Query psy11241
Match_columns 148
No_of_seqs 173 out of 1045
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 21:45:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07409 MPP_CD73_N CD73 ecto-5 100.0 8E-28 1.7E-32 190.0 16.0 121 6-129 160-280 (281)
2 TIGR01530 nadN NAD pyrophospha 100.0 1.8E-27 3.8E-32 202.9 17.0 120 3-124 156-276 (550)
3 cd08162 MPP_PhoA_N Synechococc 99.9 9.1E-26 2E-30 180.8 14.3 108 15-124 194-303 (313)
4 PRK09558 ushA bifunctional UDP 99.9 2.7E-25 5.9E-30 189.5 14.3 135 7-148 187-354 (551)
5 cd07406 MPP_CG11883_N Drosophi 99.9 5E-25 1.1E-29 172.0 14.6 110 5-137 148-257 (257)
6 PRK09419 bifunctional 2',3'-cy 99.9 1.6E-24 3.4E-29 197.6 14.1 121 6-148 815-945 (1163)
7 TIGR01390 CycNucDiestase 2',3' 99.9 2.3E-24 5E-29 186.1 13.2 134 6-148 173-324 (626)
8 PRK11907 bifunctional 2',3'-cy 99.9 4.7E-24 1E-28 187.5 15.1 135 6-148 287-437 (814)
9 cd07405 MPP_UshA_N Escherichia 99.9 1.3E-23 2.9E-28 166.3 12.8 119 6-132 151-284 (285)
10 PRK09420 cpdB bifunctional 2', 99.9 1.1E-23 2.4E-28 182.5 13.0 133 6-148 196-347 (649)
11 PRK09419 bifunctional 2',3'-cy 99.9 2.7E-23 5.8E-28 189.6 13.4 133 7-148 213-359 (1163)
12 PRK09418 bifunctional 2',3'-cy 99.9 5.6E-23 1.2E-27 180.3 13.0 119 6-147 222-359 (780)
13 COG0737 UshA 5'-nucleotidase/2 99.9 4.3E-23 9.2E-28 174.9 11.2 125 6-148 181-315 (517)
14 cd07411 MPP_SoxB_N Thermus the 99.9 1.9E-22 4.2E-27 157.8 12.9 104 6-130 160-264 (264)
15 cd07412 MPP_YhcR_N Bacillus su 99.9 3.7E-22 8E-27 158.2 12.5 103 6-129 169-287 (288)
16 cd07408 MPP_SA0022_N Staphyloc 99.9 4.2E-22 9.1E-27 155.4 11.3 97 7-124 149-254 (257)
17 cd07410 MPP_CpdB_N Escherichia 99.9 7.3E-22 1.6E-26 155.3 11.3 90 6-117 161-261 (277)
18 cd07407 MPP_YHR202W_N Saccharo 99.8 1.7E-20 3.6E-25 148.5 10.6 94 4-119 161-264 (282)
19 cd00845 MPP_UshA_N_like Escher 99.8 4.1E-18 8.8E-23 131.8 11.9 100 7-128 150-250 (252)
20 KOG4419|consensus 99.5 3.9E-14 8.5E-19 119.6 8.3 142 5-148 202-351 (602)
21 cd07382 MPP_DR1281 Deinococcus 99.4 7.9E-13 1.7E-17 103.4 8.9 86 9-115 122-210 (255)
22 smart00854 PGA_cap Bacterial c 99.2 1.1E-10 2.4E-15 90.2 8.5 59 6-66 149-218 (239)
23 cd07381 MPP_CapA CapA and rela 99.1 3.4E-10 7.5E-15 87.3 7.5 57 8-66 155-220 (239)
24 PF09587 PGA_cap: Bacterial ca 98.6 1.9E-07 4.1E-12 72.6 7.9 54 11-66 167-229 (250)
25 TIGR00282 metallophosphoestera 98.4 1.6E-06 3.5E-11 68.3 7.6 58 8-67 124-183 (266)
26 COG2843 PgsA Putative enzyme o 97.3 0.00072 1.6E-08 55.7 6.8 58 7-66 201-269 (372)
27 COG0622 Predicted phosphoester 96.8 0.0028 6E-08 47.0 5.2 56 31-109 81-143 (172)
28 cd07385 MPP_YkuE_C Bacillus su 96.7 0.0015 3.2E-08 49.2 3.0 44 20-66 124-167 (223)
29 PF00149 Metallophos: Calcineu 96.3 0.008 1.7E-07 41.3 4.7 43 22-65 142-200 (200)
30 PRK09453 phosphodiesterase; Pr 96.0 0.012 2.6E-07 43.3 4.6 49 34-105 100-148 (182)
31 cd07394 MPP_Vps29 Homo sapiens 96.0 0.023 5.1E-07 42.0 6.1 50 32-104 79-135 (178)
32 TIGR00040 yfcE phosphoesterase 96.0 0.021 4.5E-07 41.0 5.6 50 33-105 80-136 (158)
33 cd00841 MPP_YfcE Escherichia c 95.5 0.042 9.1E-07 39.0 5.4 53 31-106 75-133 (155)
34 PF13277 YmdB: YmdB-like prote 95.0 0.076 1.6E-06 41.6 5.9 55 11-67 122-178 (253)
35 cd07402 MPP_GpdQ Enterobacter 94.5 0.22 4.7E-06 37.8 7.3 50 16-66 130-195 (240)
36 PRK09968 serine/threonine-spec 94.3 0.43 9.3E-06 36.3 8.5 15 52-66 178-192 (218)
37 cd00839 MPP_PAPs purple acid p 94.1 0.1 2.2E-06 40.9 4.9 53 12-66 137-206 (294)
38 cd07424 MPP_PrpA_PrpB PrpA and 93.9 0.2 4.3E-06 37.7 6.0 31 53-105 168-198 (207)
39 cd07397 MPP_DevT Myxococcus xa 93.8 0.11 2.4E-06 40.4 4.5 57 11-67 127-210 (238)
40 cd07395 MPP_CSTP1 Homo sapiens 93.6 0.42 9.1E-06 36.9 7.5 53 13-66 149-219 (262)
41 PRK11148 cyclic 3',5'-adenosin 93.5 1.5 3.2E-05 34.4 10.5 51 13-66 143-208 (275)
42 cd07396 MPP_Nbla03831 Homo sap 93.1 0.34 7.5E-06 37.8 6.2 52 13-66 164-229 (267)
43 cd07378 MPP_ACP5 Homo sapiens 93.0 0.68 1.5E-05 35.9 7.9 45 20-66 157-214 (277)
44 cd07403 MPP_TTHA0053 Thermus t 92.5 0.32 7E-06 33.9 4.9 38 29-67 54-105 (129)
45 PF12850 Metallophos_2: Calcin 92.3 0.46 1E-05 33.2 5.5 54 31-107 81-141 (156)
46 cd07393 MPP_DR1119 Deinococcus 92.1 0.54 1.2E-05 36.0 6.1 34 32-66 166-206 (232)
47 COG1692 Calcineurin-like phosp 91.9 0.52 1.1E-05 37.0 5.8 57 9-67 124-182 (266)
48 cd07401 MPP_TMEM62_N Homo sapi 91.9 0.58 1.3E-05 36.4 6.2 47 20-67 155-212 (256)
49 cd00840 MPP_Mre11_N Mre11 nucl 91.7 0.33 7.2E-06 36.1 4.5 38 29-66 155-202 (223)
50 TIGR03729 acc_ester putative p 91.3 1.4 3E-05 33.7 7.6 19 47-66 204-222 (239)
51 PRK11340 phosphodiesterase Yae 91.1 0.22 4.9E-06 39.1 3.1 33 30-65 182-214 (271)
52 cd07392 MPP_PAE1087 Pyrobaculu 90.8 0.42 9E-06 34.5 4.1 37 29-66 122-174 (188)
53 cd07388 MPP_Tt1561 Thermus the 90.1 1.7 3.6E-05 33.5 7.1 68 19-112 137-216 (224)
54 cd07399 MPP_YvnB Bacillus subt 89.6 7.3 0.00016 29.3 11.0 22 46-67 142-163 (214)
55 cd07379 MPP_239FB Homo sapiens 89.2 0.64 1.4E-05 32.3 3.9 14 53-66 104-117 (135)
56 PLN02533 probable purple acid 88.9 0.94 2E-05 38.1 5.3 53 12-66 266-335 (427)
57 TIGR00282 metallophosphoestera 88.7 0.96 2.1E-05 35.8 4.9 52 14-66 15-71 (266)
58 cd00842 MPP_ASMase acid sphing 88.5 0.94 2E-05 35.7 4.8 53 13-67 198-263 (296)
59 COG1408 Predicted phosphohydro 88.3 0.3 6.6E-06 38.9 1.9 33 31-66 193-225 (284)
60 cd07400 MPP_YydB Bacillus subt 87.5 1.2 2.7E-05 30.9 4.4 52 14-67 54-127 (144)
61 cd07398 MPP_YbbF-LpxH Escheric 86.7 0.95 2.1E-05 33.6 3.7 15 52-66 188-202 (217)
62 KOG3325|consensus 86.5 1.4 3.1E-05 32.2 4.2 20 47-67 102-121 (183)
63 cd00838 MPP_superfamily metall 85.8 0.58 1.2E-05 30.9 1.9 44 23-67 53-117 (131)
64 PTZ00422 glideosome-associated 85.5 1.7 3.6E-05 36.4 4.8 37 29-66 212-261 (394)
65 COG0621 MiaB 2-methylthioadeni 84.3 2.6 5.7E-05 35.7 5.5 53 13-66 55-107 (437)
66 cd08164 MPP_Ted1 Saccharomyces 83.9 2.9 6.2E-05 31.6 5.1 29 34-66 129-157 (193)
67 PRK14327 (dimethylallyl)adenos 83.9 1.9 4.2E-05 37.2 4.7 43 22-65 130-175 (509)
68 PF13277 YmdB: YmdB-like prote 83.5 2 4.3E-05 33.8 4.2 53 13-66 11-68 (253)
69 PF00919 UPF0004: Uncharacteri 83.3 3.5 7.6E-05 27.5 4.9 44 16-59 54-98 (98)
70 cd07423 MPP_PrpE Bacillus subt 81.8 6.3 0.00014 30.1 6.4 48 52-124 180-228 (234)
71 PF13704 Glyco_tranf_2_4: Glyc 81.0 7.7 0.00017 24.9 5.8 47 12-59 2-48 (97)
72 cd07382 MPP_DR1281 Deinococcus 78.7 5.8 0.00012 31.2 5.3 52 13-66 13-70 (255)
73 cd07390 MPP_AQ1575 Aquifex aeo 78.4 1.8 3.9E-05 31.3 2.3 32 32-67 108-139 (168)
74 TIGR01854 lipid_A_lpxH UDP-2,3 76.7 7.1 0.00015 29.7 5.3 15 52-66 184-198 (231)
75 TIGR01579 MiaB-like-C MiaB-lik 75.7 7.3 0.00016 32.4 5.5 46 16-63 51-97 (414)
76 cd07384 MPP_Cdc1_like Saccharo 75.2 3.2 6.9E-05 30.3 2.9 29 34-66 119-147 (171)
77 cd02067 B12-binding B12 bindin 73.4 12 0.00026 25.1 5.3 47 15-62 37-90 (119)
78 PF14582 Metallophos_3: Metall 72.7 7.9 0.00017 30.3 4.5 62 21-105 165-237 (255)
79 cd07404 MPP_MS158 Microscilla 72.3 5.6 0.00012 28.3 3.6 15 52-66 136-150 (166)
80 KOG2679|consensus 71.3 10 0.00022 30.5 4.9 44 22-66 201-256 (336)
81 TIGR03768 RPA4764 metallophosp 69.0 14 0.00029 31.9 5.5 61 47-120 393-456 (492)
82 PRK11439 pphA serine/threonine 68.7 9 0.0002 29.0 4.1 14 53-66 179-192 (218)
83 cd02071 MM_CoA_mut_B12_BD meth 68.5 21 0.00046 24.3 5.7 18 19-37 41-58 (122)
84 TIGR03884 sel_bind_Methan sele 68.3 12 0.00025 23.9 3.9 27 11-38 25-51 (74)
85 cd07386 MPP_DNA_pol_II_small_a 68.0 6.6 0.00014 30.0 3.3 33 53-107 191-223 (243)
86 PRK14331 (dimethylallyl)adenos 66.6 13 0.00028 31.2 5.1 40 22-62 64-104 (437)
87 TIGR03767 P_acnes_RR metalloph 66.3 19 0.00041 31.2 5.9 61 46-120 373-437 (496)
88 PF02310 B12-binding: B12 bind 65.6 20 0.00043 23.8 5.0 58 7-65 30-93 (121)
89 PF02310 B12-binding: B12 bind 65.3 11 0.00023 25.2 3.6 50 11-61 62-112 (121)
90 COG2129 Predicted phosphoester 65.1 17 0.00037 28.2 4.9 26 56-102 178-203 (226)
91 cd07383 MPP_Dcr2 Saccharomyces 64.1 5.8 0.00013 29.3 2.3 17 50-66 161-177 (199)
92 PRK14328 (dimethylallyl)adenos 64.0 20 0.00044 30.1 5.7 42 21-63 64-108 (439)
93 TIGR01574 miaB-methiolase tRNA 63.7 21 0.00046 30.0 5.8 41 22-63 64-105 (438)
94 COG0541 Ffh Signal recognition 63.6 9 0.0002 32.6 3.5 40 11-51 165-204 (451)
95 PRK14340 (dimethylallyl)adenos 62.1 22 0.00049 30.0 5.7 47 16-63 61-111 (445)
96 KOG0780|consensus 62.0 9.8 0.00021 32.2 3.3 40 9-49 164-203 (483)
97 COG1768 Predicted phosphohydro 61.8 14 0.0003 28.0 3.8 49 15-66 144-200 (230)
98 PRK05340 UDP-2,3-diacylglucosa 61.5 69 0.0015 24.4 7.9 20 46-66 181-200 (241)
99 cd08166 MPP_Cdc1_like_1 unchar 60.5 10 0.00023 28.6 3.1 43 18-66 101-148 (195)
100 PF05152 DUF705: Protein of un 59.8 42 0.00092 27.0 6.4 58 6-67 138-198 (297)
101 PRK11070 ssDNA exonuclease Rec 59.6 25 0.00054 31.0 5.6 40 19-61 118-159 (575)
102 PF02608 Bmp: Basic membrane p 59.5 23 0.0005 28.1 5.1 45 15-60 48-92 (306)
103 PF07302 AroM: AroM protein; 59.2 25 0.00055 27.1 5.0 44 14-59 164-208 (221)
104 cd06353 PBP1_BmpA_Med_like Per 58.9 23 0.00049 27.4 4.8 44 15-59 44-87 (258)
105 TIGR00089 RNA modification enz 58.6 34 0.00073 28.6 6.1 47 14-62 52-101 (429)
106 PRK14337 (dimethylallyl)adenos 58.5 28 0.00061 29.4 5.6 40 24-64 68-108 (446)
107 COG2236 Predicted phosphoribos 58.1 22 0.00047 26.9 4.4 44 8-51 7-51 (192)
108 PRK14325 (dimethylallyl)adenos 57.0 29 0.00063 29.2 5.5 41 21-62 66-107 (444)
109 COG1922 WecG Teichoic acid bio 56.6 28 0.00061 27.4 4.9 48 12-60 116-168 (253)
110 PRK14336 (dimethylallyl)adenos 56.0 29 0.00063 29.0 5.3 41 21-62 64-105 (418)
111 PRK14333 (dimethylallyl)adenos 55.9 34 0.00074 28.8 5.7 34 29-62 76-110 (448)
112 PF04392 ABC_sub_bind: ABC tra 54.3 37 0.0008 26.6 5.4 44 14-61 45-89 (294)
113 TIGR00088 trmD tRNA (guanine-N 54.3 38 0.00083 26.4 5.2 45 15-62 65-112 (233)
114 KOG0541|consensus 53.7 32 0.00068 25.4 4.4 34 17-51 67-100 (171)
115 cd01715 ETF_alpha The electron 53.3 39 0.00085 24.2 5.0 43 21-64 44-94 (168)
116 PF03808 Glyco_tran_WecB: Glyc 53.1 39 0.00085 24.5 5.1 48 12-60 56-108 (172)
117 PF02811 PHP: PHP domain; Int 52.6 17 0.00037 25.5 3.0 46 12-59 13-61 (175)
118 PRK14326 (dimethylallyl)adenos 51.8 41 0.00088 29.0 5.6 43 20-63 75-118 (502)
119 PRK00026 trmD tRNA (guanine-N( 51.5 51 0.0011 25.9 5.6 32 30-62 81-115 (244)
120 PRK14339 (dimethylallyl)adenos 51.5 42 0.00092 28.1 5.6 47 15-62 44-92 (420)
121 KOG1378|consensus 51.5 23 0.00049 30.3 3.9 55 11-66 274-345 (452)
122 cd00544 CobU Adenosylcobinamid 51.5 48 0.001 24.1 5.3 45 15-60 103-164 (169)
123 COG0126 Pgk 3-phosphoglycerate 50.7 19 0.00041 30.2 3.3 28 14-43 38-65 (395)
124 cd08163 MPP_Cdc1 Saccharomyces 49.7 16 0.00035 28.5 2.7 20 46-66 210-229 (257)
125 PRK02261 methylaspartate mutas 49.6 67 0.0015 22.6 5.6 45 16-61 42-93 (137)
126 COG1731 Archaeal riboflavin sy 48.5 24 0.00053 25.2 3.1 23 21-43 48-70 (154)
127 KOG0092|consensus 47.7 23 0.00049 26.9 3.0 30 12-41 91-120 (200)
128 cd02067 B12-binding B12 bindin 47.5 59 0.0013 21.7 4.9 46 12-59 62-108 (119)
129 PRK14335 (dimethylallyl)adenos 47.2 59 0.0013 27.5 5.8 37 30-66 70-107 (455)
130 PRK13625 bis(5'-nucleosyl)-tet 46.3 1.3E+02 0.0029 23.0 7.4 50 52-126 183-233 (245)
131 cd01714 ETF_beta The electron 45.9 73 0.0016 23.8 5.7 45 18-64 66-119 (202)
132 KOG0781|consensus 45.4 48 0.001 28.9 4.9 47 11-58 449-501 (587)
133 TIGR00640 acid_CoA_mut_C methy 45.2 78 0.0017 22.1 5.4 25 15-40 40-64 (132)
134 cd02068 radical_SAM_B12_BD B12 45.1 75 0.0016 21.5 5.2 50 17-66 27-81 (127)
135 PRK12342 hypothetical protein; 44.8 75 0.0016 24.9 5.7 41 22-63 71-119 (254)
136 PRK09177 xanthine-guanine phos 44.8 51 0.0011 23.7 4.5 43 9-51 11-53 (156)
137 COG2908 Uncharacterized protei 44.7 26 0.00057 27.3 3.1 16 52-67 186-201 (237)
138 COG2217 ZntA Cation transport 44.5 35 0.00076 30.9 4.2 50 8-60 532-582 (713)
139 cd02072 Glm_B12_BD B12 binding 44.5 83 0.0018 22.1 5.3 45 16-61 38-89 (128)
140 PRK01037 trmD tRNA (guanine-N( 44.4 60 0.0013 26.9 5.2 44 16-62 65-111 (357)
141 TIGR03471 HpnJ hopanoid biosyn 44.3 54 0.0012 27.7 5.2 44 16-61 83-128 (472)
142 COG0336 TrmD tRNA-(guanine-N1) 43.9 71 0.0015 24.9 5.3 44 17-62 67-113 (240)
143 COG1409 Icc Predicted phosphoh 43.7 87 0.0019 23.7 5.9 12 54-65 182-193 (301)
144 PF07302 AroM: AroM protein; 43.5 33 0.00072 26.5 3.4 28 14-42 73-100 (221)
145 COG1926 Predicted phosphoribos 43.3 87 0.0019 24.2 5.6 52 8-59 2-56 (220)
146 TIGR01125 MiaB-like tRNA modif 43.1 55 0.0012 27.4 5.0 42 17-60 55-96 (430)
147 PRK14191 bifunctional 5,10-met 42.9 32 0.00069 27.6 3.4 36 19-60 172-207 (285)
148 smart00481 POLIIIAc DNA polyme 42.7 73 0.0016 18.9 5.0 46 12-59 12-60 (67)
149 PRK14599 trmD tRNA (guanine-N( 42.5 62 0.0013 25.0 4.7 41 19-62 69-113 (222)
150 PRK04036 DNA polymerase II sma 42.1 26 0.00056 30.2 2.9 30 54-105 441-470 (504)
151 PRK03692 putative UDP-N-acetyl 41.6 54 0.0012 25.5 4.4 45 14-60 115-164 (243)
152 PRK14338 (dimethylallyl)adenos 41.0 70 0.0015 27.1 5.4 45 21-66 83-129 (459)
153 PRK05800 cobU adenosylcobinami 41.0 88 0.0019 22.7 5.3 45 15-60 103-164 (170)
154 TIGR02026 BchE magnesium-proto 40.5 68 0.0015 27.5 5.2 53 8-61 40-100 (497)
155 PRK14176 bifunctional 5,10-met 40.3 36 0.00078 27.3 3.3 64 22-112 182-250 (287)
156 KOG2653|consensus 40.2 61 0.0013 27.3 4.6 45 16-63 60-108 (487)
157 cd08165 MPP_MPPE1 human MPPE1 40.2 28 0.00061 24.8 2.5 13 54-66 123-135 (156)
158 PF04471 Mrr_cat: Restriction 40.2 73 0.0016 20.5 4.4 41 14-55 63-104 (115)
159 PRK14329 (dimethylallyl)adenos 40.1 79 0.0017 26.9 5.5 49 16-65 78-130 (467)
160 PF01012 ETF: Electron transfe 39.2 47 0.001 23.6 3.6 41 23-64 53-101 (164)
161 PF02283 CobU: Cobinamide kina 38.9 69 0.0015 23.3 4.4 46 14-60 100-162 (167)
162 COG3290 CitA Signal transducti 38.9 75 0.0016 27.8 5.2 88 10-115 68-161 (537)
163 COG1979 Uncharacterized oxidor 38.7 44 0.00096 27.7 3.6 55 7-62 64-123 (384)
164 PHA02546 47 endonuclease subun 38.0 43 0.00094 27.1 3.5 48 16-66 135-192 (340)
165 TIGR00708 cobA cob(I)alamin ad 37.8 72 0.0016 23.6 4.4 34 29-62 97-139 (173)
166 PF00162 PGK: Phosphoglycerate 37.4 33 0.00072 28.7 2.8 28 14-43 33-60 (384)
167 PRK15138 aldehyde reductase; P 37.3 41 0.00089 27.8 3.3 37 11-48 68-105 (387)
168 COG0362 Gnd 6-phosphogluconate 37.3 69 0.0015 27.3 4.6 48 13-63 54-105 (473)
169 cd01985 ETF The electron trans 37.1 1.3E+02 0.0029 21.6 5.8 42 22-64 53-102 (181)
170 cd01987 USP_OKCHK USP domain i 37.1 1.2E+02 0.0026 19.8 5.3 12 52-63 84-95 (124)
171 TIGR01918 various_sel_PB selen 36.8 44 0.00095 28.4 3.4 29 13-42 321-349 (431)
172 PF03740 PdxJ: Pyridoxal phosp 36.4 1.2E+02 0.0025 23.8 5.5 52 2-57 98-149 (239)
173 PF12000 Glyco_trans_4_3: Gkyc 36.0 88 0.0019 23.0 4.6 41 15-58 51-93 (171)
174 cd06533 Glyco_transf_WecG_TagA 36.0 98 0.0021 22.4 4.9 48 12-60 54-106 (171)
175 PRK14183 bifunctional 5,10-met 35.9 30 0.00064 27.7 2.2 18 94-111 222-243 (281)
176 PRK10792 bifunctional 5,10-met 35.9 35 0.00075 27.4 2.6 34 21-60 176-209 (285)
177 PRK07414 cob(I)yrinic acid a,c 35.7 82 0.0018 23.4 4.4 34 29-62 115-157 (178)
178 cd07949 PCA_45_Doxase_B_like_1 35.5 48 0.001 26.3 3.3 24 14-38 34-59 (276)
179 cd00318 Phosphoglycerate_kinas 35.3 53 0.0011 27.6 3.7 27 14-42 32-58 (397)
180 cd08190 HOT Hydroxyacid-oxoaci 35.0 44 0.00096 27.9 3.2 29 11-40 63-91 (414)
181 PF13103 TonB_2: TonB C termin 34.7 56 0.0012 20.3 3.0 40 103-144 23-62 (85)
182 cd08181 PPD-like 1,3-propanedi 34.7 44 0.00096 27.2 3.1 29 11-40 66-94 (357)
183 PRK14332 (dimethylallyl)adenos 34.5 99 0.0021 26.2 5.3 41 21-63 73-115 (449)
184 PF08821 CGGC: CGGC domain; I 34.5 1E+02 0.0022 20.9 4.4 46 14-61 51-107 (107)
185 TIGR01917 gly_red_sel_B glycin 34.1 47 0.001 28.2 3.1 30 12-42 320-349 (431)
186 cd00561 CobA_CobO_BtuR ATP:cor 34.0 1.3E+02 0.0028 21.9 5.1 35 28-62 94-137 (159)
187 PRK05986 cob(I)alamin adenolsy 33.9 86 0.0019 23.6 4.3 34 29-62 115-157 (191)
188 PRK05265 pyridoxine 5'-phospha 33.9 1.2E+02 0.0026 23.7 5.2 52 2-57 100-151 (239)
189 COG1454 EutG Alcohol dehydroge 33.8 48 0.001 27.7 3.2 29 11-40 69-97 (377)
190 PF02502 LacAB_rpiB: Ribose/Ga 33.7 1.4E+02 0.0031 21.1 5.3 46 12-59 40-85 (140)
191 cd02065 B12-binding_like B12 b 33.1 1.3E+02 0.0028 19.8 4.9 45 16-61 38-88 (125)
192 cd07368 PhnC_Bs_like PhnC is a 33.1 60 0.0013 25.6 3.5 24 13-37 31-54 (277)
193 cd01782 AF6_RA_repeat1 Ubiquit 32.8 1.3E+02 0.0029 20.7 4.6 50 97-148 11-60 (112)
194 PRK09860 putative alcohol dehy 32.7 53 0.0011 27.1 3.3 35 12-47 72-107 (383)
195 cd07391 MPP_PF1019 Pyrococcus 32.6 38 0.00083 24.3 2.2 14 53-66 122-135 (172)
196 PRK06843 inosine 5-monophospha 32.5 1.4E+02 0.0031 25.1 5.8 20 17-37 154-173 (404)
197 PTZ00005 phosphoglycerate kina 32.5 68 0.0015 27.2 3.9 28 14-42 41-68 (417)
198 cd07950 Gallate_Doxase_N The N 32.4 61 0.0013 25.7 3.5 25 12-37 32-56 (277)
199 PRK15454 ethanol dehydrogenase 32.3 53 0.0011 27.3 3.2 28 12-40 90-117 (395)
200 COG5561 Predicted metal-bindin 32.2 98 0.0021 20.6 3.8 46 17-62 44-99 (101)
201 cd08170 GlyDH Glycerol dehydro 32.1 1.2E+02 0.0026 24.5 5.2 28 12-40 61-88 (351)
202 PF02887 PK_C: Pyruvate kinase 32.1 1.6E+02 0.0034 19.7 5.1 34 29-63 16-49 (117)
203 KOG2310|consensus 32.0 30 0.00064 30.5 1.7 42 54-113 239-291 (646)
204 TIGR00696 wecB_tagA_cpsF bacte 31.9 1.2E+02 0.0026 22.3 4.8 46 14-60 58-107 (177)
205 PRK13365 protocatechuate 4,5-d 31.8 63 0.0014 25.7 3.5 26 12-38 32-58 (279)
206 COG2237 Predicted membrane pro 31.8 51 0.0011 27.4 2.9 47 3-51 40-90 (364)
207 PRK03359 putative electron tra 31.8 1.4E+02 0.0031 23.4 5.4 42 21-63 73-122 (256)
208 cd08173 Gro1PDH Sn-glycerol-1- 31.2 1.2E+02 0.0027 24.3 5.2 25 13-38 63-87 (339)
209 COG1692 Calcineurin-like phosp 31.0 1E+02 0.0022 24.5 4.3 53 12-65 13-70 (266)
210 PRK14171 bifunctional 5,10-met 30.8 35 0.00076 27.4 1.9 17 47-63 196-214 (288)
211 PF07504 FTP: Fungalysin/Therm 30.6 65 0.0014 18.3 2.6 19 109-127 32-50 (51)
212 PF06506 PrpR_N: Propionate ca 30.3 87 0.0019 22.7 3.8 49 9-62 84-134 (176)
213 PF01764 Lipase_3: Lipase (cla 30.2 35 0.00076 23.1 1.6 17 47-63 57-73 (140)
214 PRK00843 egsA NAD(P)-dependent 30.2 1.3E+02 0.0028 24.4 5.1 24 14-38 73-96 (350)
215 TIGR01091 upp uracil phosphori 30.1 1.8E+02 0.0039 21.8 5.6 45 15-60 136-181 (207)
216 PRK14178 bifunctional 5,10-met 30.1 74 0.0016 25.4 3.6 36 20-61 168-203 (279)
217 PRK10200 putative racemase; Pr 29.9 71 0.0015 24.4 3.4 39 11-50 58-96 (230)
218 TIGR00583 mre11 DNA repair pro 29.9 52 0.0011 27.6 2.8 35 32-66 202-241 (405)
219 cd08551 Fe-ADH iron-containing 29.7 61 0.0013 26.4 3.2 28 12-40 64-91 (370)
220 PRK15118 universal stress glob 29.6 66 0.0014 21.9 3.0 23 40-63 91-113 (144)
221 COG4186 Predicted phosphoester 29.6 95 0.0021 23.0 3.8 36 32-67 109-150 (186)
222 cd08185 Fe-ADH1 Iron-containin 29.6 63 0.0014 26.5 3.2 28 12-40 67-94 (380)
223 KOG0807|consensus 29.0 1.3E+02 0.0029 23.9 4.7 50 14-65 33-102 (295)
224 TIGR01497 kdpB K+-transporting 28.9 1.6E+02 0.0035 26.6 5.8 50 8-60 441-491 (675)
225 PF04123 DUF373: Domain of unk 28.8 62 0.0013 26.7 3.0 47 3-51 40-90 (344)
226 PF01522 Polysacc_deac_1: Poly 28.7 1.2E+02 0.0026 19.8 4.0 59 7-66 9-70 (123)
227 PRK01122 potassium-transportin 28.4 1.4E+02 0.003 27.0 5.4 49 8-59 440-489 (679)
228 PRK00073 pgk phosphoglycerate 28.3 74 0.0016 26.7 3.4 27 14-42 35-61 (389)
229 PF00465 Fe-ADH: Iron-containi 28.2 55 0.0012 26.6 2.7 29 11-40 61-89 (366)
230 PF01070 FMN_dh: FMN-dependent 28.0 1.1E+02 0.0024 25.1 4.4 40 21-61 239-288 (356)
231 PRK14010 potassium-transportin 27.8 1.4E+02 0.0031 26.9 5.3 49 8-59 436-485 (673)
232 PRK09423 gldA glycerol dehydro 27.8 1.4E+02 0.003 24.3 5.0 27 12-39 68-94 (366)
233 PF03544 TonB_C: Gram-negative 27.6 1.4E+02 0.0031 17.9 4.0 36 110-147 20-55 (79)
234 TIGR01352 tonB_Cterm TonB fami 27.6 1.4E+02 0.003 17.6 4.7 37 109-147 13-49 (74)
235 cd07948 DRE_TIM_HCS Saccharomy 27.6 91 0.002 24.4 3.7 55 11-66 137-195 (262)
236 TIGR03599 YloV DAK2 domain fus 27.4 2.5E+02 0.0053 24.6 6.6 53 11-64 463-523 (530)
237 TIGR02888 spore_YlmC_YmxH spor 27.4 91 0.002 19.8 3.0 20 103-122 15-38 (76)
238 TIGR00177 molyb_syn molybdenum 27.3 2E+02 0.0043 20.1 5.1 25 15-41 54-78 (144)
239 TIGR02638 lactal_redase lactal 27.2 75 0.0016 26.1 3.3 28 12-40 70-97 (379)
240 COG1311 HYS2 Archaeal DNA poly 27.0 47 0.001 28.6 2.1 14 54-67 419-432 (481)
241 cd07766 DHQ_Fe-ADH Dehydroquin 26.9 1.6E+02 0.0035 23.4 5.1 28 12-40 62-89 (332)
242 PRK10624 L-1,2-propanediol oxi 26.4 76 0.0016 26.1 3.2 28 12-40 71-98 (382)
243 cd07396 MPP_Nbla03831 Homo sap 26.4 1.2E+02 0.0026 23.4 4.1 30 9-39 21-50 (267)
244 PRK01119 hypothetical protein; 26.4 1.1E+02 0.0023 20.8 3.4 21 16-37 61-81 (106)
245 PF11720 Inhibitor_I78: Peptid 26.3 78 0.0017 18.9 2.5 17 108-124 42-58 (60)
246 cd08189 Fe-ADH5 Iron-containin 26.3 79 0.0017 25.9 3.3 28 12-40 67-94 (374)
247 cd02070 corrinoid_protein_B12- 26.3 2.1E+02 0.0046 21.2 5.4 45 16-61 121-173 (201)
248 PRK00967 hypothetical protein; 26.2 1.1E+02 0.0025 20.5 3.5 22 16-38 61-82 (105)
249 PF02572 CobA_CobO_BtuR: ATP:c 26.1 1E+02 0.0023 22.7 3.6 48 15-62 79-138 (172)
250 TIGR00619 sbcd exonuclease Sbc 26.1 73 0.0016 24.6 2.9 49 17-65 161-225 (253)
251 cd08187 BDH Butanol dehydrogen 26.1 81 0.0017 25.9 3.3 27 13-40 71-97 (382)
252 cd07387 MPP_PolD2_C PolD2 (DNA 26.0 2E+02 0.0042 22.7 5.3 36 54-106 204-239 (257)
253 PF09370 TIM-br_sig_trns: TIM- 26.0 1.5E+02 0.0033 23.6 4.6 58 8-67 192-253 (268)
254 PRK00129 upp uracil phosphorib 25.7 2.4E+02 0.0052 21.1 5.6 45 15-60 138-183 (209)
255 PF11197 DUF2835: Protein of u 25.7 1.1E+02 0.0023 19.1 3.0 25 96-124 43-67 (68)
256 PRK10481 hypothetical protein; 25.6 1.2E+02 0.0026 23.4 3.9 28 14-42 76-103 (224)
257 PF00478 IMPDH: IMP dehydrogen 25.4 2.1E+02 0.0046 23.7 5.5 41 19-60 111-156 (352)
258 PRK09417 mogA molybdenum cofac 25.4 1E+02 0.0022 23.1 3.5 32 11-42 48-79 (193)
259 cd08180 PDD 1,3-propanediol de 25.4 91 0.002 25.0 3.4 27 13-40 63-89 (332)
260 cd08182 HEPD Hydroxyethylphosp 25.3 83 0.0018 25.6 3.2 27 12-39 61-87 (367)
261 PLN02274 inosine-5'-monophosph 25.3 2E+02 0.0043 25.0 5.6 23 18-41 250-272 (505)
262 COG0552 FtsY Signal recognitio 25.3 86 0.0019 25.9 3.2 39 11-50 204-242 (340)
263 cd08183 Fe-ADH2 Iron-containin 25.2 90 0.002 25.6 3.4 28 12-40 59-86 (374)
264 PLN03034 phosphoglycerate kina 25.1 96 0.0021 26.8 3.6 27 14-42 117-143 (481)
265 cd08193 HVD 5-hydroxyvalerate 25.0 86 0.0019 25.7 3.3 28 12-40 67-94 (376)
266 COG0718 Uncharacterized protei 25.0 1.2E+02 0.0026 20.6 3.4 31 109-142 41-71 (105)
267 PRK14189 bifunctional 5,10-met 24.9 65 0.0014 25.8 2.4 19 94-112 223-245 (285)
268 PRK12855 hypothetical protein; 24.7 1.2E+02 0.0026 20.5 3.4 22 16-38 61-82 (103)
269 cd08186 Fe-ADH8 Iron-containin 24.7 85 0.0019 25.8 3.2 27 13-40 69-95 (383)
270 PRK02877 hypothetical protein; 24.7 1.3E+02 0.0027 20.4 3.5 18 19-37 64-81 (106)
271 PF14681 UPRTase: Uracil phosp 24.6 1.5E+02 0.0033 22.2 4.4 45 15-60 135-182 (207)
272 cd08179 NADPH_BDH NADPH-depend 24.5 89 0.0019 25.6 3.3 36 12-48 65-101 (375)
273 COG3287 Uncharacterized conser 24.4 1.7E+02 0.0036 24.6 4.8 48 11-60 13-64 (379)
274 PF04205 FMN_bind: FMN-binding 24.3 1.3E+02 0.0027 18.5 3.3 18 109-126 7-24 (81)
275 cd08176 LPO Lactadehyde:propan 24.3 92 0.002 25.5 3.3 27 12-39 69-95 (377)
276 PF14597 Lactamase_B_5: Metall 24.2 1.3E+02 0.0029 22.7 3.8 46 5-51 31-77 (199)
277 PRK07807 inosine 5-monophospha 24.1 2E+02 0.0044 24.7 5.4 24 17-41 228-251 (479)
278 cd07425 MPP_Shelphs Shewanella 24.1 43 0.00093 25.1 1.2 15 52-66 166-180 (208)
279 PF02900 LigB: Catalytic LigB 24.1 88 0.0019 24.2 3.0 24 13-37 26-49 (272)
280 PF10230 DUF2305: Uncharacteri 24.1 1.9E+02 0.0042 22.4 5.0 12 52-63 82-93 (266)
281 PRK10116 universal stress prot 24.0 95 0.002 20.9 2.9 10 53-62 102-111 (142)
282 TIGR00035 asp_race aspartate r 23.9 1.7E+02 0.0038 22.1 4.6 28 12-40 59-86 (229)
283 cd01988 Na_H_Antiporter_C The 23.9 2.1E+02 0.0046 18.5 5.8 35 29-64 69-105 (132)
284 cd08178 AAD_C C-terminal alcoh 23.9 95 0.0021 25.7 3.3 28 12-40 62-89 (398)
285 cd08192 Fe-ADH7 Iron-containin 23.8 92 0.002 25.4 3.2 27 12-39 65-91 (370)
286 PRK14170 bifunctional 5,10-met 23.8 86 0.0019 25.1 2.9 19 94-112 222-244 (284)
287 cd07940 DRE_TIM_IPMS 2-isoprop 23.5 2.1E+02 0.0046 22.1 5.1 52 14-66 142-200 (268)
288 cd08177 MAR Maleylacetate redu 23.4 96 0.0021 25.0 3.2 28 12-40 61-88 (337)
289 PRK14186 bifunctional 5,10-met 23.4 71 0.0015 25.8 2.4 17 47-63 195-213 (297)
290 TIGR00024 SbcD_rel_arch putati 23.3 57 0.0012 24.9 1.8 15 53-67 134-148 (225)
291 TIGR01425 SRP54_euk signal rec 23.2 1.6E+02 0.0034 25.1 4.5 35 12-47 166-200 (429)
292 cd02069 methionine_synthase_B1 23.2 2.3E+02 0.005 21.4 5.1 44 17-61 128-177 (213)
293 COG1597 LCB5 Sphingosine kinas 23.1 2.3E+02 0.0051 22.5 5.3 42 15-58 20-63 (301)
294 cd07372 2A5CPDO_B The beta sub 23.1 1.1E+02 0.0024 24.4 3.5 24 14-38 36-60 (294)
295 PRK01217 hypothetical protein; 22.9 1.3E+02 0.0029 20.7 3.4 21 16-37 68-88 (114)
296 PRK08091 ribulose-phosphate 3- 22.9 3.6E+02 0.0078 20.8 6.3 8 53-60 200-207 (228)
297 PRK12856 hypothetical protein; 22.9 1.5E+02 0.0032 20.1 3.5 22 16-38 61-82 (103)
298 cd08194 Fe-ADH6 Iron-containin 22.8 95 0.0021 25.4 3.1 28 12-40 64-91 (375)
299 TIGR00262 trpA tryptophan synt 22.8 2.9E+02 0.0063 21.5 5.7 52 7-59 118-171 (256)
300 PLN02293 adenine phosphoribosy 22.7 3.2E+02 0.007 20.2 6.2 52 6-59 30-91 (187)
301 cd02809 alpha_hydroxyacid_oxid 22.6 2E+02 0.0043 22.7 4.9 13 29-41 193-205 (299)
302 PRK09875 putative hydrolase; P 22.6 1.9E+02 0.0042 23.1 4.7 48 12-61 31-82 (292)
303 cd00851 MTH1175 This uncharact 22.5 2.2E+02 0.0047 18.1 4.7 38 18-59 53-90 (103)
304 PF08840 BAAT_C: BAAT / Acyl-C 22.4 1.2E+02 0.0026 22.7 3.4 47 13-59 2-51 (213)
305 PRK12342 hypothetical protein; 22.3 1.2E+02 0.0026 23.8 3.4 28 11-39 92-119 (254)
306 PF00389 2-Hacid_dh: D-isomer 22.3 1.7E+02 0.0036 19.8 3.9 38 20-63 11-48 (133)
307 cd07359 PCA_45_Doxase_B_like S 22.1 1.2E+02 0.0027 23.5 3.5 25 13-38 29-53 (271)
308 PRK14175 bifunctional 5,10-met 22.1 1.6E+02 0.0035 23.6 4.2 37 18-60 172-208 (286)
309 cd08171 GlyDH-like2 Glycerol d 21.9 2E+02 0.0043 23.2 4.8 23 14-37 64-86 (345)
310 PRK14190 bifunctional 5,10-met 21.9 1E+02 0.0022 24.7 3.0 30 29-63 182-213 (284)
311 PRK09982 universal stress prot 21.9 1.7E+02 0.0037 20.0 3.9 16 46-62 97-112 (142)
312 PHA03398 viral phosphatase sup 21.9 4.4E+02 0.0095 21.4 6.6 48 15-64 151-201 (303)
313 TIGR03405 Phn_Fe-ADH phosphona 21.9 1.1E+02 0.0023 25.0 3.2 29 11-40 61-91 (355)
314 COG4026 Uncharacterized protei 21.9 1.2E+02 0.0026 23.7 3.2 43 7-51 36-78 (290)
315 PLN02282 phosphoglycerate kina 21.8 1.2E+02 0.0026 25.6 3.5 27 14-42 42-68 (401)
316 cd08172 GlyDH-like1 Glycerol d 21.7 2.1E+02 0.0045 23.1 4.9 27 12-39 60-86 (347)
317 cd00954 NAL N-Acetylneuraminic 21.6 3E+02 0.0065 21.6 5.7 44 15-59 83-134 (288)
318 PF14360 PAP2_C: PAP2 superfam 21.6 38 0.00083 21.2 0.4 9 55-63 4-12 (74)
319 KOG3361|consensus 21.5 1.5E+02 0.0032 21.2 3.4 41 94-135 54-94 (157)
320 PRK14166 bifunctional 5,10-met 21.4 83 0.0018 25.2 2.4 19 94-112 222-244 (282)
321 TIGR02298 HpaD_Fe 3,4-dihydrox 21.3 1.2E+02 0.0027 23.9 3.4 27 12-39 31-58 (282)
322 cd07362 HPCD_like Class III ex 21.2 1.3E+02 0.0027 23.7 3.4 24 14-38 29-52 (272)
323 PF13684 Dak1_2: Dihydroxyacet 21.1 3.8E+02 0.0083 21.5 6.2 47 11-58 246-298 (313)
324 PRK13938 phosphoheptose isomer 21.1 3.6E+02 0.0078 20.1 5.8 37 29-66 113-154 (196)
325 TIGR01684 viral_ppase viral ph 21.0 3.7E+02 0.0081 21.8 6.0 49 15-65 149-200 (301)
326 cd07367 CarBb CarBb is the B s 21.0 1.4E+02 0.003 23.5 3.5 24 14-38 28-51 (268)
327 PF02608 Bmp: Basic membrane p 20.9 1.9E+02 0.0042 22.8 4.4 51 10-62 171-221 (306)
328 TIGR01501 MthylAspMutase methy 20.9 2.4E+02 0.0051 19.9 4.4 28 14-42 38-65 (134)
329 COG1654 BirA Biotin operon rep 20.7 1E+02 0.0022 19.8 2.3 22 15-37 34-55 (79)
330 PRK14862 rimO ribosomal protei 20.7 2.9E+02 0.0063 23.3 5.7 43 17-62 63-105 (440)
331 PF13477 Glyco_trans_4_2: Glyc 20.7 2.7E+02 0.0058 18.4 5.0 49 17-66 63-112 (139)
332 cd01984 AANH_like Adenine nucl 20.6 2.2E+02 0.0047 17.4 4.7 36 29-65 25-60 (86)
333 cd07366 3MGA_Dioxygenase Subun 20.5 1.2E+02 0.0027 24.7 3.2 23 15-38 73-95 (328)
334 cd03332 LMO_FMN L-Lactate 2-mo 20.5 2.1E+02 0.0046 23.9 4.7 12 29-40 274-285 (383)
335 PF05636 HIGH_NTase1: HIGH Nuc 20.4 1.3E+02 0.0028 25.2 3.4 21 20-40 20-40 (388)
336 PF02558 ApbA: Ketopantoate re 20.4 2.4E+02 0.0053 19.2 4.5 37 17-53 80-116 (151)
337 PRK15005 universal stress prot 20.4 1.3E+02 0.0028 20.2 3.0 8 53-60 107-114 (144)
338 cd04737 LOX_like_FMN L-Lactate 20.4 2.5E+02 0.0054 23.1 5.1 14 29-42 242-255 (351)
339 cd08188 Fe-ADH4 Iron-containin 20.3 1.2E+02 0.0026 24.9 3.2 27 13-40 70-96 (377)
340 PRK00587 hypothetical protein; 20.3 1.3E+02 0.0028 20.1 2.9 31 108-141 35-65 (99)
341 COG0678 AHP1 Peroxiredoxin [Po 20.3 1.3E+02 0.0027 22.1 2.9 33 18-51 62-94 (165)
342 PF00448 SRP54: SRP54-type pro 20.2 2.5E+02 0.0054 20.8 4.7 27 12-39 67-93 (196)
343 cd07373 2A5CPDO_A The alpha su 20.1 1.4E+02 0.003 23.4 3.4 23 14-37 28-50 (271)
344 COG1751 Uncharacterized conser 20.1 1.9E+02 0.0042 21.3 3.8 48 15-64 39-94 (186)
No 1
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=99.96 E-value=8e-28 Score=189.96 Aligned_cols=121 Identities=52% Similarity=0.997 Sum_probs=106.6
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEE
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIV 85 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~ 85 (148)
+++.|.|+++++++++++||++ |||+||+|+|+|.+.+++||+++++||+|||||+|..+..+..| -++..+++||..
T Consensus 160 ~~~~~~d~~~~~~~~v~~lr~~-~~D~II~l~H~G~~~d~~la~~~~giD~IiggH~H~~~~~~~~~-~~~~~~~~~p~~ 237 (281)
T cd07409 160 GKVKFLDEIEAAQKEADKLKAQ-GVNKIIALSHSGYEVDKEIARKVPGVDVIVGGHSHTFLYTGPPP-SGEKPVGPYPTV 237 (281)
T ss_pred CceEECCHHHHHHHHHHHHHhc-CCCEEEEEeccCchhHHHHHHcCCCCcEEEeCCcCccccCCCCC-cCcccCCCCCEE
Confidence 6899999999999999999998 89999999999999999999999999999999999998643322 123456788988
Q ss_pred EecCCCCceEEEEecCccccceeEEEEEEecCCCEEEEeceEEe
Q psy11241 86 VTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPIL 129 (148)
Q Consensus 86 v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g~v~~~~~~~i~ 129 (148)
+.+ ++|++|+++|+|++|++||+++|+|+++|+++.+++++++
T Consensus 238 ~~~-~~~~~~~ivq~g~~g~~~g~i~l~~~~~~~~~~~~~~~~~ 280 (281)
T cd07409 238 VKN-ADGRKVLVVQAYAYGKYLGYLDVTFDDNGNVTSWEGNPIL 280 (281)
T ss_pred eeC-CCCCEEEEEeCChHHheEEEEEEEEcCCCCEEEeeCEEEe
Confidence 855 7888999999999999999999999988999888877664
No 2
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=99.95 E-value=1.8e-27 Score=202.95 Aligned_cols=120 Identities=26% Similarity=0.428 Sum_probs=101.5
Q ss_pred CCCC-CeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCC
Q psy11241 3 ASTG-NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGP 81 (148)
Q Consensus 3 s~~~-~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~ 81 (148)
++|+ +++|.|+++++++++++||++ |||+||+|+|+|++.|.+||+++++||+|||||+|+.+.+...-..+....++
T Consensus 156 ~~~~~~~~f~d~~~~~~~~v~~Lk~~-g~D~II~lsH~g~~~d~~la~~~~~iD~IigGHsH~~~~~~~~~~~~~~~~~~ 234 (550)
T TIGR01530 156 SSPGKDIKFIDEIAAAQIAANALKQQ-GINKIILLSHAGFEKNCEIAQKINDIDVIVSGDSHYLLGDDELGRLGLPVIGE 234 (550)
T ss_pred cCCCCceEECCHHHHHHHHHHHHHhC-CCCEEEEEecCCcHHHHHHHhcCCCCCEEEeCCCCccccCCcccccCCCcCCC
Confidence 3455 899999999999999999988 89999999999999999999999999999999999998532111112345678
Q ss_pred CCEEEecCCCCceEEEEecCccccceeEEEEEEecCCCEEEEe
Q psy11241 82 YPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWR 124 (148)
Q Consensus 82 ~p~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g~v~~~~ 124 (148)
||..+.+ ++|++|+|+|+|+||++||+++|+|+++|.+..++
T Consensus 235 ~p~~~~~-~~g~~~~ivqag~~g~~lg~l~l~~d~~g~~~~~~ 276 (550)
T TIGR01530 235 YPLEFKN-PAGDPVFVMEAWAYGACLGDLGVKFDPEGIASIAR 276 (550)
T ss_pred CCEEeeC-CCCCEEEEEeCChHhheeeeEEEEECCCCCEEEec
Confidence 9988855 77888999999999999999999999888765543
No 3
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=99.94 E-value=9.1e-26 Score=180.80 Aligned_cols=108 Identities=26% Similarity=0.498 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCC-chhhHHHHhhCCCccEEEeCCccceecCCC-CCCCCCCCCCCCCEEEecCCCC
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAG-VDLDQTVAKASKHVSIVVGGHSHTFLYSGK-PPCPHDKPKGPYPIVVTSSVDN 92 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g-~~~d~~la~~~~~iDvIlgGH~H~~~~~~~-~~~~~~~~~~~~p~~v~~~~~g 92 (148)
+++++++++||++ |||+||+|||+| ++.|++||+++++||+|||||+|+.+.... .+..++...++||..+.+ ++|
T Consensus 194 ~~~~~~v~~Lr~~-gvD~II~LsH~g~~~~d~~lA~~v~gIDvIigGHsH~~l~~~~~~~~~~~~~~~~yp~~~~~-~~g 271 (313)
T cd08162 194 EQIQPSIDALTAQ-GINKIILLSHLQQISIEQALAALLSGVDVIIAGGSNTLLADETDRLRPGDTAAGDYPLVTTD-ADG 271 (313)
T ss_pred HHHHHHHHHHHHC-CCCEEEEEecccccchHHHHHhcCCCCCEEEeCCCCccCcCCCccccCCCCcCCCCCEEEeC-CCC
Confidence 4699999999988 899999999995 889999999999999999999999985421 011245567899998876 889
Q ss_pred ceEEEEecCccccceeEEEEEEecCCCEEEEe
Q psy11241 93 RQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWR 124 (148)
Q Consensus 93 ~~~~vvq~g~~g~~lg~l~l~~~~~g~v~~~~ 124 (148)
++|+|+|+|++|+|||+++|+|+++|+++.++
T Consensus 272 ~~~~ivq~g~~~~~vG~l~l~~d~~g~i~~~~ 303 (313)
T cd08162 272 NPVLIVNTDGNYKYVGRLVVDFDANGVIIPIS 303 (313)
T ss_pred CEEEEEEcChhhheeeEEEEEECCCCCEEEcc
Confidence 99999999999999999999999889988764
No 4
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=99.93 E-value=2.7e-25 Score=189.54 Aligned_cols=135 Identities=23% Similarity=0.353 Sum_probs=104.9
Q ss_pred CeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCc----------hhhHHHHhhCC--CccEEEeCCccceecCCCCC-C
Q psy11241 7 NLRILDEITSVNKEADRLVREDKVDIVIALSHAGV----------DLDQTVAKASK--HVSIVVGGHSHTFLYSGKPP-C 73 (148)
Q Consensus 7 ~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~----------~~d~~la~~~~--~iDvIlgGH~H~~~~~~~~~-~ 73 (148)
+++|.|+++++++++++||+++|||+||||+|+|+ +.|.+||++++ +||+|||||+|+.+...... .
T Consensus 187 ~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~~~~~~d~~la~~~~~~~IDvIlgGHsH~~~~~~~~~~~ 266 (551)
T PRK09558 187 DIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHGSNAPGDVEMARSLPAGGLDMIVGGHSQDPVCMAAENKK 266 (551)
T ss_pred CceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccCCCCccHHHHHHhCCccCceEEEeCCCCcccccCCCccc
Confidence 89999999999999999997448999999999998 45678999998 99999999999987521100 0
Q ss_pred -CCCCCCCC-CCEEEecCCCCceEEEEecCccccceeEEEEEEecCCCEEEEeceEEec------------------CCC
Q psy11241 74 -PHDKPKGP-YPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILL------------------DKH 133 (148)
Q Consensus 74 -~~~~~~~~-~p~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g~v~~~~~~~i~~------------------~~~ 133 (148)
.......+ +|..+ | +++|+|+|+||++||+++|+|+ +|++...+++++++ ...
T Consensus 267 ~~~~~~~~~~~~~~~-~-----~~~ivqag~~g~~vg~l~l~~~-~g~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~ 339 (551)
T PRK09558 267 QVDYVPGTPCKPDQQ-N-----GTWIVQAHEWGKYVGRADFEFR-NGELKLVSYQLIPVNLKKKVKWEDGKSERVLYTEE 339 (551)
T ss_pred ccccCCCCCCCCccc-C-----CEEEEecChhhheeEEEEEEEE-CCeEEEEeeeeeecccccccccccccceeeecccc
Confidence 00000011 13333 4 7999999999999999999997 68877777666654 234
Q ss_pred CCCCHHHHHHhHhhC
Q psy11241 134 IQEGNIVVLFAKRFR 148 (148)
Q Consensus 134 ~~~D~~i~~~v~~~~ 148 (148)
+++|+++++++++|+
T Consensus 340 ~~~D~~i~~~v~~~~ 354 (551)
T PRK09558 340 IAEDPQVLELLTPFQ 354 (551)
T ss_pred CCCCHHHHHHHHHHH
Confidence 889999999999884
No 5
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=99.93 E-value=5e-25 Score=172.01 Aligned_cols=110 Identities=23% Similarity=0.411 Sum_probs=101.3
Q ss_pred CCCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCE
Q psy11241 5 TGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPI 84 (148)
Q Consensus 5 ~~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~ 84 (148)
.++++|.|+.++++++++++|++ |+|+||+|+|+|.++++++|+++++||+|||||+|.... .
T Consensus 148 ~~~~~~~d~~~~~~~~v~~~~~~-~~D~iVvl~H~g~~~d~~la~~~~~iD~IlgGH~H~~~~----------------~ 210 (257)
T cd07406 148 PEYVRYRDYVETARELVDELREQ-GADLIIALTHMRLPNDKRLAREVPEIDLILGGHDHEYIL----------------V 210 (257)
T ss_pred CCcceEcCHHHHHHHHHHHHHhC-CCCEEEEEeccCchhhHHHHHhCCCCceEEecccceeEe----------------e
Confidence 45899999999999999999987 899999999999999999999999999999999999873 2
Q ss_pred EEecCCCCceEEEEecCccccceeEEEEEEecCCCEEEEeceEEecCCCCCCC
Q psy11241 85 VVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDKHIQEG 137 (148)
Q Consensus 85 ~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g~v~~~~~~~i~~~~~~~~D 137 (148)
.+ + +++++|+|++|++||+++|+|+.++++..+++++++++..++||
T Consensus 211 ~~-~-----~t~vv~~g~~g~~vg~l~l~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (257)
T cd07406 211 QV-G-----GTPIVKSGSDFRTVYIITLTYDTKTRKVQVNSRLVPITSSIPED 257 (257)
T ss_pred eE-C-----CEEEEeCCcCcceEEEEEEEEECCCCEEEEEEEEEEcccccCCC
Confidence 45 5 79999999999999999999998887777899999999999987
No 6
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=99.92 E-value=1.6e-24 Score=197.59 Aligned_cols=121 Identities=30% Similarity=0.441 Sum_probs=106.6
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhh--------HHHHhhCCCccEEEeCCccceecCCCCCCCCCC
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLD--------QTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDK 77 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d--------~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~ 77 (148)
.+++|.|+++++++++++||+++|||+||+|+|+|.+.| .+||+++++||+|||||+|+.+..
T Consensus 815 ~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~~~~~~~~lA~~v~gIDvIigGHsH~~~~~--------- 885 (1163)
T PRK09419 815 KNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTTGEITGLELAKKVKGVDAIISAHTHTLVDK--------- 885 (1163)
T ss_pred CCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccccccHHHHHHHhCCCCCEEEeCCCCccccc---------
Confidence 389999999999999999996448999999999999988 899999999999999999998842
Q ss_pred CCCCCCEEEecCCCCceEEEEecCccccceeEEEEEEecCCCEEEEece--EEecCCCCCCCHHHHHHhHhhC
Q psy11241 78 PKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGD--PILLDKHIQEGNIVVLFAKRFR 148 (148)
Q Consensus 78 ~~~~~p~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g~v~~~~~~--~i~~~~~~~~D~~i~~~v~~~~ 148 (148)
.+ + +++|+|+|+||++||+++|+|+++|+++..+.. ++.++..+++|+++++++++|+
T Consensus 886 -------~v-~-----~~~ivqag~~g~~vg~i~l~~d~~g~~~~~~~~~~~~~~~~~~~~D~~v~~~v~~~~ 945 (1163)
T PRK09419 886 -------VV-N-----GTPVVQAYKYGRALGRVDVKFDKKGVVVVKTSRIDLSKIDDDLPEDPEMKEILDKYE 945 (1163)
T ss_pred -------cC-C-----CEEEEeCChhHcEEEEEEEEEECCCcEEEEeccceeeecccccCCCHHHHHHHHHHH
Confidence 34 5 799999999999999999999988887766554 4555667999999999999884
No 7
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=99.92 E-value=2.3e-24 Score=186.12 Aligned_cols=134 Identities=21% Similarity=0.232 Sum_probs=101.3
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhh--HHH-------HhhCCCccEEEeCCccceecCCCCCCCCC
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLD--QTV-------AKASKHVSIVVGGHSHTFLYSGKPPCPHD 76 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d--~~l-------a~~~~~iDvIlgGH~H~~~~~~~~~~~~~ 76 (148)
++++|.|+++++++++++||++ |||+||+|+|+|++.| ..+ +++++|||+||+||+|..++++.++..+
T Consensus 173 g~v~~~d~veaa~~~v~~Lr~~-gaDvII~LsH~G~~~d~~~~~~en~~~~l~~v~gID~Il~GHsH~~~~~~~~~~~~- 250 (626)
T TIGR01390 173 GKVTTADIVDTARKYVPEMKAK-GADIIVALAHSGISADPYQPGAENSAYYLTKVPGIDAVLFGHSHAVFPGKDFATIP- 250 (626)
T ss_pred CceEECCHHHHHHHHHHHHHHc-CCCEEEEEeccCcCCCccccccchHHHHHhcCCCCCEEEcCCCCccCcCcccccCC-
Confidence 4699999999999999999998 9999999999999865 222 3678999999999999999653221100
Q ss_pred CCCCCCCEEEecCCCCceEEEEecCccccceeEEEEEEecC-CC--EEEEeceEEecCC------CCCCCHHHHHHhHhh
Q psy11241 77 KPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDK-GN--IVSWRGDPILLDK------HIQEGNIVVLFAKRF 147 (148)
Q Consensus 77 ~~~~~~p~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~-g~--v~~~~~~~i~~~~------~~~~D~~i~~~v~~~ 147 (148)
....++ ...++++++|+|+||++||+++|+|+++ |+ ++..+++.+++.. .+++|+++.+++++|
T Consensus 251 -~~d~~~------~~i~g~~vvqaG~~G~~lG~idL~l~~~~g~~~v~~~~~~~~pi~~~~~~~~~v~~D~~v~~~v~~~ 323 (626)
T TIGR01390 251 -GADITN------GTINGVPAVMAGYWGNHLGVVDLQLNYDSGKWTVTSAKAELRPIYDKANKKSLVTPDPAIVRALKAD 323 (626)
T ss_pred -cccccc------cccCCEEEEeCChhhcEEEEEEEEEEecCCeEEEEeeEEEEEEccccccccccCCCCHHHHHHHHHH
Confidence 000111 1223899999999999999999999865 44 5555555554421 378999999999987
Q ss_pred C
Q psy11241 148 R 148 (148)
Q Consensus 148 ~ 148 (148)
+
T Consensus 324 ~ 324 (626)
T TIGR01390 324 H 324 (626)
T ss_pred H
Confidence 4
No 8
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=99.92 E-value=4.7e-24 Score=187.48 Aligned_cols=135 Identities=27% Similarity=0.372 Sum_probs=105.0
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH----------HHHhhCCCccEEEeCCccceecCCCCCCCC
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ----------TVAKASKHVSIVVGGHSHTFLYSGKPPCPH 75 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~----------~la~~~~~iDvIlgGH~H~~~~~~~~~~~~ 75 (148)
++++|.|+++++++++++||++ |||+||+|+|+|++.|. .|| +++|||+||+||+|..++++..+
T Consensus 287 g~v~f~D~veaa~~~v~~Lr~~-GaDvIIaLsH~G~~~d~~~~~~En~~~~LA-~v~GIDaIvgGHsH~~~p~~~~~--- 361 (814)
T PRK11907 287 GKVIVRDAVEAVRDIIPTMRAA-GADIVLVLSHSGIGDDQYEVGEENVGYQIA-SLSGVDAVVTGHSHAEFPSGNGT--- 361 (814)
T ss_pred CCeEECCHHHHHHHHHHHHHhc-CCCEEEEEeCCCcccccccccccchhhHHh-cCCCCCEEEECCCCCcccCcccc---
Confidence 4799999999999999999998 99999999999998664 566 68999999999999998642210
Q ss_pred CCCCCCCCEEEecCCCC--ceEEEEecCccccceeEEEEEEecC-CC--EEEEeceEEecC-CCCCCCHHHHHHhHhhC
Q psy11241 76 DKPKGPYPIVVTSSVDN--RQVLVVQAAAYSRYLGLIHLQYNDK-GN--IVSWRGDPILLD-KHIQEGNIVVLFAKRFR 148 (148)
Q Consensus 76 ~~~~~~~p~~v~~~~~g--~~~~vvq~g~~g~~lg~l~l~~~~~-g~--v~~~~~~~i~~~-~~~~~D~~i~~~v~~~~ 148 (148)
....+||. +.. ..| ++++++|+|+||++||+++|+|+.+ |+ |+.++.+.+++. ...++|+++.+++++|+
T Consensus 362 -~~~~~~p~-vd~-~~g~ingvpvVqaG~~G~~LG~IdL~l~~~~g~~~V~~~~~~~~~i~~~~~~~D~~i~~~l~~~h 437 (814)
T PRK11907 362 -SFYAKYSG-VDD-INGKINGTPVTMAGKYGDHLGIIDLNLSYTDGKWTVTSSKAKIRKIDTKSTVADGRIIDLAKEAH 437 (814)
T ss_pred -ccccccCc-ccc-cCCcCCCEEEEecChhhceEEEEEEEEEccCCcEEEEEeeeeEEEccCCCCCCCHHHHHHHHHHH
Confidence 01234443 212 333 3799999999999999999999854 44 566666655543 35788999999998863
No 9
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=99.91 E-value=1.3e-23 Score=166.29 Aligned_cols=119 Identities=27% Similarity=0.383 Sum_probs=93.2
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchh----------hHHHHhhC--CCccEEEeCCccceecC-CCCC
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDL----------DQTVAKAS--KHVSIVVGGHSHTFLYS-GKPP 72 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~----------d~~la~~~--~~iDvIlgGH~H~~~~~-~~~~ 72 (148)
++++|.|+++++++++++||++ +||+||||+|+|.+. +.+||+++ ++||+|||||+|+.+.. ...+
T Consensus 151 ~~~~f~d~~~~~~~~v~~lk~~-~~D~VI~lsH~G~~~~~~~~~~~~~~~~lA~~~~~~giD~IigGHsH~~~~~~~~~~ 229 (285)
T cd07405 151 EGIEFRPPIHEAKEVVPELKQE-KPDIVIAATHMGHYDNGEHGSNAPGDVEMARALPAGGLDLIVGGHSQDPVCMAAENK 229 (285)
T ss_pred CCcEEcCHHHHHHHHHHHHHHc-CCCEEEEEecccccCCccccccCchHHHHHHhcCCCCCCEEEeCCCCccccCccccc
Confidence 4899999999999999999996 899999999999853 35899997 89999999999998841 0000
Q ss_pred CCCCC-CCCC-CCEEEecCCCCceEEEEecCccccceeEEEEEEecCCCEEEEeceEEecCC
Q psy11241 73 CPHDK-PKGP-YPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDK 132 (148)
Q Consensus 73 ~~~~~-~~~~-~p~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g~v~~~~~~~i~~~~ 132 (148)
..... ...+ .|..+ | +|+|+|+|++|++||+++|+|+ +|++..+++++++++.
T Consensus 230 ~~~~~~~~~~~~~~~~-~-----~~~v~q~g~~g~~vg~i~l~~~-~g~~~~~~~~li~~~~ 284 (285)
T cd07405 230 KQVDYVPGTPCKPDVQ-N-----GVWIVQAHEWGKYVGRADFEFR-NGKLKLVKYQLIPVNL 284 (285)
T ss_pred cccccccCccccCccc-C-----CEEEEeCChHHceeEEEEEEEE-CCeEEEeeeEEEeccC
Confidence 00000 0000 13334 4 7999999999999999999996 6898889999988764
No 10
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=99.91 E-value=1.1e-23 Score=182.46 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=100.3
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH--HH-------HhhCCCccEEEeCCccceecCCCCCCCCC
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ--TV-------AKASKHVSIVVGGHSHTFLYSGKPPCPHD 76 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~--~l-------a~~~~~iDvIlgGH~H~~~~~~~~~~~~~ 76 (148)
++++|.|+++++++++++||++ |||+||+|+|+|++.+. .+ +++++|||+||+||+|..++++.++.
T Consensus 196 g~v~~~D~ve~a~~~v~~Lk~~-gaDvII~LsH~G~~~d~~~~~aen~~~~l~~v~gID~Il~GHsH~~~p~~~~~~--- 271 (649)
T PRK09420 196 GKVTVRDITETARKYVPEMKEK-GADIVVAIPHSGISADPYKAMAENSVYYLSEVPGIDAIMFGHSHAVFPGKDFAD--- 271 (649)
T ss_pred CceEECCHHHHHHHHHHHHHHc-CCCEEEEEecCCcCCCCccccccchhHHHhcCCCCCEEEeCCCCccCcCccccc---
Confidence 4699999999999999999998 99999999999997652 22 35789999999999999986422111
Q ss_pred CCCCCCCEE-EecCCCCceEEEEecCccccceeEEEEEEecCC-C--EEEEeceEEecC------CCCCCCHHHHHHhHh
Q psy11241 77 KPKGPYPIV-VTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKG-N--IVSWRGDPILLD------KHIQEGNIVVLFAKR 146 (148)
Q Consensus 77 ~~~~~~p~~-v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g-~--v~~~~~~~i~~~------~~~~~D~~i~~~v~~ 146 (148)
+|.. +.+ ...++++++|+|+||++||.++|++++++ + ++..+++.+++. ..+++||++.+++++
T Consensus 272 -----~~~~d~~~-g~i~g~pvv~aG~~G~~lG~IdL~l~~~~~~w~v~~~~~~~~pi~~~~~~~~~~~~D~~v~~~v~~ 345 (649)
T PRK09420 272 -----IPGADIAK-GTLNGVPAVMPGRWGDHLGVVDLVLENDSGKWQVTDAKAEARPIYDKANKKSLAAEDPKLVAALKA 345 (649)
T ss_pred -----CCcccccc-ccCCCEEEEeCChhhcEEEEEEEEEEcCCCcEEEEeeEEEEEEccccccccccCCCCHHHHHHHHH
Confidence 1110 001 11238999999999999999999998764 3 555555544432 247899999999987
Q ss_pred hC
Q psy11241 147 FR 148 (148)
Q Consensus 147 ~~ 148 (148)
|+
T Consensus 346 ~~ 347 (649)
T PRK09420 346 DH 347 (649)
T ss_pred HH
Confidence 63
No 11
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=99.90 E-value=2.7e-23 Score=189.60 Aligned_cols=133 Identities=20% Similarity=0.337 Sum_probs=104.5
Q ss_pred CeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH----------HHHhhCCCccEEEeCCccceecCCCCCCCCC
Q psy11241 7 NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ----------TVAKASKHVSIVVGGHSHTFLYSGKPPCPHD 76 (148)
Q Consensus 7 ~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~----------~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~ 76 (148)
+++|.|+++++++++++||++ |||+||+|+|+|++.+. +||+++++||+||+||+|..++..+++..+.
T Consensus 213 ~~~~~d~v~~~~~~v~~lk~~-gaDvII~l~H~G~~~~~~~~~~en~~~~la~~~~gID~Il~GHsH~~~~~~~~~~~~~ 291 (1163)
T PRK09419 213 KVEVKNIVEEANKTIPEMKKG-GADVIVALAHSGIESEYQSSGAEDSVYDLAEKTKGIDAIVAGHQHGLFPGADYKGVPQ 291 (1163)
T ss_pred cEEECCHHHHHHHHHHHHHhc-CCCEEEEEeccCcCCCCCCCCcchHHHHHHHhCCCCcEEEeCCCcccccCcccccccc
Confidence 499999999999999999988 99999999999998663 7999999999999999999986322211000
Q ss_pred CCCCCCCEEEecCCCCceEEEEecCccccceeEEEEEEecCC---CEEEEeceEEecC-CCCCCCHHHHHHhHhhC
Q psy11241 77 KPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKG---NIVSWRGDPILLD-KHIQEGNIVVLFAKRFR 148 (148)
Q Consensus 77 ~~~~~~p~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g---~v~~~~~~~i~~~-~~~~~D~~i~~~v~~~~ 148 (148)
. ...+..+ | +++|+|+|+||++||+++|++++++ ++...+.+++++. ..+++||++.+++++|+
T Consensus 292 -~-~~~~~~i-~-----g~~ivqag~~g~~lg~idl~~~~~~~~~~v~~~~~~~~~i~~~~~~~d~~i~~~v~~~~ 359 (1163)
T PRK09419 292 -F-DNAKGTI-N-----GIPVVMPKSWGKYLGKIDLTLEKDGGKWKVVDKKSSLESISGKVVSRDETVVDALKDTH 359 (1163)
T ss_pred -c-ccccceE-C-----CEEEEccChhhcEEEEEEEEEEEcCCEEEEEeeEEEEEeeccccCCCCHHHHHHHHHHH
Confidence 0 0001234 4 8999999999999999999998764 3555555554443 36899999999999873
No 12
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=99.89 E-value=5.6e-23 Score=180.31 Aligned_cols=119 Identities=25% Similarity=0.332 Sum_probs=96.0
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhh-----HHH----HhhCCCccEEEeCCccceecCCCCCCCCC
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLD-----QTV----AKASKHVSIVVGGHSHTFLYSGKPPCPHD 76 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d-----~~l----a~~~~~iDvIlgGH~H~~~~~~~~~~~~~ 76 (148)
++++|.|+++++++++++||++ |||+||||+|+|++.| .+. +++++|||+|||||+|..+..
T Consensus 222 g~v~f~D~veaa~~~v~~Lr~~-GaDvIIaLsH~G~~~d~~~~~~ena~~~l~~v~gID~IlgGHsH~~~~~-------- 292 (780)
T PRK09418 222 GKVKAKDIVETAKKMVPKMKAE-GADVIVALAHSGVDKSGYNVGMENASYYLTEVPGVDAVLMGHSHTEVKD-------- 292 (780)
T ss_pred CCeEECCHHHHHHHHHHHHHhc-CCCEEEEEeccCcccccccccchhhhHHHhcCCCCCEEEECCCCCcccc--------
Confidence 3699999999999999999988 9999999999999866 222 378999999999999999842
Q ss_pred CCCCCCCEEEecCCCCceEEEEecCccccceeEEEEEEecC-CC--EEEEe--ceEEecC-----CCCCCCHHHHHHhHh
Q psy11241 77 KPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDK-GN--IVSWR--GDPILLD-----KHIQEGNIVVLFAKR 146 (148)
Q Consensus 77 ~~~~~~p~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~-g~--v~~~~--~~~i~~~-----~~~~~D~~i~~~v~~ 146 (148)
.+ | +++++|+|+||++||+++|+|+++ |+ +...+ .+.+++. ..+++|+++.+++++
T Consensus 293 --------~i-n-----gv~vvqaG~~G~~LG~IdL~ld~~~g~w~v~~~~~~~~l~~i~~~~~~~~v~~D~~i~~~l~~ 358 (780)
T PRK09418 293 --------VF-N-----GVPVVMPGVFGSNLGIIDMQLKKVNGKWEVQKEQSKPQLRPIADSKGNPLVQSDQNLVNEIKD 358 (780)
T ss_pred --------cC-C-----CEEEEEcChhhcEEEEEEEEEECCCCeEEEEeeecceEEeeccccccccCCCCCHHHHHHHHH
Confidence 34 6 799999999999999999999865 54 32332 2333332 237889999988876
Q ss_pred h
Q psy11241 147 F 147 (148)
Q Consensus 147 ~ 147 (148)
|
T Consensus 359 ~ 359 (780)
T PRK09418 359 D 359 (780)
T ss_pred H
Confidence 5
No 13
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=99.89 E-value=4.3e-23 Score=174.89 Aligned_cols=125 Identities=26% Similarity=0.474 Sum_probs=102.3
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCC--------ccEEEeCCccceecCCCCCCCCCC
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKH--------VSIVVGGHSHTFLYSGKPPCPHDK 77 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~--------iDvIlgGH~H~~~~~~~~~~~~~~ 77 (148)
++++|.|+++++++++++||++ |+|+||+|+|+|+..+.+++...++ ||+|++||+|+.++.+.
T Consensus 181 ~~~~f~d~~e~~~~~i~elk~~-~vD~iI~LsH~G~~~d~~~~~~~~~~~~~~~~~iD~i~~GH~H~~~~~~~------- 252 (517)
T COG0737 181 EGVTFRDPIEAAKKYIPELKGE-GVDVIIALSHLGIEDDLELASEVPGDVDVAVPGIDLIIGGHSHTVFPGGD------- 252 (517)
T ss_pred CCcEEcCHHHHHHHHHHHHHhc-CCCEEEEEeccCcCccccccccccccccccccCcceEeccCCcccccCCc-------
Confidence 4899999999999999999998 6999999999999999999988887 99999999999986421
Q ss_pred CCCCCCEEEecCCCCceEEEEecCccccceeEEEEEEecCCCEEEEeceEEecC--CCCCCCHHHHHHhHhhC
Q psy11241 78 PKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLD--KHIQEGNIVVLFAKRFR 148 (148)
Q Consensus 78 ~~~~~p~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g~v~~~~~~~i~~~--~~~~~D~~i~~~v~~~~ 148 (148)
+|..+ | +|+++|+|+||++||+++|+|+.++++..++.....+. ....+|+++.+++++|+
T Consensus 253 ----~~~~~-~-----~t~ivqag~~gk~vG~~di~~d~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~i~~~~ 315 (517)
T COG0737 253 ----KPGTV-N-----GTPIVQAGEYGKYVGVLDITFDGEGKVTDIKAVARPITDVTAKKEDPAVEALIEYLQ 315 (517)
T ss_pred ----ccCcc-C-----CEEEEccChhhCceeEEEEEEcCceeEEeeeccccceeecccCCCCHHHHHHHHHHH
Confidence 12223 4 89999999999999999999985566555554433332 22337999999999874
No 14
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=99.89 E-value=1.9e-22 Score=157.82 Aligned_cols=104 Identities=29% Similarity=0.464 Sum_probs=91.3
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCC-E
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYP-I 84 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p-~ 84 (148)
++++|.++++++++++.+++++++||+||+|+|+|.+.++++|+++++||+|||||+|..+.. | .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~~~~la~~~~~iDlilgGH~H~~~~~--------------~~~ 225 (264)
T cd07411 160 PGLTFGIREEELQEVVVKLRREEGVDVVVLLSHNGLPVDVELAERVPGIDVILSGHTHERTPK--------------PII 225 (264)
T ss_pred CCcEECCHHHHHHHHHHHHHHhCCCCEEEEEecCCchhhHHHHhcCCCCcEEEeCcccccccC--------------ccc
Confidence 489999999999999888876558999999999999999999999999999999999988743 2 1
Q ss_pred EEecCCCCceEEEEecCccccceeEEEEEEecCCCEEEEeceEEec
Q psy11241 85 VVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILL 130 (148)
Q Consensus 85 ~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g~v~~~~~~~i~~ 130 (148)
.+ | +|+++|+|++|+++|+++|+++ +|+|+.++++++++
T Consensus 226 ~~-~-----~t~v~~~g~~~~~vg~i~l~~~-~~~i~~~~~~~~~~ 264 (264)
T cd07411 226 AG-G-----GTLVVEAGSHGKFLGRLDLDVR-DGKIVDYRYELIPV 264 (264)
T ss_pred cc-C-----CEEEEEcCccccEEEEEEEEEE-CCEEEEEEEEEEeC
Confidence 23 4 8999999999999999999997 68888888887753
No 15
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=99.88 E-value=3.7e-22 Score=158.21 Aligned_cols=103 Identities=22% Similarity=0.346 Sum_probs=86.8
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchh-------------hHHHHhhC-CCccEEEeCCccceecCCCC
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDL-------------DQTVAKAS-KHVSIVVGGHSHTFLYSGKP 71 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~-------------d~~la~~~-~~iDvIlgGH~H~~~~~~~~ 71 (148)
.+++|.|+++++++++++||++ +||+||+|+|+|.+. +.++++++ ++||+|||||+|..+..
T Consensus 169 ~g~~f~d~~e~~~~~v~~lr~~-~~D~IIvL~H~G~~~~~~~~~~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~--- 244 (288)
T cd07412 169 AGLEFTDEVEAINAVAPELKAG-GVDAIVVLAHEGGSTKGGDDTCSAASGPIADIVNRLDPDVDVVFAGHTHQAYNC--- 244 (288)
T ss_pred cCceEcCHHHHHHHHHHHHHHC-CCCEEEEEeCCCCCCCCCCccccccChhHHHHHhhcCCCCCEEEeCccCccccc---
Confidence 4899999999999999999987 899999999999883 35566664 89999999999999842
Q ss_pred CCCCCCCCCCCC-EEEecCCCCceEEEEecCccccceeEEEEEEecCC-CEEEEeceEEe
Q psy11241 72 PCPHDKPKGPYP-IVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKG-NIVSWRGDPIL 129 (148)
Q Consensus 72 ~~~~~~~~~~~p-~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g-~v~~~~~~~i~ 129 (148)
| ..+ | +++++|+|++|++||+++|++++++ +++.++.+.+.
T Consensus 245 -----------~~~~~-~-----~~~v~q~g~~g~~vg~i~l~~~~~~~~v~~~~~~~~~ 287 (288)
T cd07412 245 -----------TVPAG-N-----PRLVTQAGSYGKAVADVDLTIDPATKDVVNKSAENVT 287 (288)
T ss_pred -----------cccCc-C-----CEEEEecChhhceeEEEEEEEECCCCeEEeeeeEEEe
Confidence 1 023 4 8999999999999999999999764 67777777664
No 16
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=99.88 E-value=4.2e-22 Score=155.41 Aligned_cols=97 Identities=27% Similarity=0.415 Sum_probs=85.1
Q ss_pred CeEEechHHHHHHH-HHHHhhcCCCCEEEEEeCCCchhh------HHHHhhCCCccEEEeCCccceecCCCCCCCCCCCC
Q psy11241 7 NLRILDEITSVNKE-ADRLVREDKVDIVIALSHAGVDLD------QTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPK 79 (148)
Q Consensus 7 ~v~f~d~~~~~~~~-v~~lr~~~g~D~iI~lsH~g~~~d------~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~ 79 (148)
+++|.|++++++++ +.++|++ +||+||+|+|+|.+.+ +++|+++++||+|||||+|+.+..
T Consensus 149 ~~~~~d~~~~~~~~~v~~l~~~-~~D~iIvl~H~G~~~~~~~~~~~~la~~~~giDvIigGH~H~~~~~----------- 216 (257)
T cd07408 149 DVTFEDPIEEAKKVIVAALKAK-GADVIVALGHLGVDRTSSPWTSTELAANVTGIDLIIDGHSHTTIEI----------- 216 (257)
T ss_pred CcEEecHHHHHHHHHHHHHHhC-CCCEEEEEeCcCcCCCCCCccHHHHHHhCCCceEEEeCCCcccccC-----------
Confidence 78999999999999 8999987 8999999999999887 899999999999999999998842
Q ss_pred CCCC-EEEecCCCCceEEEEecCccccceeEEEEEEecC-CCEEEEe
Q psy11241 80 GPYP-IVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDK-GNIVSWR 124 (148)
Q Consensus 80 ~~~p-~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~-g~v~~~~ 124 (148)
+ ..+ | +++++|+|++|+++|+++|+++++ ++++.++
T Consensus 217 ---~~~~~-~-----~~~ivq~g~~g~~vg~l~l~~~~~~~~~~~~~ 254 (257)
T cd07408 217 ---GKKDG-N-----NVLLTQTGAYLANIGEVTLVFDTTTGTIKLIS 254 (257)
T ss_pred ---ccccc-C-----CeEEEcCChHHceEEEEEEEEECCCceEEEec
Confidence 1 123 4 899999999999999999999875 5666654
No 17
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=99.87 E-value=7.3e-22 Score=155.34 Aligned_cols=90 Identities=29% Similarity=0.506 Sum_probs=81.0
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH-----------HHHhhCCCccEEEeCCccceecCCCCCCC
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ-----------TVAKASKHVSIVVGGHSHTFLYSGKPPCP 74 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~-----------~la~~~~~iDvIlgGH~H~~~~~~~~~~~ 74 (148)
+++.|.|+++++++++++||++ +||+||+|+|+|.+.+. +||+++++||+|||||+|..+..
T Consensus 161 ~~~~~~d~~~~~~~~v~~lr~~-~~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~------ 233 (277)
T cd07410 161 GGLKFTDPVETAKKYVPKLRAE-GADVVVVLAHGGFERDLEESLTGENAAYELAEEVPGIDAILTGHQHRRFPG------ 233 (277)
T ss_pred CCcEEcCHHHHHHHHHHHHHHc-CCCEEEEEecCCcCCCcccccCCccHHHHHHhcCCCCcEEEeCCCcccccc------
Confidence 4899999999999999999986 89999999999998874 89999999999999999998742
Q ss_pred CCCCCCCCCEEEecCCCCceEEEEecCccccceeEEEEEEecC
Q psy11241 75 HDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDK 117 (148)
Q Consensus 75 ~~~~~~~~p~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~ 117 (148)
+ .+ + +++|+|+|++|+++|+++|+++++
T Consensus 234 --------~-~~-~-----~~~v~q~g~~g~~vg~l~l~~~~~ 261 (277)
T cd07410 234 --------P-TV-N-----GVPVVQPGNWGSHLGVIDLTLEKD 261 (277)
T ss_pred --------C-Cc-C-----CEEEEcCChhhCEEEEEEEEEEEc
Confidence 1 23 4 799999999999999999999965
No 18
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=99.84 E-value=1.7e-20 Score=148.52 Aligned_cols=94 Identities=19% Similarity=0.288 Sum_probs=78.7
Q ss_pred CCCCeEEechHHHHHH-HH-HHHhhcCCCCEEEEEeCCCchhh-------HHHHhhCCCcc-EEEeCCccceecCCCCCC
Q psy11241 4 STGNLRILDEITSVNK-EA-DRLVREDKVDIVIALSHAGVDLD-------QTVAKASKHVS-IVVGGHSHTFLYSGKPPC 73 (148)
Q Consensus 4 ~~~~v~f~d~~~~~~~-~v-~~lr~~~g~D~iI~lsH~g~~~d-------~~la~~~~~iD-vIlgGH~H~~~~~~~~~~ 73 (148)
..++++|.|+++++++ ++ ++||++ ++|+||+|+|+|++.| ..||+++|++| +||+||+|+....
T Consensus 161 ~~~~~~f~d~~~~~~~~~v~~~l~~~-~~DvIIvlsH~G~~~d~~~~~~~~~la~~~~~id~~Ii~GHsH~~~~~----- 234 (282)
T cd07407 161 AANGVTVQPVADVVQEPWFQDAINNE-DVDLILVLGHMPVRDDAEFKVLHDAIRKIFPDTPIQFLGGHSHVRDFT----- 234 (282)
T ss_pred CCCCcEEcCHHHHHHHHHHHHHHHhc-CCCEEEEEeCCCCCCCccHHHHHHHHHHhCCCCCEEEEeCCcccccce-----
Confidence 3569999999999986 55 567766 8999999999999887 57888899999 7999999987631
Q ss_pred CCCCCCCCCCEEEecCCCCceEEEEecCccccceeEEEEEEecCCC
Q psy11241 74 PHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGN 119 (148)
Q Consensus 74 ~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g~ 119 (148)
..+ + +|+++|+|+||++||+++|++++.+.
T Consensus 235 ----------~~~-~-----~~~ivq~G~~g~~lg~v~l~~~~~~~ 264 (282)
T cd07407 235 ----------QYD-S-----SSTGLESGRYLETVGWVSFDGTKASD 264 (282)
T ss_pred ----------ecc-C-----cEEEEeccchhhceEEEEEccccccc
Confidence 122 5 79999999999999999999986543
No 19
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.77 E-value=4.1e-18 Score=131.85 Aligned_cols=100 Identities=35% Similarity=0.605 Sum_probs=81.7
Q ss_pred CeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEEE
Q psy11241 7 NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVV 86 (148)
Q Consensus 7 ~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v 86 (148)
++.|.++.+++++...+.+ + +||+||+|+|.|.+.++++|+++++||+|||||+|..... |..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~-~-~~D~vIvl~H~g~~~~~~la~~~~giDlvlggH~H~~~~~--------------~~~~ 213 (252)
T cd00845 150 GLPFEDLAEAVAVAEELLA-E-GADVIILLSHLGLDDDEELAEEVPGIDVILGGHTHHLLEE--------------PEVV 213 (252)
T ss_pred CceecCHHHHHHHHHHHHh-C-CCCEEEEEeccCccchHHHHhcCCCccEEEcCCcCcccCC--------------Cccc
Confidence 6788999998888444444 4 6999999999999999999999999999999999987742 2223
Q ss_pred ecCCCCceEEEEecCccccceeEEEEEEecCC-CEEEEeceEE
Q psy11241 87 TSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKG-NIVSWRGDPI 128 (148)
Q Consensus 87 ~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g-~v~~~~~~~i 128 (148)
+ +++++|+|++|+++|+++|++++.+ ++..++++.+
T Consensus 214 -~-----~~~v~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 250 (252)
T cd00845 214 -N-----GTLIVQAGKYGKYVGEIDLELDDDTKKVVTVSGELI 250 (252)
T ss_pred -C-----CEEEEeCChhHceEEEEEEEEECCCCeEeeeeeeEc
Confidence 4 8999999999999999999998765 3656655543
No 20
>KOG4419|consensus
Probab=99.52 E-value=3.9e-14 Score=119.58 Aligned_cols=142 Identities=29% Similarity=0.440 Sum_probs=113.8
Q ss_pred CCCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHH-------HHhhCCCccE-EEeCCccceecCCCCCCCCC
Q psy11241 5 TGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQT-------VAKASKHVSI-VVGGHSHTFLYSGKPPCPHD 76 (148)
Q Consensus 5 ~~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~-------la~~~~~iDv-IlgGH~H~~~~~~~~~~~~~ 76 (148)
+..+.+.+.+...+-+.++++.+ ++|+||++.|.++..+.+ |+..+|+.++ ++|||+|....-..-+...+
T Consensus 202 ~~~v~~veei~~~~~~~~m~~~~-~idlii~lgH~~~~~~~e~~~~~~~ir~~~p~t~IqviGGHshird~a~~d~~s~~ 280 (602)
T KOG4419|consen 202 RTVVVPVEEITQSEWEQDMVNTT-DIDLIIALGHSPVRDDDEWKSLHAEIRKVHPNTPIQVIGGHSHIRDFAVYDEKSVE 280 (602)
T ss_pred CcccccHHHHhccchHHHHhhcc-CccEEEEecccccccchhhhhHHHHHhhhCCCCceEEECchhhhhhhhhcCCcccc
Confidence 33444455555556678888887 899999999999988766 8888999999 99999998764321111123
Q ss_pred CCCCCCCEEEecCCCCceEEEEecCccccceeEEEEEEecCCCEEEEeceEEecCCCCCCCHHHHHHhHhhC
Q psy11241 77 KPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDKHIQEGNIVVLFAKRFR 148 (148)
Q Consensus 77 ~~~~~~p~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~~~g~v~~~~~~~i~~~~~~~~D~~i~~~v~~~~ 148 (148)
-..++||..| +-.+++++.|+|+....+|+|.++++++..+........++.+++.+++||+++..+.+|+
T Consensus 281 l~~GrypetV-~~~s~~~v~v~~~~a~~~y~g~i~~e~d~~~~~~~~~~~p~~~tr~~~d~~~fk~hl~k~~ 351 (602)
T KOG4419|consen 281 LESGRYPETV-GWLSINKVGVVQANATRKYLGPITIEFDQSGNNLPSPGSPILFTRSYIDDQNFKFHLSKYR 351 (602)
T ss_pred cccCCCccee-eeeeccCcceeeeeeeeeeeeeEEeehhhcccccCCCCCceEeeeccCCcHHHHHHHHHhh
Confidence 4568999988 4488889999999999999999999998878776777778888989999999999999986
No 21
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.42 E-value=7.9e-13 Score=103.38 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=72.7
Q ss_pred EEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH-HHHhhCCC-ccEEEeCCccceecCCCCCCCCCCCCCCCCEEE
Q psy11241 9 RILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ-TVAKASKH-VSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVV 86 (148)
Q Consensus 9 ~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~-~la~~~~~-iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v 86 (148)
.|.+|.+++++++++||++ +|+||+++|+|...++ .+|..+++ ||+|+|||+|..... ..++
T Consensus 122 ~~~~P~~~~~~~v~~lk~~--~D~IIV~~H~g~tsEk~ala~~ldg~VdvIvGtHTHv~t~d--------------~~il 185 (255)
T cd07382 122 PLDNPFRAADELLEELKEE--ADIIFVDFHAEATSEKIALGWYLDGRVSAVVGTHTHVQTAD--------------ERIL 185 (255)
T ss_pred cCCCHHHHHHHHHHHHhcC--CCEEEEEECCCCCHHHHHHHHhCCCCceEEEeCCCCccCCc--------------cEEe
Confidence 5779999999999999985 9999999999988766 48888886 999999999999853 2334
Q ss_pred ecCCCCceE-EEEecCccccceeEEEEEEe
Q psy11241 87 TSSVDNRQV-LVVQAAAYSRYLGLIHLQYN 115 (148)
Q Consensus 87 ~~~~~g~~~-~vvq~g~~g~~lg~l~l~~~ 115 (148)
.+ +| +++.+|.+|.|=+.+-.+.+
T Consensus 186 ~~-----gTa~itd~Gm~G~~~sviG~~~~ 210 (255)
T cd07382 186 PG-----GTAYITDVGMTGPYDSVIGMKKE 210 (255)
T ss_pred eC-----CeEEEecCccccCCCcEeeeChH
Confidence 24 56 99999999999888887765
No 22
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=99.18 E-value=1.1e-10 Score=90.20 Aligned_cols=59 Identities=24% Similarity=0.415 Sum_probs=49.1
Q ss_pred CCeEEec--hHHHHHHHHHHHhhcCCCCEEEEEeCCCchhh-------HHHHhhC--CCccEEEeCCcccee
Q psy11241 6 GNLRILD--EITSVNKEADRLVREDKVDIVIALSHAGVDLD-------QTVAKAS--KHVSIVVGGHSHTFL 66 (148)
Q Consensus 6 ~~v~f~d--~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d-------~~la~~~--~~iDvIlgGH~H~~~ 66 (148)
.++.+.+ ..+++++.+++||++ ||+||+++|+|.+.+ +++|+++ .|+|+|+|||+|...
T Consensus 149 ~g~~~~~~~~~~~i~~~i~~lr~~--~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~ 218 (239)
T smart00854 149 PGVALLPDLDREKILADIARARKK--ADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQ 218 (239)
T ss_pred CCeeecCcCCHHHHHHHHHHHhcc--CCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCCcCC
Confidence 3555554 378999999999975 999999999998642 5788886 789999999999876
No 23
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=99.09 E-value=3.4e-10 Score=87.26 Aligned_cols=57 Identities=23% Similarity=0.340 Sum_probs=49.9
Q ss_pred eEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchh-------hHHHHhhC--CCccEEEeCCcccee
Q psy11241 8 LRILDEITSVNKEADRLVREDKVDIVIALSHAGVDL-------DQTVAKAS--KHVSIVVGGHSHTFL 66 (148)
Q Consensus 8 v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~-------d~~la~~~--~~iDvIlgGH~H~~~ 66 (148)
+.|.+..+++++.++++|++ ||+||+++|+|.+. .+++|+++ .|+|+|+|||+|...
T Consensus 155 ~~~~~~~~~~~~~i~~lr~~--~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q 220 (239)
T cd07381 155 GVNPLDLERIAADIAEAKKK--ADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVLQ 220 (239)
T ss_pred ccCccCHHHHHHHHHHHhhc--CCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCC
Confidence 36778889999999999988 99999999999864 36788775 589999999999876
No 24
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=98.60 E-value=1.9e-07 Score=72.57 Aligned_cols=54 Identities=24% Similarity=0.441 Sum_probs=45.4
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchh-------hHHHHhhC--CCccEEEeCCcccee
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDL-------DQTVAKAS--KHVSIVVGGHSHTFL 66 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~-------d~~la~~~--~~iDvIlgGH~H~~~ 66 (148)
.+.++.+.+.++++|+ +||+||++.|+|.+. .+++|.++ .|+|+|+|+|+|...
T Consensus 167 ~~~~~~i~~~i~~~r~--~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q 229 (250)
T PF09587_consen 167 RPGIERIKEDIREARK--KADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHPHVIQ 229 (250)
T ss_pred cchHHHHHHHHHHHhc--CCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCCCccc
Confidence 4456999999999994 599999999999653 36777776 689999999999887
No 25
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.37 E-value=1.6e-06 Score=68.29 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=48.4
Q ss_pred eEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC--CCccEEEeCCccceec
Q psy11241 8 LRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS--KHVSIVVGGHSHTFLY 67 (148)
Q Consensus 8 v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~--~~iDvIlgGH~H~~~~ 67 (148)
+.+.+|.+++++++++++++ +|+||++.|.|.+..+..+..+ -++|+|+|-|+|....
T Consensus 124 ~~~~~Pf~~~d~~i~~lk~~--~d~IIVd~HaeatsEK~a~~~~ldg~vsaVvGtHtHV~Ta 183 (266)
T TIGR00282 124 FKTTNPFKVLKELINMLKKD--CDLIFVDFHAETTSEKNAFGMAFDGYVTAVVGTHTHVPTA 183 (266)
T ss_pred cccCCHHHHHHHHHHhhhcC--CCEEEEEeCCCCHHHHHHHHHHhCCCccEEEeCCCCCCCC
Confidence 33678999999999999987 9999999999988776555543 4699999999998764
No 26
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.00072 Score=55.65 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=40.8
Q ss_pred CeEEech--HHHHHHHHHHHhhcCCCCEEEEEeCCCch-------hhHHHHhhC--CCccEEEeCCcccee
Q psy11241 7 NLRILDE--ITSVNKEADRLVREDKVDIVIALSHAGVD-------LDQTVAKAS--KHVSIVVGGHSHTFL 66 (148)
Q Consensus 7 ~v~f~d~--~~~~~~~v~~lr~~~g~D~iI~lsH~g~~-------~d~~la~~~--~~iDvIlgGH~H~~~ 66 (148)
++.-.+. .+.+...+...+++ +|+||+..|+|.+ ..+.+|.++ -|+|+|+|+|.|...
T Consensus 201 g~~~~~d~~~~~~~~~v~~a~k~--adlviv~~HwG~ey~~~p~~~q~~~a~~lidAGa~iIvGhhpHvlq 269 (372)
T COG2843 201 GVWLEDDEALERVLAAVLAAKKG--ADLVIVQPHWGVEYAYEPAAGQRALARRLIDAGADIIVGHHPHVLQ 269 (372)
T ss_pred ccccCCcchhhhhHHHHHhhhcc--CCEEEEeccccccccCCCcHHHHHHHHHHHhcCcCeEecCCCCcCc
Confidence 3444444 44444455555544 9999999999865 245677765 789999999999876
No 27
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=96.81 E-value=0.0028 Score=46.98 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=37.9
Q ss_pred CEEEEEeCCCc------hhh-HHHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCcc
Q psy11241 31 DIVIALSHAGV------DLD-QTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAY 103 (148)
Q Consensus 31 D~iI~lsH~g~------~~d-~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~ 103 (148)
++=|.++|... ... ..+|++ .+.|+++.||||..... .+ + +++++++|+-
T Consensus 81 g~ki~l~HGh~~~~~~~~~~l~~la~~-~~~Dvli~GHTH~p~~~----------------~~-~-----~i~~vNPGS~ 137 (172)
T COG0622 81 GVKIFLTHGHLYFVKTDLSLLEYLAKE-LGADVLIFGHTHKPVAE----------------KV-G-----GILLVNPGSV 137 (172)
T ss_pred CEEEEEECCCccccccCHHHHHHHHHh-cCCCEEEECCCCcccEE----------------EE-C-----CEEEEcCCCc
Confidence 36688888732 112 234444 57999999999998742 33 4 6999999987
Q ss_pred ccceeE
Q psy11241 104 SRYLGL 109 (148)
Q Consensus 104 g~~lg~ 109 (148)
....+.
T Consensus 138 s~pr~~ 143 (172)
T COG0622 138 SGPRGG 143 (172)
T ss_pred CCCCCC
Confidence 665554
No 28
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=96.68 E-value=0.0015 Score=49.18 Aligned_cols=44 Identities=25% Similarity=0.227 Sum_probs=31.0
Q ss_pred HHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCcccee
Q psy11241 20 EADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 20 ~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~ 66 (148)
..+.++..++.++.|+|+|.....+.. ...++|++++||+|...
T Consensus 124 ~~~~~~~~~~~~~~I~l~H~P~~~~~~---~~~~~dl~l~GHtHggq 167 (223)
T cd07385 124 LEKALKGLDEDDPNILLAHQPDTAEEA---AAWGVDLQLSGHTHGGQ 167 (223)
T ss_pred HHHHHhCCCCCCCEEEEecCCChhHHh---cccCccEEEeccCCCCE
Confidence 344455433688999999986543322 34689999999999754
No 29
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=96.33 E-value=0.008 Score=41.27 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=29.3
Q ss_pred HHHhhcCCCCEEEEEeCCCchhh----------------HHHHhhCCCccEEEeCCccce
Q psy11241 22 DRLVREDKVDIVIALSHAGVDLD----------------QTVAKASKHVSIVVGGHSHTF 65 (148)
Q Consensus 22 ~~lr~~~g~D~iI~lsH~g~~~d----------------~~la~~~~~iDvIlgGH~H~~ 65 (148)
..+... ..+.+|+++|.+.... ...+.+-.++|++++||+|.+
T Consensus 142 ~~~~~~-~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 142 LLLEAK-NDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HHHHEE-EESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred cccccc-cccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 333444 5889999999987532 112223478999999999964
No 30
>PRK09453 phosphodiesterase; Provisional
Probab=96.04 E-value=0.012 Score=43.34 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=32.5
Q ss_pred EEEeCCCchhhHHHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCcccc
Q psy11241 34 IALSHAGVDLDQTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSR 105 (148)
Q Consensus 34 I~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~g~ 105 (148)
|+++|........++ +..+.|+++.||+|.... ..+ + +++++++|+.+.
T Consensus 100 i~l~HG~~~~~~~~~-~~~~~d~vi~GHtH~p~~----------------~~~-~-----~~~~iNpGs~~~ 148 (182)
T PRK09453 100 LFLTHGHLYGPENLP-ALHDGDVLVYGHTHIPVA----------------EKQ-G-----GIILFNPGSVSL 148 (182)
T ss_pred EEEECCCCCChhhcc-cccCCCEEEECCCCCCcc----------------eEE-C-----CEEEEECCCccc
Confidence 678886432222233 235789999999998663 123 4 689999998773
No 31
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=96.02 E-value=0.023 Score=42.00 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=32.9
Q ss_pred EEEEEeCCCch----hhH---HHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCccc
Q psy11241 32 IVIALSHAGVD----LDQ---TVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYS 104 (148)
Q Consensus 32 ~iI~lsH~g~~----~d~---~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~g 104 (148)
.=|.++|.... ... .+++ -.++|+|+.||+|..... .+ + +++++++|+-+
T Consensus 79 ~~i~l~HG~~~~~~~~~~~~~~~~~-~~~~dvii~GHTH~p~~~----------------~~-~-----g~~viNPGSv~ 135 (178)
T cd07394 79 FKIGLIHGHQVVPWGDPDSLAALQR-QLDVDILISGHTHKFEAF----------------EH-E-----GKFFINPGSAT 135 (178)
T ss_pred EEEEEEECCcCCCCCCHHHHHHHHH-hcCCCEEEECCCCcceEE----------------EE-C-----CEEEEECCCCC
Confidence 45678885321 112 2333 367899999999987631 23 4 68999999876
No 32
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=95.99 E-value=0.021 Score=40.97 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=31.9
Q ss_pred EEEEeCCCc--h-hhH----HHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCcccc
Q psy11241 33 VIALSHAGV--D-LDQ----TVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSR 105 (148)
Q Consensus 33 iI~lsH~g~--~-~d~----~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~g~ 105 (148)
=|+++|... . .+. .++ +..++|+|+.||+|..... .+ + +++++++|+.+.
T Consensus 80 ~i~l~Hg~~~~~~~~~~~l~~~~-~~~~~d~vi~GHtH~~~~~----------------~~-~-----~~~~iNpGs~~~ 136 (158)
T TIGR00040 80 DFGLVHGDLVYPRGDLLVLEYLA-KELGVDVLIFGHTHIPVAE----------------EL-R-----GILLINPGSLTG 136 (158)
T ss_pred EEEEEeCcccccCCCHHHHHHHH-hccCCCEEEECCCCCCccE----------------EE-C-----CEEEEECCcccc
Confidence 477888651 1 111 222 2357899999999987631 23 4 578888988663
No 33
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=95.46 E-value=0.042 Score=39.01 Aligned_cols=53 Identities=23% Similarity=0.202 Sum_probs=35.1
Q ss_pred CEEEEEeCCCchhh------HHHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCccc
Q psy11241 31 DIVIALSHAGVDLD------QTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYS 104 (148)
Q Consensus 31 D~iI~lsH~g~~~d------~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~g 104 (148)
..-|+++|...... ..+++ ..++|+++.||+|.... ..+ + +++++++|+-+
T Consensus 75 g~~i~v~Hg~~~~~~~~~~~~~~~~-~~~~d~vi~GHtH~~~~----------------~~~-~-----~~~~inpGs~~ 131 (155)
T cd00841 75 GKRIFLTHGHLYGVKNGLDRLYLAK-EGGADVVLYGHTHIPVI----------------EKI-G-----GVLLLNPGSLS 131 (155)
T ss_pred CEEEEEECCcccccccchhhhhhhh-hcCCCEEEECcccCCcc----------------EEE-C-----CEEEEeCCCcc
Confidence 35688888754321 12233 25789999999998763 123 4 68899998876
Q ss_pred cc
Q psy11241 105 RY 106 (148)
Q Consensus 105 ~~ 106 (148)
..
T Consensus 132 ~~ 133 (155)
T cd00841 132 LP 133 (155)
T ss_pred Cc
Confidence 54
No 34
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=94.99 E-value=0.076 Score=41.65 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=37.3
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH-HHHhhCCC-ccEEEeCCccceec
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ-TVAKASKH-VSIVVGGHSHTFLY 67 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~-~la~~~~~-iDvIlgGH~H~~~~ 67 (148)
.+|..++.+++++|+.+ +|+|++=.|.--..++ .|+-.++| +.+|+|-|+|....
T Consensus 122 ~~PF~~~d~~l~~l~~~--~~~iiVDFHAEaTSEK~A~g~~lDGrvsaV~GTHTHVqTa 178 (253)
T PF13277_consen 122 DCPFRAADRLLEELKEE--TDIIIVDFHAEATSEKQAMGWYLDGRVSAVVGTHTHVQTA 178 (253)
T ss_dssp S-HHHHHHHHHHH-------SEEEEEEE-S-HHHHHHHHHHHBTTBSEEEEESSSS-BS
T ss_pred CChHHHHHHHHHhcccc--CCEEEEEeecCcHHHHHHHHHHhCCcEEEEEeCCCCccCc
Confidence 37899999999999776 9999999998655443 34445555 99999999998875
No 35
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=94.48 E-value=0.22 Score=37.76 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCchh-------------hH---HHHhhCCCccEEEeCCcccee
Q psy11241 16 SVNKEADRLVREDKVDIVIALSHAGVDL-------------DQ---TVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH~g~~~-------------d~---~la~~~~~iDvIlgGH~H~~~ 66 (148)
.++.+.+.|++. ....+|+++|-.... .. ++.++.++++++++||.|...
T Consensus 130 ql~wL~~~L~~~-~~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~ 195 (240)
T cd07402 130 QLDWLEAALAEA-PDKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPI 195 (240)
T ss_pred HHHHHHHHHHhC-CCCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchH
Confidence 334444445554 245677888864211 11 344445689999999999865
No 36
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=94.25 E-value=0.43 Score=36.34 Aligned_cols=15 Identities=13% Similarity=-0.053 Sum_probs=12.6
Q ss_pred CCccEEEeCCcccee
Q psy11241 52 KHVSIVVGGHSHTFL 66 (148)
Q Consensus 52 ~~iDvIlgGH~H~~~ 66 (148)
.+.|+|+.||+|...
T Consensus 178 ~~~~~vv~GHTh~~~ 192 (218)
T PRK09968 178 NGADYFIFGHMMFDN 192 (218)
T ss_pred CCCCEEEECCCCcCc
Confidence 467999999999765
No 37
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=94.09 E-value=0.1 Score=40.89 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCchh-------------h----HHHHhhCCCccEEEeCCcccee
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDL-------------D----QTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~-------------d----~~la~~~~~iDvIlgGH~H~~~ 66 (148)
...+.+++.+++.+++ +...+|++.|..+.. . ..|.++. ++|++|+||.|...
T Consensus 137 ~q~~WL~~~L~~~~~~-~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~v~~vl~GH~H~y~ 206 (294)
T cd00839 137 PQYDWLEADLAKVDRS-KTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKY-GVDLVLSGHVHAYE 206 (294)
T ss_pred HHHHHHHHHHHHhccc-CCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHh-CCCEEEEccceeeE
Confidence 3445555555555443 456799999976531 0 1233443 79999999999875
No 38
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=93.95 E-value=0.2 Score=37.66 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=22.9
Q ss_pred CccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCcccc
Q psy11241 53 HVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSR 105 (148)
Q Consensus 53 ~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~g~ 105 (148)
+.++|+.||+|.... ... + +++++.+|+.+.
T Consensus 168 ~~~~iV~GHTh~~~~----------------~~~-~-----~~i~ID~Gsv~g 198 (207)
T cd07424 168 GVDAVVHGHTPVKRP----------------LRL-G-----NVLYIDTGAVFD 198 (207)
T ss_pred CCCEEEECCCCCCcc----------------eEE-C-----CEEEEECCCCCC
Confidence 468999999998652 233 4 588889998754
No 39
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=93.82 E-value=0.11 Score=40.39 Aligned_cols=57 Identities=26% Similarity=0.233 Sum_probs=39.4
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCch---------------------hhHHHHhhC------CCccEEEeCCcc
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVD---------------------LDQTVAKAS------KHVSIVVGGHSH 63 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~---------------------~d~~la~~~------~~iDvIlgGH~H 63 (148)
.+.-++++++++.++.-..-+-.|+++|.+.. .|..|++++ .-+++++.||.|
T Consensus 127 ~s~~eA~~~ive~~~~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H 206 (238)
T cd07397 127 ISLEESAQRIIAAAKKAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMH 206 (238)
T ss_pred CCHHHHHHHHHHHhhhcCCCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCcc
Confidence 46678888888888532134558999998643 135565443 237999999999
Q ss_pred ceec
Q psy11241 64 TFLY 67 (148)
Q Consensus 64 ~~~~ 67 (148)
..+.
T Consensus 207 ~~l~ 210 (238)
T cd07397 207 HRLR 210 (238)
T ss_pred Cccc
Confidence 9874
No 40
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=93.60 E-value=0.42 Score=36.95 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCchh------h----------HHHHhhC--CCccEEEeCCcccee
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHAGVDL------D----------QTVAKAS--KHVSIVVGGHSHTFL 66 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~------d----------~~la~~~--~~iDvIlgGH~H~~~ 66 (148)
.++.+++.+++.++. +...+|+++|..... + .++.+.+ .+||++++||.|...
T Consensus 149 ql~WL~~~L~~~~~~-~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~ 219 (262)
T cd07395 149 QDVWLEEQLEIAKES-DCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNA 219 (262)
T ss_pred HHHHHHHHHHHHHhc-cCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCC
Confidence 344555555544422 456788999976421 0 1222222 489999999999865
No 41
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=93.51 E-value=1.5 Score=34.36 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCch------------hh---HHHHhhCCCccEEEeCCcccee
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHAGVD------------LD---QTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~------------~d---~~la~~~~~iDvIlgGH~H~~~ 66 (148)
.++.+++.+++.+ +-..+|++.|--+. +. .++.++.++++++++||.|..+
T Consensus 143 ql~wL~~~L~~~~---~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~ 208 (275)
T PRK11148 143 QLEWLERKLADAP---ERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQEL 208 (275)
T ss_pred HHHHHHHHHhhCC---CCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHH
Confidence 3445555554433 23467788884431 11 2344556789999999999876
No 42
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=93.05 E-value=0.34 Score=37.79 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCchh-----------h---HHHHhhCCCccEEEeCCcccee
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHAGVDL-----------D---QTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~-----------d---~~la~~~~~iDvIlgGH~H~~~ 66 (148)
....+++.++..+.. -.-+|+++|-.... . .++.++.++++++++||.|...
T Consensus 164 Ql~WL~~~L~~~~~~--~~~viV~~Hhp~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~ 229 (267)
T cd07396 164 QLQWLRNELQEADAN--GEKVIIFSHFPLHPESTSPHGLLWNHEEVLSILRAYGCVKACISGHDHEGG 229 (267)
T ss_pred HHHHHHHHHHHHHhc--CCeEEEEEeccCCCCCCCccccccCHHHHHHHHHhCCCEEEEEcCCcCCCC
Confidence 344555555544433 34578888864311 1 1344455789999999999886
No 43
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=93.03 E-value=0.68 Score=35.95 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=28.6
Q ss_pred HHHHHhhcCCCCEEEEEeCCCchhh-------------HHHHhhCCCccEEEeCCcccee
Q psy11241 20 EADRLVREDKVDIVIALSHAGVDLD-------------QTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 20 ~v~~lr~~~g~D~iI~lsH~g~~~d-------------~~la~~~~~iDvIlgGH~H~~~ 66 (148)
+-++|++. ..+.+|+++|-.+... ..+.++ .+++++|+||.|...
T Consensus 157 L~~~L~~~-~~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~-~~v~~vl~GH~H~~~ 214 (277)
T cd07378 157 LEKTLAAS-TADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKK-YKVDAYLSGHDHNLQ 214 (277)
T ss_pred HHHHHHhc-CCCeEEEEeCccceeCCCCCCcHHHHHHHHHHHHH-cCCCEEEeCCcccce
Confidence 44445544 3478899999654210 123333 359999999999865
No 44
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=92.49 E-value=0.32 Score=33.88 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=24.0
Q ss_pred CCCEEEEEeCCCc---h--------hhHH---HHhhCCCccEEEeCCccceec
Q psy11241 29 KVDIVIALSHAGV---D--------LDQT---VAKASKHVSIVVGGHSHTFLY 67 (148)
Q Consensus 29 g~D~iI~lsH~g~---~--------~d~~---la~~~~~iDvIlgGH~H~~~~ 67 (148)
..|+-|+++|... . ..+. ++.+. ++++++.||+|....
T Consensus 54 N~D~~Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~~~-~~~~vl~GH~H~~~~ 105 (129)
T cd07403 54 NHDVDILLTHAPPAGIGDGEDFAHRGFEAFLDFIDRF-RPKLFIHGHTHLNYG 105 (129)
T ss_pred CCccCEEEECCCCCcCcCcccccccCHHHHHHHHHHH-CCcEEEEcCcCCCcC
Confidence 4676578888632 1 1122 33332 589999999998874
No 45
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=92.28 E-value=0.46 Score=33.16 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=33.7
Q ss_pred CEEEEEeCCCchh---h----HHHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCcc
Q psy11241 31 DIVIALSHAGVDL---D----QTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAY 103 (148)
Q Consensus 31 D~iI~lsH~g~~~---d----~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~ 103 (148)
..-|+++|..... + ..++. ..++|+++.||+|..... .. + ++.++.+|+.
T Consensus 81 ~~~i~~~H~~~~~~~~~~~~~~~~~~-~~~~~~~~~GH~H~~~~~----------------~~-~-----~~~~~~~Gs~ 137 (156)
T PF12850_consen 81 GFKILLSHGHPYDVQWDPAELREILS-RENVDLVLHGHTHRPQVF----------------KI-G-----GIHVINPGSI 137 (156)
T ss_dssp TEEEEEESSTSSSSTTTHHHHHHHHH-HTTSSEEEESSSSSEEEE----------------EE-T-----TEEEEEE-GS
T ss_pred CCeEEEECCCCcccccChhhhhhhhc-ccCCCEEEcCCcccceEE----------------EE-C-----CEEEEECCcC
Confidence 3567777865422 1 12222 368999999999998731 23 4 6888888887
Q ss_pred ccce
Q psy11241 104 SRYL 107 (148)
Q Consensus 104 g~~l 107 (148)
+..-
T Consensus 138 ~~~~ 141 (156)
T PF12850_consen 138 GGPR 141 (156)
T ss_dssp SS-S
T ss_pred CCCC
Confidence 7643
No 46
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=92.07 E-value=0.54 Score=36.00 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=22.6
Q ss_pred EEEEEeCCCchh----h---HHHHhhCCCccEEEeCCcccee
Q psy11241 32 IVIALSHAGVDL----D---QTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 32 ~iI~lsH~g~~~----d---~~la~~~~~iDvIlgGH~H~~~ 66 (148)
.+|+++|..... . .++.++. ++|+++.||+|...
T Consensus 166 ~~i~~~H~p~~~~~~~~~~~~~~~~~~-~v~~vl~GH~H~~~ 206 (232)
T cd07393 166 IKIVMLHYPPANENGDDSPISKLIEEY-GVDICVYGHLHGVG 206 (232)
T ss_pred CEEEEECCCCcCCCCCHHHHHHHHHHc-CCCEEEECCCCCCc
Confidence 578888854211 1 2343443 79999999999875
No 47
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=91.93 E-value=0.52 Score=36.96 Aligned_cols=57 Identities=23% Similarity=0.237 Sum_probs=44.0
Q ss_pred EEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH-HHHhhCCC-ccEEEeCCccceec
Q psy11241 9 RILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ-TVAKASKH-VSIVVGGHSHTFLY 67 (148)
Q Consensus 9 ~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~-~la~~~~~-iDvIlgGH~H~~~~ 67 (148)
.+.+|..++.+.+++++.+ .|+||+-.|.--..++ .+.--++| +.+++|-|+|....
T Consensus 124 ~~d~PF~~~d~l~~~~~~~--~~~iiVDFHAEtTSEK~a~g~yldGrvsavvGTHTHV~Ta 182 (266)
T COG1692 124 ALDNPFKAADKLLDEIKLG--TDLIIVDFHAETTSEKNAFGWYLDGRVSAVVGTHTHVPTA 182 (266)
T ss_pred ccCCHHHHHHHHHHhCccC--CceEEEEccccchhhhhhhheEEcCeEEEEEeccCccccc
Confidence 4679999999999998877 7999999998644332 22223455 89999999998764
No 48
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=91.90 E-value=0.58 Score=36.41 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=29.2
Q ss_pred HHHHHhhcCCCCEEEEEeCCCchh--------h---HHHHhhCCCccEEEeCCccceec
Q psy11241 20 EADRLVREDKVDIVIALSHAGVDL--------D---QTVAKASKHVSIVVGGHSHTFLY 67 (148)
Q Consensus 20 ~v~~lr~~~g~D~iI~lsH~g~~~--------d---~~la~~~~~iDvIlgGH~H~~~~ 67 (148)
+.++|++......+|+++|..... . .++.++. +++++|+||.|....
T Consensus 155 L~~~L~~~~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~ll~~~-~v~~vl~GH~H~~~~ 212 (256)
T cd07401 155 LEKELEKSTNSNYTIWFGHYPTSTIISPSAKSSSKFKDLLKKY-NVTAYLCGHLHPLGG 212 (256)
T ss_pred HHHHHHhcccCCeEEEEEcccchhccCCCcchhHHHHHHHHhc-CCcEEEeCCccCCCc
Confidence 334454332356789999966521 0 1233443 799999999998763
No 49
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=91.68 E-value=0.33 Score=36.06 Aligned_cols=38 Identities=26% Similarity=0.168 Sum_probs=26.0
Q ss_pred CCCEEEEEeCCCchhhH---------HHH-hhCCCccEEEeCCcccee
Q psy11241 29 KVDIVIALSHAGVDLDQ---------TVA-KASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 29 g~D~iI~lsH~g~~~d~---------~la-~~~~~iDvIlgGH~H~~~ 66 (148)
..+..|+++|....... .+. -.-.++|+++.||.|...
T Consensus 155 ~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~GH~H~~~ 202 (223)
T cd00840 155 PDDFNILLLHGGVAGAGPSDSERAPFVPEALLPAGFDYVALGHIHRPQ 202 (223)
T ss_pred CCCcEEEEEeeeeecCCCCcccccccCcHhhcCcCCCEEECCCcccCe
Confidence 46789999998753210 111 112679999999999876
No 50
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=91.31 E-value=1.4 Score=33.70 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.1
Q ss_pred HHhhCCCccEEEeCCcccee
Q psy11241 47 VAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 47 la~~~~~iDvIlgGH~H~~~ 66 (148)
+.++. +++++|.||.|...
T Consensus 204 li~~~-~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 204 LLVKY-EIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHh-CCCEEEECCccCCC
Confidence 34444 89999999999876
No 51
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=91.13 E-value=0.22 Score=39.07 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=23.0
Q ss_pred CCEEEEEeCCCchhhHHHHhhCCCccEEEeCCccce
Q psy11241 30 VDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTF 65 (148)
Q Consensus 30 ~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~ 65 (148)
-+..|+|+|....-+ .+ . -.++|++|+||+|--
T Consensus 182 ~~~~IlL~H~P~~~~-~~-~-~~~~dL~lsGHTHGG 214 (271)
T PRK11340 182 NLPRLVLAHNPDSKE-VM-R-DEPWDLMLCGHTHGG 214 (271)
T ss_pred CCCeEEEEcCCChhH-hh-c-cCCCCEEEeccccCC
Confidence 347999999764321 22 2 247999999999963
No 52
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=90.78 E-value=0.42 Score=34.49 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=24.8
Q ss_pred CCCEEEEEeCCCch-------------hh---HHHHhhCCCccEEEeCCcccee
Q psy11241 29 KVDIVIALSHAGVD-------------LD---QTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 29 g~D~iI~lsH~g~~-------------~d---~~la~~~~~iDvIlgGH~H~~~ 66 (148)
.-+..|+++|.... .. .+++++. .+++++.||.|...
T Consensus 122 ~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~-~~~~~l~GH~H~~~ 174 (188)
T cd07392 122 LAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEER-QPLLCICGHIHESR 174 (188)
T ss_pred CCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHh-CCcEEEEecccccc
Confidence 45678888885431 11 2444444 58999999999876
No 53
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=90.14 E-value=1.7 Score=33.49 Aligned_cols=68 Identities=19% Similarity=0.126 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCCCEEEEEeCCCc-------hhhH---HHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEec
Q psy11241 19 KEADRLVREDKVDIVIALSHAGV-------DLDQ---TVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTS 88 (148)
Q Consensus 19 ~~v~~lr~~~g~D~iI~lsH~g~-------~~d~---~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~ 88 (148)
...+.+++. .....|+++|..- .... ++.++. ...++++||-|... ..+ +
T Consensus 137 ~~l~~~~~~-~~~~~VLv~H~PP~g~g~~h~GS~alr~~I~~~-~P~l~i~GHih~~~-----------------~~~-g 196 (224)
T cd07388 137 YRLKALWEL-KDYRKVFLFHTPPYHKGLNEQGSHEVAHLIKTH-NPLVVLVGGKGQKH-----------------ELL-G 196 (224)
T ss_pred HHHHHHHhC-CCCCeEEEECCCCCCCCCCccCHHHHHHHHHHh-CCCEEEEcCCceeE-----------------EEe-C
Confidence 344455543 3557788888532 1123 333333 36699999999433 134 5
Q ss_pred CCCCceEEEEecCc--cccceeEEEE
Q psy11241 89 SVDNRQVLVVQAAA--YSRYLGLIHL 112 (148)
Q Consensus 89 ~~~g~~~~vvq~g~--~g~~lg~l~l 112 (148)
+|+|+++|. .|+| ..+++
T Consensus 197 -----~t~vvNpg~~~~g~~-a~i~~ 216 (224)
T cd07388 197 -----ASWVVVPGDLSEGRY-ALLDL 216 (224)
T ss_pred -----CEEEECCCcccCCcE-EEEEe
Confidence 799999888 4544 34554
No 54
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=89.56 E-value=7.3 Score=29.32 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=17.2
Q ss_pred HHHhhCCCccEEEeCCccceec
Q psy11241 46 TVAKASKHVSIVVGGHSHTFLY 67 (148)
Q Consensus 46 ~la~~~~~iDvIlgGH~H~~~~ 67 (148)
+|.++.++|+++++||.|....
T Consensus 142 ~ll~~~~~V~~v~~GH~H~~~~ 163 (214)
T cd07399 142 KLVKKNDNVFMVLSGHVHGAGR 163 (214)
T ss_pred HHHhCCCCEEEEEccccCCCce
Confidence 3445668999999999997763
No 55
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=89.20 E-value=0.64 Score=32.25 Aligned_cols=14 Identities=29% Similarity=0.226 Sum_probs=12.5
Q ss_pred CccEEEeCCcccee
Q psy11241 53 HVSIVVGGHSHTFL 66 (148)
Q Consensus 53 ~iDvIlgGH~H~~~ 66 (148)
+.|+++.||+|...
T Consensus 104 ~~~~~i~GH~H~~~ 117 (135)
T cd07379 104 RPKLHVFGHIHEGY 117 (135)
T ss_pred CCcEEEEcCcCCcC
Confidence 57999999999886
No 56
>PLN02533 probable purple acid phosphatase
Probab=88.90 E-value=0.94 Score=38.10 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCchh----------hH-------HHHhhCCCccEEEeCCcccee
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDL----------DQ-------TVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~----------d~-------~la~~~~~iDvIlgGH~H~~~ 66 (148)
+..+.+++.+++.+.+ ....+|++.|..+.. .. .|..+ .++|++|+||.|.+.
T Consensus 266 ~Q~~WLe~dL~~~~r~-~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~-~~VdlvlsGH~H~Ye 335 (427)
T PLN02533 266 EQYQWLENNLKKIDRK-TTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYK-ARVDLVFAGHVHAYE 335 (427)
T ss_pred HHHHHHHHHHHhhccc-CCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHH-hCCcEEEecceeccc
Confidence 3344555555544333 467899999965421 01 12233 589999999999754
No 57
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=88.70 E-value=0.96 Score=35.79 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEE---eCCCchhhHHHHhhC--CCccEEEeCCcccee
Q psy11241 14 ITSVNKEADRLVREDKVDIVIAL---SHAGVDLDQTVAKAS--KHVSIVVGGHSHTFL 66 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~l---sH~g~~~d~~la~~~--~~iDvIlgGH~H~~~ 66 (148)
.+.++..+++||++.++|++|+- +..|..-..+.++.+ -|+|+|-.| .|.+=
T Consensus 15 r~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~G-NH~~D 71 (266)
T TIGR00282 15 RKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMG-NHTWF 71 (266)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEcc-chhcc
Confidence 57788999999998789999984 223433456676666 489999998 88764
No 58
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=88.47 E-value=0.94 Score=35.67 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCchh----------h--HHHHhhCCC-ccEEEeCCccceec
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHAGVDL----------D--QTVAKASKH-VSIVVGGHSHTFLY 67 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~----------d--~~la~~~~~-iDvIlgGH~H~~~~ 67 (148)
..+.+++.+++.+++ + ..|++++|..... + .+|.++.+. |..++.||+|....
T Consensus 198 Ql~WL~~~L~~a~~~-~-~~v~I~~HiPp~~~~~~~~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~ 263 (296)
T cd00842 198 QLQWLEDELQEAEQA-G-EKVWIIGHIPPGVNSYDTLENWSERYLQIINRYSDTIAGQFFGHTHRDEF 263 (296)
T ss_pred HHHHHHHHHHHHHHC-C-CeEEEEeccCCCCcccccchHHHHHHHHHHHHHHHhhheeeecccccceE
Confidence 455666666666555 3 4567778864221 1 245555554 77899999998653
No 59
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=88.32 E-value=0.3 Score=38.92 Aligned_cols=33 Identities=27% Similarity=0.137 Sum_probs=22.9
Q ss_pred CEEEEEeCCCchhhHHHHhhCCCccEEEeCCcccee
Q psy11241 31 DIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 31 D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~ 66 (148)
...|+|+|.... ..-++. .++|++++||+|...
T Consensus 193 ~~~IlL~H~P~~--~~~~~~-~~~dLvLSGHTHGGQ 225 (284)
T COG1408 193 LPGILLSHEPDI--ILQLRL-YGVDLVLSGHTHGGQ 225 (284)
T ss_pred ccceEeccCCce--ehhhcc-CcceEEEeccccCCe
Confidence 368999998633 112222 379999999999655
No 60
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=87.52 E-value=1.2 Score=30.88 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhc--------CCCCEEEEEeCCCchh------h--------HHHHhhCCCccEEEeCCccceec
Q psy11241 14 ITSVNKEADRLVRE--------DKVDIVIALSHAGVDL------D--------QTVAKASKHVSIVVGGHSHTFLY 67 (148)
Q Consensus 14 ~~~~~~~v~~lr~~--------~g~D~iI~lsH~g~~~------d--------~~la~~~~~iDvIlgGH~H~~~~ 67 (148)
...+.++.++++.. +.-|. |+++|-.... + .+++++ .++++++.||.|....
T Consensus 54 ~~~~~~~~~~l~~~~~~~~~v~GNHD~-iv~~Hhp~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~l~GH~H~~~~ 127 (144)
T cd07400 54 FEEAREFLDALPAPLEPVLVVPGNHDV-IVVLHHPLVPPPGSGRERLLDAGDALKLLAE-AGVDLVLHGHKHVPYV 127 (144)
T ss_pred HHHHHHHHHHccccCCcEEEeCCCCeE-EEEecCCCCCCCccccccCCCHHHHHHHHHH-cCCCEEEECCCCCcCe
Confidence 34566677777662 13444 6677754321 1 223333 4799999999998763
No 61
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=86.74 E-value=0.95 Score=33.64 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=13.5
Q ss_pred CCccEEEeCCcccee
Q psy11241 52 KHVSIVVGGHSHTFL 66 (148)
Q Consensus 52 ~~iDvIlgGH~H~~~ 66 (148)
.++|+++.||+|...
T Consensus 188 ~~~~~~i~GH~H~~~ 202 (217)
T cd07398 188 KGVDGVICGHTHRPA 202 (217)
T ss_pred cCCCEEEECCCCCCC
Confidence 689999999999875
No 62
>KOG3325|consensus
Probab=86.50 E-value=1.4 Score=32.16 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=15.7
Q ss_pred HHhhCCCccEEEeCCccceec
Q psy11241 47 VAKASKHVSIVVGGHSHTFLY 67 (148)
Q Consensus 47 la~~~~~iDvIlgGH~H~~~~ 67 (148)
||+++ ++|+++.||+|.+..
T Consensus 102 LaRql-dvDILl~G~Th~f~A 121 (183)
T KOG3325|consen 102 LARQL-DVDILLTGHTHKFEA 121 (183)
T ss_pred HHHhc-CCcEEEeCCceeEEE
Confidence 44454 799999999998763
No 63
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=85.78 E-value=0.58 Score=30.91 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=28.8
Q ss_pred HHhhcCCCCEE-------EEEeCCCchhhH------------HHHh--hCCCccEEEeCCccceec
Q psy11241 23 RLVREDKVDIV-------IALSHAGVDLDQ------------TVAK--ASKHVSIVVGGHSHTFLY 67 (148)
Q Consensus 23 ~lr~~~g~D~i-------I~lsH~g~~~d~------------~la~--~~~~iDvIlgGH~H~~~~ 67 (148)
.++.. ++.++ |+++|.+..... .+.. ...+++++++||+|....
T Consensus 53 ~~~~~-~~~~~~~~GNHDi~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~ 117 (131)
T cd00838 53 LLLLL-GIPVYVVPGNHDILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYER 117 (131)
T ss_pred HhhcC-CCCEEEeCCCceEEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeecccc
Confidence 34444 56677 899998765321 1111 236899999999998773
No 64
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=85.49 E-value=1.7 Score=36.39 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=26.9
Q ss_pred CCCEEEEEeCCCchh------hHH-------HHhhCCCccEEEeCCcccee
Q psy11241 29 KVDIVIALSHAGVDL------DQT-------VAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 29 g~D~iI~lsH~g~~~------d~~-------la~~~~~iDvIlgGH~H~~~ 66 (148)
.+|-+|++.|-.+.. +.. |.++ .++|+.+.||.|...
T Consensus 212 ~a~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~k-y~VdlYisGHDH~lq 261 (394)
T PTZ00422 212 IADYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKD-AQVDLYISGYDRNME 261 (394)
T ss_pred CCCeEEEEecCceeecCCCCCCHHHHHHHHHHHHH-cCcCEEEEccccceE
Confidence 489999999976542 222 2333 479999999999765
No 65
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.30 E-value=2.6 Score=35.70 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCcccee
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~ 66 (148)
....+...+.+++.. ++|++|+++-+-.....++.+..|++|+|+|-|+...+
T Consensus 55 a~~k~~~~i~~~~~~-~p~~~iiVtGC~aq~~~~i~~~~p~vd~v~G~~~~~~~ 107 (437)
T COG0621 55 AEQKVRSAIGELKKL-KPDAKIIVTGCLAQAEEEILERAPEVDIVLGPQNKERL 107 (437)
T ss_pred HHHHHHHHHHHHHHh-CCCCEEEEeCCccccCHHHHhhCCCceEEECCccHHHH
Confidence 445667777888887 79999999987666567888899999999998877654
No 66
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=83.92 E-value=2.9 Score=31.58 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=19.9
Q ss_pred EEEeCCCchhhHHHHhhCCCccEEEeCCcccee
Q psy11241 34 IALSHAGVDLDQTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 34 I~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~ 66 (148)
|+|+|....- +..-..+|++|+||+|...
T Consensus 129 ilL~H~P~~~----~~~~~~~dl~lSGHtHgGq 157 (193)
T cd08164 129 ILLTHVPLYK----IFLEGKPGLILTGHDHEGC 157 (193)
T ss_pred EEEEccccee----ccccCCCCEEEeCccCCCe
Confidence 8888865321 1112478999999999744
No 67
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=83.91 E-value=1.9 Score=37.17 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=31.3
Q ss_pred HHHhhcCCCCEEEEEeCCCchhh---HHHHhhCCCccEEEeCCccce
Q psy11241 22 DRLVREDKVDIVIALSHAGVDLD---QTVAKASKHVSIVVGGHSHTF 65 (148)
Q Consensus 22 ~~lr~~~g~D~iI~lsH~g~~~d---~~la~~~~~iDvIlgGH~H~~ 65 (148)
+++|.+ +++.+|+++-+=.... .++.+.+|++|+|+|.|.-..
T Consensus 130 ~~~k~~-~p~~~i~v~GCmaq~~~~~~~~~~~~p~vd~v~g~~~~~~ 175 (509)
T PRK14327 130 KHLKRE-NPDLLIGVCGCMSQEESVVNKILKKYQHVDMIFGTHNIHR 175 (509)
T ss_pred HHHHhh-CCCCEEEEEcchhcCcCchHHHHhcCCCCCEEECCCCHHH
Confidence 445555 7898898888743333 367788999999999886643
No 68
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=83.48 E-value=2 Score=33.81 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCC---CchhhHHHHhhC--CCccEEEeCCcccee
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHA---GVDLDQTVAKAS--KHVSIVVGGHSHTFL 66 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~---g~~~d~~la~~~--~~iDvIlgGH~H~~~ 66 (148)
-..++++.+++||++.++|+||+-.-. |..-.++.++++ -|||+|=+| .|.+-
T Consensus 11 Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDviT~G-NH~wd 68 (253)
T PF13277_consen 11 GRRAVKEHLPELKEEYGIDFVIANGENAAGGFGITPKIAEELFKAGVDVITMG-NHIWD 68 (253)
T ss_dssp HHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SEEE---TTTTS
T ss_pred HHHHHHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHHHhcCCCEEecC-ccccc
Confidence 357889999999998889999998542 344445666655 589988765 45443
No 69
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=83.33 E-value=3.5 Score=27.51 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCchhh-HHHHhhCCCccEEEe
Q psy11241 16 SVNKEADRLVREDKVDIVIALSHAGVDLD-QTVAKASKHVSIVVG 59 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH~g~~~d-~~la~~~~~iDvIlg 59 (148)
.+...+.+++...+.+..|+++-.--+.+ .+|.+..|.+|+|+|
T Consensus 54 k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 54 KSRNRIRKLKKLKKPGAKIVVTGCMAQRYGEELKKEFPEVDLVVG 98 (98)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCccccChHHHHhhCCCeEEEeC
Confidence 44445555555412666677766543332 346566677777775
No 70
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=81.80 E-value=6.3 Score=30.09 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=30.0
Q ss_pred CCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCc-cccceeEEEEEEecCCCEEEEe
Q psy11241 52 KHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAA-YSRYLGLIHLQYNDKGNIVSWR 124 (148)
Q Consensus 52 ~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~-~g~~lg~l~l~~~~~g~v~~~~ 124 (148)
.+.++++.||+|... +... + +++.+.+|+ +|-.|+-+.+ +++.+..+.
T Consensus 180 ~~~~~vv~GHt~~~~----------------~~~~-~-----~~i~IDtGav~gG~Lt~l~~---~~~~~~~~~ 228 (234)
T cd07423 180 RGDALVVYGHTPVPE----------------PRWL-N-----NTINIDTGCVFGGKLTALRY---PEREIVSVP 228 (234)
T ss_pred CCCeEEEECCCCCcc----------------ceEe-C-----CEEEEECCCCCCCcceEEEC---CCCcEEEee
Confidence 345899999999764 2333 4 577778875 4556666665 344444443
No 71
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=81.03 E-value=7.7 Score=24.94 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEe
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG 59 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlg 59 (148)
|....+.+++...++- |+|-++++.|..-+...+++++.+++-++..
T Consensus 2 ne~~~L~~wl~~~~~l-G~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~ 48 (97)
T PF13704_consen 2 NEADYLPEWLAHHLAL-GVDHIYIYDDGSTDGTREILRALPGVGIIRW 48 (97)
T ss_pred ChHHHHHHHHHHHHHc-CCCEEEEEECCCCccHHHHHHhCCCcEEEEe
Confidence 5567788899999887 9999999999887777888888888765543
No 72
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=78.70 E-value=5.8 Score=31.15 Aligned_cols=52 Identities=29% Similarity=0.409 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEE----eCCCchhhHHHHhhC--CCccEEEeCCcccee
Q psy11241 13 EITSVNKEADRLVREDKVDIVIAL----SHAGVDLDQTVAKAS--KHVSIVVGGHSHTFL 66 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~l----sH~g~~~d~~la~~~--~~iDvIlgGH~H~~~ 66 (148)
-...+++.+++||++.++|++|+- +| |..-..+.++.+ -|+|++-.| .|.+=
T Consensus 13 G~~~~~~~l~~lk~~~~~D~vi~NgEn~~g-g~gl~~~~~~~L~~~G~D~iTlG-NH~fD 70 (255)
T cd07382 13 GRKAVKEHLPKLKKEYKIDFVIANGENAAG-GKGITPKIAKELLSAGVDVITMG-NHTWD 70 (255)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCccccC-CCCCCHHHHHHHHhcCCCEEEec-ccccC
Confidence 356888999999998789999983 34 222235555544 589999887 77543
No 73
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=78.42 E-value=1.8 Score=31.35 Aligned_cols=32 Identities=22% Similarity=-0.012 Sum_probs=20.6
Q ss_pred EEEEEeCCCchhhHHHHhhCCCccEEEeCCccceec
Q psy11241 32 IVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFLY 67 (148)
Q Consensus 32 ~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~~ 67 (148)
.-++++|...... .. ..+.|+++.||+|....
T Consensus 108 ~~i~l~H~~~~~~--~~--~~~~d~vi~GHtH~~~~ 139 (168)
T cd07390 108 RRVYLSHYPILEW--NG--LDRGSWNLHGHIHSNSP 139 (168)
T ss_pred EEEEEEeCCcccC--CC--CCCCeEEEEeeeCCCCC
Confidence 5677777533211 10 14679999999998764
No 74
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=76.73 E-value=7.1 Score=29.70 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=13.2
Q ss_pred CCccEEEeCCcccee
Q psy11241 52 KHVSIVVGGHSHTFL 66 (148)
Q Consensus 52 ~~iDvIlgGH~H~~~ 66 (148)
.++|+++.||+|...
T Consensus 184 ~~~~~~i~GHtH~~~ 198 (231)
T TIGR01854 184 YGVDRLIHGHTHRPA 198 (231)
T ss_pred cCCCEEEECCccCcc
Confidence 378999999999876
No 75
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=75.68 E-value=7.3 Score=32.37 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCchhh-HHHHhhCCCccEEEeCCcc
Q psy11241 16 SVNKEADRLVREDKVDIVIALSHAGVDLD-QTVAKASKHVSIVVGGHSH 63 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH~g~~~d-~~la~~~~~iDvIlgGH~H 63 (148)
.+.+.+.++|+. +++..|+++-.-.... .+++ +.|++|+|++|+.-
T Consensus 51 ~~~~~i~~~k~~-~p~~~vvvgGc~a~~~~ee~~-~~~~vD~vv~~e~~ 97 (414)
T TIGR01579 51 KARRAIRRARRQ-NPTAKIIVTGCYAQSNPKELA-DLKDVDLVLGNKEK 97 (414)
T ss_pred HHHHHHHHHHhh-CCCcEEEEECCccccCHHHHh-cCCCCcEEECCCCH
Confidence 466788888877 7777777755433322 2343 57999999999874
No 76
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=75.22 E-value=3.2 Score=30.33 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=18.6
Q ss_pred EEEeCCCchhhHHHHhhCCCccEEEeCCcccee
Q psy11241 34 IALSHAGVDLDQTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 34 I~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~~ 66 (148)
|+|+|.... .+.++ .++|++++||+|...
T Consensus 119 i~l~H~p~~---~~~~~-~~~~~~lsGH~H~~~ 147 (171)
T cd07384 119 ILLTHIPLY---RLLDT-IKPVLILSGHDHDQC 147 (171)
T ss_pred eeEECCccH---HHHhc-cCceEEEeCcccCCe
Confidence 666665432 12222 468999999999775
No 77
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=73.37 E-value=12 Score=25.14 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCchhh--HHHHh----hCC-CccEEEeCCc
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVDLD--QTVAK----ASK-HVSIVVGGHS 62 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d--~~la~----~~~-~iDvIlgGH~ 62 (148)
-..++.++.+.+. ++|+|.+-+..+.... .++++ ..+ ++-+++||.-
T Consensus 37 ~~~~~l~~~~~~~-~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 37 VPPEEIVEAAKEE-DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred CCHHHHHHHHHHc-CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCC
Confidence 3445566666665 6887766555443321 23322 235 6778888863
No 78
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=72.74 E-value=7.9 Score=30.31 Aligned_cols=62 Identities=24% Similarity=0.171 Sum_probs=33.0
Q ss_pred HHHHhhcCCCCEEEEEeCCCch-----------hhHHHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecC
Q psy11241 21 ADRLVREDKVDIVIALSHAGVD-----------LDQTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSS 89 (148)
Q Consensus 21 v~~lr~~~g~D~iI~lsH~g~~-----------~d~~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~ 89 (148)
.+.++.- +.---|+|.|..-+ .-..|.+.. ..+++++||.|..... ..+ +
T Consensus 165 lk~l~el-k~~r~IlLfhtpPd~~kg~~h~GS~~V~dlIk~~-~P~ivl~Ghihe~~~~---------------e~l-G- 225 (255)
T PF14582_consen 165 LKFLREL-KDYRKILLFHTPPDLHKGLIHVGSAAVRDLIKTY-NPDIVLCGHIHESHGK---------------ESL-G- 225 (255)
T ss_dssp HGGGGGC-TSSEEEEEESS-BTBCTCTBTTSBHHHHHHHHHH---SEEEE-SSS-EE-----------------EEE-T-
T ss_pred HHHHHhc-ccccEEEEEecCCccCCCcccccHHHHHHHHHhc-CCcEEEecccccchhh---------------HHh-C-
Confidence 3444443 23356777887541 113455554 4678999999988731 245 5
Q ss_pred CCCceEEEEecCcccc
Q psy11241 90 VDNRQVLVVQAAAYSR 105 (148)
Q Consensus 90 ~~g~~~~vvq~g~~g~ 105 (148)
.|+||.+|+...
T Consensus 226 ----~TlVVNPGsL~~ 237 (255)
T PF14582_consen 226 ----KTLVVNPGSLAE 237 (255)
T ss_dssp ----TEEEEE--BGGG
T ss_pred ----CEEEecCccccc
Confidence 799999998765
No 79
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=72.33 E-value=5.6 Score=28.30 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=13.6
Q ss_pred CCccEEEeCCcccee
Q psy11241 52 KHVSIVVGGHSHTFL 66 (148)
Q Consensus 52 ~~iDvIlgGH~H~~~ 66 (148)
.+++++++||.|...
T Consensus 136 ~~v~~~i~GH~H~~~ 150 (166)
T cd07404 136 DPIDLWIHGHTHFNF 150 (166)
T ss_pred cCCCEEEECCccccc
Confidence 689999999999886
No 80
>KOG2679|consensus
Probab=71.26 E-value=10 Score=30.54 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=30.7
Q ss_pred HHHhhcCCCCEEEEEeCCCchh------hHHHHhh------CCCccEEEeCCcccee
Q psy11241 22 DRLVREDKVDIVIALSHAGVDL------DQTVAKA------SKHVSIVVGGHSHTFL 66 (148)
Q Consensus 22 ~~lr~~~g~D~iI~lsH~g~~~------d~~la~~------~~~iDvIlgGH~H~~~ 66 (148)
..||+. .++-.|+..|-++-. ..+|-++ -.++|+-+.||+|-..
T Consensus 201 ~~L~~S-~a~wkiVvGHh~i~S~~~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQ 256 (336)
T KOG2679|consen 201 VALKAS-RAKWKIVVGHHPIKSAGHHGPTKELEKQLLPILEANGVDLYINGHDHCLQ 256 (336)
T ss_pred HHHHHh-hcceEEEecccceehhhccCChHHHHHHHHHHHHhcCCcEEEecchhhhh
Confidence 345665 689999999987642 2222222 2689999999999765
No 81
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=68.98 E-value=14 Score=31.89 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=33.0
Q ss_pred HHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCccc---cceeEEEEEEecCCCE
Q psy11241 47 VAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYS---RYLGLIHLQYNDKGNI 120 (148)
Q Consensus 47 la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~g---~~lg~l~l~~~~~g~v 120 (148)
+.++.|.+=++|+||.|..+... +++ ..+..|+ ++-|-+++.+.- +..=.++|..+.+|.|
T Consensus 393 LL~~hPnVla~LsGHvHrn~v~a-~~~----p~~~~pe--------~gFWeveTaSl~DfPQq~R~~Ei~~n~d~tv 456 (492)
T TIGR03768 393 TLQKYPNLLMWIAGHRHLNTVKA-FPS----PDPARPE--------YGFWQVETASLRDFPQQFRTFEIYLNSDDTV 456 (492)
T ss_pred HHhcCCCeEEEEcCCcccccccc-cCC----CCCCCCc--------CceEEEeehhhccchhhceEEEEEeCCCCeE
Confidence 33455788889999999776431 111 0000010 156666655432 2334577777666765
No 82
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=68.68 E-value=9 Score=28.95 Aligned_cols=14 Identities=14% Similarity=-0.095 Sum_probs=11.8
Q ss_pred CccEEEeCCcccee
Q psy11241 53 HVSIVVGGHSHTFL 66 (148)
Q Consensus 53 ~iDvIlgGH~H~~~ 66 (148)
+.|.|+.||+|...
T Consensus 179 ~~~~vv~GHT~~~~ 192 (218)
T PRK11439 179 GADHFWFGHTPLRH 192 (218)
T ss_pred CCCEEEECCccCCC
Confidence 66899999999765
No 83
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=68.54 E-value=21 Score=24.33 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=9.0
Q ss_pred HHHHHHhhcCCCCEEEEEe
Q psy11241 19 KEADRLVREDKVDIVIALS 37 (148)
Q Consensus 19 ~~v~~lr~~~g~D~iI~ls 37 (148)
+.+..+++. ++|+|.+-+
T Consensus 41 ~~~~~a~~~-~~d~V~iS~ 58 (122)
T cd02071 41 EIVEAAIQE-DVDVIGLSS 58 (122)
T ss_pred HHHHHHHHc-CCCEEEEcc
Confidence 344444444 566665543
No 84
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=68.35 E-value=12 Score=23.89 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=23.9
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSH 38 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH 38 (148)
.|+-++++++.++.|+. |+|.||.+.=
T Consensus 25 ~d~d~Al~eM~e~A~~l-GAnAVVGvr~ 51 (74)
T TIGR03884 25 DNVDEIVENLREKVKAK-GGMGLIAFRI 51 (74)
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEEE
Confidence 38889999999999998 9999999864
No 85
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=67.97 E-value=6.6 Score=30.03 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=24.3
Q ss_pred CccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCccccce
Q psy11241 53 HVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYL 107 (148)
Q Consensus 53 ~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~g~~l 107 (148)
..|+++.||+|.... ..+ + ++.++++|++.+.-
T Consensus 191 ~p~vii~Gh~h~~~~----------------~~~-~-----~~~~vn~Gsf~~~~ 223 (243)
T cd07386 191 VPDILHTGHVHVYGV----------------GVY-R-----GVLLVNSGTWQSQT 223 (243)
T ss_pred CCCEEEECCCCchHh----------------EEE-C-----CEEEEECCCCcCCC
Confidence 358999999998652 123 4 69999999987653
No 86
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=66.64 E-value=13 Score=31.22 Aligned_cols=40 Identities=10% Similarity=0.247 Sum_probs=25.9
Q ss_pred HHHhhcCCCCEEEEEeCCCch-hhHHHHhhCCCccEEEeCCc
Q psy11241 22 DRLVREDKVDIVIALSHAGVD-LDQTVAKASKHVSIVVGGHS 62 (148)
Q Consensus 22 ~~lr~~~g~D~iI~lsH~g~~-~d~~la~~~~~iDvIlgGH~ 62 (148)
+++|+. .+++.|+++-.--. .-.++++..|++|+|++|..
T Consensus 64 ~~~k~~-~p~~~ivv~Gc~a~~~~e~~~~~~p~vD~vv~~~~ 104 (437)
T PRK14331 64 KKIKEK-NPNALIGVCGCLAQRAGYEIVQKAPFIDIVFGTFN 104 (437)
T ss_pred HHHHHh-CCCCEEEEEcchhcCChHHHHhcCCCCcEEECCCC
Confidence 555665 57877777543111 12356677899999998764
No 87
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=66.26 E-value=19 Score=31.15 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=34.2
Q ss_pred HHHhhCCCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecC-CCCceEEEEecCcccc---ceeEEEEEEecCCCE
Q psy11241 46 TVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSS-VDNRQVLVVQAAAYSR---YLGLIHLQYNDKGNI 120 (148)
Q Consensus 46 ~la~~~~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~-~~g~~~~vvq~g~~g~---~lg~l~l~~~~~g~v 120 (148)
++.+..++|-++|+||.|...... +.. | ++ .-+++.+=+.+++.-. -.=.++|..+.+|.+
T Consensus 373 dLL~~ypnV~aVfsGHvH~n~i~~-~~~---------~----~~~~p~~gfweI~TaSlvdfPq~~Ri~Ei~~n~dgt~ 437 (496)
T TIGR03767 373 SLLLEHPNVLAWVNGHTHSNKITA-HRR---------V----EGVGKDKGFWEINTASHIDFPQQGRIIELADNQDGTV 437 (496)
T ss_pred HHHhcCCCceEEEECCcCCCcccc-ccC---------C----CCCCCcCCeEEEeccccccCCCCceEEEEEeCCCCcE
Confidence 344556789899999999876321 000 0 00 0112566666666533 233567776666765
No 88
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=65.58 E-value=20 Score=23.83 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=35.2
Q ss_pred CeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchh--hHHHHh----hCCCccEEEeCCccce
Q psy11241 7 NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDL--DQTVAK----ASKHVSIVVGGHSHTF 65 (148)
Q Consensus 7 ~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~--d~~la~----~~~~iDvIlgGH~H~~ 65 (148)
.+.+.|.-....+.++.+++. ++|+|.+-++..... ..++++ ..|++=+++||..-+.
T Consensus 30 ~v~~~d~~~~~~~l~~~~~~~-~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~ 93 (121)
T PF02310_consen 30 EVDILDANVPPEELVEALRAE-RPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATA 93 (121)
T ss_dssp EEEEEESSB-HHHHHHHHHHT-TCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGH
T ss_pred eEEEECCCCCHHHHHHHHhcC-CCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhc
Confidence 345555555557777888877 799977665555432 334443 3478878888754333
No 89
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=65.26 E-value=11 Score=25.19 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=35.3
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH-HHHhhCCCccEEEeCC
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ-TVAKASKHVSIVVGGH 61 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~-~la~~~~~iDvIlgGH 61 (148)
......+.+.++.+|+. ..++.|++.-.....+. .+.+..+++|.++-|-
T Consensus 62 ~~~~~~~~~l~~~~k~~-~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 62 TPNLPEAKRLARAIKER-NPNIPIVVGGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp STHHHHHHHHHHHHHTT-CTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred cCcHHHHHHHHHHHHhc-CCCCEEEEECCchhcChHHHhccCcCcceecCCC
Confidence 56778888999998887 78888888665544333 3333338999988764
No 90
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=65.13 E-value=17 Score=28.17 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=18.9
Q ss_pred EEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCc
Q psy11241 56 IVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAA 102 (148)
Q Consensus 56 vIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~ 102 (148)
+.+.||-|+.-.. ..+ + +|+++++|.
T Consensus 178 l~i~GHIHEs~G~---------------d~i-G-----~TivVNPG~ 203 (226)
T COG2129 178 LGLHGHIHESRGI---------------DKI-G-----NTIVVNPGP 203 (226)
T ss_pred eEEEeeecccccc---------------ccc-C-----CeEEECCCC
Confidence 8999999974310 123 3 799999998
No 91
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=64.05 E-value=5.8 Score=29.25 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=14.4
Q ss_pred hCCCccEEEeCCcccee
Q psy11241 50 ASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 50 ~~~~iDvIlgGH~H~~~ 66 (148)
+.+++++++.||.|...
T Consensus 161 ~~~~v~~v~~GH~H~~~ 177 (199)
T cd07383 161 ERGDVKGVFCGHDHGND 177 (199)
T ss_pred HcCCeEEEEeCCCCCcc
Confidence 45889999999999853
No 92
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=64.05 E-value=20 Score=30.13 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=27.8
Q ss_pred HHHHhhcCCCCEEEEEeCCCchh---hHHHHhhCCCccEEEeCCcc
Q psy11241 21 ADRLVREDKVDIVIALSHAGVDL---DQTVAKASKHVSIVVGGHSH 63 (148)
Q Consensus 21 v~~lr~~~g~D~iI~lsH~g~~~---d~~la~~~~~iDvIlgGH~H 63 (148)
+.++|.+ +.+..|+++-.-... ..++++..|++|+|+|+..-
T Consensus 64 ~~~~~~~-~~~~~vvv~GC~a~~~~~~~~~~~~~~~vd~v~~~~~~ 108 (439)
T PRK14328 64 LKKLKEK-NPNLIIGVCGCMMQQKGMAEKIKKKFPFVDIIFGTHNI 108 (439)
T ss_pred HHHHHhh-CCCCEEEEECchhcccccHHHHHhhCCCceEEECCCCH
Confidence 4555555 567666666653332 25677778999999988654
No 93
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=63.71 E-value=21 Score=29.96 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=26.1
Q ss_pred HHHhhcCCCCEEEEEeCCCchh-hHHHHhhCCCccEEEeCCcc
Q psy11241 22 DRLVREDKVDIVIALSHAGVDL-DQTVAKASKHVSIVVGGHSH 63 (148)
Q Consensus 22 ~~lr~~~g~D~iI~lsH~g~~~-d~~la~~~~~iDvIlgGH~H 63 (148)
.++|.+ +.+..|+++-.--.. -.++++..|++|+|+|...=
T Consensus 64 ~~~k~~-~~~~~ivv~GC~a~~~~~~~~~~~~~vd~v~g~~~~ 105 (438)
T TIGR01574 64 KKLKKK-NPDLIIGVCGCMASHLGNEIFQRAPYVDFVFGTRNI 105 (438)
T ss_pred HHHHhh-CCCcEEEEeCccccccHHHHHhcCCCCcEEECCCCH
Confidence 455555 567767666553333 34666678999999976543
No 94
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=63.64 E-value=9 Score=32.57 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=33.0
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS 51 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~ 51 (148)
.||++.+++.+++.|.. ++|+||+=|-.....|.+|.+++
T Consensus 165 ~~Pv~Iak~al~~ak~~-~~DvvIvDTAGRl~ide~Lm~El 204 (451)
T COG0541 165 KDPVEIAKAALEKAKEE-GYDVVIVDTAGRLHIDEELMDEL 204 (451)
T ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEeCCCcccccHHHHHHH
Confidence 47999999999999998 89999999887776676665544
No 95
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=62.13 E-value=22 Score=30.02 Aligned_cols=47 Identities=4% Similarity=0.066 Sum_probs=30.5
Q ss_pred HHHHHHH---HHhhcCCCCEEEEEeCCCch-hhHHHHhhCCCccEEEeCCcc
Q psy11241 16 SVNKEAD---RLVREDKVDIVIALSHAGVD-LDQTVAKASKHVSIVVGGHSH 63 (148)
Q Consensus 16 ~~~~~v~---~lr~~~g~D~iI~lsH~g~~-~d~~la~~~~~iDvIlgGH~H 63 (148)
.+.+.+. ++|++ +++.+|+++-+-.. .-.++++.+|++|+++|++.-
T Consensus 61 k~~~~i~~~~~~k~~-~~~~~ivv~GC~a~~~~~e~~~~~p~vd~v~g~~~~ 111 (445)
T PRK14340 61 RIGHYLQHLKGAKRR-RKGLLVGVLGCVPQYEREEMFSMFPVIDFLAGPDTY 111 (445)
T ss_pred HHHHHHHHHHHHhhc-CCCCEEEEeCcccccchHHHHhhCCCCcEEECCCCH
Confidence 4444433 44555 68888888765322 224677778999999988763
No 96
>KOG0780|consensus
Probab=61.96 E-value=9.8 Score=32.17 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=32.3
Q ss_pred EEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHh
Q psy11241 9 RILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAK 49 (148)
Q Consensus 9 ~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~ 49 (148)
+-.||+..+.+-+++.|++ +||+||+=|-....++..|.+
T Consensus 164 te~dpv~ia~egv~~fKke-~fdvIIvDTSGRh~qe~sLfe 203 (483)
T KOG0780|consen 164 TEADPVKIASEGVDRFKKE-NFDVIIVDTSGRHKQEASLFE 203 (483)
T ss_pred cccchHHHHHHHHHHHHhc-CCcEEEEeCCCchhhhHHHHH
Confidence 4468999999999999998 999999998877666554433
No 97
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=61.77 E-value=14 Score=28.01 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=31.2
Q ss_pred HHHHH-HHHHHhhcCCCCEEEEEeCCCchhh-------HHHHhhCCCccEEEeCCcccee
Q psy11241 15 TSVNK-EADRLVREDKVDIVIALSHAGVDLD-------QTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 15 ~~~~~-~v~~lr~~~g~D~iI~lsH~g~~~d-------~~la~~~~~iDvIlgGH~H~~~ 66 (148)
..++. ..++|++ +++-+|+|+|..--.+ .++.++ ..++..+-||-|..-
T Consensus 144 ~RLrlsa~a~l~k--~~~~fivM~HYPP~s~~~t~~~~sevlee-~rv~~~lyGHlHgv~ 200 (230)
T COG1768 144 GRLRLSADAALPK--GVSKFIVMTHYPPFSDDGTPGPFSEVLEE-GRVSKCLYGHLHGVP 200 (230)
T ss_pred HHHHHHHHHhccc--CcCeEEEEEecCCCCCCCCCcchHHHHhh-cceeeEEeeeccCCC
Confidence 33443 3344443 5999999999753222 244442 349999999999764
No 98
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=61.49 E-value=69 Score=24.35 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=15.1
Q ss_pred HHHhhCCCccEEEeCCcccee
Q psy11241 46 TVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 46 ~la~~~~~iDvIlgGH~H~~~ 66 (148)
+++++. ++|+++.||+|...
T Consensus 181 ~~~~~~-~~~~~i~GH~H~~~ 200 (241)
T PRK05340 181 ALMEKH-GVDTLIHGHTHRPA 200 (241)
T ss_pred HHHHHh-CCCEEEECcccCcc
Confidence 344443 79999999999865
No 99
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=60.47 E-value=10 Score=28.58 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCchh--h---HHHHhhCCCccEEEeCCcccee
Q psy11241 18 NKEADRLVREDKVDIVIALSHAGVDL--D---QTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 18 ~~~v~~lr~~~g~D~iI~lsH~g~~~--d---~~la~~~~~iDvIlgGH~H~~~ 66 (148)
++.+++-++. . |++||...-. + ..+..++ .+++|++||.|...
T Consensus 101 ~~~v~RF~~~--F---i~lsH~P~~~~~~~~~~~~~~~~-~p~~Ifs~H~H~s~ 148 (195)
T cd08166 101 ESKIRRFEKY--F---IMLSHVPLLAEGGQALKHVVTDL-DPDLIFSAHRHKSS 148 (195)
T ss_pred HHHHHHHHHh--h---eeeecccccccccHHHHHHHHhc-CceEEEEcCcccee
Confidence 4455665655 2 9999987632 2 3344444 57899999999765
No 100
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=59.75 E-value=42 Score=27.03 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=38.1
Q ss_pred CCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC---CCccEEEeCCccceec
Q psy11241 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS---KHVSIVVGGHSHTFLY 67 (148)
Q Consensus 6 ~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~---~~iDvIlgGH~H~~~~ 67 (148)
+.++..+ +.+-..+.+||+. || ++++=||.+-+--..-++++ .=+|+||+|.++....
T Consensus 138 ~~v~Ir~--~~v~~sL~~Lk~~-g~-vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G~~~~~~ 198 (297)
T PF05152_consen 138 GDVRIRD--PAVYDSLRELKEQ-GC-VLVLWSYGNREHVRHSLKELKLEGYFDIIICGGNKAGEY 198 (297)
T ss_pred CccccCC--hHHHHHHHHHHHc-CC-EEEEecCCCHHHHHHHHHHhCCccccEEEEeCCccCCcC
Confidence 3444444 4666778889988 55 88888998865433333332 2399999888776553
No 101
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=59.57 E-value=25 Score=30.98 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCCCEEEEEeCCCchh--hHHHHhhCCCccEEEeCC
Q psy11241 19 KEADRLVREDKVDIVIALSHAGVDL--DQTVAKASKHVSIVVGGH 61 (148)
Q Consensus 19 ~~v~~lr~~~g~D~iI~lsH~g~~~--d~~la~~~~~iDvIlgGH 61 (148)
..++++.++ |+++||..- +|... ..+.|++. |+|+||..|
T Consensus 118 ~~i~~~~~~-~~~LiItvD-~Gi~~~e~i~~a~~~-gidvIVtDH 159 (575)
T PRK11070 118 EVVDQAHAR-GAQLIVTVD-NGISSHAGVAHAHAL-GIPVLVTDH 159 (575)
T ss_pred HHHHHHHhc-CCCEEEEEc-CCcCCHHHHHHHHHC-CCCEEEECC
Confidence 455666666 789777653 44432 34556664 999999988
No 102
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=59.49 E-value=23 Score=28.11 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeC
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGG 60 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgG 60 (148)
+...+.+.++.++ |+|+||+.+..=.+.-.++|++.|.+-.++..
T Consensus 48 ~~~~~~~~~~~~~-g~dlIi~~g~~~~~~~~~vA~~yPd~~F~~~d 92 (306)
T PF02608_consen 48 ADYEEAIRQLADQ-GYDLIIGHGFEYSDALQEVAKEYPDTKFIIID 92 (306)
T ss_dssp HHHHHHHHHHHHT-T-SEEEEESGGGHHHHHHHHTC-TTSEEEEES
T ss_pred HHHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4566666777666 89999987654333346788888887655553
No 103
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=59.15 E-value=25 Score=27.11 Aligned_cols=44 Identities=11% Similarity=0.289 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCchhh-HHHHhhCCCccEEEe
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVDLD-QTVAKASKHVSIVVG 59 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d-~~la~~~~~iDvIlg 59 (148)
.+.+.+...+|+++ |||+|| |-=+||... ++++++.-++-++++
T Consensus 164 ~~~l~~Aa~~L~~~-gadlIv-LDCmGYt~~~r~~~~~~~g~PVlLs 208 (221)
T PF07302_consen 164 EEELAAAARELAEQ-GADLIV-LDCMGYTQEMRDIVQRALGKPVLLS 208 (221)
T ss_pred HHHHHHHHHHHHhc-CCCEEE-EECCCCCHHHHHHHHHHhCCCEEeH
Confidence 57888889999998 899765 455788653 566666556656654
No 104
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=58.89 E-value=23 Score=27.41 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEe
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG 59 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlg 59 (148)
+...+.+.++-++ |+|+||+.+..-.+.-.+.|++.|.+..++.
T Consensus 44 ~~~~~~i~~~~~~-g~dlIi~~g~~~~~~~~~vA~~~p~~~F~~~ 87 (258)
T cd06353 44 ADAERVLRELAAQ-GYDLIFGTSFGFMDAALKVAKEYPDVKFEHC 87 (258)
T ss_pred HhHHHHHHHHHHc-CCCEEEECchhhhHHHHHHHHHCCCCEEEEC
Confidence 4456666777666 8999999444333333678888998876663
No 105
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=58.60 E-value=34 Score=28.57 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhcCCCCE--EEEEe-CCCchhhHHHHhhCCCccEEEeCCc
Q psy11241 14 ITSVNKEADRLVREDKVDI--VIALS-HAGVDLDQTVAKASKHVSIVVGGHS 62 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~--iI~ls-H~g~~~d~~la~~~~~iDvIlgGH~ 62 (148)
...+.+.+.++++. +.+. ||+-. |.... -.++++..|++|+|+|+..
T Consensus 52 ~~~~~~~i~~~~~~-~~~~~~vvvgGc~a~~~-~ee~~~~~~~vd~vvg~~~ 101 (429)
T TIGR00089 52 EQKVRSRLGELAKL-KKKNAKIVVAGCLAQRE-GEELLKRIPEVDIVLGPQN 101 (429)
T ss_pred HHHHHHHHHHHHHh-CcCCCEEEEECcccccC-HHHHHhhCCCCCEEECCCC
Confidence 34677788888776 5543 44433 33322 2345567899999998764
No 106
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=58.54 E-value=28 Score=29.38 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=27.2
Q ss_pred HhhcCCCCEEEEEeCCCch-hhHHHHhhCCCccEEEeCCccc
Q psy11241 24 LVREDKVDIVIALSHAGVD-LDQTVAKASKHVSIVVGGHSHT 64 (148)
Q Consensus 24 lr~~~g~D~iI~lsH~g~~-~d~~la~~~~~iDvIlgGH~H~ 64 (148)
+|.+ +.+..|+++-.-.. ...++.+++|+||+|+++..-.
T Consensus 68 ~k~~-~p~~~ivv~GC~a~~~~~~~~~~~p~vd~vv~~~~~~ 108 (446)
T PRK14337 68 ATKK-NPDVFVAVGGCVAQQIGSGFFSRFPQVRLVFGTDGIA 108 (446)
T ss_pred HHHh-CCCCEEEEECCccccccHHHHhhCCCCcEEECCCCHH
Confidence 3555 57776766665432 3456777899999999887653
No 107
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=58.10 E-value=22 Score=26.86 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=34.2
Q ss_pred eEEechHHHHHHHHHHHhhc-CCCCEEEEEeCCCchhhHHHHhhC
Q psy11241 8 LRILDEITSVNKEADRLVRE-DKVDIVIALSHAGVDLDQTVAKAS 51 (148)
Q Consensus 8 v~f~d~~~~~~~~v~~lr~~-~g~D~iI~lsH~g~~~d~~la~~~ 51 (148)
+++.+.....++++.++++. ..+|+||+++-.|+---+.|+.-+
T Consensus 7 vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L 51 (192)
T COG2236 7 VSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFL 51 (192)
T ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHh
Confidence 34556677888899999865 379999999999998776666544
No 108
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=57.02 E-value=29 Score=29.17 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=26.3
Q ss_pred HHHHhhcCCCCEEEEEeCCCchh-hHHHHhhCCCccEEEeCCc
Q psy11241 21 ADRLVREDKVDIVIALSHAGVDL-DQTVAKASKHVSIVVGGHS 62 (148)
Q Consensus 21 v~~lr~~~g~D~iI~lsH~g~~~-d~~la~~~~~iDvIlgGH~ 62 (148)
++++|+. .++..|+++-..... -.++++..|++|+|++|..
T Consensus 66 ~~~~k~~-~p~~~vvvgGc~as~~~ee~~~~~~~vD~vv~~e~ 107 (444)
T PRK14325 66 WRKLKEK-NPDLIIGVGGCVAQQEGEEILKRAPYVDIVFGPQT 107 (444)
T ss_pred HHHHHHh-CCCCEEEEECchhccCHHHHHhhCCCCcEEECCCC
Confidence 3445655 567777776553332 2356666899999998874
No 109
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=56.57 E-value=28 Score=27.44 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCchhh---HHHHhhC--CCccEEEeC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDLD---QTVAKAS--KHVSIVVGG 60 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d---~~la~~~--~~iDvIlgG 60 (148)
.--+.+.+....|+++ .+.+.|+-+|.|+-.. ..+++.+ -+.|+++.|
T Consensus 116 gkp~V~~~a~~~l~~~-~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~Vg 168 (253)
T COG1922 116 GKPGVAEQAAAKLRAK-YPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLVG 168 (253)
T ss_pred CCHHHHHHHHHHHHHH-CCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEEe
Confidence 3346778888889988 6779999999998532 3455544 578888876
No 110
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=56.03 E-value=29 Score=29.05 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=27.1
Q ss_pred HHHHhhcCCCCEEEEEeCCCchh-hHHHHhhCCCccEEEeCCc
Q psy11241 21 ADRLVREDKVDIVIALSHAGVDL-DQTVAKASKHVSIVVGGHS 62 (148)
Q Consensus 21 v~~lr~~~g~D~iI~lsH~g~~~-d~~la~~~~~iDvIlgGH~ 62 (148)
+.++|.+ +.+..|+++-+-... -.+|++.+|++|+|+|.+.
T Consensus 64 ~~~~~~~-~~~~~ivv~GC~~~~~~~~l~~~~p~vd~v~g~~~ 105 (418)
T PRK14336 64 LRKLKNK-NPKLKIALTGCLVGQDISLIRKKFPFVDYIFGPGS 105 (418)
T ss_pred HHHHHhh-CCCCEEEEECChhcCCHHHHHhhCCCCcEEECCCC
Confidence 3444544 567777777763332 3567778999999997753
No 111
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=55.91 E-value=34 Score=28.85 Aligned_cols=34 Identities=9% Similarity=0.268 Sum_probs=22.8
Q ss_pred CCCEEEEEeCCCch-hhHHHHhhCCCccEEEeCCc
Q psy11241 29 KVDIVIALSHAGVD-LDQTVAKASKHVSIVVGGHS 62 (148)
Q Consensus 29 g~D~iI~lsH~g~~-~d~~la~~~~~iDvIlgGH~ 62 (148)
.++..|+++-.--. .-.+++++.|++|+|+|+..
T Consensus 76 ~p~~~vvv~Gc~a~~~~~~~~~~~p~vD~v~g~~~ 110 (448)
T PRK14333 76 NPDLTLVVAGCVAQQEGESLLRRVPELDLVMGPQH 110 (448)
T ss_pred CCCCEEEEECccCccCHHHHHhcCCCCCEEECCCC
Confidence 57776666554222 23457777899999998765
No 112
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=54.32 E-value=37 Score=26.61 Aligned_cols=44 Identities=27% Similarity=0.380 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCC-ccEEEeCC
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKH-VSIVVGGH 61 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~-iDvIlgGH 61 (148)
.+.+.+.+++|+++ ++|+||++. -.....+++...+ +-+|++|=
T Consensus 45 ~~~~~~~~~~l~~~-~~DlIi~~g---t~aa~~~~~~~~~~iPVVf~~V 89 (294)
T PF04392_consen 45 PEKLRQIARKLKAQ-KPDLIIAIG---TPAAQALAKHLKDDIPVVFCGV 89 (294)
T ss_dssp HHHHHHHHHHHCCT-S-SEEEEES---HHHHHHHHHH-SS-S-EEEECE
T ss_pred HHHHHHHHHHHhcC-CCCEEEEeC---cHHHHHHHHhcCCCcEEEEEec
Confidence 46777888888887 799999883 2334556677766 88888874
No 113
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase. S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine.
Probab=54.30 E-value=38 Score=26.36 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC---CCccEEEeCCc
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS---KHVSIVVGGHS 62 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~---~~iDvIlgGH~ 62 (148)
+-+.+.++.++++ ...||.||=.|-.-++++|+++ +.+ ++++||-
T Consensus 65 epl~~al~~~~~~--~~~vi~lsP~G~~f~Q~~a~ela~~~~l-illCGrY 112 (233)
T TIGR00088 65 EPIRDALHSVKAP--AGTVILLSPQGRKFDQAGARELAQNEHL-ILICGRY 112 (233)
T ss_pred HHHHHHHHHHhhc--CCcEEEECCCCCcCCHHHHHHHhCCCCE-EEEeccc
Confidence 3344455555554 2458999999977666666654 444 5678884
No 114
>KOG0541|consensus
Probab=53.74 E-value=32 Score=25.36 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC
Q psy11241 17 VNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS 51 (148)
Q Consensus 17 ~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~ 51 (148)
--+.+++||++ |+|-|||+|=..--.....++.+
T Consensus 67 yi~~a~elksK-GVd~iicvSVnDpFv~~aW~k~~ 100 (171)
T KOG0541|consen 67 YIEKADELKSK-GVDEIICVSVNDPFVMKAWAKSL 100 (171)
T ss_pred HHHHHHHHHhc-CCcEEEEEecCcHHHHHHHHhhc
Confidence 34567888888 89999999976544455666665
No 115
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=53.25 E-value=39 Score=24.24 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=28.2
Q ss_pred HHHHhhcCCCCEEEEEeCCCchh---h---HHHHhhC--CCccEEEeCCccc
Q psy11241 21 ADRLVREDKVDIVIALSHAGVDL---D---QTVAKAS--KHVSIVVGGHSHT 64 (148)
Q Consensus 21 v~~lr~~~g~D~iI~lsH~g~~~---d---~~la~~~--~~iDvIlgGH~H~ 64 (148)
++++..- |+|-|+++.|..+.. + ..|++.+ .+.|+||.||+..
T Consensus 44 ~~~~~~~-Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~~~p~~Vl~~~t~~ 94 (168)
T cd01715 44 AAALKAY-GADKVLVAEDPALAHYLAEPYAPALVALAKKEKPSHILAGATSF 94 (168)
T ss_pred HHHHHhc-CCCEEEEecChhhcccChHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 5556666 999999998865432 1 2233221 2589999999964
No 116
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=53.12 E-value=39 Score=24.53 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCch---hhHHHHhhC--CCccEEEeC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVD---LDQTVAKAS--KHVSIVVGG 60 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~---~d~~la~~~--~~iDvIlgG 60 (148)
..-+.+++....|+++ .+++.|+-+|.|+- ++.++++.+ .+.|+|+.|
T Consensus 56 ~~~~~~~~~~~~l~~~-yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 56 GSEEVLEKAAANLRRR-YPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred CCHHHHHHHHHHHHHH-CCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 4457788888899988 78999998888753 234555544 467888876
No 117
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=52.61 E-value=17 Score=25.49 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCchhh---HHHHhhCCCccEEEe
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDLD---QTVAKASKHVSIVVG 59 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d---~~la~~~~~iDvIlg 59 (148)
|...++++++++.+++ |.+.|.+.-|..+... ...++. .+|.+++|
T Consensus 13 dg~~~~~e~v~~A~~~-Gl~~i~iTDH~~~~~~~~~~~~~~~-~~i~vi~G 61 (175)
T PF02811_consen 13 DGKDSPEEYVEQAKEK-GLDAIAITDHNNFAGYPDFYKEAKK-KGIKVIPG 61 (175)
T ss_dssp TSSSSHHHHHHHHHHT-TESEEEEEEETTTTTHHHHHHHHHH-TTSEEEEE
T ss_pred hhcCCHHHHHHHHHHc-CCCEEEEcCCcccccchHHHHHHHh-cCCceEEe
Confidence 4455778888888988 9999999999766543 233333 56777766
No 118
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=51.82 E-value=41 Score=28.98 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=26.8
Q ss_pred HHHHHhhcCCCCEEEEEeCCCch-hhHHHHhhCCCccEEEeCCcc
Q psy11241 20 EADRLVREDKVDIVIALSHAGVD-LDQTVAKASKHVSIVVGGHSH 63 (148)
Q Consensus 20 ~v~~lr~~~g~D~iI~lsH~g~~-~d~~la~~~~~iDvIlgGH~H 63 (148)
.++++|+. ..++.|+++-.--. .-.++.+..|++|+|++++.-
T Consensus 75 ~~~~~k~~-~p~~~VvvgGc~a~~~~ee~~~~~p~VD~Vvg~~~~ 118 (502)
T PRK14326 75 HLAPVKRA-NPGMQIAVGGCLAQKDRDTILKRAPWVDVVFGTHNI 118 (502)
T ss_pred HHHHHHHh-CCCCEEEEECcccccCHHHHHhhCCCCeEEECCCCH
Confidence 34555554 46666666543222 234566778999999998763
No 119
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed
Probab=51.51 E-value=51 Score=25.85 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCEEEEEeCCCchhhHHHHhhC---CCccEEEeCCc
Q psy11241 30 VDIVIALSHAGVDLDQTVAKAS---KHVSIVVGGHS 62 (148)
Q Consensus 30 ~D~iI~lsH~g~~~d~~la~~~---~~iDvIlgGH~ 62 (148)
-..||.||=.|-.-++++|+++ +.+ ++++||-
T Consensus 81 ~~~vi~lsP~G~~f~Q~~a~~ls~~~~l-illCGrY 115 (244)
T PRK00026 81 KAKVILLSPQGKPFTQADARELAKEEHL-ILLCGRY 115 (244)
T ss_pred CCeEEEECCCCCcCCHHHHHHHhCCCCE-EEEeccc
Confidence 3569999999987777666655 444 5779984
No 120
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=51.50 E-value=42 Score=28.09 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhh-cCCCCEEEEEeCC-CchhhHHHHhhCCCccEEEeCCc
Q psy11241 15 TSVNKEADRLVR-EDKVDIVIALSHA-GVDLDQTVAKASKHVSIVVGGHS 62 (148)
Q Consensus 15 ~~~~~~v~~lr~-~~g~D~iI~lsH~-g~~~d~~la~~~~~iDvIlgGH~ 62 (148)
....+.+.+|+. + +.+..|+++-+ ......++++.+|++|+|+|-+.
T Consensus 44 ~k~~~~i~~~~~~~-~~~~~ivv~GC~a~~~~~~~~~~~~~vd~v~g~~~ 92 (420)
T PRK14339 44 HKLFSEIGQFNKIK-KEGAKIGVCGCTASHLGEEIIKRAPYVDFVLGARN 92 (420)
T ss_pred HHHHHHHHHHHHhh-CCCCeEEEECCccccCCHHHHhhCCCCcEEECCCC
Confidence 345556666654 3 34434555555 32234567778999999987654
No 121
>KOG1378|consensus
Probab=51.47 E-value=23 Score=30.28 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=38.8
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH-----------H---HHhhC---CCccEEEeCCcccee
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ-----------T---VAKAS---KHVSIVVGGHSHTFL 66 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~-----------~---la~~~---~~iDvIlgGH~H~~~ 66 (148)
.+..+-+++.+++.+.+ ++--+|++.|.-+...- . -.+.+ -++|+++.||-|..-
T Consensus 274 ~~QY~WL~~dL~~v~r~-~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YE 345 (452)
T KOG1378|consen 274 TAQYQWLERDLASVDRK-KTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYE 345 (452)
T ss_pred chHHHHHHHHHHHhccc-CCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehh
Confidence 45667888888887766 38899999998764210 1 11221 589999999999765
No 122
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=51.46 E-value=48 Score=24.14 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCch---h--------------hHHHHhhCCCccEEEeC
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVD---L--------------DQTVAKASKHVSIVVGG 60 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~---~--------------d~~la~~~~~iDvIlgG 60 (148)
+.+.+.+..|+.. ++++|++-.-.|+. . ++.||+....+.++++|
T Consensus 103 ~~i~~l~~~l~~~-~~~~viVsnEvG~g~vp~~~~~r~f~d~lG~lnq~la~~ad~v~~vv~G 164 (169)
T cd00544 103 DEIDALLAAVRNK-PGTLILVSNEVGLGVVPENALGRRFRDELGRLNQRLAALADEVYLVVSG 164 (169)
T ss_pred HHHHHHHHHHHcC-CCcEEEEECCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECC
Confidence 4566688888887 89999998877764 1 25788888888888887
No 123
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=50.65 E-value=19 Score=30.16 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCchh
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVDL 43 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~ 43 (148)
+.++-..++.|.++ ||- ||++||+|-+.
T Consensus 38 I~a~lpTIk~l~~~-ga~-Vvl~SHlGRPk 65 (395)
T COG0126 38 IRAALPTIKYLLEK-GAK-VVLLSHLGRPK 65 (395)
T ss_pred HHHhhHHHHHHHhC-CCe-EEEEecCCCCC
Confidence 44555567777777 777 99999999874
No 124
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=49.69 E-value=16 Score=28.50 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=14.6
Q ss_pred HHHhhCCCccEEEeCCcccee
Q psy11241 46 TVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 46 ~la~~~~~iDvIlgGH~H~~~ 66 (148)
.|.+.+ ...+|++||+|..-
T Consensus 210 ~il~~~-~P~~vfsGhdH~~C 229 (257)
T cd08163 210 VILKAV-QPVIAFSGDDHDYC 229 (257)
T ss_pred HHHHhh-CCcEEEecCCCccc
Confidence 455555 45789999999764
No 125
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=49.58 E-value=67 Score=22.57 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCchhh------HHHHhh-CCCccEEEeCC
Q psy11241 16 SVNKEADRLVREDKVDIVIALSHAGVDLD------QTVAKA-SKHVSIVVGGH 61 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH~g~~~d------~~la~~-~~~iDvIlgGH 61 (148)
...+.++..++. ++|+|.+-+-++.... ..|.+. .+++-+++||-
T Consensus 42 p~e~i~~~a~~~-~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~ 93 (137)
T PRK02261 42 SQEEFIDAAIET-DADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGN 93 (137)
T ss_pred CHHHHHHHHHHc-CCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECC
Confidence 344455555555 6887776655553321 233333 35677778874
No 126
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=48.54 E-value=24 Score=25.17 Aligned_cols=23 Identities=48% Similarity=0.645 Sum_probs=16.2
Q ss_pred HHHHhhcCCCCEEEEEeCCCchh
Q psy11241 21 ADRLVREDKVDIVIALSHAGVDL 43 (148)
Q Consensus 21 v~~lr~~~g~D~iI~lsH~g~~~ 43 (148)
+++|-+++|||+||+|.-.|-.+
T Consensus 48 akrLieeeGCd~Vi~lG~~G~t~ 70 (154)
T COG1731 48 AKRLIEEEGCDIVIALGWVGPTE 70 (154)
T ss_pred HHHHHHhcCCcEEEEccCcCcch
Confidence 34444445999999998877553
No 127
>KOG0092|consensus
Probab=47.67 E-value=23 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCc
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGV 41 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~ 41 (148)
+..+.++.|+++|+.+...|+||+|...=.
T Consensus 91 ~SF~~aK~WvkeL~~~~~~~~vialvGNK~ 120 (200)
T KOG0092|consen 91 ESFEKAKNWVKELQRQASPNIVIALVGNKA 120 (200)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEecchh
Confidence 457899999999999877999999976543
No 128
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=47.47 E-value=59 Score=21.67 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHhhcCCC-CEEEEEeCCCchhhHHHHhhCCCccEEEe
Q psy11241 12 DEITSVNKEADRLVREDKV-DIVIALSHAGVDLDQTVAKASKHVSIVVG 59 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~-D~iI~lsH~g~~~d~~la~~~~~iDvIlg 59 (148)
.....++++++++|+. +. ++.|++.-.....+.+.+++. |+|.++.
T Consensus 62 ~~~~~~~~~i~~l~~~-~~~~~~i~vGG~~~~~~~~~~~~~-G~D~~~~ 108 (119)
T cd02067 62 THMTLMKEVIEELKEA-GLDDIPVLVGGAIVTRDFKFLKEI-GVDAYFG 108 (119)
T ss_pred ccHHHHHHHHHHHHHc-CCCCCeEEEECCCCChhHHHHHHc-CCeEEEC
Confidence 4556667777777776 55 666666665555444454443 5666654
No 129
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.17 E-value=59 Score=27.54 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=25.8
Q ss_pred CCEEEEEeCCCchh-hHHHHhhCCCccEEEeCCcccee
Q psy11241 30 VDIVIALSHAGVDL-DQTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 30 ~D~iI~lsH~g~~~-d~~la~~~~~iDvIlgGH~H~~~ 66 (148)
.+..|+++-+-... -.++++.+|++|+++|.+....+
T Consensus 70 ~~~~ivv~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~~ 107 (455)
T PRK14335 70 RAFFIILMGCMAERLHDEIQKEFPRIDYVVGTFAHARL 107 (455)
T ss_pred CCcEEEEecccccchHHHHHhhCCCCcEEECCCCHHHH
Confidence 67777776653332 24677788999999988776544
No 130
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=46.28 E-value=1.3e+02 Score=23.00 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=27.9
Q ss_pred CCccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCcc-ccceeEEEEEEecCCCEEEEece
Q psy11241 52 KHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAY-SRYLGLIHLQYNDKGNIVSWRGD 126 (148)
Q Consensus 52 ~~iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~-g~~lg~l~l~~~~~g~v~~~~~~ 126 (148)
.+.+.|+.||+-... |... + +++-+-+|+. |..|+-+.+ .++++..+...
T Consensus 183 ~g~~~vV~GHtp~~~----------------~~~~-~-----~~i~IDtGa~~gG~Ltal~l---~~~~~~~v~~~ 233 (245)
T PRK13625 183 KGTAWIVYGHTPVKE----------------PRFV-N-----HTVNIDTGCVFGGRLTALRY---PEMETVSVPSS 233 (245)
T ss_pred CCCcEEEECCCCCcc----------------ceec-C-----CeEEEECcCccCCEEEEEEC---CCCcEEEEECc
Confidence 456688999975432 3333 3 4566666664 545655555 34555554443
No 131
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=45.93 E-value=73 Score=23.80 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCchh---h---H---HHHhhCCCccEEEeCCccc
Q psy11241 18 NKEADRLVREDKVDIVIALSHAGVDL---D---Q---TVAKASKHVSIVVGGHSHT 64 (148)
Q Consensus 18 ~~~v~~lr~~~g~D~iI~lsH~g~~~---d---~---~la~~~~~iDvIlgGH~H~ 64 (148)
.....++... |+|-|+++.+.++.. + . +++++ .+.|+||.||+-.
T Consensus 66 ~~~~~~l~~~-G~d~V~~~~~~~~~~~~~e~~a~al~~~i~~-~~p~lVL~~~t~~ 119 (202)
T cd01714 66 EEALREALAM-GADRAILVSDRAFAGADTLATAKALAAAIKK-IGVDLILTGKQSI 119 (202)
T ss_pred HHHHHHHHHc-CCCEEEEEecccccCCChHHHHHHHHHHHHH-hCCCEEEEcCCcc
Confidence 3444555445 899999998876543 1 1 23333 3589999999974
No 132
>KOG0781|consensus
Probab=45.39 E-value=48 Score=28.89 Aligned_cols=47 Identities=6% Similarity=0.131 Sum_probs=33.8
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHh------hCCCccEEE
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAK------ASKHVSIVV 58 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~------~~~~iDvIl 58 (148)
.|+...+++.+++.|.+ |.|+|.+=+-..+.++..|.. .+...|.|+
T Consensus 449 kd~a~vak~AI~~a~~~-gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~ 501 (587)
T KOG0781|consen 449 KDAAGVAKEAIQEARNQ-GFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLIL 501 (587)
T ss_pred CChHHHHHHHHHHHHhc-CCCEEEEeccccccCChhHHHHHHHHHhcCCCceEE
Confidence 36778899999999999 999887766666665543332 235677776
No 133
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=45.18 E-value=78 Score=22.10 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
.+..+.++..++. ++|+|++-+-++
T Consensus 40 ~s~e~~v~aa~e~-~adii~iSsl~~ 64 (132)
T TIGR00640 40 QTPEEIARQAVEA-DVHVVGVSSLAG 64 (132)
T ss_pred CCHHHHHHHHHHc-CCCEEEEcCchh
Confidence 3445566666665 799888877665
No 134
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=45.06 E-value=75 Score=21.46 Aligned_cols=50 Identities=22% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCch-hhHHHH----hhCCCccEEEeCCcccee
Q psy11241 17 VNKEADRLVREDKVDIVIALSHAGVD-LDQTVA----KASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 17 ~~~~v~~lr~~~g~D~iI~lsH~g~~-~d~~la----~~~~~iDvIlgGH~H~~~ 66 (148)
....+++++++..+|+|.+-+..... ...+++ +..|.+=+|+||+.-+..
T Consensus 27 ~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~ 81 (127)
T cd02068 27 ADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFF 81 (127)
T ss_pred HHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhC
Confidence 34556666652269988776654433 223333 334778788888654443
No 135
>PRK12342 hypothetical protein; Provisional
Probab=44.84 E-value=75 Score=24.95 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=25.1
Q ss_pred HHHhhcCCCCEEEEEeCC---Cchh---hHHHHhhC--CCccEEEeCCcc
Q psy11241 22 DRLVREDKVDIVIALSHA---GVDL---DQTVAKAS--KHVSIVVGGHSH 63 (148)
Q Consensus 22 ~~lr~~~g~D~iI~lsH~---g~~~---d~~la~~~--~~iDvIlgGH~H 63 (148)
++.-+- |+|=.|+++-- |.+. .+.||+.+ -++|+||+|..-
T Consensus 71 r~alam-GaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s 119 (254)
T PRK12342 71 KDVLSR-GPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGS 119 (254)
T ss_pred HHHHHc-CCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 333345 89999999833 2221 24455433 369999999654
No 136
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=44.84 E-value=51 Score=23.70 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=32.8
Q ss_pred EEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC
Q psy11241 9 RILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS 51 (148)
Q Consensus 9 ~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~ 51 (148)
+..+....+++++.++.+.+..|+||++...|+---..|+..+
T Consensus 11 s~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L 53 (156)
T PRK09177 11 SWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILAREL 53 (156)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHc
Confidence 4455667788888888765248999999999997666677765
No 137
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.73 E-value=26 Score=27.31 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=14.2
Q ss_pred CCccEEEeCCccceec
Q psy11241 52 KHVSIVVGGHSHTFLY 67 (148)
Q Consensus 52 ~~iDvIlgGH~H~~~~ 67 (148)
.++|.++.||+|....
T Consensus 186 ~~vd~vI~GH~Hr~ai 201 (237)
T COG2908 186 HGVDGVIHGHTHRPAI 201 (237)
T ss_pred cCCCEEEecCcccHhh
Confidence 7899999999998763
No 138
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=44.52 E-value=35 Score=30.89 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=38.5
Q ss_pred eEEechH-HHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeC
Q psy11241 8 LRILDEI-TSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGG 60 (148)
Q Consensus 8 v~f~d~~-~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgG 60 (148)
+.+.|++ +.+++.+++||+. |.. +++||-.-...-+.+|+++ |||=+..+
T Consensus 532 i~~~D~~R~~a~~aI~~L~~~-Gi~-~~mLTGDn~~~A~~iA~~l-GId~v~Ae 582 (713)
T COG2217 532 IALADELRPDAKEAIAALKAL-GIK-VVMLTGDNRRTAEAIAKEL-GIDEVRAE 582 (713)
T ss_pred EEEeCCCChhHHHHHHHHHHC-CCe-EEEEcCCCHHHHHHHHHHc-ChHhhecc
Confidence 5566654 6899999999999 898 8888887666678898887 67655553
No 139
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=44.45 E-value=83 Score=22.08 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCchhh------HHHHhh-CCCccEEEeCC
Q psy11241 16 SVNKEADRLVREDKVDIVIALSHAGVDLD------QTVAKA-SKHVSIVVGGH 61 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH~g~~~d------~~la~~-~~~iDvIlgGH 61 (148)
...+.++..++. ++|+|-+-+.++.... ..|.++ +.++=+++||-
T Consensus 38 ~~e~~v~aa~~~-~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~ 89 (128)
T cd02072 38 PQEEFIDAAIET-DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGN 89 (128)
T ss_pred CHHHHHHHHHHc-CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECC
Confidence 445566666666 7998777666654321 123222 33566777875
No 140
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=44.45 E-value=60 Score=26.93 Aligned_cols=44 Identities=30% Similarity=0.349 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC---CCccEEEeCCc
Q psy11241 16 SVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS---KHVSIVVGGHS 62 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~---~~iDvIlgGH~ 62 (148)
-+.+.++.++.+ ...||.||=.|-.-++.+|+++ +.+ ++|+||-
T Consensus 65 pi~~a~~~~~~~--~~~vi~lsP~G~~f~Q~~a~ela~~~~l-iliCGrY 111 (357)
T PRK01037 65 PVVQAIRSVRRE--KSKVIYLSPQGQLLTAKKSRELASCSHL-ILLCGHY 111 (357)
T ss_pred HHHHHHHHHHhc--CCcEEEECCCCCcCCHHHHHHHhCCCCE-EEEeccc
Confidence 344445555543 2358999999987776666654 334 5668884
No 141
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=44.30 E-value=54 Score=27.75 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhcCCCCEEEEEe--CCCchhhHHHHhhCCCccEEEeCC
Q psy11241 16 SVNKEADRLVREDKVDIVIALS--HAGVDLDQTVAKASKHVSIVVGGH 61 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~ls--H~g~~~d~~la~~~~~iDvIlgGH 61 (148)
.+.++++.+|+. .+++.|++. |....-+ ++.+..+.+|.|+.|-
T Consensus 83 ~~~~ia~~iK~~-~p~~~vv~GG~h~t~~pe-~~l~~~~~vD~Vv~GE 128 (472)
T TIGR03471 83 SDVKTAEALKEQ-NPATKIGFVGAHVAVLPE-KTLKQGPAIDFVCRRE 128 (472)
T ss_pred HHHHHHHHHHHh-CCCCEEEEECCCcccCHH-HHHhcCCCeeEEEeCc
Confidence 344445555544 344444443 2222212 2223344555555543
No 142
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=43.92 E-value=71 Score=24.94 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC---CCccEEEeCCc
Q psy11241 17 VNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS---KHVSIVVGGHS 62 (148)
Q Consensus 17 ~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~---~~iDvIlgGH~ 62 (148)
+...++.+++. +--.||+||=.|-.-+++.|+++ +.+ ++++||-
T Consensus 67 i~~Al~~~~~~-~~~~vi~lsP~G~~f~Q~~a~eLa~~~~l-v~iCGrY 113 (240)
T COG0336 67 LFDALDSVKAA-KKAKVILLSPQGKPFTQARARELAKEEHL-VLICGRY 113 (240)
T ss_pred HHHHHHHHHhc-cCCeEEEECCCCCccCHHHHHHHhcCCCE-EEEeccc
Confidence 34444555544 23468899998877665555443 455 6778884
No 143
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=43.66 E-value=87 Score=23.71 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=11.5
Q ss_pred ccEEEeCCccce
Q psy11241 54 VSIVVGGHSHTF 65 (148)
Q Consensus 54 iDvIlgGH~H~~ 65 (148)
+++|+.||.|..
T Consensus 182 v~~vl~GH~H~~ 193 (301)
T COG1409 182 VRLVLSGHIHLA 193 (301)
T ss_pred eEEEEeCccccc
Confidence 999999999987
No 144
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=43.48 E-value=33 Score=26.46 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCch
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVD 42 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~ 42 (148)
...+++.+.+|.++ |||+|++|+-.-+.
T Consensus 73 ~~~lq~~i~~le~~-G~d~illlCTG~F~ 100 (221)
T PF07302_consen 73 EPRLQACIAQLEAQ-GYDVILLLCTGEFP 100 (221)
T ss_pred HHHHHHHHHHHHHC-CCCEEEEeccCCCC
Confidence 45788899999998 99999999877655
No 145
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=43.27 E-value=87 Score=24.17 Aligned_cols=52 Identities=27% Similarity=0.304 Sum_probs=41.8
Q ss_pred eEEechHHHHHHHHHHHhhcC-CCC-EEEEEeCCCchhhHHHHhhC-CCccEEEe
Q psy11241 8 LRILDEITSVNKEADRLVRED-KVD-IVIALSHAGVDLDQTVAKAS-KHVSIVVG 59 (148)
Q Consensus 8 v~f~d~~~~~~~~v~~lr~~~-g~D-~iI~lsH~g~~~d~~la~~~-~~iDvIlg 59 (148)
..|.|-.++.++++++|.+-. ..+ +|.+|...|.+.-.++|+.+ -..|++|-
T Consensus 2 ~~F~DR~dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliV 56 (220)
T COG1926 2 MMFRDRTDAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIV 56 (220)
T ss_pred CccccHHHHHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEE
Confidence 568999999999999987652 244 78889999999999999987 34888773
No 146
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=43.13 E-value=55 Score=27.37 Aligned_cols=42 Identities=7% Similarity=0.069 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeC
Q psy11241 17 VNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGG 60 (148)
Q Consensus 17 ~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgG 60 (148)
+.+.+.++|+. |+.+|+.=.|..... .++++..+++|+|+|-
T Consensus 55 ~~~~i~~~~~~-~~~vvvgGc~a~~~p-ee~~~~~~~vd~v~g~ 96 (430)
T TIGR01125 55 SIDTIGELADA-GKKVIVTGCLVQRYK-EELKEEIPEVHAITGS 96 (430)
T ss_pred HHHHHHHHHhc-CCCEEEECCccccch-HHHHhhCCCCcEEECC
Confidence 67778888877 665444334444333 3455668999998854
No 147
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.93 E-value=32 Score=27.58 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=20.8
Q ss_pred HHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeC
Q psy11241 19 KEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGG 60 (148)
Q Consensus 19 ~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgG 60 (148)
..+..|..+ ||.+.++.++. +.|.+.+...|+++++
T Consensus 172 Pla~lL~~~-gAtVtv~hs~t-----~~l~~~~~~ADIvV~A 207 (285)
T PRK14191 172 PLAMLMLNA-GASVSVCHILT-----KDLSFYTQNADIVCVG 207 (285)
T ss_pred HHHHHHHHC-CCEEEEEeCCc-----HHHHHHHHhCCEEEEe
Confidence 344444444 67666664442 3455556677888865
No 148
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=42.66 E-value=73 Score=18.91 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCchhh---HHHHhhCCCccEEEe
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDLD---QTVAKASKHVSIVVG 59 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d---~~la~~~~~iDvIlg 59 (148)
+-....+++++.++++ |.+.+.+--|..+... .+++++ .++.+|.|
T Consensus 12 ~~~~~~~~~~~~a~~~-g~~~v~iTDh~~~~~~~~~~~~~~~-~gi~~i~G 60 (67)
T smart00481 12 DGALSPEELVKRAKEL-GLKAIAITDHGNLFGAVEFYKAAKK-AGIKPIIG 60 (67)
T ss_pred cccCCHHHHHHHHHHc-CCCEEEEeeCCcccCHHHHHHHHHH-cCCeEEEE
Confidence 3344577888888888 9999999999855443 333333 46666554
No 149
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional
Probab=42.52 E-value=62 Score=25.04 Aligned_cols=41 Identities=32% Similarity=0.395 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC----CCccEEEeCCc
Q psy11241 19 KEADRLVREDKVDIVIALSHAGVDLDQTVAKAS----KHVSIVVGGHS 62 (148)
Q Consensus 19 ~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~----~~iDvIlgGH~ 62 (148)
+.++.++.. + ..||.||=.|-.-++++|+++ +.+ ++++||-
T Consensus 69 ~al~~~~~~-~-~~vi~lsP~G~~f~Q~~a~eLa~~~~~l-iliCGrY 113 (222)
T PRK14599 69 KALLSLGEK-K-GIVILTSPSGIPFNQTIARELKESGKPL-TFISGYY 113 (222)
T ss_pred HHHHHHhhc-C-CcEEEECCCCCccCHHHHHHHHhCCCCE-EEEeccc
Confidence 334444543 2 358999999977666665544 334 5679984
No 150
>PRK04036 DNA polymerase II small subunit; Validated
Probab=42.05 E-value=26 Score=30.23 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=22.5
Q ss_pred ccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCcccc
Q psy11241 54 VSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSR 105 (148)
Q Consensus 54 iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~g~ 105 (148)
.|+++.||.|.... ..+ + ++.++.+|+|-.
T Consensus 441 Pdv~~~GH~H~~~~----------------~~~-~-----g~~~IN~gsf~~ 470 (504)
T PRK04036 441 PDIFHTGHVHINGY----------------GKY-R-----GVLLINSGTWQA 470 (504)
T ss_pred CCEEEeCCCCccce----------------EEE-C-----CEEEEECCcccc
Confidence 48999999998652 123 4 688999998764
No 151
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=41.63 E-value=54 Score=25.53 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCchh---hHHHHhhC--CCccEEEeC
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVDL---DQTVAKAS--KHVSIVVGG 60 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~---d~~la~~~--~~iDvIlgG 60 (148)
-+++++.++.|+++ ..+-|+-+|.|+-. +..+++.+ .+.|+++-|
T Consensus 115 ~~v~~~a~~~l~~~--y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~Vg 164 (243)
T PRK03692 115 PEVLAQTEAKLRTQ--WNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVA 164 (243)
T ss_pred HHHHHHHHHHHHHH--hCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 35778888888887 36777777888752 34455544 568888876
No 152
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.99 E-value=70 Score=27.13 Aligned_cols=45 Identities=24% Similarity=0.202 Sum_probs=28.7
Q ss_pred HHHHhhcCCCCEEEEEeCCCchhh-HHH-HhhCCCccEEEeCCcccee
Q psy11241 21 ADRLVREDKVDIVIALSHAGVDLD-QTV-AKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 21 v~~lr~~~g~D~iI~lsH~g~~~d-~~l-a~~~~~iDvIlgGH~H~~~ 66 (148)
+.++|.+ +++..|+++-+=.... .+| ++.+|++|+|+|++....+
T Consensus 83 ~~~~k~~-~p~~~ivv~GC~a~~~~~~~~~~~~p~vd~v~g~~~~~~i 129 (459)
T PRK14338 83 LQRLKRQ-RPDTRIVLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDEV 129 (459)
T ss_pred HHHHHhh-CCCCEEEEeCCccccChhHhhHhcCCCCcEEECCccHHHH
Confidence 4555555 6776666666522222 345 6789999999998766433
No 153
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=40.98 E-value=88 Score=22.71 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCch---h--------------hHHHHhhCCCccEEEeC
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVD---L--------------DQTVAKASKHVSIVVGG 60 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~---~--------------d~~la~~~~~iDvIlgG 60 (148)
+.+.+++..|++. ++.+|++-.=.|.. . .+.||+....+.++++|
T Consensus 103 ~~l~~li~~L~~~-~~tvVlVs~Evg~g~vp~~~~~r~~~d~lG~lnq~la~~ad~V~~v~~G 164 (170)
T PRK05800 103 AEIDALLAALQQL-PAKIILVTNEVGMGIVPEYRLGRHFRDIAGRLNQQLAAAADEVYLVVAG 164 (170)
T ss_pred HHHHHHHHHHHcC-CCCEEEEEcCCcccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEeCC
Confidence 3455677778887 88988887655543 1 25788888889999887
No 154
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=40.51 E-value=68 Score=27.48 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=26.8
Q ss_pred eEEechHH---HHHHHHHHHhhcCCCCEEEEEeCCC-chhhHHHHh----hCCCccEEEeCC
Q psy11241 8 LRILDEIT---SVNKEADRLVREDKVDIVIALSHAG-VDLDQTVAK----ASKHVSIVVGGH 61 (148)
Q Consensus 8 v~f~d~~~---~~~~~v~~lr~~~g~D~iI~lsH~g-~~~d~~la~----~~~~iDvIlgGH 61 (148)
++|-|... .....++.|++. ++|+|.+-+... +....++++ ..|++=+|+||+
T Consensus 40 V~iiD~~~~~~~~~~~~~~l~~~-~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~ 100 (497)
T TIGR02026 40 VTFLDAMTGPLTDEKLVERLRAH-CPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGI 100 (497)
T ss_pred eEEecccccCCCHHHHHHHHHhc-CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 55555322 123455566665 677666544322 222333332 346776777775
No 155
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.29 E-value=36 Score=27.32 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=33.5
Q ss_pred HHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEe--CCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEe
Q psy11241 22 DRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG--GHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQ 99 (148)
Q Consensus 22 ~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlg--GH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq 99 (148)
..|.++ +|-+.++-++. +.|.+.+...|+++. |..+..- +.++.. +++|+-
T Consensus 182 ~lL~~~-~atVtv~hs~T-----~~l~~~~~~ADIvv~AvG~p~~i~----------------~~~vk~-----gavVID 234 (287)
T PRK14176 182 AMLLNR-NATVSVCHVFT-----DDLKKYTLDADILVVATGVKHLIK----------------ADMVKE-----GAVIFD 234 (287)
T ss_pred HHHHHC-CCEEEEEeccC-----CCHHHHHhhCCEEEEccCCccccC----------------HHHcCC-----CcEEEE
Confidence 334433 45444444433 235555567788886 6655432 123433 567776
Q ss_pred cCc---cccceeEEEE
Q psy11241 100 AAA---YSRYLGLIHL 112 (148)
Q Consensus 100 ~g~---~g~~lg~l~l 112 (148)
.|. .|+.+|.+++
T Consensus 235 vGin~~~gkl~GDvd~ 250 (287)
T PRK14176 235 VGITKEEDKVYGDVDF 250 (287)
T ss_pred ecccccCCCccCCcCH
Confidence 665 3556666553
No 156
>KOG2653|consensus
Probab=40.21 E-value=61 Score=27.32 Aligned_cols=45 Identities=29% Similarity=0.457 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCchhhH---HHHhhCCCccEEE-eCCcc
Q psy11241 16 SVNKEADRLVREDKVDIVIALSHAGVDLDQ---TVAKASKHVSIVV-GGHSH 63 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~---~la~~~~~iDvIl-gGH~H 63 (148)
+++..+..|| .+-.|++|--.|-+.|. +|..-+..=|+|+ ||.+|
T Consensus 60 S~ed~v~klk---~PR~iillvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~ 108 (487)
T KOG2653|consen 60 SLEDFVSKLK---KPRVIILLVKAGAPVDQFIEELVPYLEKGDIIIDGGNSE 108 (487)
T ss_pred CHHHHHHhcC---CCcEEEEEeeCCCcHHHHHHHHHhhcCCCCEEEeCCccc
Confidence 3455666665 37789999999998885 4555566778888 66666
No 157
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=40.21 E-value=28 Score=24.84 Aligned_cols=13 Identities=38% Similarity=0.858 Sum_probs=10.9
Q ss_pred ccEEEeCCcccee
Q psy11241 54 VSIVVGGHSHTFL 66 (148)
Q Consensus 54 iDvIlgGH~H~~~ 66 (148)
.+++++||+|...
T Consensus 123 ~~~~l~GH~H~~~ 135 (156)
T cd08165 123 PRLVLSGHTHSFC 135 (156)
T ss_pred CCEEEEcccCCCc
Confidence 5799999999754
No 158
>PF04471 Mrr_cat: Restriction endonuclease; InterPro: IPR007560 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. This entry represents Mrr, a type IV restriction endonuclease involved in the acceptance of modified foreign DNA, restricting both adenine- and cytosine-methylated DNA. Plasmids carrying HincII, HpaI, and TaqI R and M genes are severely restricted in Escherichia coli strains that are Mrr+ []. Mrr appears to be the final effector of the bacterial SOS response, which is not only a vital reply to DNA damage but also constitutes an essential mechanism for the generation of genetic variability that in turn fuels adaptation and resistance development in bacterial populations []. Mrr possesses a cleavage domain that is similar to that found in type II restriction enzymes, however it has an unusual glutamine residue at the central position of the (D/E)-(D/E)XK hallmark of the active site [].; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0009307 DNA restriction-modification system; PDB: 1Y88_A.
Probab=40.20 E-value=73 Score=20.50 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCchhh-HHHHhhCCCcc
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVDLD-QTVAKASKHVS 55 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d-~~la~~~~~iD 55 (148)
...++..+..++.. +++..+++|-.++... ++.|++..+|.
T Consensus 63 ~~~v~~~~~~~~~~-~~~~~iivt~~~~t~~a~~~~~~~~~I~ 104 (115)
T PF04471_consen 63 VKAVRQLIGKAKKY-GADKGIIVTSSGFTPEAKEFAEKFKNIE 104 (115)
T ss_dssp HHHHHHHHHHHGGG-T-SEEEEE-SSEE-HHHHHHHH------
T ss_pred hHHHHHHhhhhhcc-CCCEEEEEECCcCCHHHHHHHHhhcccc
Confidence 45677777777776 8999999999998754 56666655554
No 159
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.08 E-value=79 Score=26.91 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=28.8
Q ss_pred HHHHHH---HHHhhcCCCCEEEEEeCCCch-hhHHHHhhCCCccEEEeCCccce
Q psy11241 16 SVNKEA---DRLVREDKVDIVIALSHAGVD-LDQTVAKASKHVSIVVGGHSHTF 65 (148)
Q Consensus 16 ~~~~~v---~~lr~~~g~D~iI~lsH~g~~-~d~~la~~~~~iDvIlgGH~H~~ 65 (148)
.+...+ ..+|+. .++..|+++-.-.. .-.++++..+++|+|++|..-..
T Consensus 78 k~~~~i~~~~~~k~~-~p~~~ivvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~ 130 (467)
T PRK14329 78 KVRKRLEKFNALKKK-NPKLIVGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLD 130 (467)
T ss_pred HHHHHHHHHHHHHhh-CCCcEEEEECChhcCcHHHHHhcCCCceEEECCCCHHH
Confidence 444455 444555 57776666544222 22456666677999999875543
No 160
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=39.19 E-value=47 Score=23.56 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=25.4
Q ss_pred HHhhcCCCCEEEEEeCCCchh---h---HHHHhhC--CCccEEEeCCccc
Q psy11241 23 RLVREDKVDIVIALSHAGVDL---D---QTVAKAS--KHVSIVVGGHSHT 64 (148)
Q Consensus 23 ~lr~~~g~D~iI~lsH~g~~~---d---~~la~~~--~~iDvIlgGH~H~ 64 (148)
.|... |+|-|+.+.|..+.. + ..|++.+ .+.|+||.||+..
T Consensus 53 ~l~~~-G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~ 101 (164)
T PF01012_consen 53 ALAKY-GADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSF 101 (164)
T ss_dssp HHHST-TESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHH
T ss_pred hhhhc-CCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 34445 899999999986642 1 2233322 4689999999864
No 161
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=38.93 E-value=69 Score=23.31 Aligned_cols=46 Identities=24% Similarity=0.441 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCchh-----------------hHHHHhhCCCccEEEeC
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVDL-----------------DQTVAKASKHVSIVVGG 60 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~-----------------d~~la~~~~~iDvIlgG 60 (148)
.+.+.+.+..+++. .+++||+..-.|..- .+.||+....+-.++.|
T Consensus 100 ~~~i~~~l~~l~~~-~~~lViVsnEVG~GiVP~~~~~R~yrd~lG~lnq~lA~~Ad~V~~vv~G 162 (167)
T PF02283_consen 100 LEEIERLLEALRER-NADLVIVSNEVGWGIVPMDPLTRRYRDLLGRLNQRLAARADEVYLVVAG 162 (167)
T ss_dssp HHHHHHHHHHHHH---SEEEEEEE---SS---SSHHHHHHHHHHHHHHHHHHHH-SEEEEEETT
T ss_pred HHHHHHHHHHHHcc-CCCEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCEEEEEeCC
Confidence 45667777888776 689999988777541 25788888888888887
No 162
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=38.90 E-value=75 Score=27.84 Aligned_cols=88 Identities=13% Similarity=0.196 Sum_probs=57.8
Q ss_pred EechHHHHHHHHHHHhhcCCCCEEEEEeCCCc----hhhHHHHhhCCC--ccEEEeCCccceecCCCCCCCCCCCCCCCC
Q psy11241 10 ILDEITSVNKEADRLVREDKVDIVIALSHAGV----DLDQTVAKASKH--VSIVVGGHSHTFLYSGKPPCPHDKPKGPYP 83 (148)
Q Consensus 10 f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~----~~d~~la~~~~~--iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p 83 (148)
-.++-+.++.++++++..-++|+||++--.|+ +...+|=+.+.| .+.++-||+|.-...|.. +
T Consensus 68 ~~~~~~~iq~~~~~i~~~t~a~fIVV~d~~gIR~~HP~perIGkp~~ggde~a~~~G~~yvS~~kGsl---g-------- 136 (537)
T COG3290 68 NKDQEARIQAIAEAIRSITDADFIVVGDMKGIRLTHPNPERIGKPFQGGDEEAALAGESYVSTAKGSL---G-------- 136 (537)
T ss_pred cCCcchhHHHHHHHHHhhcCceEEEEecCCcceecCCChHHhCCCccCCCHHHHhCCceeEEEeeccc---h--------
Confidence 34455788889999988768999999876664 344566665544 457889999887754321 1
Q ss_pred EEEecCCCCceEEEEecCccccceeEEEEEEe
Q psy11241 84 IVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYN 115 (148)
Q Consensus 84 ~~v~~~~~g~~~~vvq~g~~g~~lg~l~l~~~ 115 (148)
..+.. .++|.... |+-+|.+.+-+.
T Consensus 137 ~s~R~-----~~PI~d~~--g~~IGvVsVG~~ 161 (537)
T COG3290 137 KSLRA-----KVPIFDED--GKQIGVVSVGYL 161 (537)
T ss_pred hhhee-----ecceECCC--CCEEEEEEEeeE
Confidence 11212 56665433 778888877764
No 163
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=38.69 E-value=44 Score=27.66 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=42.4
Q ss_pred CeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCC-chhhHHHHhhC----CCccEEEeCCc
Q psy11241 7 NLRILDEITSVNKEADRLVREDKVDIVIALSHAG-VDLDQTVAKAS----KHVSIVVGGHS 62 (148)
Q Consensus 7 ~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g-~~~d~~la~~~----~~iDvIlgGH~ 62 (148)
|++-.+-++++.+.++-.|++ ++|++.++.... ++..+-+|... +.-|++..+|.
T Consensus 64 GVEPNP~~~Tv~kaV~i~kee-~idflLAVGGGSViD~tK~IAa~a~y~GD~Wdi~~~~~~ 123 (384)
T COG1979 64 GVEPNPRLETLMKAVEICKEE-NIDFLLAVGGGSVIDGTKFIAAAAKYDGDPWDILTKKHK 123 (384)
T ss_pred CCCCCchHHHHHHHHHHHHHc-CceEEEEecCcchhhhHHHHHhhcccCCChHHHHhcCCc
Confidence 555566789999999999998 999999997754 45567777654 33788888876
No 164
>PHA02546 47 endonuclease subunit; Provisional
Probab=37.95 E-value=43 Score=27.12 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCC---Cc------hhhHHH-HhhCCCccEEEeCCcccee
Q psy11241 16 SVNKEADRLVREDKVDIVIALSHA---GV------DLDQTV-AKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH~---g~------~~d~~l-a~~~~~iDvIlgGH~H~~~ 66 (148)
.+++..+.++.. .+. |+|+|+ |. ..+..+ ...++++|.+..||-|...
T Consensus 135 ~~~~~~~~l~~~-~~~--ill~H~~v~g~~~~~g~~~~~~~~~~~~~~fdyvALGHiH~~~ 192 (340)
T PHA02546 135 NTEEILEFIKNS-KSE--YCVGHWELNGFYFYKGMKSDHGLDPDFLKKYKQVWSGHFHTIS 192 (340)
T ss_pred HHHHHHHHhccC-CCc--EEEEeeEEecCcccCCCccccCCChhHhccCCEEeecccccCc
Confidence 344555666554 454 567785 21 111111 1234779999999999764
No 165
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=37.79 E-value=72 Score=23.58 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=20.5
Q ss_pred CCCEEEE-----EeCCCchhh---HHHHhhC-CCccEEEeCCc
Q psy11241 29 KVDIVIA-----LSHAGVDLD---QTVAKAS-KHVSIVVGGHS 62 (148)
Q Consensus 29 g~D~iI~-----lsH~g~~~d---~~la~~~-~~iDvIlgGH~ 62 (148)
.+|+||+ ..+.|+-.. .++.++- +..++|++|+.
T Consensus 97 ~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~ 139 (173)
T TIGR00708 97 ELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRG 139 (173)
T ss_pred CCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCC
Confidence 6999986 223343222 2333333 56999999985
No 166
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=37.40 E-value=33 Score=28.66 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCchh
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVDL 43 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~ 43 (148)
+.+.-..++.|.++ |+- ||++||+|-+.
T Consensus 33 I~~~lpTI~~l~~~-gak-vVl~sH~GRPk 60 (384)
T PF00162_consen 33 IRAALPTIKYLLEK-GAK-VVLMSHLGRPK 60 (384)
T ss_dssp HHHHHHHHHHHHHT-TEE-EEEE---SSTT
T ss_pred HHHHHHHHHHHHhc-CCe-EEEEeccCCcc
Confidence 55666677888887 665 99999999883
No 167
>PRK15138 aldehyde reductase; Provisional
Probab=37.31 E-value=41 Score=27.85 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=27.6
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCC-chhhHHHH
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAG-VDLDQTVA 48 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g-~~~d~~la 48 (148)
....+.+.+.++..|+. +||+||++.-.. ++.-+.+|
T Consensus 68 ~p~~~~v~~~~~~~~~~-~~D~IIaiGGGS~iD~AK~ia 105 (387)
T PRK15138 68 NPTYETLMKAVKLVREE-KITFLLAVGGGSVLDGTKFIA 105 (387)
T ss_pred CCCHHHHHHHHHHHHHc-CCCEEEEeCChHHHHHHHHHH
Confidence 45678899999999988 899999998643 34344444
No 168
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=37.26 E-value=69 Score=27.30 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH---HHHhhCCCccEEE-eCCcc
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHAGVDLDQ---TVAKASKHVSIVV-GGHSH 63 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~---~la~~~~~iDvIl-gGH~H 63 (148)
|..++++.|+.|+. +-.|++|--.|-+.|. .|..-+..=|+|+ ||.+|
T Consensus 54 ~~~sieefV~~Le~---PRkI~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~ 105 (473)
T COG0362 54 PAYSIEEFVASLEK---PRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSH 105 (473)
T ss_pred ccCcHHHHHHHhcC---CceEEEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcC
Confidence 44677888888863 6789999999976664 3444567778988 77777
No 169
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=37.14 E-value=1.3e+02 Score=21.60 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHHhhcCCCCEEEEEeCCCchh---h---HHHHhhC--CCccEEEeCCccc
Q psy11241 22 DRLVREDKVDIVIALSHAGVDL---D---QTVAKAS--KHVSIVVGGHSHT 64 (148)
Q Consensus 22 ~~lr~~~g~D~iI~lsH~g~~~---d---~~la~~~--~~iDvIlgGH~H~ 64 (148)
..+..- |+|-|+++.|..+.. + ..|++.+ .+.|+||.||+..
T Consensus 53 ~~~~~~-Gad~v~~~~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 53 REALAM-GADKVLLVEDPALAGYDPEATAKALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHh-CCCEEEEEecCcccCCChHHHHHHHHHHHHHhCCCEEEECCccc
Confidence 334444 899999999865432 1 2233221 3589999999986
No 170
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=37.07 E-value=1.2e+02 Score=19.82 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=7.7
Q ss_pred CCccEEEeCCcc
Q psy11241 52 KHVSIVVGGHSH 63 (148)
Q Consensus 52 ~~iDvIlgGH~H 63 (148)
.++|+|+-|+.+
T Consensus 84 ~~~dllviG~~~ 95 (124)
T cd01987 84 HNVTQIVVGKSR 95 (124)
T ss_pred cCCCEEEeCCCC
Confidence 468887755543
No 171
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=36.82 E-value=44 Score=28.40 Aligned_cols=29 Identities=24% Similarity=0.129 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCCch
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHAGVD 42 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~ 42 (148)
..+.+++.+++||++ |+|.||+.|-+|.-
T Consensus 321 a~~~g~eIa~~Lk~d-gVDAVILTstCgtC 349 (431)
T TIGR01918 321 SKQFAKEFVVELKQG-GVDAVILTSTUGTC 349 (431)
T ss_pred HHHHHHHHHHHHHHc-CCCEEEEcCCCCcc
Confidence 346788899999998 99999999998865
No 172
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=36.36 E-value=1.2e+02 Score=23.81 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=32.6
Q ss_pred CCCCCCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEE
Q psy11241 2 IASTGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIV 57 (148)
Q Consensus 2 ~s~~~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvI 57 (148)
+++.+||.|....+.++..+++||+. |+-+-+.+-- ..+..+.|.++ |.|.|
T Consensus 98 ~TTegGldv~~~~~~l~~~i~~L~~~-gIrvSLFiDP--~~~qi~~A~~~-Gad~V 149 (239)
T PF03740_consen 98 LTTEGGLDVAGNRDRLKPVIKRLKDA-GIRVSLFIDP--DPEQIEAAKEL-GADRV 149 (239)
T ss_dssp BSTTSSB-TCGGHHHHHHHHHHHHHT-T-EEEEEE-S---HHHHHHHHHT-T-SEE
T ss_pred cCCCcCChhhcCHHHHHHHHHHHHhC-CCEEEEEeCC--CHHHHHHHHHc-CCCEE
Confidence 45677999998899999999999998 7755444432 23344555554 45544
No 173
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=36.02 E-value=88 Score=23.05 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCC--CCEEEEEeCCCchhhHHHHhhCCCccEEE
Q psy11241 15 TSVNKEADRLVREDK--VDIVIALSHAGVDLDQTVAKASKHVSIVV 58 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g--~D~iI~lsH~g~~~d~~la~~~~~iDvIl 58 (148)
+++.+.+.+||++ | +|+|| +|.|+.+..-|-.-+|++=+|.
T Consensus 51 ~av~~a~~~L~~~-Gf~PDvI~--~H~GWGe~Lflkdv~P~a~li~ 93 (171)
T PF12000_consen 51 QAVARAARQLRAQ-GFVPDVII--AHPGWGETLFLKDVFPDAPLIG 93 (171)
T ss_pred HHHHHHHHHHHHc-CCCCCEEE--EcCCcchhhhHHHhCCCCcEEE
Confidence 3455677788888 6 58775 5777776665655567765554
No 174
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=35.99 E-value=98 Score=22.43 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCchh---hHHHHhhC--CCccEEEeC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDL---DQTVAKAS--KHVSIVVGG 60 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~---d~~la~~~--~~iDvIlgG 60 (148)
..-+++.+.++.|+++ -+.+-|+-+|.|+-. +..+++.+ .+.|+|+.|
T Consensus 54 ~~~~~~~~~~~~l~~~-yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 54 AKPEVLEKAAERLRAR-YPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVG 106 (171)
T ss_pred CCHHHHHHHHHHHHHH-CCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 3346677777788877 577888877776643 23344443 457888765
No 175
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.88 E-value=30 Score=27.70 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=10.0
Q ss_pred eEEEEecCc----cccceeEEE
Q psy11241 94 QVLVVQAAA----YSRYLGLIH 111 (148)
Q Consensus 94 ~~~vvq~g~----~g~~lg~l~ 111 (148)
+.+++-.|- .|+.+|.++
T Consensus 222 gavvIDvGin~~~~gkl~GDVd 243 (281)
T PRK14183 222 GAIVIDIGINRTEDGRLVGDVD 243 (281)
T ss_pred CcEEEEeeccccCCCCeECCcc
Confidence 466666662 355666555
No 176
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.88 E-value=35 Score=27.38 Aligned_cols=34 Identities=6% Similarity=0.167 Sum_probs=17.6
Q ss_pred HHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeC
Q psy11241 21 ADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGG 60 (148)
Q Consensus 21 v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgG 60 (148)
+..|..+ +|-+.++-++. +.|.+.+...|+|+.+
T Consensus 176 a~lL~~~-~atVtv~hs~T-----~~l~~~~~~ADIvi~a 209 (285)
T PRK10792 176 SLELLLA-GCTVTVCHRFT-----KNLRHHVRNADLLVVA 209 (285)
T ss_pred HHHHHHC-CCeEEEEECCC-----CCHHHHHhhCCEEEEc
Confidence 3334444 55555554442 2355555667777743
No 177
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=35.66 E-value=82 Score=23.44 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=20.5
Q ss_pred CCCEEEE-----EeCCCchhhH---HHHhhC-CCccEEEeCCc
Q psy11241 29 KVDIVIA-----LSHAGVDLDQ---TVAKAS-KHVSIVVGGHS 62 (148)
Q Consensus 29 g~D~iI~-----lsH~g~~~d~---~la~~~-~~iDvIlgGH~ 62 (148)
.+|+||+ .-+.|+-... ++.++- ++.++|++|+.
T Consensus 115 ~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~ 157 (178)
T PRK07414 115 RYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPE 157 (178)
T ss_pred CCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCC
Confidence 6999986 2233432222 333333 56999999985
No 178
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=35.46 E-value=48 Score=26.27 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEe--C
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALS--H 38 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~ls--H 38 (148)
.++.+++.+++++. ++|+||++| |
T Consensus 34 ~~a~~~~~~~v~~~-~PD~iVvis~dH 59 (276)
T cd07949 34 FDGFPPVHDWLEKA-KPDVAVVFYNDH 59 (276)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEECCcH
Confidence 56677777777777 799999999 8
No 179
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=35.26 E-value=53 Score=27.63 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCch
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVD 42 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~ 42 (148)
+.++-..++.|-++ |+ .||++||+|-+
T Consensus 32 I~a~lpTI~~l~~~-ga-kvvl~SHlGRP 58 (397)
T cd00318 32 IRAALPTIKYLLEQ-GA-KVVLLSHLGRP 58 (397)
T ss_pred HHHHHHHHHHHHHC-CC-eEEEEEecCCC
Confidence 44455566666666 77 78999999976
No 180
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=34.98 E-value=44 Score=27.90 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=23.7
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
.+..+.+.+.++.+|+. ++|+||++.-..
T Consensus 63 ~p~~~~v~~~~~~~~~~-~~D~IIaiGGGS 91 (414)
T cd08190 63 EPTDESFKDAIAFAKKG-QFDAFVAVGGGS 91 (414)
T ss_pred CcCHHHHHHHHHHHHhc-CCCEEEEeCCcc
Confidence 45678888899999988 899999997654
No 181
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=34.74 E-value=56 Score=20.33 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=19.6
Q ss_pred cccceeEEEEEEecCCCEEEEeceEEecCCCCCCCHHHHHHh
Q psy11241 103 YSRYLGLIHLQYNDKGNIVSWRGDPILLDKHIQEGNIVVLFA 144 (148)
Q Consensus 103 ~g~~lg~l~l~~~~~g~v~~~~~~~i~~~~~~~~D~~i~~~v 144 (148)
....-..+.|+++++|+|+.+. .+.-+..-.-|.++.+.|
T Consensus 23 ~~~~~~~V~i~i~~dG~v~~~~--i~~sSG~~~~D~av~~ai 62 (85)
T PF13103_consen 23 SGGLSVTVRITIDPDGRVISVR--IVKSSGNPAFDAAVRRAI 62 (85)
T ss_dssp -TT--EEEEEEE-TTSBEEEEE--EEE--S-HHHHHHHHHHH
T ss_pred CCCcEEEEEEEECCCCCEEEEE--EecCCCCHHHHHHHHHHH
Confidence 4455567889999999986433 333333333344444444
No 182
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=34.70 E-value=44 Score=27.21 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=24.2
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
....+.+.+.++.+|+. +||+||++.-..
T Consensus 66 ~p~~~~v~~~~~~~~~~-~~D~IIavGGGS 94 (357)
T cd08181 66 NPSLETIMEAVEIAKKF-NADFVIGIGGGS 94 (357)
T ss_pred CcCHHHHHHHHHHHHhc-CCCEEEEeCCch
Confidence 35678899999999988 899999998754
No 183
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.51 E-value=99 Score=26.21 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=22.7
Q ss_pred HHHHhhcCCCCEEEEEeCC--CchhhHHHHhhCCCccEEEeCCcc
Q psy11241 21 ADRLVREDKVDIVIALSHA--GVDLDQTVAKASKHVSIVVGGHSH 63 (148)
Q Consensus 21 v~~lr~~~g~D~iI~lsH~--g~~~d~~la~~~~~iDvIlgGH~H 63 (148)
+.++|.. .++++|+++-. .... .++.++.+.+|+|++|+.=
T Consensus 73 ~~~~k~~-~p~~~ivv~GC~a~~~~-e~l~~~~~~vD~vvg~~~~ 115 (449)
T PRK14332 73 LGYLKKR-NPNLVIGVLGCMAQNLG-DDLFHQELPLDLVVGPDNY 115 (449)
T ss_pred HHHHHHh-CCCCEEEEECcccccch-HHHhhccCCceEEECCCCH
Confidence 3445554 56765655443 2222 3454444559999988654
No 184
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=34.50 E-value=1e+02 Score=20.91 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCchh-------h----HHHHhhCCCccEEEeCC
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVDL-------D----QTVAKASKHVSIVVGGH 61 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~-------d----~~la~~~~~iDvIlgGH 61 (148)
-+.+...+++|+.. |+|.|-+-|=+-... - ..|.+++ |+.+|.|-|
T Consensus 51 g~~~~~~~~~l~~~-~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~-gi~VV~GTH 107 (107)
T PF08821_consen 51 GRKLVRRIKKLKKN-GADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKF-GIEVVEGTH 107 (107)
T ss_pred hhHHHHHHHHHHHC-CCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHh-CCCEeeecC
Confidence 45667778888866 899665544332211 1 2233333 888888866
No 185
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.09 E-value=47 Score=28.25 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCch
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVD 42 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~ 42 (148)
.....+++.+++||++ |+|.||+.|-+|.-
T Consensus 320 ~a~~~g~eIa~~Lk~d-gVDAvILtstCgtC 349 (431)
T TIGR01917 320 NSKQFAKEFSKELLAA-GVDAVILTSTUGTC 349 (431)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEEcCCCCcc
Confidence 3445677889999998 99999999998865
No 186
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=34.03 E-value=1.3e+02 Score=21.88 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCCCEEEE-----EeCCCchhhH---HHHh-hCCCccEEEeCCc
Q psy11241 28 DKVDIVIA-----LSHAGVDLDQ---TVAK-ASKHVSIVVGGHS 62 (148)
Q Consensus 28 ~g~D~iI~-----lsH~g~~~d~---~la~-~~~~iDvIlgGH~ 62 (148)
..+|++|+ .-+.|+-... ++.+ +-+..++|++|+.
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~ 137 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRN 137 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 36999986 2244443222 3333 3467999999985
No 187
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=33.88 E-value=86 Score=23.60 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=20.4
Q ss_pred CCCEEEE-----EeCCCchhhH---HHHhhC-CCccEEEeCCc
Q psy11241 29 KVDIVIA-----LSHAGVDLDQ---TVAKAS-KHVSIVVGGHS 62 (148)
Q Consensus 29 g~D~iI~-----lsH~g~~~d~---~la~~~-~~iDvIlgGH~ 62 (148)
.+|+||+ .-+.|+-... ++.++- ++.++|++|+.
T Consensus 115 ~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~ 157 (191)
T PRK05986 115 SYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRG 157 (191)
T ss_pred CCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCC
Confidence 6999986 2333432222 333333 56999999984
No 188
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=33.86 E-value=1.2e+02 Score=23.75 Aligned_cols=52 Identities=10% Similarity=0.173 Sum_probs=36.4
Q ss_pred CCCCCCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEE
Q psy11241 2 IASTGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIV 57 (148)
Q Consensus 2 ~s~~~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvI 57 (148)
+++-+||.|....+.++..+++||+. |+-+=..+ ....+..+.|+++ |.|.|
T Consensus 100 ~TTegGldv~~~~~~l~~~i~~L~~~-gIrVSLFi--dP~~~qi~~A~~~-GAd~V 151 (239)
T PRK05265 100 LTTEGGLDVAGQFDKLKPAIARLKDA-GIRVSLFI--DPDPEQIEAAAEV-GADRI 151 (239)
T ss_pred ccCCccchhhcCHHHHHHHHHHHHHC-CCEEEEEe--CCCHHHHHHHHHh-CcCEE
Confidence 45567999988889999999999998 76544444 3333445666665 56654
No 189
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=33.83 E-value=48 Score=27.68 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=24.8
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
.++++.+.+.++.+|+. +||.||++.-..
T Consensus 69 ~P~~~~v~~~~~~~~~~-~~D~iIalGGGS 97 (377)
T COG1454 69 EPTIETVEAGAEVAREF-GPDTIIALGGGS 97 (377)
T ss_pred CCCHHHHHHHHHHHHhc-CCCEEEEeCCcc
Confidence 45788999999999998 899999997754
No 190
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=33.69 E-value=1.4e+02 Score=21.13 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEe
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG 59 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlg 59 (148)
|..+.+.++...+.+. .+|.-|++...|+.... .|.++|||=.-+.
T Consensus 40 dy~~~a~~va~~V~~~-~~d~GIliCgtGiG~~i-aANK~~GIrAa~~ 85 (140)
T PF02502_consen 40 DYPDFAEKVAEAVASG-EADRGILICGTGIGMSI-AANKVPGIRAALC 85 (140)
T ss_dssp -HHHHHHHHHHHHHTT-SSSEEEEEESSSHHHHH-HHHTSTT--EEE-
T ss_pred CHHHHHHHHHHHHHcc-cCCeEEEEcCCChhhhh-HhhcCCCEEEEee
Confidence 4566777777787776 69999999999977442 4567788755444
No 191
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=33.13 E-value=1.3e+02 Score=19.77 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCchh-h----HHHHhhCC-CccEEEeCC
Q psy11241 16 SVNKEADRLVREDKVDIVIALSHAGVDL-D----QTVAKASK-HVSIVVGGH 61 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH~g~~~-d----~~la~~~~-~iDvIlgGH 61 (148)
.....+..++.. ++|+|.+-+...... + ..+.+..| ++-+++||.
T Consensus 38 ~~~~~~~~i~~~-~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~ 88 (125)
T cd02065 38 PPEEIVEAAKEE-DADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGA 88 (125)
T ss_pred CHHHHHHHHHHc-CCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 344455555555 688665554443321 2 23334456 788888884
No 192
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=33.08 E-value=60 Score=25.64 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEe
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALS 37 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~ls 37 (148)
.+++.+++.+++++. ++|+||+++
T Consensus 31 ~~~a~~~~~~~v~~~-~pD~ivvi~ 54 (277)
T cd07368 31 CWHAYAICAERLAAL-QVTSVVVIG 54 (277)
T ss_pred HHHHHHHHHHHHHHc-CCCEEEEEc
Confidence 345666677777777 899999997
No 193
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=32.78 E-value=1.3e+02 Score=20.66 Aligned_cols=50 Identities=14% Similarity=0.330 Sum_probs=32.8
Q ss_pred EEecCccccceeEEEEEEecCCCEEEEeceEEecCCCCCCCHHHHHHhHhhC
Q psy11241 97 VVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDKHIQEGNIVVLFAKRFR 148 (148)
Q Consensus 97 vvq~g~~g~~lg~l~l~~~~~g~v~~~~~~~i~~~~~~~~D~~i~~~v~~~~ 148 (148)
+.++...-.+=|.+.+.|.+.|.-+ ..+-+.+++.....+-|+.++++|+
T Consensus 11 ~s~p~e~lef~gvmrf~~qd~~~k~--atK~VrVsS~~tt~eVI~~LLeKFk 60 (112)
T cd01782 11 LSYPTEDLEFHGVMRFYFQDGGEKV--ATKCIRVSSTATTRDVIDTLSEKFR 60 (112)
T ss_pred ecCCCcccEEeeEEEEEEEcCCCcE--EEEEEEEecCCCHHHHHHHHHHHhc
Confidence 4567777788899999997654322 2234445555666677777887774
No 194
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=32.72 E-value=53 Score=27.14 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC-chhhHHH
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG-VDLDQTV 47 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g-~~~d~~l 47 (148)
...+.+.+.++..|+. +||+||++.-.. ++..+.+
T Consensus 72 p~~~~v~~~~~~~~~~-~~D~IiaiGGGS~iD~AK~i 107 (383)
T PRK09860 72 PTTENVAAGLKLLKEN-NCDSVISLGGGSPHDCAKGI 107 (383)
T ss_pred cCHHHHHHHHHHHHHc-CCCEEEEeCCchHHHHHHHH
Confidence 4578899999999987 899999997643 3333433
No 195
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=32.55 E-value=38 Score=24.31 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=11.0
Q ss_pred CccEEEeCCcccee
Q psy11241 53 HVSIVVGGHSHTFL 66 (148)
Q Consensus 53 ~iDvIlgGH~H~~~ 66 (148)
..|++|.||.|-.+
T Consensus 122 ~~~~~i~GH~HP~~ 135 (172)
T cd07391 122 DAELVIIGHEHPAI 135 (172)
T ss_pred CCCEEEEccCCCcE
Confidence 46889999999544
No 196
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.53 E-value=1.4e+02 Score=25.13 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=14.0
Q ss_pred HHHHHHHHhhcCCCCEEEEEe
Q psy11241 17 VNKEADRLVREDKVDIVIALS 37 (148)
Q Consensus 17 ~~~~v~~lr~~~g~D~iI~ls 37 (148)
..+.++.|-+. |+|+|++=+
T Consensus 154 ~~~~v~~lv~a-GvDvI~iD~ 173 (404)
T PRK06843 154 TIERVEELVKA-HVDILVIDS 173 (404)
T ss_pred HHHHHHHHHhc-CCCEEEEEC
Confidence 44566777766 899988654
No 197
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=32.48 E-value=68 Score=27.18 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCch
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVD 42 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~ 42 (148)
+.+.-..++.|-++ |+-.||++||+|-+
T Consensus 41 I~~~lpTI~~L~~~-gak~vvl~SHlGRP 68 (417)
T PTZ00005 41 IKATLPTIKYLLEQ-GAKSVVLMSHLGRP 68 (417)
T ss_pred HHHHHHHHHHHHHC-CCCEEEEEecCCCC
Confidence 44455566666666 78789999999875
No 198
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=32.44 E-value=61 Score=25.67 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEe
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALS 37 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~ls 37 (148)
..+++.+++.+++++. ++|+||+++
T Consensus 32 ~~~~a~~~~~~~i~~~-~PD~iVvi~ 56 (277)
T cd07950 32 PIFDGYEPVKQWLAEQ-KPDVLFMVY 56 (277)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEc
Confidence 3456677777778777 799999999
No 199
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=32.25 E-value=53 Score=27.31 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
...+.+.+.++..|+. +||+||++.-..
T Consensus 90 P~~~~v~~~~~~~r~~-~~D~IiavGGGS 117 (395)
T PRK15454 90 PCITDVCAAVAQLRES-GCDGVIAFGGGS 117 (395)
T ss_pred cCHHHHHHHHHHHHhc-CcCEEEEeCChH
Confidence 3467889999999988 899999997653
No 200
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=32.21 E-value=98 Score=20.62 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCch-------hhHHHHhhC---CCccEEEeCCc
Q psy11241 17 VNKEADRLVREDKVDIVIALSHAGVD-------LDQTVAKAS---KHVSIVVGGHS 62 (148)
Q Consensus 17 ~~~~v~~lr~~~g~D~iI~lsH~g~~-------~d~~la~~~---~~iDvIlgGH~ 62 (148)
.-..++.||..+|+|.|-.-|-+-.+ ...++|+.. -+|-+++|-|.
T Consensus 44 vpn~~k~lk~~egaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv~gTH~ 99 (101)
T COG5561 44 VPNQIKQLKGKEGAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVVMGTHF 99 (101)
T ss_pred hHHHHHHHhhccccceeeeeeeeeccCCCCCccCHHHHHHHHHHHhCCcEEeecce
Confidence 45678888888899998777665433 124555433 47889998774
No 201
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=32.14 E-value=1.2e+02 Score=24.51 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
...+.+.+.++.+|+. +||+||++.-..
T Consensus 61 p~~~~v~~~~~~~~~~-~~D~IIavGGGS 88 (351)
T cd08170 61 CTRAEIERLAEIARDN-GADVVIGIGGGK 88 (351)
T ss_pred CCHHHHHHHHHHHhhc-CCCEEEEecCch
Confidence 4567777777777776 788888887543
No 202
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=32.08 E-value=1.6e+02 Score=19.68 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=22.7
Q ss_pred CCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCcc
Q psy11241 29 KVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSH 63 (148)
Q Consensus 29 g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H 63 (148)
++..||++|..|.. -+.|++.-|.+.++..-++.
T Consensus 16 ~ak~Ivv~T~sG~t-a~~isk~RP~~pIiavt~~~ 49 (117)
T PF02887_consen 16 NAKAIVVFTESGRT-ARLISKYRPKVPIIAVTPNE 49 (117)
T ss_dssp TESEEEEE-SSSHH-HHHHHHT-TSSEEEEEESSH
T ss_pred CCCEEEEECCCchH-HHHHHhhCCCCeEEEEcCcH
Confidence 47799999999954 45566666777777655544
No 203
>KOG2310|consensus
Probab=31.95 E-value=30 Score=30.47 Aligned_cols=42 Identities=21% Similarity=0.502 Sum_probs=28.3
Q ss_pred ccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecC-----------ccccceeEEEEE
Q psy11241 54 VSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAA-----------AYSRYLGLIHLQ 113 (148)
Q Consensus 54 iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g-----------~~g~~lg~l~l~ 113 (148)
+|+||=||.|.-... |.. |+. .+-.|.|+| +.-+++|.|+|.
T Consensus 239 ~DlviWGHEHEC~i~--------------p~~--n~~--~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~Ik 291 (646)
T KOG2310|consen 239 LDLVIWGHEHECKID--------------PQY--NAI--QGFYILQPGSSVATSLSPGEAKPKHVGLLRIK 291 (646)
T ss_pred hhheeeccccccccC--------------ccc--ccc--cceeeecCCCccccccCcccccCceEEEEEec
Confidence 899999999988754 111 211 145555555 456789999987
No 204
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=31.92 E-value=1.2e+02 Score=22.28 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCchh--hHHHHhhC--CCccEEEeC
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVDL--DQTVAKAS--KHVSIVVGG 60 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~--d~~la~~~--~~iDvIlgG 60 (148)
-+++.+.++.|+++ -+.+.|+-.|..+.. +.++++.+ .+.|+++-|
T Consensus 58 ~~v~~~~~~~l~~~-yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~Vg 107 (177)
T TIGR00696 58 PDVLQQLKVKLIKE-YPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVG 107 (177)
T ss_pred HHHHHHHHHHHHHH-CCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEE
Confidence 35677778888877 456655555544432 23455544 457777765
No 205
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=31.83 E-value=63 Score=25.65 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEE-eC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIAL-SH 38 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~l-sH 38 (148)
..+++.+++.+++++. ++|+||++ +|
T Consensus 32 ~~~~a~~~i~~~v~~~-~PDviVvi~sd 58 (279)
T PRK13365 32 PLFDGYEPVAAWLAEQ-KADVLVFFYND 58 (279)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEcCc
Confidence 3456667777777777 79999999 54
No 206
>COG2237 Predicted membrane protein [Function unknown]
Probab=31.75 E-value=51 Score=27.37 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=31.0
Q ss_pred CCCCCeEEechHHHHHHHHHHHhhcCCCCEEEEEeC---C-CchhhHHHHhhC
Q psy11241 3 ASTGNLRILDEITSVNKEADRLVREDKVDIVIALSH---A-GVDLDQTVAKAS 51 (148)
Q Consensus 3 s~~~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH---~-g~~~d~~la~~~ 51 (148)
+.|++=.+.-. -++-+.-++||++ |-|+.|++-- . |...|+++++++
T Consensus 40 AdPeDSD~Nal-f~alkiydeLk~~-geDveIA~vsG~~~vgv~sd~~l~~ql 90 (364)
T COG2237 40 ADPEDSDVNAL-FAALKIYDELKAK-GEDVEIAVVSGDKDVGVESDLKLSEQL 90 (364)
T ss_pred CCCccccHHHH-HHHHHHHHHHhcc-CCceEEEEEecCCCcchhhHHHHHHHH
Confidence 45665555334 4455567999998 7888887733 2 555678888775
No 207
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=31.75 E-value=1.4e+02 Score=23.40 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=24.0
Q ss_pred HHHHhhcCCCCEEEEEeCCCc---h---hhHHHHhhC--CCccEEEeCCcc
Q psy11241 21 ADRLVREDKVDIVIALSHAGV---D---LDQTVAKAS--KHVSIVVGGHSH 63 (148)
Q Consensus 21 v~~lr~~~g~D~iI~lsH~g~---~---~d~~la~~~--~~iDvIlgGH~H 63 (148)
+++.-+- |+|=.|+++--.+ + ....||+.+ -++|+||+|..-
T Consensus 73 lr~aLAm-GaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s 122 (256)
T PRK03359 73 RKDVLSR-GPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGS 122 (256)
T ss_pred HHHHHHc-CCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 3333344 7888888864322 1 123444432 369999999643
No 208
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=31.22 E-value=1.2e+02 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSH 38 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH 38 (148)
..+.+.+.++.+++. ++|+||++.-
T Consensus 63 ~~~~v~~~~~~~~~~-~~d~iIaiGG 87 (339)
T cd08173 63 TYEEVEKVESSARDI-GADFVIGVGG 87 (339)
T ss_pred CHHHHHHHHHHhhhc-CCCEEEEeCC
Confidence 355666666666655 5666666654
No 209
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=31.03 E-value=1e+02 Score=24.46 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCC---CchhhHHHHhhC--CCccEEEeCCccce
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHA---GVDLDQTVAKAS--KHVSIVVGGHSHTF 65 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~---g~~~d~~la~~~--~~iDvIlgGH~H~~ 65 (148)
.-..+++..++.||.+-+.|+||+-.-. |..-.+++++.+ -|+|+|-.| .|.+
T Consensus 13 ~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~G-NH~w 70 (266)
T COG1692 13 PGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLG-NHTW 70 (266)
T ss_pred chHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecc-cccc
Confidence 3456888999999998789999997432 333345565554 689988755 3443
No 210
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.79 E-value=35 Score=27.38 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=9.9
Q ss_pred HHhhCCCccEEEe--CCcc
Q psy11241 47 VAKASKHVSIVVG--GHSH 63 (148)
Q Consensus 47 la~~~~~iDvIlg--GH~H 63 (148)
|++.+...|+++. |+.|
T Consensus 196 L~~~~~~ADIvV~AvGkp~ 214 (288)
T PRK14171 196 LSSITSKADIVVAAIGSPL 214 (288)
T ss_pred HHHHHhhCCEEEEccCCCC
Confidence 4444556777775 4444
No 211
>PF07504 FTP: Fungalysin/Thermolysin Propeptide Motif; InterPro: IPR011096 The FTP domain is found in the propeptide region of bacterial and fungal metallopeptidases belonging to MEROPS peptidase families M4 and M36 respectively. In bacteria the FTP domain is N-terminal to this entry, the PepSY domain; in fungi the M36 peptidases do not contain the PepSY domain. Propeptide swapping experiments have shown that the propeptides of the M4 and M36 families are not functionally interchangeable []. The function of the propeptide in M36 peptidases has not been described, but it is likely, as in other related peptidases, to have targeting, chaperone activity and to inhibit peptidase activity, so as to prevent premature activation [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding; PDB: 3NQY_A 3NQZ_A.
Probab=30.60 E-value=65 Score=18.28 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=13.3
Q ss_pred EEEEEEecCCCEEEEeceE
Q psy11241 109 LIHLQYNDKGNIVSWRGDP 127 (148)
Q Consensus 109 ~l~l~~~~~g~v~~~~~~~ 127 (148)
.+.+.++++|++.++.+..
T Consensus 32 ~~~v~~~~~g~v~sv~G~~ 50 (51)
T PF07504_consen 32 ELIVHVDKDGKVVSVNGDL 50 (51)
T ss_dssp -EEEEE-ETTEEEEEEEEE
T ss_pred EEEEEEcCCCCEEEEeeee
Confidence 4677788889988887764
No 212
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.33 E-value=87 Score=22.70 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=22.0
Q ss_pred EEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC--CCccEEEeCCc
Q psy11241 9 RILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS--KHVSIVVGGHS 62 (148)
Q Consensus 9 ~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~--~~iDvIlgGH~ 62 (148)
.|.+....+..+.+.| |.++.+...|...+-...+ +++ .|+|+|+||-.
T Consensus 84 ~~~~~~~~~~~~~~ll----~~~i~~~~~~~~~e~~~~i-~~~~~~G~~viVGg~~ 134 (176)
T PF06506_consen 84 GYPNIIPGLESIEELL----GVDIKIYPYDSEEEIEAAI-KQAKAEGVDVIVGGGV 134 (176)
T ss_dssp EESS-SCCHHHHHHHH----T-EEEEEEESSHHHHHHHH-HHHHHTT--EEEESHH
T ss_pred ecccccHHHHHHHHHh----CCceEEEEECCHHHHHHHH-HHHHHcCCcEEECCHH
Confidence 4444444444444444 3667777766532222222 222 67888887743
No 213
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=30.24 E-value=35 Score=23.07 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=13.0
Q ss_pred HHhhCCCccEEEeCCcc
Q psy11241 47 VAKASKHVSIVVGGHSH 63 (148)
Q Consensus 47 la~~~~~iDvIlgGH~H 63 (148)
+.++.+...++++|||=
T Consensus 57 ~~~~~~~~~i~itGHSL 73 (140)
T PF01764_consen 57 LVEKYPDYSIVITGHSL 73 (140)
T ss_dssp HHHHSTTSEEEEEEETH
T ss_pred HHhcccCccchhhccch
Confidence 44556778899999984
No 214
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=30.15 E-value=1.3e+02 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeC
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSH 38 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH 38 (148)
.+++.+.++.+++. ++|+||++.-
T Consensus 73 ~~~v~~~~~~~~~~-~~d~IIaiGG 96 (350)
T PRK00843 73 MEEVEKVEEKAKDV-NAGFLIGVGG 96 (350)
T ss_pred HHHHHHHHHHhhcc-CCCEEEEeCC
Confidence 44555555555554 4555555543
No 215
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=30.11 E-value=1.8e+02 Score=21.79 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCchh-hHHHHhhCCCccEEEeC
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVDL-DQTVAKASKHVSIVVGG 60 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~~-d~~la~~~~~iDvIlgG 60 (148)
.++...++.|++. |+.-|++++=..-.. -+.|++.+|++.++.+.
T Consensus 136 ~Tl~~ai~~L~~~-G~~~I~v~~ll~~~~gl~~l~~~~p~v~i~~~~ 181 (207)
T TIGR01091 136 GTMIAALDLLKKR-GAKKIKVLSIVAAPEGIEAVEKAHPDVDIYTAA 181 (207)
T ss_pred HHHHHHHHHHHHc-CCCEEEEEEEecCHHHHHHHHHHCCCCEEEEEE
Confidence 3677788888887 777776666554333 35688889999988774
No 216
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.07 E-value=74 Score=25.43 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=22.7
Q ss_pred HHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeCC
Q psy11241 20 EADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGH 61 (148)
Q Consensus 20 ~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH 61 (148)
++..|... ++.+.++.++. ..|.+.+...|+++++=
T Consensus 168 la~lL~~~-~atVtv~hs~t-----~~L~~~~~~ADIvI~Av 203 (279)
T PRK14178 168 MAALLLNA-DATVTICHSKT-----ENLKAELRQADILVSAA 203 (279)
T ss_pred HHHHHHhC-CCeeEEEecCh-----hHHHHHHhhCCEEEECC
Confidence 33344444 67666666553 45777778899999754
No 217
>PRK10200 putative racemase; Provisional
Probab=29.88 E-value=71 Score=24.43 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=28.9
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhh
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKA 50 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~ 50 (148)
.+|.+.+.+.++.|.+. |||+||+-.+....--..+.++
T Consensus 58 ~~~~~~l~~~~~~L~~~-g~~~iviaCNTah~~~~~l~~~ 96 (230)
T PRK10200 58 DKTGDILAEAALGLQRA-GAEGIVLCTNTMHKVADAIESR 96 (230)
T ss_pred chHHHHHHHHHHHHHHc-CCCEEEECCchHHHHHHHHHHh
Confidence 57889999999999998 9999999877543322334333
No 218
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=29.86 E-value=52 Score=27.63 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=21.8
Q ss_pred EEEEEeCCCchhh---HHHHhh-C-CCccEEEeCCcccee
Q psy11241 32 IVIALSHAGVDLD---QTVAKA-S-KHVSIVVGGHSHTFL 66 (148)
Q Consensus 32 ~iI~lsH~g~~~d---~~la~~-~-~~iDvIlgGH~H~~~ 66 (148)
+=|++.|...... .-+.+. + .++|+++-||-|...
T Consensus 202 fnIlv~Hq~~~~~~~~~~ipe~llp~~fDYValGHiH~~~ 241 (405)
T TIGR00583 202 FNLLVLHQNHAAHTSTSFLPESFIPDFFDLVIWGHEHECL 241 (405)
T ss_pred eEEEEeCceecCCCCcccCchhhhhccCcEEEeccccccc
Confidence 4577888765221 011122 2 569999999999865
No 219
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=29.69 E-value=61 Score=26.39 Aligned_cols=28 Identities=21% Similarity=0.257 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
...+.+.+.++.+|+. ++|.||++.-..
T Consensus 64 p~~~~v~~~~~~~~~~-~~d~IiaiGGGs 91 (370)
T cd08551 64 PTLSNVDAAVAAYREE-GCDGVIAVGGGS 91 (370)
T ss_pred CCHHHHHHHHHHHHhc-CCCEEEEeCCch
Confidence 4677888888888887 789888887643
No 220
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=29.64 E-value=66 Score=21.86 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=13.4
Q ss_pred CchhhHHHHhhCCCccEEEeCCcc
Q psy11241 40 GVDLDQTVAKASKHVSIVVGGHSH 63 (148)
Q Consensus 40 g~~~d~~la~~~~~iDvIlgGH~H 63 (148)
..+.=.+.|++ .++|+|+-|+.+
T Consensus 91 p~~~I~~~a~~-~~~DLIV~Gs~~ 113 (144)
T PRK15118 91 LGQVLVDAIKK-YDMDLVVCGHHQ 113 (144)
T ss_pred HHHHHHHHHHH-hCCCEEEEeCcc
Confidence 35444445555 368888866544
No 221
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=29.64 E-value=95 Score=23.04 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=21.4
Q ss_pred EEEEEeCCCchh-h--HHHH---hhCCCccEEEeCCccceec
Q psy11241 32 IVIALSHAGVDL-D--QTVA---KASKHVSIVVGGHSHTFLY 67 (148)
Q Consensus 32 ~iI~lsH~g~~~-d--~~la---~~~~~iDvIlgGH~H~~~~ 67 (148)
--|+|+|..... + .... -.....+++|-||.|..++
T Consensus 109 ~~~~LsHyP~~~~~~~~~~~r~~y~~~~~~llIHGH~H~~~~ 150 (186)
T COG4186 109 EDVYLSHYPRPGQDHPGMESRFDYLRLRVPLLIHGHLHSQFP 150 (186)
T ss_pred eEEEEEeCCCCCCCCcchhhhHHHHhccCCeEEecccccccc
Confidence 457788875442 1 1111 1124578999999998654
No 222
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=29.58 E-value=63 Score=26.50 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
...+.+.+.++.+|+. ++|+||++.-..
T Consensus 67 p~~~~v~~~~~~~~~~-~~D~IiavGGGS 94 (380)
T cd08185 67 PTTTTVMEGAALAREE-GCDFVVGLGGGS 94 (380)
T ss_pred CCHHHHHHHHHHHHHc-CCCEEEEeCCcc
Confidence 4678888888888887 899999987643
No 223
>KOG0807|consensus
Probab=28.98 E-value=1.3e+02 Score=23.86 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCchh-------------h-------HHHHhhCCCccEEEeCCccce
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVDL-------------D-------QTVAKASKHVSIVVGGHSHTF 65 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~-------------d-------~~la~~~~~iDvIlgGH~H~~ 65 (148)
.++.++++.+...+ ||++|.+---..+-. | +++|. ..+|++-||||-+..
T Consensus 33 l~~~keLi~eA~~k-~A~~iflPE~~dFi~~n~~esi~Lae~l~~k~m~~y~elar-~~nIwlSlgg~~~r~ 102 (295)
T KOG0807|consen 33 LATCKELISEAAQK-GAKLIFLPEAFDFIGQNPLESIELAEPLDGKFMEQYRELAR-SHNIWLSLGGHHERS 102 (295)
T ss_pred HHHHHHHHHHHHHc-CCCEEEcchhhhhhcCCcccceecccccChHHHHHHHHHHH-hcCeeEEeccccCCC
Confidence 56788888888888 899988754333211 1 24444 368999999997754
No 224
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=28.90 E-value=1.6e+02 Score=26.60 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=36.8
Q ss_pred eEEechH-HHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeC
Q psy11241 8 LRILDEI-TSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGG 60 (148)
Q Consensus 8 v~f~d~~-~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgG 60 (148)
+.+.|++ +.+++.+++||+. |+.+ +++|......-..+|+++ |||-++.+
T Consensus 441 i~l~D~~Rp~a~eaI~~l~~~-Gi~v-~miTGD~~~ta~~iA~~l-GI~~v~a~ 491 (675)
T TIGR01497 441 IYLKDIVKGGIKERFAQLRKM-GIKT-IMITGDNRLTAAAIAAEA-GVDDFIAE 491 (675)
T ss_pred EEecccchhHHHHHHHHHHHC-CCEE-EEEcCCCHHHHHHHHHHc-CCCEEEcC
Confidence 4566654 5899999999998 8874 677877666667888887 77755543
No 225
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=28.84 E-value=62 Score=26.70 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCCCCeEEechHHHHHHHHHHHhhcCCCCEEEEE--eC--CCchhhHHHHhhC
Q psy11241 3 ASTGNLRILDEITSVNKEADRLVREDKVDIVIAL--SH--AGVDLDQTVAKAS 51 (148)
Q Consensus 3 s~~~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~l--sH--~g~~~d~~la~~~ 51 (148)
+.|++=...-. =.+=+..++||++ |-|+-|++ .| .|...|+++++++
T Consensus 40 aDPeDSD~N~i-f~avkiydeL~~~-GedveVA~VsG~~~~~v~ad~~I~~ql 90 (344)
T PF04123_consen 40 ADPEDSDVNAI-FGAVKIYDELKAE-GEDVEVAVVSGSPDVGVEADRKIAEQL 90 (344)
T ss_pred CCcccccHHHH-HHHHHHHHHHHhc-CCCeEEEEEECCCCCchhhHHHHHHHH
Confidence 34554444333 3444566999988 77775555 22 2555688888775
No 226
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=28.71 E-value=1.2e+02 Score=19.81 Aligned_cols=59 Identities=15% Similarity=0.036 Sum_probs=35.7
Q ss_pred CeEEechH-HHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC--CCccEEEeCCcccee
Q psy11241 7 NLRILDEI-TSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS--KHVSIVVGGHSHTFL 66 (148)
Q Consensus 7 ~v~f~d~~-~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~--~~iDvIlgGH~H~~~ 66 (148)
-++|.|-. .....+++.|++. |+-..+.++..-.....++++++ .|.++-.-|++|..+
T Consensus 9 ~ltfDdg~~~~~~~~~~~l~~~-~i~at~fv~~~~~~~~~~~l~~l~~~G~ei~~H~~~H~~~ 70 (123)
T PF01522_consen 9 ALTFDDGYRDNYDRLLPLLKKY-GIPATFFVIGSWVERYPDQLRELAAAGHEIGNHGWSHPNL 70 (123)
T ss_dssp EEEEESHCHTHHHHHHHHHHHT-T--EEEEE-HHHHHHHHHHHHHHHHTT-EEEEE-SSSSCG
T ss_pred EEEEecCchhhHHHHHHHHHhc-ccceeeeecccccccccccchhHHHHHHHHHhcCCccccc
Confidence 47787765 7888888888887 77777777766444433333332 467777777777655
No 227
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=28.41 E-value=1.4e+02 Score=26.97 Aligned_cols=49 Identities=8% Similarity=0.113 Sum_probs=36.8
Q ss_pred eEEech-HHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEe
Q psy11241 8 LRILDE-ITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG 59 (148)
Q Consensus 8 v~f~d~-~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlg 59 (148)
+.+.|+ -+.+++.+++||+. |.. ++++|-.....-..+|+++ |||-++.
T Consensus 440 i~l~D~~R~~~~eai~~Lr~~-GI~-vvMiTGDn~~TA~aIA~el-GId~v~A 489 (679)
T PRK01122 440 IYLKDIVKPGIKERFAELRKM-GIK-TVMITGDNPLTAAAIAAEA-GVDDFLA 489 (679)
T ss_pred EEEeccCchhHHHHHHHHHHC-CCe-EEEECCCCHHHHHHHHHHc-CCcEEEc
Confidence 456665 46899999999998 887 5677776666678898887 7775544
No 228
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=28.28 E-value=74 Score=26.69 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCch
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVD 42 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~ 42 (148)
+.++-..++.|-++ |+ .||++||+|-+
T Consensus 35 I~~~lpTI~~l~~~-ga-kvvl~sH~gRP 61 (389)
T PRK00073 35 IRAALPTIKYLLEK-GA-KVILLSHLGRP 61 (389)
T ss_pred HHHHHHHHHHHHHC-CC-eEEEEEecCCC
Confidence 44555566666666 77 48999999966
No 229
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=28.18 E-value=55 Score=26.59 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=22.7
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
....+.+++.++.+|+. ++|.||++.-..
T Consensus 61 ~p~~~~v~~~~~~~~~~-~~D~IIaiGGGS 89 (366)
T PF00465_consen 61 NPTLEDVDEAAEQARKF-GADCIIAIGGGS 89 (366)
T ss_dssp S-BHHHHHHHHHHHHHT-TSSEEEEEESHH
T ss_pred CCcHHHHHHHHHHHHhc-CCCEEEEcCCCC
Confidence 35678888888888888 899999987654
No 230
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=27.95 E-value=1.1e+02 Score=25.14 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=24.7
Q ss_pred HHHHhhcCCCCEEEEEeCCCchhh---------HHHHhhCC-CccEEEeCC
Q psy11241 21 ADRLVREDKVDIVIALSHAGVDLD---------QTVAKASK-HVSIVVGGH 61 (148)
Q Consensus 21 v~~lr~~~g~D~iI~lsH~g~~~d---------~~la~~~~-~iDvIlgGH 61 (148)
+..+.+. |+|.|++-.|.|-..| .++.+.++ .+.+|+.|.
T Consensus 239 a~~~~~~-G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgG 288 (356)
T PF01070_consen 239 AKRAVDA-GVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGG 288 (356)
T ss_dssp HHHHHHT-T-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS
T ss_pred HHHHHhc-CCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCC
Confidence 4455555 8888888888886543 24444443 577777663
No 231
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=27.82 E-value=1.4e+02 Score=26.87 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=36.6
Q ss_pred eEEech-HHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEe
Q psy11241 8 LRILDE-ITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG 59 (148)
Q Consensus 8 v~f~d~-~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlg 59 (148)
+.+.|| -+.+++.+++||+. |..+ +++|-........+|+++ |||-++.
T Consensus 436 i~l~Dp~R~~a~e~I~~Lr~~-GI~v-vMiTGDn~~TA~aIA~el-GI~~v~A 485 (673)
T PRK14010 436 IYLKDVIKDGLVERFRELREM-GIET-VMCTGDNELTAATIAKEA-GVDRFVA 485 (673)
T ss_pred EEeecCCcHHHHHHHHHHHHC-CCeE-EEECCCCHHHHHHHHHHc-CCceEEc
Confidence 456665 46899999999998 8874 677776666678898887 7764443
No 232
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=27.80 E-value=1.4e+02 Score=24.33 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHA 39 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~ 39 (148)
...+.+.+.++.+|+. ++|.||++.-.
T Consensus 68 p~~~~v~~~~~~~~~~-~~d~IIavGGG 94 (366)
T PRK09423 68 CSDNEIDRLVAIAEEN-GCDVVIGIGGG 94 (366)
T ss_pred CCHHHHHHHHHHHHhc-CCCEEEEecCh
Confidence 3455666666666665 67777766543
No 233
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=27.60 E-value=1.4e+02 Score=17.87 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=19.1
Q ss_pred EEEEEecCCCEEEEeceEEecCCCCCCCHHHHHHhHhh
Q psy11241 110 IHLQYNDKGNIVSWRGDPILLDKHIQEGNIVVLFAKRF 147 (148)
Q Consensus 110 l~l~~~~~g~v~~~~~~~i~~~~~~~~D~~i~~~v~~~ 147 (148)
+.+.++.+|++..++. +.-+..-.=|.+..+.+..+
T Consensus 20 v~~~I~~~G~v~~~~v--~~s~~~~~l~~~a~~~v~~~ 55 (79)
T PF03544_consen 20 VEFTIDPDGRVSDVRV--IQSSGPPILDEAALRAVKKW 55 (79)
T ss_dssp EEEEEETTTEEEEEEE--EEESSSSCSHHHHHHHHCC-
T ss_pred EEEEEeCCCCEEEEEE--EEccCHHHHHHHHHHHHHhC
Confidence 5677778999876542 22111112456666666543
No 234
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=27.57 E-value=1.4e+02 Score=17.65 Aligned_cols=37 Identities=5% Similarity=0.067 Sum_probs=18.8
Q ss_pred EEEEEEecCCCEEEEeceEEecCCCCCCCHHHHHHhHhh
Q psy11241 109 LIHLQYNDKGNIVSWRGDPILLDKHIQEGNIVVLFAKRF 147 (148)
Q Consensus 109 ~l~l~~~~~g~v~~~~~~~i~~~~~~~~D~~i~~~v~~~ 147 (148)
.+.+.++++|++...+. +.-+..-.-|.+..+.+..|
T Consensus 13 ~v~~~i~~~G~v~~~~i--~~ssg~~~ld~~a~~av~~~ 49 (74)
T TIGR01352 13 VVRFTVDADGRVTSVSV--LKSSGDEALDRAALEAVRKA 49 (74)
T ss_pred EEEEEECCCCCEEEEEE--EEcCCChhHHHHHHHHHHhC
Confidence 35667778898875542 21111112345555555544
No 235
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=27.56 E-value=91 Score=24.42 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=35.4
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH---HHHhhC-CCccEEEeCCcccee
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ---TVAKAS-KHVSIVVGGHSHTFL 66 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~---~la~~~-~~iDvIlgGH~H~~~ 66 (148)
.-+.+.+.++++++.+. |+|-|.+--..|...-. .+.+.+ ...++-++-|.|..+
T Consensus 137 r~~~~~l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~ 195 (262)
T cd07948 137 RSDLVDLLRVYRAVDKL-GVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFHGHNDT 195 (262)
T ss_pred CCCHHHHHHHHHHHHHc-CCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 34567788888888877 89987777777765322 122221 123466788999766
No 236
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=27.41 E-value=2.5e+02 Score=24.60 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=38.5
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchhh------HHHHhhCCCccEEE--eCCccc
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLD------QTVAKASKHVSIVV--GGHSHT 64 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d------~~la~~~~~iDvIl--gGH~H~ 64 (148)
.|+.+++++++++|-.+ +..+|=++.--+...+ ..|.++.|++++-+ ||+.+.
T Consensus 463 ~d~~~~~~~ll~~l~~~-~~elvTi~~G~~~~~~~~~~l~~~i~~~~~~veve~~~GgQ~~y 523 (530)
T TIGR03599 463 KDPEDAAKKLLDKLLDE-DSELITIFYGEDATEEEAEELEAFIEEKYPDVEVEIYEGGQPLY 523 (530)
T ss_pred CCHHHHHHHHHHHHhcC-CCeEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEECCCCce
Confidence 47899999999999887 7899999988777543 23444568877755 554443
No 237
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=27.37 E-value=91 Score=19.76 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=13.3
Q ss_pred cccceeEE---EEEEe-cCCCEEE
Q psy11241 103 YSRYLGLI---HLQYN-DKGNIVS 122 (148)
Q Consensus 103 ~g~~lg~l---~l~~~-~~g~v~~ 122 (148)
.|+.||.+ ||.+| .+|++.+
T Consensus 15 ~G~~lG~v~~~Dl~iD~~~G~I~a 38 (76)
T TIGR02888 15 DGERLGVIGNIDLEIDEEDGRILS 38 (76)
T ss_pred CCcEeeccccceEEEECCCCEEEE
Confidence 34555655 99998 4688654
No 238
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=27.25 E-value=2e+02 Score=20.07 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCc
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGV 41 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~ 41 (148)
+.+++.+.++.+. +|+||.-.-.|.
T Consensus 54 ~~i~~~l~~~~~~--~DliIttGG~g~ 78 (144)
T TIGR00177 54 EEIREILRKAVDE--ADVVLTTGGTGV 78 (144)
T ss_pred HHHHHHHHHHHhC--CCEEEECCCCCC
Confidence 4444444443322 555554444333
No 239
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=27.23 E-value=75 Score=26.11 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
..++.+++.++.+|+. +||+||++.-..
T Consensus 70 p~~~~v~~~~~~~~~~-~~D~IiaiGGGS 97 (379)
T TIGR02638 70 PTITVVKAGVAAFKAS-GADYLIAIGGGS 97 (379)
T ss_pred cCHHHHHHHHHHHHhc-CCCEEEEeCChH
Confidence 3478888888888887 899999987643
No 240
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=26.97 E-value=47 Score=28.60 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=12.4
Q ss_pred ccEEEeCCccceec
Q psy11241 54 VSIVVGGHSHTFLY 67 (148)
Q Consensus 54 iDvIlgGH~H~~~~ 67 (148)
.|++.+||.|.+..
T Consensus 419 PDv~~~Ghvh~~g~ 432 (481)
T COG1311 419 PDVFHTGHVHKFGT 432 (481)
T ss_pred CcEEEEccccccce
Confidence 78999999998874
No 241
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=26.87 E-value=1.6e+02 Score=23.38 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
...+.+.+.++.+|+. ++|.||++.-..
T Consensus 62 p~~~~v~~~~~~~~~~-~~d~IIaiGGGs 89 (332)
T cd07766 62 PTFEEVKEAVERARAA-EVDAVIAVGGGS 89 (332)
T ss_pred cCHHHHHHHHHHHHhc-CcCEEEEeCCch
Confidence 4577888888888886 789988887643
No 242
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=26.37 E-value=76 Score=26.11 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
...+.+.+.++.+|+. +||+||++.-..
T Consensus 71 p~~~~v~~~~~~~~~~-~~D~IIaiGGGS 98 (382)
T PRK10624 71 PTIEVVKEGVEVFKAS-GADYLIAIGGGS 98 (382)
T ss_pred cCHHHHHHHHHHHHhc-CCCEEEEeCChH
Confidence 3478888888999887 899999987643
No 243
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=26.37 E-value=1.2e+02 Score=23.45 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=24.5
Q ss_pred EEechHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy11241 9 RILDEITSVNKEADRLVREDKVDIVIALSHA 39 (148)
Q Consensus 9 ~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~ 39 (148)
.+.+..+.+++.++++++. ++|+||.+..+
T Consensus 21 ~~~~~~~~l~~~i~~i~~~-~~d~vv~~GDl 50 (267)
T cd07396 21 YYRNSLEKLEEAVEEWNRE-SLDFVVQLGDI 50 (267)
T ss_pred hHHHhHHHHHHHHHHHHcC-CCCEEEECCCe
Confidence 3456788899999999887 79999998765
No 244
>PRK01119 hypothetical protein; Provisional
Probab=26.36 E-value=1.1e+02 Score=20.83 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEe
Q psy11241 16 SVNKEADRLVREDKVDIVIALS 37 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~ls 37 (148)
+++++.++.++- |+|.||.+.
T Consensus 61 A~~rm~~~A~~l-GAnAVIgvr 81 (106)
T PRK01119 61 AIREMEQRAKDI-GANAVIGVD 81 (106)
T ss_pred HHHHHHHHHHHc-CCCEEEEEE
Confidence 334444444555 888888764
No 245
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=26.35 E-value=78 Score=18.93 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=12.8
Q ss_pred eEEEEEEecCCCEEEEe
Q psy11241 108 GLIHLQYNDKGNIVSWR 124 (148)
Q Consensus 108 g~l~l~~~~~g~v~~~~ 124 (148)
.+|++.+|++|.|+++.
T Consensus 42 dRLnv~~D~~g~I~~v~ 58 (60)
T PF11720_consen 42 DRLNVEVDDDGVITRVR 58 (60)
T ss_pred CcEEEEECCCCcEEEEe
Confidence 46888888888887653
No 246
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=26.30 E-value=79 Score=25.90 Aligned_cols=28 Identities=14% Similarity=0.187 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
...+.+.+.++.+|+. +||+||++.-..
T Consensus 67 p~~~~v~~~~~~~~~~-~~d~IIaiGGGS 94 (374)
T cd08189 67 PTIENVEAGLALYREN-GCDAILAVGGGS 94 (374)
T ss_pred cCHHHHHHHHHHHHhc-CCCEEEEeCCcc
Confidence 4577888888888887 899999987643
No 247
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=26.28 E-value=2.1e+02 Score=21.16 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCchhh--H----HHHhhCC--CccEEEeCC
Q psy11241 16 SVNKEADRLVREDKVDIVIALSHAGVDLD--Q----TVAKASK--HVSIVVGGH 61 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH~g~~~d--~----~la~~~~--~iDvIlgGH 61 (148)
...+.++.+++. ++|+|-+-+-++.... + .|.+..+ ++-+++||-
T Consensus 121 p~~~l~~~~~~~-~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 121 PPEEFVEAVKEH-KPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred CHHHHHHHHHHc-CCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECC
Confidence 345566666665 7886655444443321 2 2323334 688888884
No 248
>PRK00967 hypothetical protein; Provisional
Probab=26.16 E-value=1.1e+02 Score=20.55 Aligned_cols=22 Identities=0% Similarity=0.293 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeC
Q psy11241 16 SVNKEADRLVREDKVDIVIALSH 38 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH 38 (148)
+++++.++.++. |+|.||.+.=
T Consensus 61 A~~rm~~~A~~~-GAnAIIgvr~ 82 (105)
T PRK00967 61 AIDRMKEEAKQK-GANAIVGMRF 82 (105)
T ss_pred HHHHHHHHHHHc-CCCEEEEEEE
Confidence 334444444555 7888887753
No 249
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=26.09 E-value=1e+02 Score=22.68 Aligned_cols=48 Identities=13% Similarity=0.247 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhh---cCCCCEEEE-----EeCCCchhh---HHHHh-hCCCccEEEeCCc
Q psy11241 15 TSVNKEADRLVR---EDKVDIVIA-----LSHAGVDLD---QTVAK-ASKHVSIVVGGHS 62 (148)
Q Consensus 15 ~~~~~~v~~lr~---~~g~D~iI~-----lsH~g~~~d---~~la~-~~~~iDvIlgGH~ 62 (148)
..+++..+..++ .+.+|+||+ .-+.|+=.. .++.+ +-+..++|++|+.
T Consensus 79 ~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~ 138 (172)
T PF02572_consen 79 AAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRN 138 (172)
T ss_dssp HHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCC
Confidence 444444444443 236999997 223333222 23333 3467999999975
No 250
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.09 E-value=73 Score=24.64 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=28.9
Q ss_pred HHHHHHHHhhc-CCCCEEEEEeCCCchhh---------------HHHHhhCCCccEEEeCCccce
Q psy11241 17 VNKEADRLVRE-DKVDIVIALSHAGVDLD---------------QTVAKASKHVSIVVGGHSHTF 65 (148)
Q Consensus 17 ~~~~v~~lr~~-~g~D~iI~lsH~g~~~d---------------~~la~~~~~iDvIlgGH~H~~ 65 (148)
++..++.+..+ ..-...|+++|+..... .--+..++++|.+--||-|..
T Consensus 161 ~~~~~~~~~~~~~~~~~~Il~~H~~v~g~~~~~se~~~~~g~~~~v~~~~~~~~dYvALGHiH~~ 225 (253)
T TIGR00619 161 LRQALEGLIRRLDPDLPKILLAHLFTAGATKSATERRIYIGFTYAVPLINFPEADYVALGHHHIH 225 (253)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcceeccCCCcCceEEeeECCccccCHHHCCccchhhccccccc
Confidence 34445555432 11236889999865321 112334578899988999974
No 251
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=26.08 E-value=81 Score=25.92 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
..+.+.+.++.+|+. ++|.||++.-..
T Consensus 71 ~~~~v~~~~~~~~~~-~~D~IIaiGGGS 97 (382)
T cd08187 71 RLETVREGIELCKEE-KVDFILAVGGGS 97 (382)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEeCChH
Confidence 467888888888887 889988887543
No 252
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=25.97 E-value=2e+02 Score=22.67 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=25.2
Q ss_pred ccEEEeCCccceecCCCCCCCCCCCCCCCCEEEecCCCCceEEEEecCccccc
Q psy11241 54 VSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRY 106 (148)
Q Consensus 54 iDvIlgGH~H~~~~~~~~~~~~~~~~~~~p~~v~~~~~g~~~~vvq~g~~g~~ 106 (148)
.|+++.||.|.+-. ..+.+ .+|+.+.++...++.+.
T Consensus 204 PhVyf~Gnq~~f~t----------------~~~~~-~~~~~v~lv~vP~Fs~t 239 (257)
T cd07387 204 PHVYFAGNQPKFGT----------------KLVEG-EEGQRVLLVCVPSFSKT 239 (257)
T ss_pred CCEEEeCCCcceee----------------eEEEc-CCCCeEEEEEeCCcCcC
Confidence 57899999998753 13434 44667888888887653
No 253
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=25.95 E-value=1.5e+02 Score=23.60 Aligned_cols=58 Identities=26% Similarity=0.259 Sum_probs=36.7
Q ss_pred eEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCch---hh-HHHHhhCCCccEEEeCCccceec
Q psy11241 8 LRILDEITSVNKEADRLVREDKVDIVIALSHAGVD---LD-QTVAKASKHVSIVVGGHSHTFLY 67 (148)
Q Consensus 8 v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~---~d-~~la~~~~~iDvIlgGH~H~~~~ 67 (148)
++..+.++.++++.+..++- ..|+ |+|.|.|-- +| +.+.++.+++|=++||-|-+.++
T Consensus 192 ~sl~~a~~~~~~i~~aa~~v-~~di-i~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ERlP 253 (268)
T PF09370_consen 192 LSLEEAAERIQEIFDAARAV-NPDI-IVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSMERLP 253 (268)
T ss_dssp --HHHHHHHHHHHHHHHHCC--TT--EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh-CCCe-EEEEeCCCCCCHHHHHHHHhcCCCCCEEecccchhhcc
Confidence 44456666777777777766 6776 566676632 23 45667889999999998876663
No 254
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=25.75 E-value=2.4e+02 Score=21.09 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCch-hhHHHHhhCCCccEEEeC
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVD-LDQTVAKASKHVSIVVGG 60 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~-~d~~la~~~~~iDvIlgG 60 (148)
.++...++.|++. |+.-|++++=..-. .-+.|+++.|++.++.+.
T Consensus 138 ~Tl~~ai~~L~~~-G~~~I~~~~ll~~~~gl~~l~~~~p~v~i~~~~ 183 (209)
T PRK00129 138 GSAIAAIDLLKKR-GAKNIKVLCLVAAPEGIKALEEAHPDVEIYTAA 183 (209)
T ss_pred HHHHHHHHHHHHc-CCCEEEEEEEecCHHHHHHHHHHCCCcEEEEEe
Confidence 4677788888887 66666555433333 235788889999887764
No 255
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=25.67 E-value=1.1e+02 Score=19.12 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=16.1
Q ss_pred EEEecCccccceeEEEEEEecCCCEEEEe
Q psy11241 96 LVVQAAAYSRYLGLIHLQYNDKGNIVSWR 124 (148)
Q Consensus 96 ~vvq~g~~g~~lg~l~l~~~~~g~v~~~~ 124 (148)
.+.+.|-+ |...|++|++|+.++++
T Consensus 43 Fvt~~Gv~----G~F~l~~d~~~kf~sle 67 (68)
T PF11197_consen 43 FVTHDGVH----GRFRLEFDDNNKFVSLE 67 (68)
T ss_pred eecCCCce----EEEEEEECCCCCEEEeE
Confidence 34455533 55688888888876653
No 256
>PRK10481 hypothetical protein; Provisional
Probab=25.61 E-value=1.2e+02 Score=23.40 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCch
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVD 42 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~ 42 (148)
...+++.+.+|.++ |+|.|+++.-..+.
T Consensus 76 ~~~lq~~i~~l~~~-g~d~ivl~Ctgdfp 103 (224)
T PRK10481 76 ERDLQSVIEVLDNQ-GYDVILLLCTGEFP 103 (224)
T ss_pred HHHHHHHHHHHHhC-CCCEEEEEecCCCC
Confidence 45788899999988 99999999877654
No 257
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=25.37 E-value=2.1e+02 Score=23.68 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=21.1
Q ss_pred HHHHHHhhcCCCCEEEEEeCCCchhh-----HHHHhhCCCccEEEeC
Q psy11241 19 KEADRLVREDKVDIVIALSHAGVDLD-----QTVAKASKHVSIVVGG 60 (148)
Q Consensus 19 ~~v~~lr~~~g~D~iI~lsH~g~~~d-----~~la~~~~~iDvIlgG 60 (148)
+.++.|-+. |+|+|++=+--|..+. +.|-+.+|.+++|.|.
T Consensus 111 er~~~L~~a-gvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGN 156 (352)
T PF00478_consen 111 ERAEALVEA-GVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGN 156 (352)
T ss_dssp HHHHHHHHT-T-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred HHHHHHHHc-CCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecc
Confidence 344445545 7888877533343321 3455556666666553
No 258
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=25.37 E-value=1e+02 Score=23.09 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=17.6
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCch
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVD 42 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~ 42 (148)
.|..+.+++.+.++-+++++|+||.-.-.|..
T Consensus 48 pDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g 79 (193)
T PRK09417 48 PDEQDLIEQTLIELVDEMGCDLVLTTGGTGPA 79 (193)
T ss_pred CCCHHHHHHHHHHHhhcCCCCEEEECCCCCCC
Confidence 45555666666555432257766666555543
No 259
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=25.36 E-value=91 Score=25.04 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
.++.+.+.++.+|+. ++|.||++.-..
T Consensus 63 ~~~~v~~~~~~~~~~-~~d~IiaiGGGs 89 (332)
T cd08180 63 PIEVVAKGIKKFLDF-KPDIVIALGGGS 89 (332)
T ss_pred CHHHHHHHHHHHHhc-CCCEEEEECCch
Confidence 488899999999998 899999997643
No 260
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=25.32 E-value=83 Score=25.64 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHA 39 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~ 39 (148)
...+.+.+.++.+|+. +||+||++.-.
T Consensus 61 p~~~~v~~~~~~~~~~-~~D~IIavGGG 87 (367)
T cd08182 61 PDLEDLAAGIRLLREF-GPDAVLAVGGG 87 (367)
T ss_pred cCHHHHHHHHHHHHhc-CcCEEEEeCCc
Confidence 3467788888888877 78888888764
No 261
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=25.31 E-value=2e+02 Score=24.97 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=16.0
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCc
Q psy11241 18 NKEADRLVREDKVDIVIALSHAGV 41 (148)
Q Consensus 18 ~~~v~~lr~~~g~D~iI~lsH~g~ 41 (148)
.+.++.|-+. |+|+|++=+.-|.
T Consensus 250 ~~r~~~l~~a-g~d~i~iD~~~g~ 272 (505)
T PLN02274 250 KERLEHLVKA-GVDVVVLDSSQGD 272 (505)
T ss_pred HHHHHHHHHc-CCCEEEEeCCCCC
Confidence 4556666666 8999988765554
No 262
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.29 E-value=86 Score=25.86 Aligned_cols=39 Identities=8% Similarity=0.091 Sum_probs=24.1
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhh
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKA 50 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~ 50 (148)
.||...+-..++..+++ |.|+|++=|-..+.+...|.++
T Consensus 204 ~DpAaVafDAi~~Akar-~~DvvliDTAGRLhnk~nLM~E 242 (340)
T COG0552 204 ADPAAVAFDAIQAAKAR-GIDVVLIDTAGRLHNKKNLMDE 242 (340)
T ss_pred CCcHHHHHHHHHHHHHc-CCCEEEEeCcccccCchhHHHH
Confidence 36666666677777776 6777776666555555444433
No 263
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=25.23 E-value=90 Score=25.55 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
...+.+.+.++.+|+. +||+||++.-..
T Consensus 59 p~~~~v~~~~~~~~~~-~~D~IIaiGGGS 86 (374)
T cd08183 59 PSVELVDAAVAEARNA-GCDVVIAIGGGS 86 (374)
T ss_pred cCHHHHHHHHHHHHhc-CCCEEEEecCch
Confidence 3467888899999988 899999998654
No 264
>PLN03034 phosphoglycerate kinase; Provisional
Probab=25.08 E-value=96 Score=26.83 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCch
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVD 42 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~ 42 (148)
+.++-..++.|-++ |+ .||++||+|-+
T Consensus 117 I~a~lpTI~~L~~~-ga-kvVl~SHlGRP 143 (481)
T PLN03034 117 IRAAIPTIKYLISN-GA-KVILSSHLGRP 143 (481)
T ss_pred HHHHHHHHHHHHHC-CC-eEEEEEecCCC
Confidence 34445566666666 77 58889999976
No 265
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=25.04 E-value=86 Score=25.66 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
...+.+.+.++.+|+. +||.||++.-..
T Consensus 67 p~~~~v~~~~~~~~~~-~~D~IIaiGGGs 94 (376)
T cd08193 67 PPEAVVEAAVEAARAA-GADGVIGFGGGS 94 (376)
T ss_pred cCHHHHHHHHHHHHhc-CCCEEEEeCCch
Confidence 4577888888888887 899999987644
No 266
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.98 E-value=1.2e+02 Score=20.62 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=18.8
Q ss_pred EEEEEEecCCCEEEEeceEEecCCCCCCCHHHHH
Q psy11241 109 LIHLQYNDKGNIVSWRGDPILLDKHIQEGNIVVL 142 (148)
Q Consensus 109 ~l~l~~~~~g~v~~~~~~~i~~~~~~~~D~~i~~ 142 (148)
.+.++++-++++.+++..+-.++ |+|.++.+
T Consensus 41 lVtV~~~G~~ev~~v~Idp~l~d---peD~E~Le 71 (105)
T COG0718 41 LVTVTINGKGEVKSVEIDPSLLD---PEDKEMLE 71 (105)
T ss_pred EEEEEEeCCCcEEEEEeCHHHcC---cccHHHHH
Confidence 46677765677877776544443 45766543
No 267
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.87 E-value=65 Score=25.82 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=10.2
Q ss_pred eEEEEecCc----cccceeEEEE
Q psy11241 94 QVLVVQAAA----YSRYLGLIHL 112 (148)
Q Consensus 94 ~~~vvq~g~----~g~~lg~l~l 112 (148)
+.+++..|. .|+.+|.+++
T Consensus 223 gavVIDVGin~~~~gkl~GDVd~ 245 (285)
T PRK14189 223 GATVIDVGMNRDDAGKLCGDVDF 245 (285)
T ss_pred CCEEEEccccccCCCCeeCCccH
Confidence 455665552 3456666553
No 268
>PRK12855 hypothetical protein; Provisional
Probab=24.68 E-value=1.2e+02 Score=20.51 Aligned_cols=22 Identities=0% Similarity=0.154 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeC
Q psy11241 16 SVNKEADRLVREDKVDIVIALSH 38 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH 38 (148)
+++++.++.++- |+|.||.+.=
T Consensus 61 A~~rm~~~A~~l-GAnAVVgvr~ 82 (103)
T PRK12855 61 AMEEMKTLARQK-NANAIVGIDV 82 (103)
T ss_pred HHHHHHHHHHHc-CCCEEEEEEE
Confidence 344445555555 8999988754
No 269
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=24.67 E-value=85 Score=25.81 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
..+.+.+.++.+|+. +||+||++.-..
T Consensus 69 ~~~~v~~~~~~~~~~-~~D~IIaiGGGS 95 (383)
T cd08186 69 TVDQVDEAAKLGREF-GAQAVIAIGGGS 95 (383)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEeCCcc
Confidence 567788888888887 788888887643
No 270
>PRK02877 hypothetical protein; Provisional
Probab=24.65 E-value=1.3e+02 Score=20.45 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=11.0
Q ss_pred HHHHHHhhcCCCCEEEEEe
Q psy11241 19 KEADRLVREDKVDIVIALS 37 (148)
Q Consensus 19 ~~v~~lr~~~g~D~iI~ls 37 (148)
++.++.++- |+|.||.+.
T Consensus 64 rm~~~A~~l-GAnAVIgvr 81 (106)
T PRK02877 64 ELGEQARAL-GADAVVGID 81 (106)
T ss_pred HHHHHHHHc-CCCEEEEEE
Confidence 334444444 888888874
No 271
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=24.59 E-value=1.5e+02 Score=22.15 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcCCC--CEEEEEeCC-CchhhHHHHhhCCCccEEEeC
Q psy11241 15 TSVNKEADRLVREDKV--DIVIALSHA-GVDLDQTVAKASKHVSIVVGG 60 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~--D~iI~lsH~-g~~~d~~la~~~~~iDvIlgG 60 (148)
.++.+.++.|++. |+ .-|++++=. .-+.-..+.+++|++.++.+.
T Consensus 135 ~s~~~ai~~L~~~-G~~~~~I~~v~~ias~~Gl~~l~~~~P~v~I~ta~ 182 (207)
T PF14681_consen 135 GSAIAAIEILKEH-GVPEENIIIVSVIASPEGLERLLKAFPDVRIYTAA 182 (207)
T ss_dssp HHHHHHHHHHHHT-TG-GGEEEEEEEEEEHHHHHHHHHHSTTSEEEEEE
T ss_pred hhHHHHHHHHHHc-CCCcceEEEEEEEecHHHHHHHHHhCCCeEEEEEE
Confidence 4677788888887 55 455555443 333446788899999877763
No 272
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=24.50 E-value=89 Score=25.58 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC-chhhHHHH
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG-VDLDQTVA 48 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g-~~~d~~la 48 (148)
...+.+.+.++.+|+. +||+||++.-.. ++..+.+|
T Consensus 65 p~~~~v~~~~~~~~~~-~~D~IIavGGGSviD~AK~ia 101 (375)
T cd08179 65 PSVETVLKGAEAMREF-EPDWIIALGGGSPIDAAKAMW 101 (375)
T ss_pred cCHHHHHHHHHHHHhc-CCCEEEEeCCccHHHHHHHHH
Confidence 4567888899999987 899999997654 33334443
No 273
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=24.41 E-value=1.7e+02 Score=24.59 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=33.4
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHh----hCCCccEEEeC
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAK----ASKHVSIVVGG 60 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~----~~~~iDvIlgG 60 (148)
.|+.+.+.+..+++-.. ..+++++.++.-.+.-.+|++ .+|++. ++|.
T Consensus 13 ~d~~~v~~e~~~~~~~~-~~~~~~ifF~~~~~~~~~l~~~l~~~~pg~~-liGC 64 (379)
T COG3287 13 KDAESVIEEMARQLGSD-RSDFVLIFFSPERDEHVQLASALKQAFPGIC-LIGC 64 (379)
T ss_pred CCHHHHHHHHHHhhCcC-CCCeEEEEeccccccHHHHHHHHHhhCCCCe-Eecc
Confidence 47777888888877744 699999999987766444444 458864 4443
No 274
>PF04205 FMN_bind: FMN-binding domain; InterPro: IPR007329 This conserved region includes the FMN-binding site of the NqrC protein [] as well as the NosR and NirI regulatory proteins.; GO: 0010181 FMN binding, 0016020 membrane; PDB: 3LWX_A 2KZX_A 3DCZ_A 3O6U_D.
Probab=24.30 E-value=1.3e+02 Score=18.53 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=12.3
Q ss_pred EEEEEEecCCCEEEEece
Q psy11241 109 LIHLQYNDKGNIVSWRGD 126 (148)
Q Consensus 109 ~l~l~~~~~g~v~~~~~~ 126 (148)
.+.+.|+.+|+|+.++..
T Consensus 7 ~v~v~i~~dg~I~~v~~~ 24 (81)
T PF04205_consen 7 TVTVTIDKDGKITDVKIL 24 (81)
T ss_dssp EEEEEEETTTEEEEEEEE
T ss_pred EEEEEEeCCCEEEEEEEe
Confidence 456666777998877653
No 275
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=24.27 E-value=92 Score=25.54 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHA 39 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~ 39 (148)
...+.+.+.++.+|+. ++|+||++.-.
T Consensus 69 p~~~~v~~~~~~~~~~-~~D~IIavGGG 95 (377)
T cd08176 69 PTITNVKDGLAVFKKE-GCDFIISIGGG 95 (377)
T ss_pred CCHHHHHHHHHHHHhc-CCCEEEEeCCc
Confidence 3466777777777776 78888877653
No 276
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=24.19 E-value=1.3e+02 Score=22.73 Aligned_cols=46 Identities=11% Similarity=0.035 Sum_probs=25.2
Q ss_pred CCCeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchh-hHHHHhhC
Q psy11241 5 TGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDL-DQTVAKAS 51 (148)
Q Consensus 5 ~~~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~-d~~la~~~ 51 (148)
|+|--+-||+.......+.|++..|++.| +|||..... ..++|+++
T Consensus 31 p~GnilIDP~~ls~~~~~~l~a~ggv~~I-vLTn~dHvR~A~~ya~~~ 77 (199)
T PF14597_consen 31 PEGNILIDPPPLSAHDWKHLDALGGVAWI-VLTNRDHVRAAEDYAEQT 77 (199)
T ss_dssp TT--EEES-----HHHHHHHHHTT--SEE-E-SSGGG-TTHHHHHHHS
T ss_pred CCCCEEecCccccHHHHHHHHhcCCceEE-EEeCChhHhHHHHHHHHh
Confidence 66777789999999999999998667655 567765443 35677664
No 277
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.14 E-value=2e+02 Score=24.71 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=16.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCc
Q psy11241 17 VNKEADRLVREDKVDIVIALSHAGV 41 (148)
Q Consensus 17 ~~~~v~~lr~~~g~D~iI~lsH~g~ 41 (148)
..+.+..|-++ |+|+|++=+.-|.
T Consensus 228 ~~~~a~~Lv~a-Gvd~i~~D~a~~~ 251 (479)
T PRK07807 228 VAAKARALLEA-GVDVLVVDTAHGH 251 (479)
T ss_pred HHHHHHHHHHh-CCCEEEEeccCCc
Confidence 34566677777 8999877655554
No 278
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=24.14 E-value=43 Score=25.13 Aligned_cols=15 Identities=20% Similarity=0.018 Sum_probs=12.1
Q ss_pred CCccEEEeCCcccee
Q psy11241 52 KHVSIVVGGHSHTFL 66 (148)
Q Consensus 52 ~~iDvIlgGH~H~~~ 66 (148)
.+.++|+.||+|..-
T Consensus 166 ~~~~~iv~GHTh~~~ 180 (208)
T cd07425 166 LGAKRMVVGHTPQEG 180 (208)
T ss_pred cCCCeEEEcCeeeec
Confidence 357999999999753
No 279
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=24.08 E-value=88 Score=24.23 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEe
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALS 37 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~ls 37 (148)
..+..+++.++|++. ++|+||++|
T Consensus 26 ~~~~~~~~~~~l~~~-~pd~ivvis 49 (272)
T PF02900_consen 26 TFAALQELGRRLREA-KPDVIVVIS 49 (272)
T ss_dssp HHHHHHHHHHHCHST-S-SEEEEEE
T ss_pred HHHHHHHHHHHHHHc-CCCEEEEEe
Confidence 345667777888877 799999985
No 280
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=24.06 E-value=1.9e+02 Score=22.43 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=10.0
Q ss_pred CCccEEEeCCcc
Q psy11241 52 KHVSIVVGGHSH 63 (148)
Q Consensus 52 ~~iDvIlgGH~H 63 (148)
+..-+||-|||=
T Consensus 82 ~~~~liLiGHSI 93 (266)
T PF10230_consen 82 PNVKLILIGHSI 93 (266)
T ss_pred CCCcEEEEeCcH
Confidence 567899999985
No 281
>PRK10116 universal stress protein UspC; Provisional
Probab=24.01 E-value=95 Score=20.91 Aligned_cols=10 Identities=30% Similarity=0.717 Sum_probs=6.5
Q ss_pred CccEEEeCCc
Q psy11241 53 HVSIVVGGHS 62 (148)
Q Consensus 53 ~iDvIlgGH~ 62 (148)
++|+|+-|+.
T Consensus 102 ~~DLiV~g~~ 111 (142)
T PRK10116 102 HFDLVICGNH 111 (142)
T ss_pred CCCEEEEcCC
Confidence 6788776544
No 282
>TIGR00035 asp_race aspartate racemase.
Probab=23.93 E-value=1.7e+02 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
++...+.+.++.|.+. |||+||+-....
T Consensus 59 ~~~~~l~~~~~~L~~~-g~d~iviaCNTa 86 (229)
T TIGR00035 59 RPRPILIDIAVKLENA-GADFIIMPCNTA 86 (229)
T ss_pred hHHHHHHHHHHHHHHc-CCCEEEECCccH
Confidence 4777888889999887 999999987653
No 283
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=23.92 E-value=2.1e+02 Score=18.53 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=18.3
Q ss_pred CCCEEEEEeCCCchhh--HHHHhhCCCccEEEeCCccc
Q psy11241 29 KVDIVIALSHAGVDLD--QTVAKASKHVSIVVGGHSHT 64 (148)
Q Consensus 29 g~D~iI~lsH~g~~~d--~~la~~~~~iDvIlgGH~H~ 64 (148)
|.++-......|...+ .++|++ .++|+|+-|+...
T Consensus 69 g~~~~~~~~~~~~~~~~I~~~a~~-~~~dlIV~G~~~~ 105 (132)
T cd01988 69 GVPVHTIIRIDHDIASGILRTAKE-RQADLIIMGWHGS 105 (132)
T ss_pred CCceEEEEEecCCHHHHHHHHHHh-cCCCEEEEecCCC
Confidence 5554444433332222 234433 4699999877644
No 284
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=23.87 E-value=95 Score=25.68 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
...+.+.+.++.+|+. ++|+||++.-..
T Consensus 62 p~~~~v~~~~~~~~~~-~~D~IIaiGGGS 89 (398)
T cd08178 62 PSLETVRKGLELMNSF-KPDTIIALGGGS 89 (398)
T ss_pred cCHHHHHHHHHHHHhc-CCCEEEEeCCcc
Confidence 4567888888888887 899999987643
No 285
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=23.81 E-value=92 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHA 39 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~ 39 (148)
...+.+.+.++.+|+. ++|+||++.-.
T Consensus 65 p~~~~v~~~~~~~~~~-~~d~IIaiGGG 91 (370)
T cd08192 65 PTEAAVEAGLAAYRAG-GCDGVIAFGGG 91 (370)
T ss_pred CCHHHHHHHHHHHHhc-CCCEEEEeCCc
Confidence 4566777777777776 78888887654
No 286
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.79 E-value=86 Score=25.14 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=11.3
Q ss_pred eEEEEecCcc----ccceeEEEE
Q psy11241 94 QVLVVQAAAY----SRYLGLIHL 112 (148)
Q Consensus 94 ~~~vvq~g~~----g~~lg~l~l 112 (148)
+.+|+-.|-+ |+.+|.+++
T Consensus 222 GavVIDvGin~~~~gkl~GDvdf 244 (284)
T PRK14170 222 GAIVIDVGMDRDENNKLCGDVDF 244 (284)
T ss_pred CCEEEEccCcccCCCCeecccch
Confidence 5666666643 566666653
No 287
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=23.46 E-value=2.1e+02 Score=22.12 Aligned_cols=52 Identities=8% Similarity=0.121 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCchhh-------HHHHhhCCCccEEEeCCcccee
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVDLD-------QTVAKASKHVSIVVGGHSHTFL 66 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d-------~~la~~~~~iDvIlgGH~H~~~ 66 (148)
.+.+.++++++.+- |+|.|-+--..|.-.- ..|.+.++++|+-|+=|.|..+
T Consensus 142 ~~~~~~~~~~~~~~-G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~ 200 (268)
T cd07940 142 LDFLIEVVEAAIEA-GATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDL 200 (268)
T ss_pred HHHHHHHHHHHHHc-CCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCc
Confidence 45566666666665 6777666666665421 1333445555688899999776
No 288
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=23.42 E-value=96 Score=24.98 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
.+.+.+++.++.+|+. ++|.||++.-..
T Consensus 61 p~~~~v~~~~~~~~~~-~~d~IIaiGGGs 88 (337)
T cd08177 61 TPVEVTEAAVAAAREA-GADGIVAIGGGS 88 (337)
T ss_pred CCHHHHHHHHHHHHhc-CCCEEEEeCCcH
Confidence 4577888888888887 899999997643
No 289
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.37 E-value=71 Score=25.76 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=8.8
Q ss_pred HHhhCCCccEEEe--CCcc
Q psy11241 47 VAKASKHVSIVVG--GHSH 63 (148)
Q Consensus 47 la~~~~~iDvIlg--GH~H 63 (148)
|.+.+...|+++. |+.|
T Consensus 195 l~~~~~~ADIvIsAvGkp~ 213 (297)
T PRK14186 195 LASITREADILVAAAGRPN 213 (297)
T ss_pred HHHHHhhCCEEEEccCCcC
Confidence 3333445677775 4444
No 290
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=23.29 E-value=57 Score=24.94 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=12.1
Q ss_pred CccEEEeCCccceec
Q psy11241 53 HVSIVVGGHSHTFLY 67 (148)
Q Consensus 53 ~iDvIlgGH~H~~~~ 67 (148)
..|+++.||+|..+.
T Consensus 134 ~~d~~I~GH~HP~i~ 148 (225)
T TIGR00024 134 DAKVLIFGHEHPAVK 148 (225)
T ss_pred cCCEEEECCCCceEE
Confidence 368999999997773
No 291
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=23.24 E-value=1.6e+02 Score=25.10 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHH
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTV 47 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~l 47 (148)
||+..+++.+++++.+ ++|+||+=|......+..+
T Consensus 166 dp~~i~~~~l~~~~~~-~~DvViIDTaGr~~~d~~l 200 (429)
T TIGR01425 166 DPVKIASEGVEKFKKE-NFDIIIVDTSGRHKQEDSL 200 (429)
T ss_pred CHHHHHHHHHHHHHhC-CCCEEEEECCCCCcchHHH
Confidence 7778888888888886 7999999888766655433
No 292
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=23.17 E-value=2.3e+02 Score=21.42 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCchhh------HHHHhhCCCccEEEeCC
Q psy11241 17 VNKEADRLVREDKVDIVIALSHAGVDLD------QTVAKASKHVSIVVGGH 61 (148)
Q Consensus 17 ~~~~v~~lr~~~g~D~iI~lsH~g~~~d------~~la~~~~~iDvIlgGH 61 (148)
....++.+++. ++|+|-+-+-++.... ..|.+.-+++.+++||-
T Consensus 128 ~e~~v~~~~~~-~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~ 177 (213)
T cd02069 128 IEKILEAAKEH-KADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGA 177 (213)
T ss_pred HHHHHHHHHHc-CCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEECh
Confidence 33444444444 5776655444443221 23433445788889984
No 293
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=23.08 E-value=2.3e+02 Score=22.55 Aligned_cols=42 Identities=7% Similarity=0.150 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC--CCccEEE
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS--KHVSIVV 58 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~--~~iDvIl 58 (148)
...++..+.|+.. |..+.+..+... ....++|++. .++|.|+
T Consensus 20 ~~~~~~~~~l~~~-g~~~~~~~t~~~-g~a~~~a~~a~~~~~D~vi 63 (301)
T COG1597 20 KLLREVEELLEEA-GHELSVRVTEEA-GDAIEIAREAAVEGYDTVI 63 (301)
T ss_pred hHHHHHHHHHHhc-CCeEEEEEeecC-ccHHHHHHHHHhcCCCEEE
Confidence 3444555555555 666666666655 3334455543 3566666
No 294
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=23.07 E-value=1.1e+02 Score=24.43 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEe-C
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALS-H 38 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~ls-H 38 (148)
.++.+++.+++++. ++|.||++| |
T Consensus 36 ~~a~~~~~~~i~~~-~Pd~IVViSpH 60 (294)
T cd07372 36 RWAYERARESIEAL-KPDVLLVHSPH 60 (294)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 36667777777777 799999984 5
No 295
>PRK01217 hypothetical protein; Provisional
Probab=22.93 E-value=1.3e+02 Score=20.65 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhcCCCCEEEEEe
Q psy11241 16 SVNKEADRLVREDKVDIVIALS 37 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~ls 37 (148)
+++++.++.++. |+|.||.+.
T Consensus 68 A~~rm~~~A~~l-GAnAVVgvr 88 (114)
T PRK01217 68 ALERMIDHAKEL-GANAVINVR 88 (114)
T ss_pred HHHHHHHHHHHc-CCCEEEEEE
Confidence 444455555555 899999884
No 296
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=22.88 E-value=3.6e+02 Score=20.81 Aligned_cols=8 Identities=38% Similarity=0.700 Sum_probs=4.8
Q ss_pred CccEEEeC
Q psy11241 53 HVSIVVGG 60 (148)
Q Consensus 53 ~iDvIlgG 60 (148)
|+|+++.|
T Consensus 200 GaD~~V~G 207 (228)
T PRK08091 200 QIDWVVSG 207 (228)
T ss_pred CCCEEEEC
Confidence 56666655
No 297
>PRK12856 hypothetical protein; Provisional
Probab=22.87 E-value=1.5e+02 Score=20.09 Aligned_cols=22 Identities=0% Similarity=0.175 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhcCCCCEEEEEeC
Q psy11241 16 SVNKEADRLVREDKVDIVIALSH 38 (148)
Q Consensus 16 ~~~~~v~~lr~~~g~D~iI~lsH 38 (148)
+++++.++.++- |+|.||.+.-
T Consensus 61 A~~rm~~~A~~l-GAnAVvgvr~ 82 (103)
T PRK12856 61 AMDEMKELAKQK-GANAIVGVDV 82 (103)
T ss_pred HHHHHHHHHHHc-CCCEEEEEEE
Confidence 334444555555 8898888754
No 298
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=22.84 E-value=95 Score=25.42 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
...+.+.+.++.+|+. ++|.||++.-..
T Consensus 64 p~~~~v~~~~~~~~~~-~~D~IIaiGGGS 91 (375)
T cd08194 64 PTDESVEEGVKLAKEG-GCDVIIALGGGS 91 (375)
T ss_pred cCHHHHHHHHHHHHhc-CCCEEEEeCCch
Confidence 4577788888888877 788888887643
No 299
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.78 E-value=2.9e+02 Score=21.50 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=37.2
Q ss_pred CeEEec-hHHHHHHHHHHHhhcCCCCEEEEEeCCCch-hhHHHHhhCCCccEEEe
Q psy11241 7 NLRILD-EITSVNKEADRLVREDKVDIVIALSHAGVD-LDQTVAKASKHVSIVVG 59 (148)
Q Consensus 7 ~v~f~d-~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~-~d~~la~~~~~iDvIlg 59 (148)
++.|.| |.+...++++.+|+. |.+.+.+++=..-. .-+.+++..+|+..+++
T Consensus 118 gviipDlp~ee~~~~~~~~~~~-gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 118 GVLVADLPLEESGDLVEAAKKH-GVKPIFLVAPNADDERLKQIAEKSQGFVYLVS 171 (256)
T ss_pred EEEECCCChHHHHHHHHHHHHC-CCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE
Confidence 555544 567888888999888 89988888765432 22467777788877776
No 300
>PLN02293 adenine phosphoribosyltransferase
Probab=22.66 E-value=3.2e+02 Score=20.18 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=35.5
Q ss_pred CCeEEechH----------HHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEe
Q psy11241 6 GNLRILDEI----------TSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG 59 (148)
Q Consensus 6 ~~v~f~d~~----------~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlg 59 (148)
.|+.|.|.. ..++.++++++.. ++|+|+.....|+.--..+|..+ ++.+++.
T Consensus 30 ~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~-~~d~Ivg~e~~Gi~lA~~lA~~L-g~p~v~~ 91 (187)
T PLN02293 30 PGIMFQDITTLLLDPKAFKDTIDLFVERYRDM-GISVVAGIEARGFIFGPPIALAI-GAKFVPL 91 (187)
T ss_pred CCcEEEECHHHhhCHHHHHHHHHHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHH-CCCEEEE
Confidence 377777642 2344556666665 79999999999988777777776 4555543
No 301
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=22.64 E-value=2e+02 Score=22.75 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=7.8
Q ss_pred CCCEEEEEeCCCc
Q psy11241 29 KVDIVIALSHAGV 41 (148)
Q Consensus 29 g~D~iI~lsH~g~ 41 (148)
|+|.|++-.|.|.
T Consensus 193 G~d~I~v~~~gG~ 205 (299)
T cd02809 193 GADGIVVSNHGGR 205 (299)
T ss_pred CCCEEEEcCCCCC
Confidence 6666666665543
No 302
>PRK09875 putative hydrolase; Provisional
Probab=22.60 E-value=1.9e+02 Score=23.07 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhH----HHHhhCCCccEEEeCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ----TVAKASKHVSIVVGGH 61 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~----~la~~~~~iDvIlgGH 61 (148)
+.++.+.+.+.++|+. |..-||=+|=.|+..|. +++++ .|+.+|.+--
T Consensus 31 ~~~~~~~~el~~~~~~-Gg~tiVd~T~~g~GRd~~~l~~is~~-tgv~Iv~~TG 82 (292)
T PRK09875 31 DQYAFICQEMNDLMTR-GVRNVIEMTNRYMGRNAQFMLDVMRE-TGINVVACTG 82 (292)
T ss_pred ccHHHHHHHHHHHHHh-CCCeEEecCCCccCcCHHHHHHHHHH-hCCcEEEcCc
Confidence 3457777777889988 99999999999988874 44444 6899888543
No 303
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.49 E-value=2.2e+02 Score=18.07 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEe
Q psy11241 18 NKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG 59 (148)
Q Consensus 18 ~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlg 59 (148)
...++.|+.. +||+||+ .++|...-..|.+ .||.++.+
T Consensus 53 ~~~~~~l~~~-~v~~vi~-~~iG~~~~~~l~~--~gI~v~~~ 90 (103)
T cd00851 53 GKAAEFLADE-GVDVVIV-GGIGPRALNKLRN--AGIKVYKG 90 (103)
T ss_pred hHHHHHHHHc-CCCEEEe-CCCCcCHHHHHHH--CCCEEEEc
Confidence 4456666665 8998888 4566443333432 46766654
No 304
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=22.35 E-value=1.2e+02 Score=22.71 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHhhcCCCC--EEEEEeCC-CchhhHHHHhhCCCccEEEe
Q psy11241 13 EITSVNKEADRLVREDKVD--IVIALSHA-GVDLDQTVAKASKHVSIVVG 59 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D--~iI~lsH~-g~~~d~~la~~~~~iDvIlg 59 (148)
|+|-.++.++-|+++..++ -|.++..+ |-+-...+|..++.|+.++.
T Consensus 2 pLEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~~i~avVa 51 (213)
T PF08840_consen 2 PLEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFPQISAVVA 51 (213)
T ss_dssp ECHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSEEEEEE
T ss_pred ChHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCCCccEEEE
Confidence 4566778888888875554 67777665 44445667888899998883
No 305
>PRK12342 hypothetical protein; Provisional
Probab=22.31 E-value=1.2e+02 Score=23.83 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=23.1
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHA 39 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~ 39 (148)
.|+..+++.+...+|.. ++|+|++=...
T Consensus 92 ~D~~ata~~La~~i~~~-~~DLVl~G~~s 119 (254)
T PRK12342 92 ALPLDTAKALAAAIEKI-GFDLLLFGEGS 119 (254)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEcCCc
Confidence 48899999999999986 89998775444
No 306
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=22.28 E-value=1.7e+02 Score=19.83 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=22.7
Q ss_pred HHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCcc
Q psy11241 20 EADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSH 63 (148)
Q Consensus 20 ~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H 63 (148)
..+.|++ ++++.+.- . ....++++.+.++|+|+++...
T Consensus 11 ~~~~l~~--~~~v~~~~---~-~~~~~~~~~l~~~d~ii~~~~~ 48 (133)
T PF00389_consen 11 EIERLEE--GFEVEFCD---S-PSEEELAERLKDADAIIVGSGT 48 (133)
T ss_dssp HHHHHHH--TSEEEEES---S-SSHHHHHHHHTTESEEEESTTS
T ss_pred HHHHHHC--CceEEEeC---C-CCHHHHHHHhCCCeEEEEcCCC
Confidence 4445554 36444443 2 2234677778889999987654
No 307
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=22.14 E-value=1.2e+02 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSH 38 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH 38 (148)
..++.+++.+++++. ++|.||+++.
T Consensus 29 ~~~~l~~~~~~l~~~-~Pd~ivvis~ 53 (271)
T cd07359 29 VFAAFARIRDRLEAA-RPDVVVVVGN 53 (271)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 345666677777765 7999999986
No 308
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.08 E-value=1.6e+02 Score=23.56 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeC
Q psy11241 18 NKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGG 60 (148)
Q Consensus 18 ~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgG 60 (148)
+.++..|.++ ||.+.|+-++. ..|.+.+...|+|+++
T Consensus 172 ~pla~lL~~~-gatVtv~~s~t-----~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 172 QPVSKLLLQK-NASVTILHSRS-----KDMASYLKDADVIVSA 208 (286)
T ss_pred HHHHHHHHHC-CCeEEEEeCCc-----hhHHHHHhhCCEEEEC
Confidence 3344455555 67666665432 3466667788888864
No 309
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.93 E-value=2e+02 Score=23.23 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEe
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALS 37 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~ls 37 (148)
.+.+.+.++..|+. +||+||++.
T Consensus 64 ~~~v~~~~~~~~~~-~~d~iiavG 86 (345)
T cd08171 64 YENVERLKKNPAVQ-EADMIFAVG 86 (345)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEeC
Confidence 33344444444433 444444443
No 310
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.92 E-value=1e+02 Score=24.68 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=16.2
Q ss_pred CCCEEEEEeCCCchhhHHHHhhCCCccEEEe--CCcc
Q psy11241 29 KVDIVIALSHAGVDLDQTVAKASKHVSIVVG--GHSH 63 (148)
Q Consensus 29 g~D~iI~lsH~g~~~d~~la~~~~~iDvIlg--GH~H 63 (148)
++-+.++-++. ..|.+.+...|++++ |+.|
T Consensus 182 ~atVt~chs~t-----~~l~~~~~~ADIvI~AvG~p~ 213 (284)
T PRK14190 182 NATVTYCHSKT-----KNLAELTKQADILIVAVGKPK 213 (284)
T ss_pred CCEEEEEeCCc-----hhHHHHHHhCCEEEEecCCCC
Confidence 45555543332 345555667788884 4444
No 311
>PRK09982 universal stress protein UspD; Provisional
Probab=21.91 E-value=1.7e+02 Score=19.96 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=11.0
Q ss_pred HHHhhCCCccEEEeCCc
Q psy11241 46 TVAKASKHVSIVVGGHS 62 (148)
Q Consensus 46 ~la~~~~~iDvIlgGH~ 62 (148)
+.|++ .++|+|+-||.
T Consensus 97 ~~A~~-~~aDLIVmG~~ 112 (142)
T PRK09982 97 EIMQK-EQCDLLVCGHH 112 (142)
T ss_pred HHHHH-cCCCEEEEeCC
Confidence 34444 47999998873
No 312
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=21.89 E-value=4.4e+02 Score=21.42 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC--C-CccEEEeCCccc
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS--K-HVSIVVGGHSHT 64 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~--~-~iDvIlgGH~H~ 64 (148)
+.+.+.+.+|+++ |+-+.|+- ...-..-..+.+.+ + -+|+|+++.+..
T Consensus 151 p~V~EtL~eLkek-GikLaIvT-Ng~Re~v~~~Le~lgL~~yFDvII~~g~i~ 201 (303)
T PHA03398 151 PFVYDSLDELKER-GCVLVLWS-YGNREHVVHSLKETKLEGYFDIIICGGRKA 201 (303)
T ss_pred hhHHHHHHHHHHC-CCEEEEEc-CCChHHHHHHHHHcCCCccccEEEECCCcc
Confidence 4567889999998 77555544 33222223344433 3 368888776543
No 313
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=21.87 E-value=1.1e+02 Score=24.97 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=23.1
Q ss_pred echHHHHHHHHHHHhhcCC--CCEEEEEeCCC
Q psy11241 11 LDEITSVNKEADRLVREDK--VDIVIALSHAG 40 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g--~D~iI~lsH~g 40 (148)
....+.+.+.++.+|+. + +|+||++.-..
T Consensus 61 ~pt~~~v~~~~~~~~~~-~~~~D~IIaiGGGS 91 (355)
T TIGR03405 61 NPDVAQLDGLYARLWGD-EGACDLVIALGGGS 91 (355)
T ss_pred CcCHHHHHHHHHHHHhc-CCCCCEEEEeCCcc
Confidence 34577888888888887 6 99999997654
No 314
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.85 E-value=1.2e+02 Score=23.73 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=29.4
Q ss_pred CeEEechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC
Q psy11241 7 NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS 51 (148)
Q Consensus 7 ~v~f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~ 51 (148)
+++++..+.+....++. |+.+|+|+|+..+...-. -++||+++
T Consensus 36 nITisSIiPTT~~eIA~-raaeGADlvlIATDaD~~-GReLA~kf 78 (290)
T COG4026 36 NITISSIIPTTNVEIAK-RAAEGADLVLIATDADRV-GRELAEKF 78 (290)
T ss_pred eeEEEeeccCchHHHHH-HhhccCCEEEEeecCcch-hHHHHHHH
Confidence 67777877777777665 444499999888876432 35666654
No 315
>PLN02282 phosphoglycerate kinase
Probab=21.83 E-value=1.2e+02 Score=25.60 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCch
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVD 42 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~ 42 (148)
+.++-..++.|-++ |+ .||++||+|-+
T Consensus 42 I~a~lpTI~~l~~~-ga-kvVl~SHlGRP 68 (401)
T PLN02282 42 IRAAVPTIKYLMGH-GA-RVILCSHLGRP 68 (401)
T ss_pred HHHHHHHHHHHHHC-CC-eEEEEecCCCC
Confidence 44555566666666 67 48999999976
No 316
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.67 E-value=2.1e+02 Score=23.12 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHA 39 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~ 39 (148)
...+.+.+.++.+|+. ++|.||++.-.
T Consensus 60 p~~~~v~~~~~~~~~~-~~D~iIavGGG 86 (347)
T cd08172 60 CSEENIERLAAQAKEN-GADVIIGIGGG 86 (347)
T ss_pred CCHHHHHHHHHHHHhc-CCCEEEEeCCc
Confidence 4566777777777776 67777777654
No 317
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=21.63 E-value=3e+02 Score=21.56 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCch--hh------HHHHhhCCCccEEEe
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVD--LD------QTVAKASKHVSIVVG 59 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~--~d------~~la~~~~~iDvIlg 59 (148)
+.+.+.++..++. |+|.++++.-.-+. ++ +.+++.+|++.+++-
T Consensus 83 ~~ai~~a~~a~~~-Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 83 KESQELAKHAEEL-GYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred HHHHHHHHHHHHc-CCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3444455555555 78887776554332 11 345666666777774
No 318
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=21.62 E-value=38 Score=21.22 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=7.5
Q ss_pred cEEEeCCcc
Q psy11241 55 SIVVGGHSH 63 (148)
Q Consensus 55 DvIlgGH~H 63 (148)
|++++||+=
T Consensus 4 DliFSGHt~ 12 (74)
T PF14360_consen 4 DLIFSGHTA 12 (74)
T ss_pred CEEEchhHH
Confidence 889999874
No 319
>KOG3361|consensus
Probab=21.51 E-value=1.5e+02 Score=21.24 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=28.5
Q ss_pred eEEEEecCccccceeEEEEEEecCCCEEEEeceEEecCCCCC
Q psy11241 94 QVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDKHIQ 135 (148)
Q Consensus 94 ~~~vvq~g~~g~~lg~l~l~~~~~g~v~~~~~~~i~~~~~~~ 135 (148)
+|-+|-+-.-|. +-++.|.+|++|+|.+..+...-..+.|.
T Consensus 54 GtGlVGAPACGD-VMkLqIkvd~~g~I~dakFKTFGCGSAIA 94 (157)
T KOG3361|consen 54 GTGLVGAPACGD-VMKLQIKVDDSGVIEDAKFKTFGCGSAIA 94 (157)
T ss_pred ccccccCccccc-eeeEEEEECCCCcEEEeeeeecccchHhh
Confidence 466666666664 55899999989999888877654433333
No 320
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.36 E-value=83 Score=25.19 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=10.9
Q ss_pred eEEEEecCc----cccceeEEEE
Q psy11241 94 QVLVVQAAA----YSRYLGLIHL 112 (148)
Q Consensus 94 ~~~vvq~g~----~g~~lg~l~l 112 (148)
+.+++-.|- .|+.+|.+++
T Consensus 222 GavVIDvGin~~~~gkl~GDVd~ 244 (282)
T PRK14166 222 GVIVVDVGINRLESGKIVGDVDF 244 (282)
T ss_pred CCEEEEecccccCCCCeeCCCCH
Confidence 566666662 3566666553
No 321
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=21.30 E-value=1.2e+02 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEe-CC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALS-HA 39 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~ls-H~ 39 (148)
..+++.+++.+++++. ++|.||++| |.
T Consensus 31 ~~~~al~~l~~~l~~~-~Pd~IVViS~H~ 58 (282)
T TIGR02298 31 GAIDGHKEISRRAKEM-GVDTIVVFDTHW 58 (282)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEEEECCCC
Confidence 3456777777788765 799999984 53
No 322
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=21.21 E-value=1.3e+02 Score=23.71 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeC
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSH 38 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH 38 (148)
+++.+++.++|++. ++|.||++|=
T Consensus 29 ~~a~~~l~~~l~~~-~Pd~IvvvS~ 52 (272)
T cd07362 29 IKGMKEIRKRIEEL-KPDVILVISC 52 (272)
T ss_pred HHHHHHHHHHhhHc-CCCEEEEECC
Confidence 45666677777765 6999999964
No 323
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=21.12 E-value=3.8e+02 Score=21.55 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=32.7
Q ss_pred echHHHHHHHHHHHhhcCCCCEEEEEeCCCchhh--HHHH----hhCCCccEEE
Q psy11241 11 LDEITSVNKEADRLVREDKVDIVIALSHAGVDLD--QTVA----KASKHVSIVV 58 (148)
Q Consensus 11 ~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d--~~la----~~~~~iDvIl 58 (148)
.+..+++.+++++|..+ +..+|-++.-.+..+. ..|+ +.+|++++-+
T Consensus 246 ~~~~~~~~~ll~~l~~~-~~elvTi~~G~~~~~~~a~~l~~~l~~~~p~~eve~ 298 (313)
T PF13684_consen 246 KDLEEALKKLLEKLLDE-DGELVTIYYGEDVSEEEAEALAEFLEEKYPDVEVEV 298 (313)
T ss_pred CCHHHHHHHHHHHhhcc-CCeEEEEEecCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 46788999999999877 7888888877665543 3343 3456766544
No 324
>PRK13938 phosphoheptose isomerase; Provisional
Probab=21.06 E-value=3.6e+02 Score=20.10 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=23.6
Q ss_pred CCCEEEEEeCCCchhhH----HHHhhCCCccE-EEeCCcccee
Q psy11241 29 KVDIVIALSHAGVDLDQ----TVAKASKHVSI-VVGGHSHTFL 66 (148)
Q Consensus 29 g~D~iI~lsH~g~~~d~----~la~~~~~iDv-IlgGH~H~~~ 66 (148)
.-|++|++|+.|...+. +.|++ .|+-+ .++|.....+
T Consensus 113 ~~DllI~iS~SG~t~~vi~a~~~Ak~-~G~~vI~iT~~~~s~L 154 (196)
T PRK13938 113 PGDTLFAISTSGNSMSVLRAAKTARE-LGVTVVAMTGESGGQL 154 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH-CCCEEEEEeCCCCChh
Confidence 37999999999977652 34444 35544 4466655444
No 325
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=21.00 E-value=3.7e+02 Score=21.81 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC--CC-ccEEEeCCccce
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS--KH-VSIVVGGHSHTF 65 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~--~~-iDvIlgGH~H~~ 65 (148)
+.+.+.+++|+++ |+-+.|+ |..+........+.+ .. +|+|++|.....
T Consensus 149 PgV~EaL~~Lkek-GikLaIa-TS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~ 200 (301)
T TIGR01684 149 PRIYDSLTELKKR-GCILVLW-SYGDRDHVVESMRKVKLDRYFDIIISGGHKAE 200 (301)
T ss_pred HHHHHHHHHHHHC-CCEEEEE-ECCCHHHHHHHHHHcCCCcccCEEEECCcccc
Confidence 5677899999998 7755554 444433333343433 32 578887766533
No 326
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=21.00 E-value=1.4e+02 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeC
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSH 38 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH 38 (148)
.++.+++.+++++. ++|+||++|=
T Consensus 28 ~~al~~~~~~l~~~-~Pd~ivvis~ 51 (268)
T cd07367 28 VQGMAEIGRRVRES-RPDVLVVISS 51 (268)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEeC
Confidence 44555566666655 6999999964
No 327
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=20.88 E-value=1.9e+02 Score=22.81 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=27.7
Q ss_pred EechHHHHHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCc
Q psy11241 10 ILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHS 62 (148)
Q Consensus 10 f~d~~~~~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~ 62 (148)
|.|+ +.+++....|-.+ |||+|...+...-..-.+-|++....+.++|-++
T Consensus 171 ~~D~-~~~~~~a~~li~~-GaDvI~~~ag~~~~gv~~aa~e~g~~~~~IG~d~ 221 (306)
T PF02608_consen 171 FNDP-AKAKEAAEALIDQ-GADVIFPVAGGSGQGVIQAAKEAGVYGYVIGVDS 221 (306)
T ss_dssp SS-H-HHHHHHHHHHHHT-T-SEEEEE-CCCHHHHHHHHHHHTHETEEEEEES
T ss_pred cCch-HHHHHHHHHHhhc-CCeEEEECCCCCchHHHHHHHHcCCceEEEEecc
Confidence 4455 5667777777777 8999988776544333344444322224565433
No 328
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.87 E-value=2.4e+02 Score=19.91 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCch
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALSHAGVD 42 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~lsH~g~~ 42 (148)
-....+.++..++. ++|+|-+-+.++..
T Consensus 38 ~v~~e~~v~aa~~~-~adiVglS~l~~~~ 65 (134)
T TIGR01501 38 LSPQEEFIKAAIET-KADAILVSSLYGHG 65 (134)
T ss_pred CCCHHHHHHHHHHc-CCCEEEEecccccC
Confidence 34556677777776 79988776666643
No 329
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=20.75 E-value=1e+02 Score=19.80 Aligned_cols=22 Identities=36% Similarity=0.308 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEe
Q psy11241 15 TSVNKEADRLVREDKVDIVIALS 37 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~ls 37 (148)
.++.+.++.||+. |+++-.+-.
T Consensus 34 taVwK~Iq~Lr~~-G~~I~s~~~ 55 (79)
T COG1654 34 TAVWKHIQQLREE-GVDIESVRG 55 (79)
T ss_pred HHHHHHHHHHHHh-CCceEecCC
Confidence 5778899999988 888765543
No 330
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=20.67 E-value=2.9e+02 Score=23.27 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCc
Q psy11241 17 VNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHS 62 (148)
Q Consensus 17 ~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~ 62 (148)
+...+.+++.+ +.. ||+..=+.. ...++.+..|++|+|+|-+.
T Consensus 63 ~~~~i~~~~~~-~~~-ivv~GC~a~-~~~~~~~~~~~v~~v~g~~~ 105 (440)
T PRK14862 63 SLEAIGEALAE-NGK-VIVTGCLGA-KEDQIREVHPKVLAVTGPHA 105 (440)
T ss_pred HHHHHHHHHhc-CCC-EEEECCccc-CHHHHHhhCCCceEEECCCC
Confidence 34445555544 343 444433332 23567676799999987654
No 331
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=20.66 E-value=2.7e+02 Score=18.42 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCC-ccEEEeCCcccee
Q psy11241 17 VNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKH-VSIVVGGHSHTFL 66 (148)
Q Consensus 17 ~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~-iDvIlgGH~H~~~ 66 (148)
+.+..+.+|+. ++|+|.+-+=.+..---.+|....+ +=+|+.-|....+
T Consensus 63 ~~~l~k~ik~~-~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~~~ 112 (139)
T PF13477_consen 63 YFRLRKIIKKE-KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSDFY 112 (139)
T ss_pred HHHHHHHhccC-CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCeee
Confidence 44666777776 8999985543222222345666666 7888888854333
No 332
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=20.55 E-value=2.2e+02 Score=17.41 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=19.6
Q ss_pred CCCEEEEEeCCCchhhHHHHhhCCCccEEEeCCccce
Q psy11241 29 KVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTF 65 (148)
Q Consensus 29 g~D~iI~lsH~g~~~d~~la~~~~~iDvIlgGH~H~~ 65 (148)
+..++.+....-+..-.+.|++ .++|+|+.||.-..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~a~~-~~~~~Iv~G~~~~d 60 (86)
T cd01984 25 GPEVVALVVVAFVRILKRLAAE-EGADVIILGHNADD 60 (86)
T ss_pred CCCEEEEEeHHHHHHHHHHHHH-cCCCEEEEcCCchh
Confidence 4555555544111112334444 47999999986433
No 333
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=20.48 E-value=1.2e+02 Score=24.71 Aligned_cols=23 Identities=13% Similarity=0.411 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeC
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSH 38 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH 38 (148)
++.+++.+.+++. ++|+||+++-
T Consensus 73 ~a~~~~~~~i~~~-~PDvlVIisp 95 (328)
T cd07366 73 AALDRLADFIRAA-RIDVAVIVGD 95 (328)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEcC
Confidence 4556666677777 7999999974
No 334
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=20.48 E-value=2.1e+02 Score=23.92 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=4.9
Q ss_pred CCCEEEEEeCCC
Q psy11241 29 KVDIVIALSHAG 40 (148)
Q Consensus 29 g~D~iI~lsH~g 40 (148)
|||.|++-.|.|
T Consensus 274 G~d~I~vsnhGG 285 (383)
T cd03332 274 GVDGVVVSNHGG 285 (383)
T ss_pred CCCEEEEcCCCC
Confidence 344444444433
No 335
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=20.44 E-value=1.3e+02 Score=25.17 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=8.9
Q ss_pred HHHHHhhcCCCCEEEEEeCCC
Q psy11241 20 EADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 20 ~v~~lr~~~g~D~iI~lsH~g 40 (148)
.+++.|+.-|+|.||++.-..
T Consensus 20 ~i~~~k~~~~ad~ii~vMSGn 40 (388)
T PF05636_consen 20 QIEQAKKITGADVIIAVMSGN 40 (388)
T ss_dssp HHHHHH---TSSEEEEEE--T
T ss_pred HHHHHhccCCCCEEEEEECCC
Confidence 345555444677665554443
No 336
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=20.41 E-value=2.4e+02 Score=19.20 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhCCC
Q psy11241 17 VNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKH 53 (148)
Q Consensus 17 ~~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~~~ 53 (148)
++..++.|+..-..+-.|++.+.|+...+.+++.++.
T Consensus 80 ~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 80 LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG
T ss_pred hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC
Confidence 3445555654323556888999999888888888755
No 337
>PRK15005 universal stress protein F; Provisional
Probab=20.38 E-value=1.3e+02 Score=20.22 Aligned_cols=8 Identities=0% Similarity=0.177 Sum_probs=5.0
Q ss_pred CccEEEeC
Q psy11241 53 HVSIVVGG 60 (148)
Q Consensus 53 ~iDvIlgG 60 (148)
++|+|+-|
T Consensus 107 ~~DLIV~G 114 (144)
T PRK15005 107 PADMIIIA 114 (144)
T ss_pred CCCEEEEe
Confidence 56666655
No 338
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=20.36 E-value=2.5e+02 Score=23.13 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=9.9
Q ss_pred CCCEEEEEeCCCch
Q psy11241 29 KVDIVIALSHAGVD 42 (148)
Q Consensus 29 g~D~iI~lsH~g~~ 42 (148)
|+|.|++-.|.|..
T Consensus 242 G~d~I~vsnhGGr~ 255 (351)
T cd04737 242 GADGIWVSNHGGRQ 255 (351)
T ss_pred CCCEEEEeCCCCcc
Confidence 77777777776644
No 339
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=20.33 E-value=1.2e+02 Score=24.91 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy11241 13 EITSVNKEADRLVREDKVDIVIALSHAG 40 (148)
Q Consensus 13 ~~~~~~~~v~~lr~~~g~D~iI~lsH~g 40 (148)
..+.+.+.++.+|+. ++|+||++.-..
T Consensus 70 ~~~~v~~~~~~~~~~-~~d~IIaiGGGs 96 (377)
T cd08188 70 RDEEVMAGAELYLEN-GCDVIIAVGGGS 96 (377)
T ss_pred CHHHHHHHHHHHHhc-CCCEEEEeCCch
Confidence 367788888888887 799999987643
No 340
>PRK00587 hypothetical protein; Provisional
Probab=20.30 E-value=1.3e+02 Score=20.13 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=19.7
Q ss_pred eEEEEEEecCCCEEEEeceEEecCCCCCCCHHHH
Q psy11241 108 GLIHLQYNDKGNIVSWRGDPILLDKHIQEGNIVV 141 (148)
Q Consensus 108 g~l~l~~~~~g~v~~~~~~~i~~~~~~~~D~~i~ 141 (148)
|.+.++++-++++++++..+-.++ +.|+++.
T Consensus 35 GlVkV~~nG~~~i~~i~Idp~lld---~eD~E~L 65 (99)
T PRK00587 35 KYILIKIKGNLNIEKIEINKELID---PEDKETL 65 (99)
T ss_pred CeEEEEEEcCccEEEEEECHHHcC---CccHHHH
Confidence 568888876778887775544333 3566643
No 341
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.27 E-value=1.3e+02 Score=22.14 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=24.0
Q ss_pred HHHHHHHhhcCCCCEEEEEeCCCchhhHHHHhhC
Q psy11241 18 NKEADRLVREDKVDIVIALSHAGVDLDQTVAKAS 51 (148)
Q Consensus 18 ~~~v~~lr~~~g~D~iI~lsH~g~~~d~~la~~~ 51 (148)
.+..++++++ |+|-|+|+|=...-.-...++..
T Consensus 62 ~~~~d~f~~k-GVD~I~cVSVND~FVm~AWak~~ 94 (165)
T COG0678 62 LELADEFKAK-GVDEIYCVSVNDAFVMNAWAKSQ 94 (165)
T ss_pred HHHHHHHHHc-CCceEEEEEeCcHHHHHHHHHhc
Confidence 4567788888 99999999976544445666654
No 342
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=20.23 E-value=2.5e+02 Score=20.82 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy11241 12 DEITSVNKEADRLVREDKVDIVIALSHA 39 (148)
Q Consensus 12 d~~~~~~~~v~~lr~~~g~D~iI~lsH~ 39 (148)
|+.+.+++.+++++.+ ++|+|++=|=.
T Consensus 67 ~~~~~~~~~l~~~~~~-~~D~vlIDT~G 93 (196)
T PF00448_consen 67 DPAEIAREALEKFRKK-GYDLVLIDTAG 93 (196)
T ss_dssp CHHHHHHHHHHHHHHT-TSSEEEEEE-S
T ss_pred hhHHHHHHHHHHHhhc-CCCEEEEecCC
Confidence 6788888888888887 79998876643
No 343
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=20.09 E-value=1.4e+02 Score=23.39 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEe
Q psy11241 14 ITSVNKEADRLVREDKVDIVIALS 37 (148)
Q Consensus 14 ~~~~~~~v~~lr~~~g~D~iI~ls 37 (148)
.++.+++.+++++. ++|.||++|
T Consensus 28 ~~a~~~lg~~l~~~-~Pd~IvviS 50 (271)
T cd07373 28 AAATRQAGKALAAS-RPDVVLVYS 50 (271)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEC
Confidence 35667777777765 699999884
No 344
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=20.08 E-value=1.9e+02 Score=21.31 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCchh------hHHHHhhC--CCccEEEeCCccc
Q psy11241 15 TSVNKEADRLVREDKVDIVIALSHAGVDL------DQTVAKAS--KHVSIVVGGHSHT 64 (148)
Q Consensus 15 ~~~~~~v~~lr~~~g~D~iI~lsH~g~~~------d~~la~~~--~~iDvIlgGH~H~ 64 (148)
.++.+..+.+... ..+|++-.|.|+.+ |.++-+.+ .|.++.-+.|.-.
T Consensus 39 ~tA~k~lemveg~--lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~sHalS 94 (186)
T COG1751 39 YTALKALEMVEGD--LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQSHALS 94 (186)
T ss_pred HHHHHHHHhcccC--ceEEEEEeecccccCCceecCHHHHHHHHHcCceeeeehhhhh
Confidence 4555555555443 66777777788753 22222222 4666666655443
Done!