RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11240
(363 letters)
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 183 bits (466), Expect = 5e-52
Identities = 134/178 (75%), Positives = 154/178 (86%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTST+KEAKEYF++MERHRILF+Y+G DDA I +AFSKK +D+RK WLT +ME+ R+
Sbjct: 213 GLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFSKKKIDDRKEWLTNFMEDRRQ 272
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
R+ G+ E +LY TK +TY +F+NKELILFSN DNERSIPSL DG KPG RKVLFTC
Sbjct: 273 RRLHGLPEQFLYGTATKHLTYNDFINKELILFSNSDNERSIPSLVDGFKPGQRKVLFTCF 332
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGT 188
KRND+REVKVAQLAGSVAE SAYHHGEQ+LM TI+NLAQNFVGSNNINLLQPIGQFGT
Sbjct: 333 KRNDKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGT 390
Score = 174 bits (442), Expect = 1e-48
Identities = 87/142 (61%), Positives = 107/142 (75%)
Query: 219 DYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDTT 278
DYKEYHTDTTVKFVV M+ +KL +AE GLHKVFKLQTTL +SM FD G L K++T
Sbjct: 554 DYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETV 613
Query: 279 NQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMIA 338
ILKEF+ +RL YY RK++L G+LGAE+ KL NQARFI+EK G + IENR KK++I
Sbjct: 614 QDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQ 673
Query: 339 ELIKRKYDSDPVKSWKMKQNKE 360
L++R Y+SDPVK+WK Q K
Sbjct: 674 MLVQRGYESDPVKAWKEAQEKA 695
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 167 bits (425), Expect = 1e-46
Identities = 96/180 (53%), Positives = 118/180 (65%), Gaps = 12/180 (6%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
GLGTS ++E +EYFSN++RH +F ND +I +AFSKK D+RK WL +
Sbjct: 184 GLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYEP---- 239
Query: 71 RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
+ T K I ++F+NKELILFS DN RSIP++ DG KPG RKVL+ C
Sbjct: 240 --------GTVLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCF 291
Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
K+N + E+KVAQLA V+E +AYHHGEQSL TII LAQNFVGSNNI LL P G FGT
Sbjct: 292 KKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRA 351
Score = 159 bits (403), Expect = 2e-43
Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Query: 217 SNDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFD 276
D +E H D +KF++T+SP+++ K G ++ FKL + +++ +M AFD +G + K++
Sbjct: 510 IKDMEEQHDDN-IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYN 568
Query: 277 TTNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEM 336
+ N+IL EFY VRLEYY KRKD++ L E K + Q +FI + +L + N+ + +
Sbjct: 569 SVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAI 628
Query: 337 IAELIKRKYD-----SDPVKSWKMKQNKE 360
I EL + P + E
Sbjct: 629 IQELENLGFPRFNKEGKPYYGSPNDEIAE 657
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 5e-05
Identities = 74/411 (18%), Positives = 127/411 (30%), Gaps = 150/411 (36%)
Query: 11 GLGTSTSKEAKEYFSNMERHRILFK-YSGDNDDAHIRMA-----FSKKLVDERKTW---- 60
G G + +YF + R L++ Y D A + +D K +
Sbjct: 162 GQGNTD-----DYFEEL---RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 61 -LTTWMEECRRRKEMGIGEDYL-----------------YTKTTKAITYT--EF------ 94
+ W+E +DYL Y T K + +T E
Sbjct: 214 NILEWLENPSNTP----DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 95 ---VNKELI---LFSNMDNERS-IPSLCDGLKPGSRKVLF----TCLKRNDRREVKVAQL 143
++ L+ + D+ S S+ + VLF C + + + L
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAIT-----VLFFIGVRCYEAYPNTSLPPSIL 324
Query: 144 AGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFLFIFESTNLSGAVV 203
S+ E++ G S M +I NL Q + + + + L + ++V
Sbjct: 325 EDSL-ENN---EGVPSPMLSISNLTQEQ-------VQDYVNKTNSHLP--AGKQVEISLV 371
Query: 204 NALDFGSGGWRFESNDYKEYHTDTTVKFVVTMSPDKLH---------KAEMDGL--HKV- 251
N VV+ P L+ KA GL ++
Sbjct: 372 NGAK----------------------NLVVSGPPQSLYGLNLTLRKAKAP-SGLDQSRIP 408
Query: 252 F---KLQTT---LAISSMCAF-DRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVL 304
F KL+ + L ++ F L ++ I K+ + + AK
Sbjct: 409 FSERKLKFSNRFLPVA--SPFHSHL--LV--PASDLINKDLVKNNVSFNAK--------- 453
Query: 305 GAEALKLTNQARFIVEK-CDG-DLRIENRKKKEMIAELIKRKYDSDPVKSW 353
+++ V DG DLR+ + E I + I R PVK W
Sbjct: 454 ---DIQIP------VYDTFDGSDLRVLSGSISERIVDCIIR----LPVK-W 490
Score = 39.3 bits (91), Expect = 0.002
Identities = 43/270 (15%), Positives = 89/270 (32%), Gaps = 92/270 (34%)
Query: 3 TIH--DVMIAGLGTSTSKEAKEYFSNMERH-RILFKYSGDNDDAHIRMAFSKKLVDERKT 59
T H + + + + + + +F ++ + +LF + G A+ +
Sbjct: 271 TGHSQGL-VTAVAIAETDSWESFFVSVRKAITVLF-FIG----VRCYEAYPNTSLPP--- 321
Query: 60 WLTTWMEECRRRKE-----M----GIGEDYLYTKTTKAITYTEFVNKEL-----ILFSNM 105
+ +E+ E M + ++ + + T N L + S +
Sbjct: 322 ---SILEDSLENNEGVPSPMLSISNLTQEQV----QDYVNKT---NSHLPAGKQVEISLV 371
Query: 106 DNERSI-----P-SLCDGLKPGSRKVLFTCLKRNDRREVKVAQ---------LAGSVAEH 150
+ +++ P SL GL RK D+ + ++ L + H
Sbjct: 372 NGAKNLVVSGPPQSLY-GLNLTLRKA--KAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 151 SAYHHGEQSLMSTIINLAQNFVGSNNINL----LQ-PIGQFGTF----LFIFESTNLSGA 201
S L+ +L + NN++ +Q P+ + TF L + S ++S
Sbjct: 429 S-------HLLVPASDLINKDLVKNNVSFNAKDIQIPV--YDTFDGSDLRVL-SGSISER 478
Query: 202 VVNA-------------------LDFGSGG 212
+V+ LDFG GG
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Score = 37.0 bits (85), Expect = 0.010
Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 69/209 (33%)
Query: 145 GSVAEHS------AYHHGEQ-------SLMSTIINLAQNFVGSNNINLL----------- 180
GS+ EH ++ Q L A + + L+
Sbjct: 14 GSL-EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 181 --QPIGQFGTFLFI----FESTNLSG----AVVNALDFGSGGWRFESNDY-KEYHT--DT 227
+GQF L + FE+ L G A+ L + ++ + K Y T
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 228 TVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAF------DRYGVLTKFDTTNQI 281
+ S L +A +G ++ AI F D Y F+
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLV------AI-----FGGQGNTDDY-----FEE---- 172
Query: 282 LKEFYAVRLEYYAKRKDYLEGVLGAEALK 310
L++ Y Y+ D ++ AE L
Sbjct: 173 LRDLYQT---YHVLVGDLIKFS--AETLS 196
Score = 35.8 bits (82), Expect = 0.023
Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 52/167 (31%)
Query: 11 GLGT---STSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFS-KKLVDERKTWLTTWME 66
G+G TSK A++ ++ + H G FS +V LT
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNH--FKDTYG----------FSILDIVINNPVNLTIHFG 1677
Query: 67 ECRRRKEMGIGEDY---LYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSR 123
+ ++ I E+Y ++ TE + KE+ NE S S +
Sbjct: 1678 GEKGKR---IRENYSAMIFETIVDGKLKTEKIFKEI-------NEHS-TSYTFR---SEK 1723
Query: 124 KVL----FT-------------CLKRNDRREVKVAQLAG-SVAEHSA 152
+L FT LK AG S+ E++A
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT-FAGHSLGEYAA 1769
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 5e-04
Identities = 45/298 (15%), Positives = 85/298 (28%), Gaps = 89/298 (29%)
Query: 2 NTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDA-----------HIRMAFS 50
T H + T T E K KY + + +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLL---------KYLDCRPQDLPREVLTTNPRRLSI-IA 334
Query: 51 KKLVDERKTW----------LTTWMEEC---------RRR-KEMGI-GEDYLYTKTTKAI 89
+ + D TW LTT +E R+ + + ++
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 90 TY------------TEFVNKELILFSNMDNERSIPSL-------CDGLKPGSRKVL--FT 128
+ + L+ ++ SIPS+ + R ++ +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 129 CLKRNDRREVKVAQLAGSVAEHSAYH-----HGEQSLMSTIINLAQNFVG---------- 173
K D ++ L H +H H E+ + ++ L F+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 174 ---SNNINLLQPIGQFGTFL-FIFESTNLSGAVVNAL-DFGSGGWRFESNDYKEYHTD 226
+ +N LQ Q + +I ++ +VNA+ DF + E N +TD
Sbjct: 515 NASGSILNTLQ---QLKFYKPYICDNDPKYERLVNAILDFLP---KIEENLICSKYTD 566
Score = 32.5 bits (73), Expect = 0.23
Identities = 32/237 (13%), Positives = 68/237 (28%), Gaps = 78/237 (32%)
Query: 1 MNTIHDVMIAGLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTW 60
+ TI + + L E ++ F + +F AHI
Sbjct: 355 LTTIIESSLNVL---EPAEYRKMFDRLS----VF-----PPSAHI----------PTILL 392
Query: 61 LTTW-----------MEEC-------RRRKEMGIGEDYLYTKTTKAITYTEFVNKELI-- 100
W + + ++ KE I +Y + + +++ ++
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 101 --LFSNMDNERSIPSLCDG------------LKPGSRKVLFTCLKRNDR------REVKV 140
+ D++ IP D ++ R LF + + R R
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 141 AQLA-GSVAE---------------HSAYHHGEQSLMSTIINLAQNFVGSNNINLLQ 181
A A GS+ Y +++ + + +N + S +LL+
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding,
isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia
psychrerythraea} PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Length = 500
Score = 38.3 bits (90), Expect = 0.003
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLKRN---DRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DGLKP R+VLF ++ K A++ G V YH HG+ ++ TI
Sbjct: 2 RALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVI--GKYHPHGDTAVYDTI 59
Query: 165 INLAQNF 171
+ +AQ F
Sbjct: 60 VRMAQPF 66
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic
resistance, breakage-reunion domain, struct genomics;
HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB:
3ifz_A*
Length = 470
Score = 37.1 bits (87), Expect = 0.008
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLK---RNDRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DGLKP R+VL+ R DR K A+ + YH HG+ S+ ++
Sbjct: 9 RALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGN--YHPHGDASIYDSL 66
Query: 165 INLAQNF 171
+ +AQ +
Sbjct: 67 VRMAQPW 73
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 36.9 bits (86), Expect = 0.009
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLK---RNDRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DGLKP R++L+ + D+ K A++ G V YH HG+ S+ +
Sbjct: 234 RALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVM--GKYHPHGDSSIYEAM 291
Query: 165 INLAQNF 171
+ +AQ+F
Sbjct: 292 VRMAQDF 298
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV,
GRAM-positive bacteria, quinolone target, DNA binding,
DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae}
PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
3rad_A* 3rae_A* 3raf_A*
Length = 496
Score = 36.3 bits (85), Expect = 0.012
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 108 ERSIPSLCDGLKPGSRKVLFTCLKRN---DRREVKVAQLAGSVAEHSAYH-HGEQSLMST 163
+R++P + DGLKP R++L++ K + D+ K A+ G++ +H HG+ S+
Sbjct: 27 DRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIM--GNFHPHGDSSIYDA 84
Query: 164 IINLAQNF 171
++ ++QN+
Sbjct: 85 MVRMSQNW 92
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
2.80A {Staphylococcus aureus}
Length = 514
Score = 36.0 bits (84), Expect = 0.017
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 108 ERSIPSLCDGLKPGSRKVLFTCLKRN---DRREVKVAQLAGSVAEHSAYH-HGEQSLMST 163
ER++P + DGLKP R++L+ D+ K A+ G V YH HG+ S+
Sbjct: 51 ERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVI--GQYHPHGDSSVYEA 108
Query: 164 IINLAQNF 171
++ L+Q++
Sbjct: 109 MVRLSQDW 116
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 35.4 bits (82), Expect = 0.032
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLK---RNDRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DGLKP R++++ + ++ + K A+ G V YH HG+ + +
Sbjct: 297 RALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVL--GKYHPHGDSACYEAM 354
Query: 165 INLAQNF 171
+ +AQ F
Sbjct: 355 VLMAQPF 361
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 35.2 bits (82), Expect = 0.037
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 109 RSIPSLCDGLKPGSRKVLFTCLK---RNDRREVKVAQLAGSVAEHSAYH-HGEQSLMSTI 164
R++P + DGLKP R++++ + + K A+ G V YH HG+ + +
Sbjct: 3 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVL--GKYHPHGDSACYEAM 60
Query: 165 INLAQNF 171
+ +AQ F
Sbjct: 61 VLMAQPF 67
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos
taurus} PDB: 3a7u_A
Length = 347
Score = 28.8 bits (64), Expect = 2.7
Identities = 22/108 (20%), Positives = 35/108 (32%), Gaps = 17/108 (15%)
Query: 58 KTWLTTWMEECRR------RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSI 111
W + R R+ G G Y I T F K+ D ++
Sbjct: 53 NPWQECNLNLMREEGVKLARRRSGGGTVYH---DMGNINLTFFTTKK-----KYDRMENL 104
Query: 112 PSLCDGLKPGSRKVLFTCLKRND---RREVKVAQLAGSVAEHSAYHHG 156
+ LK + KR D + K++ A + ++AYHH
Sbjct: 105 KLVVRALKAVHPHLDVQATKRFDLLLDGQFKISGTASKIGRNAAYHHC 152
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase;
fructose-1,6-/sedoheptulose-1,7-bisphosphatase,
hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB:
3rpl_A*
Length = 379
Score = 28.9 bits (65), Expect = 2.9
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 10/58 (17%)
Query: 301 EGVLGAEALKLTN---QARFIVEKCDGDLRIENRKK-------KEMIAELIKRKYDSD 348
EGV+ A A++ Q + I + + + M + + Y+ +
Sbjct: 259 EGVISAAAMRCLGGHFQGQLIYDPEVVKTGLIGESREGNLERLASMGIKNPDQVYNCE 316
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 27.1 bits (60), Expect = 3.1
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 13 GTSTSKEAKEYFSNMERHRILFKYSGDNDD 42
G+S S++ + F+N E ++++ Y+ NDD
Sbjct: 4 GSSGSRDIR--FANHETLQVIYPYTPQNDD 31
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 7.0
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 337 IAELIKRKYDSDPVKSWKMKQNKE 360
IA+ + + + ++ W+ +Q K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKR 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.387
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,484,573
Number of extensions: 325357
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 30
Length of query: 363
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 268
Effective length of database: 4,049,298
Effective search space: 1085211864
Effective search space used: 1085211864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)