BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11241
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H2B|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Baicalin
Length = 547
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 91/130 (70%), Gaps = 3/130 (2%)
Query: 7 NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFL 66
NL DEIT++ E D+L + V+ +IAL H+G ++D+ +A+ + V +VVGGHS+TFL
Sbjct: 188 NLVFEDEITALQPEVDKL-KTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFL 246
Query: 67 YSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGD 126
Y+G PP + P G YP +VTS D R+V VVQA A+ +YLG + ++++++GN++S G+
Sbjct: 247 YTGNPPS-KEVPAGKYPFIVTSD-DGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGN 304
Query: 127 PILLDKHIQE 136
PILLD I E
Sbjct: 305 PILLDSSIPE 314
>pdb|4H1Y|P Chain P, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Psb11552
Length = 546
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 91/130 (70%), Gaps = 3/130 (2%)
Query: 7 NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFL 66
NL DEIT++ E D+L + V+ +IAL H+G ++D+ +A+ + V +VVGGHS+TFL
Sbjct: 187 NLVFEDEITALQPEVDKL-KTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFL 245
Query: 67 YSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGD 126
Y+G PP + P G YP +VTS D R+V VVQA A+ +YLG + ++++++GN++S G+
Sbjct: 246 YTGNPPS-KEVPAGKYPFIVTSD-DGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGN 303
Query: 127 PILLDKHIQE 136
PILLD I E
Sbjct: 304 PILLDSSIPE 313
>pdb|4H2F|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form I (Open)
In Complex With Adenosine
pdb|4H2G|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Adenosine
Length = 546
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 91/130 (70%), Gaps = 3/130 (2%)
Query: 7 NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFL 66
NL DEIT++ E D+L + V+ +IAL H+G ++D+ +A+ + V +VVGGHS+TFL
Sbjct: 187 NLVFEDEITALQPEVDKL-KTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFL 245
Query: 67 YSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGD 126
Y+G PP + P G YP +VTS D R+V VVQA A+ +YLG + ++++++GN++S G+
Sbjct: 246 YTGNPPS-KEVPAGKYPFIVTSD-DGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGN 303
Query: 127 PILLDKHIQE 136
PILLD I E
Sbjct: 304 PILLDSSIPE 313
>pdb|4H2I|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Iii
(Closed) In Complex With Ampcp
Length = 532
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 91/130 (70%), Gaps = 3/130 (2%)
Query: 7 NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFL 66
NL DEIT++ E D+L + V+ +IAL H+G ++D+ +A+ + V +VVGGHS+TFL
Sbjct: 165 NLVFEDEITALQPEVDKL-KTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFL 223
Query: 67 YSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGD 126
Y+G PP + P G YP +VTS D R+V VVQA A+ +YLG + ++++++GN++S G+
Sbjct: 224 YTGNPPS-KEVPAGKYPFIVTSD-DGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGN 281
Query: 127 PILLDKHIQE 136
PILLD I E
Sbjct: 282 PILLDSSIPE 291
>pdb|4H1S|A Chain A, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
pdb|4H1S|B Chain B, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
Length = 530
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 91/130 (70%), Gaps = 3/130 (2%)
Query: 7 NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFL 66
NL DEIT++ E D+L + V+ +IAL H+G ++D+ +A+ + V +VVGGHS+TFL
Sbjct: 165 NLVFEDEITALQPEVDKL-KTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFL 223
Query: 67 YSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGD 126
Y+G PP + P G YP +VTS D R+V VVQA A+ +YLG + ++++++GN++S G+
Sbjct: 224 YTGNPPS-KEVPAGKYPFIVTSD-DGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGN 281
Query: 127 PILLDKHIQE 136
PILL+ I E
Sbjct: 282 PILLNSSIPE 291
>pdb|2Z1A|A Chain A, Crystal Structure Of 5'-Nucleotidase Precursor From
Thermus Thermophilus Hb8
Length = 552
Score = 73.6 bits (179), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Query: 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFLYSGK 70
LD S K L+ + V+ ++ LSH G D +A+ V ++VGGHSHT L G
Sbjct: 189 LDPYESAQKAVYELLAKG-VNKIVVLSHLGYGEDLKLARRLVGVQVIVGGHSHTLL--GS 245
Query: 71 PPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILL 130
P P GPYP VV + + + VLVVQA + + +GL+ + ++ KG +++++G+ +L+
Sbjct: 246 FPHKELSPAGPYPTVVKNP-EGKDVLVVQAWEWGKVVGLLEVTFDAKGELLAYKGEALLM 304
>pdb|3ZTV|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|B Chain B, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
Length = 579
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 22/144 (15%)
Query: 1 NIASTG-NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG 59
N +S G +++ DEI + A+ L ++ ++ +I LSHAG + + +A+ + ++V
Sbjct: 166 NSSSPGKDVKFYDEIATAQIMANAL-KQQGINKIILLSHAGSEKNIEIAQKVNDIDVIVT 224
Query: 60 GHSHTFLY------SGKPPCPHDKP---KGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLI 110
G SH +LY S K P ++ P K P + V V++ AYS +G +
Sbjct: 225 GDSH-YLYGNDELRSLKLPVIYEYPLEFKNP---------NGEPVFVMEGWAYSAVVGDL 274
Query: 111 HLQYNDKGNIVSWRGDP-ILLDKH 133
++++ +G R P +L+ H
Sbjct: 275 GVKFSPEGIASITRKIPHVLMSSH 298
>pdb|3GVE|A Chain A, Crystal Structure Of Calcineurin-Like Phosphoesterase Yfkn
From Bacillus Subtilis
pdb|3GVE|B Chain B, Crystal Structure Of Calcineurin-Like Phosphoesterase Yfkn
From Bacillus Subtilis
Length = 341
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 25/121 (20%)
Query: 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQT----------VAKASKHVS 55
G +++ D + S N+ + + + D++IAL+H G++ +A +K +
Sbjct: 185 GQVQVQDIVESANETIPK-XKAEGADVIIALAHTGIEKQAQSSGAENAVFDLATKTKGID 243
Query: 56 IVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDN---RQVLVVQAAAYSRYLGLIHL 112
++ GH H P Y V +V+ + VV +++ +YLG+I L
Sbjct: 244 AIISGHQHGLF-----------PSAEYAGVAQFNVEKGTINGIPVVXPSSWGKYLGVIDL 292
Query: 113 Q 113
+
Sbjct: 293 K 293
>pdb|2WDC|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Glycerol
pdb|2WDD|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Sulfate
pdb|2WDE|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb In Complex
With Thiosulfate
pdb|2WDF|A Chain A, Termus Thermophilus Sulfate Thiohydrolase Soxb
Length = 562
Score = 33.9 bits (76), Expect = 0.030, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 19 KEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSH 63
+EA R + + V+ LSH G+ LD +A+ + + +++ GH+H
Sbjct: 244 QEAVDKARAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTH 288
>pdb|1OID|A Chain A, 5'-nucleotidase (e. Coli) With An Engineered Disulfide
Bridge (s228c, P513c)
pdb|1OID|B Chain B, 5'-nucleotidase (e. Coli) With An Engineered Disulfide
Bridge (s228c, P513c)
pdb|1OIE|A Chain A, 5'-Nucleotidase (E. Coli) With An Engineered Disulfide
Bridge (S228c, P513c)
Length = 532
Score = 32.3 bits (72), Expect = 0.10, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 38/135 (28%)
Query: 24 LVREDKVDIVIALSHAGV------------DLDQTVAKASKHVSIVVGGHSHTFL----- 66
L + +K DI+IA +H G D++ A + ++++VGGHS +
Sbjct: 178 LQQTEKPDIIIAATHMGHYDNGEHGCNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAE 237
Query: 67 ------YSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQY-NDKGN 119
Y PC D+ G + +VQA + +Y+G ++ N +
Sbjct: 238 NKKQVDYVPGTPCKPDQQNG--------------IWIVQAHEWGKYVGRADFEFRNGEMK 283
Query: 120 IVSWRGDPILLDKHI 134
+V+++ P+ L K +
Sbjct: 284 MVNYQLIPVNLKKKV 298
>pdb|2USH|A Chain A, 5'-Nucleotidase From E. Coli
pdb|2USH|B Chain B, 5'-Nucleotidase From E. Coli
pdb|1USH|A Chain A, 5'-Nucleotidase From E. Coli
Length = 550
Score = 32.3 bits (72), Expect = 0.10, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 38/135 (28%)
Query: 24 LVREDKVDIVIALSHAGV------------DLDQTVAKASKHVSIVVGGHSHTFL----- 66
L + +K DI+IA +H G D++ A + ++++VGGHS +
Sbjct: 203 LQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAE 262
Query: 67 ------YSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQY-NDKGN 119
Y PC D+ G + +VQA + +Y+G ++ N +
Sbjct: 263 NKKQVDYVPGTPCKPDQQNG--------------IWIVQAHEWGKYVGRADFEFRNGEMK 308
Query: 120 IVSWRGDPILLDKHI 134
+V+++ P+ L K +
Sbjct: 309 MVNYQLIPVNLKKKV 323
>pdb|1OI8|A Chain A, 5'-Nucleotidase (E. Coli) With An Engineered Disulfide
Bridge (P90c, L424c)
pdb|1OI8|B Chain B, 5'-Nucleotidase (E. Coli) With An Engineered Disulfide
Bridge (P90c, L424c)
Length = 532
Score = 32.3 bits (72), Expect = 0.11, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 38/135 (28%)
Query: 24 LVREDKVDIVIALSHAGV------------DLDQTVAKASKHVSIVVGGHSHTFL----- 66
L + +K DI+IA +H G D++ A + ++++VGGHS +
Sbjct: 178 LQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAE 237
Query: 67 ------YSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQY-NDKGN 119
Y PC D+ G + +VQA + +Y+G ++ N +
Sbjct: 238 NKKQVDYVPGTPCKPDQQNG--------------IWIVQAHEWGKYVGRADFEFRNGEMK 283
Query: 120 IVSWRGDPILLDKHI 134
+V+++ P+ L K +
Sbjct: 284 MVNYQLIPVNLKKKV 298
>pdb|1HO5|A Chain A, 5'-Nucleotidase (E. Coli) In Complex With Adenosine And
Phosphate
pdb|1HO5|B Chain B, 5'-Nucleotidase (E. Coli) In Complex With Adenosine And
Phosphate
pdb|1HPU|A Chain A, 5'-Nucleotidase (Closed Form), Complex With Ampcp
pdb|1HPU|B Chain B, 5'-Nucleotidase (Closed Form), Complex With Ampcp
pdb|1HPU|C Chain C, 5'-Nucleotidase (Closed Form), Complex With Ampcp
pdb|1HPU|D Chain D, 5'-Nucleotidase (Closed Form), Complex With Ampcp
Length = 525
Score = 32.0 bits (71), Expect = 0.12, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 38/135 (28%)
Query: 24 LVREDKVDIVIALSHAGV------------DLDQTVAKASKHVSIVVGGHSHTFL----- 66
L + +K DI+IA +H G D++ A + ++++VGGHS +
Sbjct: 178 LQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAE 237
Query: 67 ------YSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQY-NDKGN 119
Y PC D+ G + +VQA + +Y+G ++ N +
Sbjct: 238 NKKQVDYVPGTPCKPDQQNG--------------IWIVQAHEWGKYVGRADFEFRNGEMK 283
Query: 120 IVSWRGDPILLDKHI 134
+V+++ P+ L K +
Sbjct: 284 MVNYQLIPVNLKKKV 298
>pdb|1HP1|A Chain A, 5'-Nucleotidase (Open Form) Complex With Atp
Length = 516
Score = 31.2 bits (69), Expect = 0.22, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 38/133 (28%)
Query: 24 LVREDKVDIVIALSHAGV------------DLDQTVAKASKHVSIVVGGHSHTFL----- 66
L + +K DI+IA +H G D++ A + ++++VGGHS +
Sbjct: 178 LQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAE 237
Query: 67 ------YSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQY-NDKGN 119
Y PC D+ G + +VQA + +Y+G ++ N +
Sbjct: 238 NKKQVDYVPGTPCKPDQQNG--------------IWIVQAHEWGKYVGRADFEFRNGEMK 283
Query: 120 IVSWRGDPILLDK 132
+V+++ P+ L K
Sbjct: 284 MVNYQLIPVNLKK 296
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 1 NIASTGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ----TVAKASKHV-- 54
N STG L L E+ V KE D+LV VD V A+ A + D+ V +S+
Sbjct: 155 NETSTGVLNPLPELAKVAKEHDKLVF---VDAVSAMGGADIKFDKWGLDVVFSSSQKAFG 211
Query: 55 ---SIVVGGHSHTFL 66
+ +G S FL
Sbjct: 212 VPPGLAIGAFSERFL 226
>pdb|1QMH|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMH|B Chain B, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
Length = 347
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 112 LQYNDKGNIVSWRGDPIL--LDKHIQEGNIVVL 142
LQ ++GNIV RG+ +L + +H+ E I L
Sbjct: 181 LQLGERGNIVQMRGEVLLAGVPRHVAEREIATL 213
>pdb|3TUT|A Chain A, Crystal Structure Of Rtca.Atp Binary Complex
pdb|3TUX|A Chain A, Crystal Structure Of Rtca.Atp.Mn Ternary Complex
pdb|3TV1|A Chain A, Crystal Structure Of Rtca.Amp Product Complex
pdb|3TV1|B Chain B, Crystal Structure Of Rtca.Amp Product Complex
pdb|3TW3|A Chain A, Crystal Structure Of Rtca.Atp.Co Ternary Complex
Length = 358
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 112 LQYNDKGNIVSWRGDPIL--LDKHIQEGNIVVL 142
LQ ++GNIV RG+ +L + +H+ E I L
Sbjct: 200 LQLGERGNIVQMRGEVLLAGVPRHVAEREIATL 232
>pdb|3KGD|A Chain A, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|B Chain B, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|C Chain C, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|D Chain D, Crystal Structure Of E. Coli Rna 3' Cyclase
Length = 358
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 112 LQYNDKGNIVSWRGDPIL--LDKHIQEGNIVVL 142
LQ ++GNIV RG+ +L + +H+ E I L
Sbjct: 200 LQLGERGNIVQMRGEVLLAGVPRHVAEREIATL 232
>pdb|1QMI|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|B Chain B, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|C Chain C, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|D Chain D, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
Length = 347
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 112 LQYNDKGNIVSWRGDPIL--LDKHIQEGNIVVL 142
LQ ++GNIV RG+ +L + +H+ E I L
Sbjct: 181 LQLGERGNIVQXRGEVLLAGVPRHVAEREIATL 213
>pdb|3IVD|A Chain A, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Uridine
pdb|3IVD|B Chain B, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Uridine
pdb|3IVE|A Chain A, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Cytidine
Length = 509
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 18/68 (26%)
Query: 12 DEITSVNKEADRLVREDKVDIVIALSHAGV--------------DLDQTVAKAS--KHVS 55
DEI + + D L + KVD+ +AL H GV LD+ + AS K +
Sbjct: 170 DEIKWLQRYIDEL--KGKVDLTVALIHEGVPARQSSXGGTDVRRALDKDIQTASQVKGLD 227
Query: 56 IVVGGHSH 63
I++ GH+H
Sbjct: 228 ILITGHAH 235
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
pdb|3RV2|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
Length = 407
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 1 NIASTGNLRILDEITSVNKEA----DRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSI 56
+ +TG + ++ E+T+ KEA +VRE +DI S G D AS V+I
Sbjct: 50 TLVTTGQVHVVGEVTTTAKEAFADITNIVRERILDIGYDSSDKGFD------GASCGVNI 103
Query: 57 VVGGHS 62
+G S
Sbjct: 104 GIGAQS 109
>pdb|2KIG|A Chain A, A Ph Domain Within Ocrl Bridges Clathrin Mediated Membrane
Trafficking To Phosphoinositide Metabolism
Length = 161
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 2 IASTGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGH 61
+A TG+ LD+I ++K D ++ E D + + + V + A+ + G H
Sbjct: 65 MAITGDDVSLDQIVPLSK--DFMLEEVSPDGELYILGSDVTVQLNTAELKLVFQLPFGSH 122
Query: 62 SHTFLYSGKPPCPHDKPKGPYP 83
+ TFL CP P+ P
Sbjct: 123 TRTFLQEVARACPGFDPETRDP 144
>pdb|2Z06|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus
pdb|2Z06|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus
pdb|2Z06|C Chain C, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus
pdb|2Z06|D Chain D, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus
Length = 252
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 10 ILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAK--ASKHVSIVVGGHSH 63
+D + + DRL+ E+K D V+ HA ++ S V+G H+H
Sbjct: 117 FMDPLDDPFRALDRLLEEEKADYVLVEVHAEATSEKMALAHYLDGRASAVLGTHTH 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,538,177
Number of Sequences: 62578
Number of extensions: 177388
Number of successful extensions: 479
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 27
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)