceEEE
Confidence 9999999999999999
Q ss_pred ------------------c------------------------cccccccccCCCceeEEEEEeCCCCChHHHHHhHhhh
Q psy11240 214 ------------------R------------------------FESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKV 251 (363)
Q Consensus 214 ------------------T------------------------~~I~d~~d~~~~~~v~f~I~l~~~~~~~~~~~~L~k~ 251 (363)
| .+|+||+|+|++++|||+|+|+++.+++.++++|+|.
T Consensus 263 rg~~~ie~~~~~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~e~vl~~L~k~ 342 (514)
T 2inr_A 263 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKN 342 (514)
T ss_dssp ECEEEECC----CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHHTTS
T ss_pred EEEEEEEecCCCccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCcCHHHHHHHHHHh
Confidence 0 0599999999999999999999999999999999999
Q ss_pred ccceeeeccceEEEEecCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhcceeEc-c
Q psy11240 252 FKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIE-N 330 (363)
Q Consensus 252 fkL~~s~~~~nm~lfd~~g~i~ky~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~~~i~i~-~ 330 (363)
|+||++|++ ||+++ .+|+| +|.|+.+||++|++||+++|+||++|+|+++++++|+|++..+++. .|++.|.+. +
T Consensus 343 t~Lq~s~~~-Nm~al-~~g~p-~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~-~id~vI~iIr~ 418 (514)
T 2inr_A 343 SDLQISYNF-NMVAI-SDGRP-KLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALS-ILDKVIELIRS 418 (514)
T ss_dssp STTEEEEEE-ECEEE-ETTEE-EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHH
T ss_pred cCceeeeee-eEEEe-eCCEE-EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence 999999999 68888 68997 5789999999999999999999999999999999999999988763 678887653 2
Q ss_pred -cchHHHHHHHHHcCCCCCCch
Q psy11240 331 -RKKKEMIAELIKRKYDSDPVK 351 (363)
Q Consensus 331 -k~k~~l~~~L~~~~f~~~~~~ 351 (363)
+.++++.+.|.+ +|.....+
T Consensus 419 s~~~~~a~~~L~~-~f~lse~q 439 (514)
T 2inr_A 419 SKNKRDAKENLIE-VYEFTEEQ 439 (514)
T ss_dssp CCSHHHHHHHHHT-TSSCCHHH
T ss_pred CCCHHHHHHHHHH-hcCCCHHH
Confidence 347888888865 57655443
No 7
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=100.00 E-value=4e-76 Score=600.48 Aligned_cols=258 Identities=19% Similarity=0.284 Sum_probs=196.1
Q ss_pred cceeecHHHHHHHHHHHHHHhh-ccCCCCccccCCCCcceeeEeecccCCC---CCceeeeeehhhhhhhccCC-CCcch
Q psy11240 85 TTKAITYTEFVNKELILFSNMD-NERSIPSLCDGLKPGSRKVLFTCLKRND---RREVKVAQLAGSVAEHSAYH-HGEQS 159 (363)
Q Consensus 85 ~~~~i~~~dfinkeli~yS~~~-~~RsIPsv~DGLKP~QRKILy~~~k~~~---k~~~KvAql~G~Vse~~~YH-HGe~S 159 (363)
.+..++|+|||+++|+.||||+ +.||||||+||||||||||||+|+++++ ++++||||+||+| +|+|| |||+|
T Consensus 3 ~i~~~~i~~~~~~~yl~YamsvI~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V--~gkYHPHGD~S 80 (496)
T 2nov_A 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNI--MGNFHPHGDSS 80 (496)
T ss_dssp --------------------------CCCCTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHH--HHHTCCSCSTT
T ss_pred CceeccHHHHHHHHHHHHHHHHHhcccCCchhcCCCcchhHHHHHHHHhCCCCCCCceeeeeeHhhH--HhcCCCccHHH
Confidence 3568999999999999999997 9999999999999999999999999854 6779999999999 68999 99999
Q ss_pred HHHHHHHhhccccccccccccccCCCCCccc--------eeec--CC-------------------------------C-
Q psy11240 160 LMSTIINLAQNFVGSNNINLLQPIGQFGTFL--------FIFE--ST-------------------------------N- 197 (363)
Q Consensus 160 l~~tiV~MAQdfvGSnNi~Ll~p~G~FGsr~--------Yi~t--s~-------------------------------P- 197 (363)
+|+|||+||||| |||+|||+|+|||||++ |||| || |
T Consensus 81 iydaiVrMAQdf--s~r~pLldgqGNFGS~dGd~aAA~RYte~rLs~ia~~ll~d~d~~tvdf~~nyDg~~~EP~vlp~~ 158 (496)
T 2nov_A 81 IYDAMVRMSQNW--KNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAA 158 (496)
T ss_dssp THHHHHHTTCTT--TSSSCSEEEESCSCCSSSCCCCCTTTCEEEECHHHHTTSTTCCCCCSCEEECSSSSSEEESSCCCS
T ss_pred HHHHHHHHhhhh--hcCceeecCCCCCCCCCCCcccccCceEEechHHHHHHhhhcccccccCCcCCCCCcCCCeecCcc
Confidence 999999999999 99999999999999998 9998 43 4
Q ss_pred CccccccCCCcccccc----------------------------------------------------------------
Q psy11240 198 LSGAVVNALDFGSGGW---------------------------------------------------------------- 213 (363)
Q Consensus 198 iP~vLvNGa~GIgtG~---------------------------------------------------------------- 213 (363)
+||||||||+||||||
T Consensus 159 iP~lLvNGs~GIavGmAT~IPphNl~Evi~a~~~~i~~~~~~~~~l~~~i~gPDFPtGgii~~~~gi~~~y~tGrG~~~~ 238 (496)
T 2nov_A 159 FPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVV 238 (496)
T ss_dssp SCHHHHHCEECCC-CCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHTTTCCSCCCTTCCEECCHHHHHHHHHHSEEECCE
T ss_pred CcHHHhcCCCchhcccccCCCCCCHHHHHHHHHHHhcCCCCChHHHHhhccCCCCCCCCEEeCchHHHHHhhcCCceEEE
Confidence 9999999999999999
Q ss_pred ------------------c------------------------cccccccccCCCceeEEEEEeCCCCChHHHHHhHhhh
Q psy11240 214 ------------------R------------------------FESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKV 251 (363)
Q Consensus 214 ------------------T------------------------~~I~d~~d~~~~~~v~f~I~l~~~~~~~~~~~~L~k~ 251 (363)
| .+|+||+|+|++++|||+|+|+++.+++.++++|+|.
T Consensus 239 rg~~~ie~~~~g~~~IvITElPy~v~~~~lie~I~~lv~~kki~~I~d~rDesd~~gvrivI~lk~~~~~~~vl~~L~k~ 318 (496)
T 2nov_A 239 RSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKY 318 (496)
T ss_dssp ECEEEEEECSTTCEEEEEEECCTTCCHHHHHHHTTHHHHTTSCC---CCEEC-----CCEEC----CCCCTTHHHHHHHS
T ss_pred EEEEEEEecCCCCCEEEEEeCCCCCcHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCCCHHHHHHHHHHh
Confidence 0 0599999999999999999999999999999999999
Q ss_pred ccceeeeccceEEEEecCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhcceeE-cc
Q psy11240 252 FKLQTTLAISSMCAFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRI-EN 330 (363)
Q Consensus 252 fkL~~s~~~~nm~lfd~~g~i~ky~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~~~i~i-~~ 330 (363)
|+||++|++ ||+++ .+|+| +|.|+.+||++|++||+++|+||++|+|+++++++|+|++..+++ ..|++.|.+ .+
T Consensus 319 t~Lq~s~~~-Nm~al-~~g~p-~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~-~~id~vI~iIr~ 394 (496)
T 2nov_A 319 TDLQINYNF-NMVAI-DNFTP-RQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVI-SILDEVIALIRA 394 (496)
T ss_dssp STTEECCEE-ECEEE-ETTEE-EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSHHHHHHHHTT
T ss_pred cCcceeeee-EEEEE-eCCeE-EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHh
Confidence 999999999 68888 68998 578999999999999999999999999999999999999998877 367888865 33
Q ss_pred c-chHHHHHHHHHcCCCCCCch
Q psy11240 331 R-KKKEMIAELIKRKYDSDPVK 351 (363)
Q Consensus 331 k-~k~~l~~~L~~~~f~~~~~~ 351 (363)
. .++++.+.|.+ +|+....+
T Consensus 395 s~~~~~a~~~L~~-~f~lse~q 415 (496)
T 2nov_A 395 SENKADAKENLKV-SYDFTEEQ 415 (496)
T ss_dssp SSSHHHHHSSCCC--CCCCHHH
T ss_pred CCCHHHHHHHHHH-hcCCCHHH
Confidence 3 36777777744 56655443
No 8
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=100.00 E-value=6.6e-69 Score=545.02 Aligned_cols=230 Identities=23% Similarity=0.333 Sum_probs=202.0
Q ss_pred cCCCCccccCCCCcceeeEeecccCCC---CCceeeeeehhhhhhhccCC-CCcchHHHHHHHhhccccccccccccccC
Q psy11240 108 ERSIPSLCDGLKPGSRKVLFTCLKRND---RREVKVAQLAGSVAEHSAYH-HGEQSLMSTIINLAQNFVGSNNINLLQPI 183 (363)
Q Consensus 108 ~RsIPsv~DGLKP~QRKILy~~~k~~~---k~~~KvAql~G~Vse~~~YH-HGe~Sl~~tiV~MAQdfvGSnNi~Ll~p~ 183 (363)
.||||||+||||||||||||+|+++++ ++++||||+||+| +++|| |||+|+|+|||+||||| |||+|||+|+
T Consensus 1 ~RALPdvrDGLKPvqRRILyam~~~~l~~~k~~~KsArvvG~V--~gkYHPHGD~SiydaiVrMAQdF--s~r~pLvdgq 76 (500)
T 3lpx_A 1 MRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDV--IGKYHPHGDTAVYDTIVRMAQPF--SLRYMLVDGQ 76 (500)
T ss_dssp --CCCBTTTCCCHHHHHHHHHHHHTTCCSSSCCEEHHHHHHHH--HHHTCCCCSSHHHHHHHHTTCTT--TCSSCSEEEE
T ss_pred CCCCCchhcCCCchhhHHHHHHHHhCCCCCCCceeEeeeHHhH--HhccCCCcHHHHHHHHHHHhhhh--hccccccccC
Confidence 499999999999999999999999875 8999999999999 67999 99999999999999999 9999999999
Q ss_pred CCCCccc--------eeec--CC-------------------------------C-CccccccCCCcccccc--------
Q psy11240 184 GQFGTFL--------FIFE--ST-------------------------------N-LSGAVVNALDFGSGGW-------- 213 (363)
Q Consensus 184 G~FGsr~--------Yi~t--s~-------------------------------P-iP~vLvNGa~GIgtG~-------- 213 (363)
|||||++ |||| || | +||||||||+||||||
T Consensus 77 GNFGS~dGd~aAAmRYteaRLs~ia~~ll~did~~tvdf~~NyDg~~~EP~vlp~~iP~lLvNGs~GIAvGmATnIPpHN 156 (500)
T 3lpx_A 77 GNFGSVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHN 156 (500)
T ss_dssp SCCCCTTCCCCCCGGGCEEEECHHHHTTSTTTTTTCSCEEECTTSSSEEESSCCCSSCHHHHHCC-------CCBCCCCC
T ss_pred CCCCCCCCCcccchhhHhHHHHHHHHHHHhhcCcccccCccCCCccccCHhhcCccccHhhccCCCccccceeccCCCCC
Confidence 9999998 9998 43 4 9999999999999999
Q ss_pred ---------------------------------------------------------------------------c----
Q psy11240 214 ---------------------------------------------------------------------------R---- 214 (363)
Q Consensus 214 ---------------------------------------------------------------------------T---- 214 (363)
|
T Consensus 157 l~EVida~~~li~~~~~~~~eLm~~i~gPDfPtgg~i~g~~gi~~~y~tGrG~i~~ra~~~ie~~~~~~~~~IvITElPy 236 (500)
T 3lpx_A 157 LTEVINACLALIDNSELTFEEILEHIPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRARASIDVHETTGKETIIVHELPY 236 (500)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCTTCCEECCHHHHHHHHHHSEEEEEEECEEEEEECTTTCCEEEEEEECCT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHhcCCCCCCCCCceEeCccchHHHhhcCCceEEEEEEEEEEecccCCCceEEEEecCC
Confidence 0
Q ss_pred --------------------cccccccccCCCceeEEEEEeCCCCChHHHHHhHhhhccceeeeccceEEEEecCCcccc
Q psy11240 215 --------------------FESNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTK 274 (363)
Q Consensus 215 --------------------~~I~d~~d~~~~~~v~f~I~l~~~~~~~~~~~~L~k~fkL~~s~~~~nm~lfd~~g~i~k 274 (363)
.+|+||+|+|++++|||+|+++++.+++.++++|+|.|+||++|++ ||++++ +|+|+
T Consensus 237 ~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~~~~l~~L~k~T~Lq~sf~~-Nm~al~-~g~pk- 313 (500)
T 3lpx_A 237 QVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSFGL-NMVALT-NGQPK- 313 (500)
T ss_dssp TCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEE-ECEEES-SSSEE-
T ss_pred ccCHHHHHHHHHHHHhcCCCCccccchhcCCCCceEEEEEECCCCCHHHHHHHHHHhcCCceeeee-eEEEEE-CCEeE-
Confidence 0689999999999999999999999999999999999999999998 699998 59995
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhcceeEccc--chHHHHHHHHHcCC
Q psy11240 275 FDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENR--KKKEMIAELIKRKY 345 (363)
Q Consensus 275 y~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~~~i~i~~k--~k~~l~~~L~~~~f 345 (363)
+.|+.|||++|++||+++|+||++|+|+++++|+|+|++... +...||..|.|.+. ..++..+.|.++++
T Consensus 314 ~~~l~eiL~~f~~~R~evv~rR~~~~L~ka~~R~hileGl~~-a~~~iDevI~iIR~s~~~~~Ak~~L~~~~w 385 (500)
T 3lpx_A 314 IFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSI-ALANIDPIIEMIKNSNNRKESEEKLISQGW 385 (500)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTHHHHHTTTTTCSSHHHHHHHHHSSCC
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 679999999999999999999999999999999999999874 66789999988664 45666777776543
No 9
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=100.00 E-value=2.3e-68 Score=539.88 Aligned_cols=236 Identities=22% Similarity=0.312 Sum_probs=208.4
Q ss_pred Hh-hccCCCCccccCCCCcceeeEeecccCC---CCCceeeeeehhhhhhhccCC-CCcchHHHHHHHhhcccccccccc
Q psy11240 104 NM-DNERSIPSLCDGLKPGSRKVLFTCLKRN---DRREVKVAQLAGSVAEHSAYH-HGEQSLMSTIINLAQNFVGSNNIN 178 (363)
Q Consensus 104 ~~-~~~RsIPsv~DGLKP~QRKILy~~~k~~---~k~~~KvAql~G~Vse~~~YH-HGe~Sl~~tiV~MAQdfvGSnNi~ 178 (363)
|| +..||||||+||||||||||||+||+++ +++++|||++||+| +|+|| |||+|+|+|||+||||| |+|+|
T Consensus 3 msVI~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V--~gkYHPHGD~SiydaiVrmAQ~f--~~r~p 78 (470)
T 3ilw_A 3 ASVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAET--MGNYHPHGDASIYDSLVRMAQPW--SLRYP 78 (470)
T ss_dssp ----CTTTSCBTTTCCCHHHHHHHHHHHHHTCCTTSCCEEHHHHHHHH--HHHTCCCCSTHHHHHHHHHHCTT--TCSSC
T ss_pred ceEEccccCCchhcCCCchhhHHHHHHHHhCCCCCCCeeehHHHHHHH--HHhhCCCcHHHHHHHHHHHhhHh--hcCcc
Confidence 56 4899999999999999999999999975 56889999999999 67999 99999999999999999 88999
Q ss_pred ccccCCCCCccc--------eeec--CC-------------------------------C-CccccccCCCcccccc---
Q psy11240 179 LLQPIGQFGTFL--------FIFE--ST-------------------------------N-LSGAVVNALDFGSGGW--- 213 (363)
Q Consensus 179 Ll~p~G~FGsr~--------Yi~t--s~-------------------------------P-iP~vLvNGa~GIgtG~--- 213 (363)
||+|+|||||++ |||| || | +||||||||+||||||
T Consensus 79 LldgqGNFGS~~Gd~aAA~RYte~rLs~ia~~ll~d~d~~tvdf~~nyDg~~~EP~vlp~~iP~lLvNGs~GIavGmAT~ 158 (470)
T 3ilw_A 79 LVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 158 (470)
T ss_dssp SEEEESCCCCSSSCCCCCTTSCEEEECHHHHHHHTTGGGTCSCEEECTTSSSEEESSCCCSSCHHHHHCEECSSTTCSCE
T ss_pred eeecCCCCCCCCCCccccccceeeehhHHHHHHHHhcCcchhcCccCcCCCccCCCcccccccHHHhcCCCccccceecC
Confidence 999999999998 9998 53 4 9999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy11240 214 -------------------------------------------------------------------------------- 213 (363)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (363)
T Consensus 159 IPphNl~Evi~a~~~~i~~~~~~~~~~~~~l~~~i~gPDFPTGG~I~g~~gi~~~y~tGrG~i~~rg~~~ie~~~~~~~~ 238 (470)
T 3ilw_A 159 IPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTS 238 (470)
T ss_dssp ECCCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHCCSCCCTTCCEEECSHHHHHHHHHSEEEEEEECEEEEEECTTCCEE
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCcccCHHHHhhcccCCCCCCCcEEECccchHHHHhcCCceEEEEEEEEEEeccCCCCE
Confidence
Q ss_pred ---c------------------------ccccccccc-CCCceeEEEEEeCCCCChHHHHHhHhhhccceeeeccceEEE
Q psy11240 214 ---R------------------------FESNDYKEY-HTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCA 265 (363)
Q Consensus 214 ---T------------------------~~I~d~~d~-~~~~~v~f~I~l~~~~~~~~~~~~L~k~fkL~~s~~~~nm~l 265 (363)
| .+|+||+|+ |++++|||+|+++++.+++.++++|+|.|+||++|++ ||++
T Consensus 239 ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~~gvrivI~lk~~~~~~~~l~~L~k~t~Lq~s~~~-Nm~a 317 (470)
T 3ilw_A 239 LVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGA-NMLA 317 (470)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEE-ECEE
T ss_pred EEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCCCceEEEEEECCCCCHHHHHHHHHHhccchheece-eeeE
Confidence 0 058999999 7778999999999999999999999999999999998 6888
Q ss_pred EecCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhcceeEcc--cchHHHHHHHHHc
Q psy11240 266 FDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIEN--RKKKEMIAELIKR 343 (363)
Q Consensus 266 fd~~g~i~ky~~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~~~i~i~~--k~k~~l~~~L~~~ 343 (363)
++ +|+|+ +.|+.|||++|++||+++|+||++|+|+++++++|+|++....+ ..|+..|.+.. +.+++..+.|.+.
T Consensus 318 l~-~g~p~-~~~l~eiL~~f~~~R~~~~~rR~~~~L~k~~~r~hilegl~~a~-~~iD~vI~iIr~s~~~~~a~~~L~~~ 394 (470)
T 3ilw_A 318 IV-DGVPR-TLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKAL-DALDEVIALIRASETVDIARAGLIEL 394 (470)
T ss_dssp EE-TTEEE-ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred EE-CCeee-ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 88 79985 67999999999999999999999999999999999999987765 56777777644 4557777777553
Q ss_pred CCCCC
Q psy11240 344 KYDSD 348 (363)
Q Consensus 344 ~f~~~ 348 (363)
|.-.
T Consensus 395 -f~ls 398 (470)
T 3ilw_A 395 -LDID 398 (470)
T ss_dssp -HTCC
T ss_pred -cCCC
Confidence 4433
No 10
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=100.00 E-value=3.3e-65 Score=537.03 Aligned_cols=222 Identities=21% Similarity=0.293 Sum_probs=191.2
Q ss_pred cCCCCccccCCCCcceeeEeecccCC---CCCceeeeeehhhhhhhccCC-CCcchHHHHHHHhhccccccccccccccC
Q psy11240 108 ERSIPSLCDGLKPGSRKVLFTCLKRN---DRREVKVAQLAGSVAEHSAYH-HGEQSLMSTIINLAQNFVGSNNINLLQPI 183 (363)
Q Consensus 108 ~RsIPsv~DGLKP~QRKILy~~~k~~---~k~~~KvAql~G~Vse~~~YH-HGe~Sl~~tiV~MAQdfvGSnNi~Ll~p~ 183 (363)
.|||||++||||||||||||+|++++ +++++||||+||+| +++|| |||+|+|+|||+||||| |||+|||+|+
T Consensus 2 ~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V--~gkYHPHGD~SiydaiVrmAQ~f--s~r~pLldg~ 77 (716)
T 1zvu_A 2 DRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDV--LGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQ 77 (716)
T ss_dssp CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHH--HTTTSCTTCHHHHHHHHHHTSTT--SCSSCSEEEC
T ss_pred CCCCCchhcCCChHHHHHHHHHhhhCCcCCCCceeeHHHHHHH--HHhcCCccHHHHHHHHHHHhhcc--cccceeeecC
Confidence 69999999999999999999999986 46788999999999 68999 99999999999999999 9999999999
Q ss_pred CCCCccc---------eeec--CC-------------------------------C-CccccccCCCcccccc-------
Q psy11240 184 GQFGTFL---------FIFE--ST-------------------------------N-LSGAVVNALDFGSGGW------- 213 (363)
Q Consensus 184 G~FGsr~---------Yi~t--s~-------------------------------P-iP~vLvNGa~GIgtG~------- 213 (363)
||||||+ |||| || | +||||||||+||||||
T Consensus 78 GNFGS~dgd~a~AA~RYte~rLs~ia~~ll~~~d~~tvdf~~n~Dg~~~EP~vlp~~iP~lLvNGa~GIavGmaT~IPph 157 (716)
T 1zvu_A 78 GNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 157 (716)
T ss_dssp SCCSSSSSCCCTTSSCGGGEEECGGGHHHHTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCB
T ss_pred CCCCCCCCCccccccCceEEcchHHHHHHHhhcCccccccccCCCCCcCCchhccccccHHHHcCCCccccceecCCCCC
Confidence 9999999 9998 54 4 9999999999999999
Q ss_pred -----------------------------------------------------------------------c--------
Q psy11240 214 -----------------------------------------------------------------------R-------- 214 (363)
Q Consensus 214 -----------------------------------------------------------------------T-------- 214 (363)
|
T Consensus 158 Nl~Evi~a~~~li~~~~~~~~~l~~~i~gPdFptgG~I~~~~~gI~~aY~tGrG~i~~rg~~~ie~~~ivITElPy~v~~ 237 (716)
T 1zvu_A 158 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSG 237 (716)
T ss_dssp CHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSSSEECSCTTHHHHHHHHTEEEEEEECEEEEETTEEEEEECCTTCCH
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCceEEecCchHHHHHhhcCCceEEEEEEEEEECCEEEEEeCCCCCCH
Confidence 0
Q ss_pred ----------------cccccccccCCC-ceeEEEEEeCC-CCChHHHHHhHhhhccceeeeccceEEEEecCCcccccC
Q psy11240 215 ----------------FESNDYKEYHTD-TTVKFVVTMSP-DKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFD 276 (363)
Q Consensus 215 ----------------~~I~d~~d~~~~-~~v~f~I~l~~-~~~~~~~~~~L~k~fkL~~s~~~~nm~lfd~~g~i~ky~ 276 (363)
.+|+||+|+|++ ++|||+|++++ +..++.+++.|++.|+||++|++ ||++||.+|+|+ +.
T Consensus 238 ~~lie~I~~l~~~kki~~I~d~rDes~~~~gvrivI~lk~~~~~~~~vl~~L~k~T~Lq~sf~~-Nm~~l~~~g~p~-~~ 315 (716)
T 1zvu_A 238 ARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGRPA-VK 315 (716)
T ss_dssp HHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEE-ECEEECTTSCEE-EC
T ss_pred HHHHHHHHHHHhcCCCccccchhhccCCCCcEEEEEEECccCCCHHHHHHHHHHhcchhheeec-eeEEEccCCeee-EC
Confidence 069999999987 58999999998 57788899999999999999998 799999999996 67
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHhhhcceeE---cccchHHHH
Q psy11240 277 TTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQA-RFIVEKCDGDLRI---ENRKKKEMI 337 (363)
Q Consensus 277 ~~~eIl~~F~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~-rFI~~vi~~~i~i---~~k~k~~l~ 337 (363)
|+.|||++|++||+++|+||++|+|+++++++|+|++.. .| ..|+..|.+ ++.+|+.|+
T Consensus 316 ~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~--~~iDeVI~iIR~s~~~k~~L~ 378 (716)
T 1zvu_A 316 NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAF--LNIDEVIEIIRNEDEPKPALM 378 (716)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--hhHHHHHHHHHhcCchHHHHH
Confidence 999999999999999999999999999999999999964 44 234444444 334555544
No 11
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=98.92 E-value=5.5e-10 Score=106.34 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=50.0
Q ss_pred CCcceeeccccccCCcHHHHHHhhhhh-cceeeeEEcCCCch-HHHHHhcCCcchhhHHHHHHHhH
Q psy11240 2 NTIHDVMIAGLGTSTSKEAKEYFSNME-RHRILFKYSGDNDD-AHIRMAFSKKLVDERKTWLTTWM 65 (363)
Q Consensus 2 ~~w~iKYyKGLGTst~~eakeyF~~l~-~h~~~f~~~~~~d~-~~i~~aF~kk~~d~RK~Wl~~~~ 65 (363)
++|+|+||||||+++++|.+|+|-|.+ |+++++..++..+. +.++| |..+++++||+||.+..
T Consensus 194 ~~~~IqryKGLGEm~~~qlweTtmdP~~R~L~~Vti~da~~a~~~f~~-LMG~~v~~Rk~fI~~~a 258 (268)
T 3k9f_C 194 KGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNV-LMGDKVEPRRKWIEDNV 258 (268)
T ss_dssp TTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSCSHHHHHHHHH-HHSSCCHHHHHHHHHHC
T ss_pred CCCCceEecCCCccCHHHHHHHhcCccceeEEEEEcCcHHHHHHHHHH-HcCCCcHHHHHHHHHHh
Confidence 479999999999999999999999986 45678887654433 44555 55567999999998764
No 12
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=98.87 E-value=4.9e-10 Score=105.44 Aligned_cols=60 Identities=23% Similarity=0.120 Sum_probs=38.1
Q ss_pred cceeeccccccCCcHHHHHHhhhhhcceeeeEEcCCCchHHHHHhcCC---cchhhHHHHHHHhH
Q psy11240 4 IHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSK---KLVDERKTWLTTWM 65 (363)
Q Consensus 4 w~iKYyKGLGTst~~eakeyF~~l~~h~~~f~~~~~~d~~~i~~aF~k---k~~d~RK~Wl~~~~ 65 (363)
|+|+||||||+++++|++|||-|.+.+++... ..+|...++.+|+. +++++||+||.+..
T Consensus 172 ~~IqryKGLGEm~~~ql~ettmdp~~R~L~~V--~i~d~~~a~~~f~~LMG~~v~~Rk~~I~~~~ 234 (242)
T 3m4i_A 172 DGIQRYKGLGEMDAKELWETTMDPSVRVLRQV--TLDDAAAADELFSILMGEDVDARRSFITRNA 234 (242)
T ss_dssp TSEEECSCGGGSCHHHHHHHHTCTTTCCEEEC--CHHHHHHHHHHHHHHHHC-------------
T ss_pred cccceEcCcCCCCHHHHHHHhcCccceeeEEe--ccCcHHHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence 39999999999999999999999887654443 34566778888885 78999999998764
No 13
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=94.42 E-value=0.011 Score=52.27 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhcceeEcc--cchHHHHHHHHHc
Q psy11240 286 YAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIEN--RKKKEMIAELIKR 343 (363)
Q Consensus 286 ~~~Rl~~y~kRk~~~l~~l~~~~~~l~nk~rFI~~vi~~~i~i~~--k~k~~l~~~L~~~ 343 (363)
+-||.++++||+.|.|+++++++|+|+|... ....||..|.|.+ +..++..+.|...
T Consensus 14 ~~hR~eVVtRRt~f~L~Ka~~R~HILEGL~i-Al~nIDeVI~iIR~S~~~~eAk~~Lm~~ 72 (156)
T 3ku8_A 14 LVPRGSHMTRRTIFELRKARDRAHILEALAV-ALANIDPIIELIRHAPTPAEAKTALVAN 72 (156)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHCSSHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4589999999999999999999999999866 3466888888864 3455666667653
No 14
>3ush_A Uncharacterized protein; DUF2237, PF09996, PSI-biology, NESG, structural genomics, no structural genomics consortium, unknown function; 1.69A {Salinibacter ruber}
Probab=31.29 E-value=19 Score=30.88 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhh-ccCC--CCcc-ccCCCCcceeeEee
Q psy11240 93 EFVNKELILFSNMD-NERS--IPSL-CDGLKPGSRKVLFT 128 (363)
Q Consensus 93 dfinkeli~yS~~~-~~Rs--IPsv-~DGLKP~QRKILy~ 128 (363)
..|..|++.||.+. |.=| .|.. --|||||+|=-|=+
T Consensus 41 a~mT~eFL~fSk~~GNDLsTP~Pe~~FpGLkpGDrWCLCA 80 (129)
T 3ush_A 41 AEMTEAFLEYTKRQGNDLMTPRPEMDFPGLEPGDRWCLCA 80 (129)
T ss_dssp EECCHHHHHHHHHTTCCCSSCBGGGTBCCCCTTCEEEECH
T ss_pred hhchHHHHHHHHHhCCCCCCCCcccCCCCCCCCCeEEeeH
Confidence 44678999999983 4444 4443 47999999976643
No 15
>2lq3_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI:biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=26.72 E-value=28 Score=29.84 Aligned_cols=35 Identities=34% Similarity=0.536 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhh-cc--CCCCcc-ccCCCCcceeeEe
Q psy11240 93 EFVNKELILFSNMD-NE--RSIPSL-CDGLKPGSRKVLF 127 (363)
Q Consensus 93 dfinkeli~yS~~~-~~--RsIPsv-~DGLKP~QRKILy 127 (363)
-.|..|++.||.+. |. -..|.. --|||||+|=-|=
T Consensus 43 a~mT~eFL~fsk~~GNDLsTP~Pe~~FpGLkpGDrWClC 81 (130)
T 2lq3_A 43 AEMTEEFLLFSRDRGNDLMTPRPEFNFPGLKAGDRWCLC 81 (130)
T ss_dssp CCCCHHHHHHHHHHHSCSSCSSSSCCCSSCCTTCCSSCC
T ss_pred HhhhHHHHHHHHHhCCCCCCCCcccCCCCCCCCCeeEee
Confidence 34678999999983 44 444443 2799999996553
Done!