RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11240
         (363 letters)



>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score =  111 bits (278), Expect = 2e-27
 Identities = 96/181 (53%), Positives = 118/181 (65%), Gaps = 12/181 (6%)

Query: 11  GLGTSTSKEAKEYFSNMERHRILFKYSGDNDDAHIRMAFSKKLVDERKTWLTTWMEECRR 70
           GLGTS ++E +EYFSN++RH  +F     ND  +I +AFSKK  D+RK WL  +      
Sbjct: 186 GLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYEPGT-- 243

Query: 71  RKEMGIGEDYLYTKTTKAITYTEFVNKELILFSNMDNERSIPSLCDGLKPGSRKVLFTCL 130
                     +   T K I  ++F+NKELILFS  DN RSIP++ DG KPG RKVL+ C 
Sbjct: 244 ----------VLDPTLKEIPISDFINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCF 293

Query: 131 KRNDRREVKVAQLAGSVAEHSAYHHGEQSLMSTIINLAQNFVGSNNINLLQPIGQFGTFL 190
           K+N + E+KVAQLA  V+E +AYHHGEQSL  TII LAQNFVGSNNI LL P G FGT  
Sbjct: 294 KKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRA 353

Query: 191 F 191
            
Sbjct: 354 T 354



 Score = 71.4 bits (174), Expect = 3e-14
 Identities = 45/146 (30%), Positives = 80/146 (54%)

Query: 218 NDYKEYHTDTTVKFVVTMSPDKLHKAEMDGLHKVFKLQTTLAISSMCAFDRYGVLTKFDT 277
               E   D  +KF++T+SP+++ K    G ++ FKL + +++ +M AFD +G + K+++
Sbjct: 512 IKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNS 571

Query: 278 TNQILKEFYAVRLEYYAKRKDYLEGVLGAEALKLTNQARFIVEKCDGDLRIENRKKKEMI 337
            N+IL EFY VRLEYY KRKD++   L  E  K + Q +FI    + +L + N+ +  +I
Sbjct: 572 VNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAII 631

Query: 338 AELIKRKYDSDPVKSWKMKQNKENAL 363
            EL    +     +      +  + +
Sbjct: 632 QELENLGFPRFNKEGKPYYGSPNDEI 657


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score =  108 bits (272), Expect = 7e-27
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 108 ERSIPSLCDGLKPGSRKVLFTCLKRN---DRREVKVAQLAGSVAEHSAYH-HGEQSLMST 163
            R++P + DGLKP  R+VL+         ++   K A++ G V     YH HG+ ++  T
Sbjct: 2   GRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI--GKYHPHGDSAVYDT 59

Query: 164 IINLAQNFVGSNNINLLQPIGQFGT 188
           I+ +AQ F  S    L+   G FG+
Sbjct: 60  IVRMAQPF--SLRYMLVDGQGNFGS 82


>d2i0ka1 d.58.32.3 (A:274-613) Cholesterol oxidase {Brevibacterium
           sterolicum [TaxId: 1702]}
          Length = 340

 Score = 26.5 bits (58), Expect = 5.0
 Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 269 YGVLTKFDTTNQILKEF---YAVRLEYYAKRKDY 299
             V+T       ++ +F   +  R+E+Y  + ++
Sbjct: 162 GAVVTSRANIATVINDFTEWFHERIEFYRAKGEF 195


>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
           domain {Simian virus 40 [TaxId: 10633]}
          Length = 362

 Score = 26.2 bits (57), Expect = 6.6
 Identities = 14/98 (14%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 253 KLQTTLAISSMC--AFDRYGVLTKFDTTNQILKEFYAVRLEYYAKRKDYLEGVLGAEA-L 309
           KL T  A+ + C       G+  +F  + ++  +   ++ E  +  K + +    A    
Sbjct: 6   KLVTEYAMETKCDDVLLLLGMYLEFQYSFEMCLK--CIKKEQPSHYKYHEKHYANAAIFA 63

Query: 310 KLTNQARFIVEKCDGDLRIENRKKKEM-IAELIKRKYD 346
              NQ     +  D  L  +     ++   +++  +++
Sbjct: 64  DSKNQKTICQQAVDTVLAKKRVDSLQLTREQMLTNRFN 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,320,177
Number of extensions: 60889
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 8
Length of query: 363
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,226,816
Effective search space: 339828032
Effective search space used: 339828032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)