RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11241
(148 letters)
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase,
structural genomics, NPPSFA; HET: THM; 1.75A {Thermus
thermophilus} SCOP: d.114.1.1 d.159.1.2
Length = 552
Score = 139 bits (352), Expect = 6e-40
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 1 NIASTG-NLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG 59
I++ G + LD S K L V+ ++ LSH G D +A+ V ++VG
Sbjct: 178 EISNPGPTVAFLDPYESAQKAVYEL-LAKGVNKIVVLSHLGYGEDLKLARRLVGVQVIVG 236
Query: 60 GHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGN 119
GHSHT L S P GPYP VV + + + VLVVQA + + +GL+ + ++ KG
Sbjct: 237 GHSHTLLGSFPH--KELSPAGPYPTVVKNP-EGKDVLVVQAWEWGKVVGLLEVTFDAKGE 293
Query: 120 IVSWRGDPILLDK 132
+++++G+ +L+
Sbjct: 294 LLAYKGEALLMTP 306
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN
nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A
{Haemophilus influenzae} PDB: 3zu0_A*
Length = 579
Score = 130 bits (329), Expect = 1e-36
Identities = 28/127 (22%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTF 65
+++ DEI + A+ L ++ ++ +I LSHAG + + +A+ + ++V G SH
Sbjct: 172 KDVKFYDEIATAQIMANAL-KQQGINKIILLSHAGSEKNIEIAQKVNDIDVIVTGDSHYL 230
Query: 66 LYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRG 125
+ + YP+ + + V V++ AYS +G + ++++ +G R
Sbjct: 231 YGNDELRSLKLPVIYEYPLEFKNP-NGEPVFVMEGWAYSAVVGDLGVKFSPEGIASITRK 289
Query: 126 DPILLDK 132
P +L
Sbjct: 290 IPHVLMS 296
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 117 bits (294), Expect = 1e-31
Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 16/143 (11%)
Query: 3 ASTGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVD----------LDQTVAKA-- 50
++ L + +K DI+IA +H G D +A+A
Sbjct: 157 EYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALP 216
Query: 51 SKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLI 110
+ ++++VGGHS + K P + +VQA + +Y+G
Sbjct: 217 AGSLAMIVGGHSQDPVCMAAEN---KKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRA 273
Query: 111 HLQYND-KGNIVSWRGDPILLDK 132
++ + + +V+++ P+ L K
Sbjct: 274 DFEFRNGEMKMVNYQLIPVNLKK 296
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics,
PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus
subtilis subsp}
Length = 341
Score = 96.7 bits (241), Expect = 5e-25
Identities = 27/140 (19%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ----------TVAKASKHVS 55
G +++ D + S N+ ++ + + D++IAL+H G++ +A +K +
Sbjct: 185 GQVQVQDIVESANETIPKM-KAEGADVIIALAHTGIEKQAQSSGAENAVFDLATKTKGID 243
Query: 56 IVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYN 115
++ GH H P + G V N + VV +++ +YLG+I L+
Sbjct: 244 AIISGHQHGLF-------PSAEYAGVAQFNVEKGTIN-GIPVVMPSSWGKYLGVIDLKLE 295
Query: 116 DKGN---IVSWRGDPILLDK 132
+ +G +
Sbjct: 296 KADGSWKVADSKGSIESIAG 315
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6}
PDB: 3ivd_A*
Length = 509
Score = 96.6 bits (241), Expect = 2e-24
Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 41/151 (27%)
Query: 1 NIASTGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGV----------------DLD 44
+ A+ + DEI + + D L + KVD+ +AL H GV D D
Sbjct: 159 SAATRVGIEARDEIKWLQRYIDEL--KGKVDLTVALIHEGVPARQSSMGGTDVRRALDKD 216
Query: 45 QTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYS 104
A K + I++ GH+H P PI V L++ +
Sbjct: 217 IQTASQVKGLDILITGHAHVGT--------------PEPIKVG------NTLILSTDSGG 256
Query: 105 RYLGLIHLQYNDKGN---IVSWRGDPILLDK 132
+G + L Y +K + + ++ I D+
Sbjct: 257 IDVGKLVLDYKEKPHNFTVKNFELKTIYADE 287
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase
bifunctional periplasmic...; APC63187.2; HET: EPE TAM;
2.43A {Klebsiella pneumoniae subsp}
Length = 339
Score = 89.0 bits (221), Expect = 4e-22
Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 21/147 (14%)
Query: 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQ---------TVAKASKHVSI 56
G + + D + K + R D+V+ ++H+G+ D V
Sbjct: 179 GKVTVNDITETARKYIPEM-RAKGADVVVVVAHSGLSADPYQAMAENSVYYLSQVPGVDA 237
Query: 57 VVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYND 116
++ GH+H P + N V V + +LG++ L N+
Sbjct: 238 IMFGHAHAVF-------PGKDFANIKGADIAKGTLN-GVPAVMPGMWGDHLGVVDLVLNN 289
Query: 117 KGN---IVSWRGDPILLDKHIQEGNIV 140
+ + + + + + ++
Sbjct: 290 DSGKWQVTQSKAEARPIYDAVAKKSLA 316
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis,
sulfur oxidation pathway, Cys S-thiosulfonate,
hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A*
2wde_A 2wdf_A
Length = 562
Score = 74.5 bits (183), Expect = 1e-16
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 22/127 (17%)
Query: 5 TGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHT 64
T L + + + D+ R + + V+ LSH G+ LD +A+ + + +++ GH+H
Sbjct: 231 TEGLSFALDERRLQEAVDKA-RAEGANAVVLLSHNGMQLDAALAERIRGIDLILSGHTHD 289
Query: 65 FLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWR 124
P P V + +V +A + L + L+ KG I + R
Sbjct: 290 LT--------------PRPWRV------GKTWIVAGSAAGKALMRVDLKL-WKGGIANLR 328
Query: 125 GDPILLD 131
+ +
Sbjct: 329 VRVLPVL 335
>3qfk_A Uncharacterized protein; structural genomics, center for structural
genomics of infec diseases, csgid, phosphoesterase,
hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus
subsp}
Length = 527
Score = 74.3 bits (183), Expect = 1e-16
Identities = 21/151 (13%), Positives = 41/151 (27%), Gaps = 43/151 (28%)
Query: 5 TGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLD-----------------QTV 47
+L + + + + DI++ H G + D +
Sbjct: 176 IQSLTFHSAFEILQQYLPEM--KRHADIIVVCYHGGFEKDLESGTPTEVLTGENEGYAML 233
Query: 48 AKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYL 107
SK + I + GH H +Q V+Q +
Sbjct: 234 EAFSKDIDIFITGHQHR----------------QIAERF------KQTAVIQPGTRGTTV 271
Query: 108 GLIHLQYNDKGNIV--SWRGDPILLDKHIQE 136
G + L ++ N+ S P++ D
Sbjct: 272 GRVVLSTDEYENLSVESCELLPVIDDSTFTI 302
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR
initiative, PSI-2, NEW YORK SGX research center for
structu genomics, nysgxrc; 1.90A {Candida albicans}
SCOP: d.114.1.1 d.159.1.2
Length = 557
Score = 45.0 bits (106), Expect = 2e-06
Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 30/132 (22%)
Query: 5 TGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKH---------VS 55
R+ ++++ + + +VD++I + H + + +
Sbjct: 173 NSGTRVTPMAETIHEPWFQEALKHEVDLIIIVGHTPISHNWGEFYQVHQYLRQFFPDTII 232
Query: 56 IVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYN 115
GGHSH I + D+ +Q+ Y +G + +
Sbjct: 233 QYFGGHSH--------------------IRDFTVFDSLST-GLQSGRYCETVGWTSVNLD 271
Query: 116 DKGNIVSWRGDP 127
+ R
Sbjct: 272 KADLNLPVRQRF 283
>3tg0_A Apase, alkaline phosphatase; hydrolase; 1.20A {Escherichia coli}
PDB: 1b8j_A 1ed9_A 1ew8_A 1ew9_A 1ed8_A 1y6v_A 3bdg_B
1elx_A 2g9y_A 2ga3_A* 3bdh_A 3cmr_A 1elz_A 1hjk_A*
1hqa_A 1ely_A 3dyc_A 1ali_A 1alj_A 3bdf_A ...
Length = 449
Score = 31.3 bits (71), Expect = 0.082
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 8/56 (14%)
Query: 31 DIVIALSHAGVDLDQTVAKASKHVS-------IVVGGHSHTFLYSGKPPCPHDKPK 79
+ + VDLD+ V +A + IV H+H +
Sbjct: 334 NPCGQI-GETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQ 388
>1zed_A Alkaline phosphatase; phosphoserine, substrate analog, hydro; HET:
NAG PNP; 1.57A {Homo sapiens} SCOP: c.76.1.1 PDB:
1zeb_A* 1zef_A* 2glq_A* 3mk0_A* 3mk1_A* 3mk2_A* 1ew2_A*
Length = 484
Score = 30.2 bits (68), Expect = 0.20
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 31 DIVIALSHAGVDLDQTVAKASKHVS------IVVGGHSHTFLYSGKPP 72
AL + D + +A + S +V HSH F + G P
Sbjct: 323 RAYRAL-TETIMFDDAIERAGQLTSEEDTLSLVTADHSHVFSFGGYPL 369
>3n0w_A ABC branched chain amino acid family transporter, periplasmic
ligand binding protein...; receptor family ligand
binding region; HET: MSE; 1.88A {Burkholderia
xenovorans}
Length = 379
Score = 30.0 bits (68), Expect = 0.28
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 21 ADRLVREDKVDIVIALSHAGVDL-DQTVAKASKHVSIVVGGHS 62
A D VD + + ++G L + K K ++ + +
Sbjct: 65 AREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAA 107
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor
family ligand binding region, structural genomics; HET:
MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Length = 374
Score = 28.9 bits (65), Expect = 0.67
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 21 ADRLVREDKVDIVIALSHAGVDL-DQTVAKASKHVSIVVGGHS 62
++D DI I S + L D VA+ +K + IV +
Sbjct: 65 LAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVA 107
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I
periplasmic binding protein, structural genomics, JOI
for structural genomics; HET: MSE CIT; 1.80A
{Burkholderia mallei}
Length = 375
Score = 28.9 bits (65), Expect = 0.70
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 21 ADRLVREDKVDIVIALSHAGVDLD-QTVAKASKHVSIVVGGHS 62
A + +D+++ +++ L VA K V I +G +
Sbjct: 63 AREWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGA 105
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication;
2.46A {Deinococcus radiodurans}
Length = 578
Score = 27.4 bits (60), Expect = 1.9
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 17/84 (20%)
Query: 1 NIASTGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVA-----KASKHVS 55
+I G+L D++ ++D V+ H+ LD +A H
Sbjct: 403 DILDDGSLDFPDDV------------LGELDYVVVSVHSNFTLDAARQTERLIRAVSHPL 450
Query: 56 IVVGGHSHTFLYSGKPPCPHDKPK 79
+ V GH+ L +P D
Sbjct: 451 VTVLGHATGRLLLRRPGYALDLDA 474
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
{Thermoproteus tenax} SCOP: c.1.1.1
Length = 226
Score = 26.8 bits (60), Expect = 2.3
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG 59
+ K A+R RE V+IV+A +H ++L S+ V I V
Sbjct: 19 KRAVELAKAAERAARELGVNIVVAPNH--LELGL----VSQSVDIPVY 60
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} SCOP: c.1.1.1
Length = 225
Score = 26.9 bits (60), Expect = 2.3
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGG 60
+ K A+++ +E V IV+A VDL ++ V I V
Sbjct: 22 KRALEIAKAAEKVYKETGVTIVVAPQL--VDL----RMIAESVEIPVFA 64
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein
structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 1.75A {Vibrio
parahaemolyticus}
Length = 214
Score = 26.0 bits (57), Expect = 5.2
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 32 IVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYP 83
I + + ++ + VA ++ V GG H G + Y
Sbjct: 6 IALMMENSQAAKNAMVA---GELNSVAGGLGHDVFNVG--MTDENDHHLTYI 52
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 1.68A {Escherichia coli} SCOP:
c.116.1.3
Length = 155
Score = 25.5 bits (57), Expect = 5.6
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 19 KEADRLVREDKVDIVIALSHAGVDLD--------QTVAKASKHVSIVVGG 60
KE ++++ + ++ L G D + + VS+++GG
Sbjct: 55 KEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLIGG 104
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
binding; 2.8A {Sulfolobus solfataricus}
Length = 268
Score = 25.8 bits (57), Expect = 6.1
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 73 CPHDKPKGPYPIVVTSSV-DNRQVLVVQ 99
CP G + ++ + + Q V+Q
Sbjct: 171 CPKCGKPGQFRLIPEKTKLIDWQKAVIQ 198
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A
{Methanocaldococcus jannaschii}
Length = 219
Score = 25.6 bits (57), Expect = 6.6
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVG 59
+ + K A+++ E + I +A VDL ++V+I V
Sbjct: 16 NRGLEIAKIAEKVSEESGITIGVAPQF--VDLRM----IVENVNIPVY 57
>4e3a_A Sugar kinase protein; structural genomics, protein structure
initiative, nysgrc, S kinase, PSI-biology; HET: ADN;
1.63A {Rhizobium etli} PDB: 3ubo_A*
Length = 352
Score = 25.7 bits (57), Expect = 7.1
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 23 RLVREDKVDIVIA-----LSHAGV-DLDQTVAKASKHVSIVV 58
L+R KVDIV A LS D ++ + + + I
Sbjct: 224 DLMRSGKVDIVFANRQEALSLYQTDDFEEALNRIAADCKIAA 265
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 25.7 bits (57), Expect = 7.9
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 73 CPHDKPKGPYPIVVTSSV-DNRQVLVVQ 99
CP G + ++ + + Q V+Q
Sbjct: 165 CPKCGKPGQFRLIPEKTKLIDWQKAVIQ 192
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A
{Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A
1qnl_A
Length = 385
Score = 25.4 bits (56), Expect = 8.0
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 19 KEADRLVREDKVDIVI 34
A+ +R V ++
Sbjct: 65 LCAEDFIRNRGVRFLV 80
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 25.7 bits (57), Expect = 8.5
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 22 DRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGH 61
++ V+ V D+ V A H+S VV GH
Sbjct: 2 EKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGH 41
>4evq_A Putative ABC transporter subunit, substrate-bindi component;
structural genomics, PSI-biology, midwest center for
structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas
palustris} PDB: 4evr_A
Length = 375
Score = 25.4 bits (56), Expect = 8.8
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 21 ADRLVREDKVDIVIALSHAGVDL-DQTVAKASKHVSIVVGG 60
+L++ +K D++I H+GV + +A+ +IV
Sbjct: 74 TTKLIQSEKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNA 114
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken
structural genomics/proteomics in RSGI, polxc, PHP, DRP
lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB:
3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Length = 575
Score = 25.5 bits (55), Expect = 9.2
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 17/81 (20%)
Query: 1 NIASTGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLD-----QTVAKASKHVS 55
+I G L D + ++D+V+ H+ +L + + KA ++
Sbjct: 415 DIHPDGTLDYPDWV------------LRELDLVLVSVHSRFNLPKADQTKRLLKALENPF 462
Query: 56 IVVGGHSHTFLYSGKPPCPHD 76
+ V H L + P D
Sbjct: 463 VHVLAHPTARLLGRRAPIEAD 483
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG,
midwest center for structural genomics, transporter;
HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB:
4ey3_A* 3t0n_A* 4eyk_A*
Length = 368
Score = 25.4 bits (56), Expect = 9.6
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 15 TSVNKEADRLVREDKVDIVIALSHAGV 41
+ A L+ DKV+++
Sbjct: 59 NTKRL-AQELIVNDKVNVIAGFGITPA 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,315,845
Number of extensions: 134888
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 43
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)