RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11241
(148 letters)
>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Thermus thermophilus
[TaxId: 274]}
Length = 302
Score = 82.3 bits (202), Expect = 3e-20
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTF 65
+ LD S K L V+ ++ LSH G D +A+ V ++VGGHSHT
Sbjct: 157 PTVAFLDPYESAQKAVYEL-LAKGVNKIVVLSHLGYGEDLKLARRLVGVQVIVGGHSHTL 215
Query: 66 LYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRG 125
L G P P GPYP VV + + + VLVVQA + + +GL+ + ++ KG +++++G
Sbjct: 216 L--GSFPHKELSPAGPYPTVVKNP-EGKDVLVVQAWEWGKVVGLLEVTFDAKGELLAYKG 272
Query: 126 DPILLD 131
+ +L+
Sbjct: 273 EALLMT 278
>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 337
Score = 72.3 bits (176), Expect = 2e-16
Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 6 GNLRILDEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKH------------ 53
++ L + +K DI+IA +H G + +
Sbjct: 160 TDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGS 219
Query: 54 VSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQ 113
++++VGGHS + + K P + +VQA + +Y+G +
Sbjct: 220 LAMIVGGHSQDPVC---MAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFE 276
Query: 114 YND-KGNIVSWRGDPILLDKHIQE 136
+ + + +V+++ P+ L K +
Sbjct: 277 FRNGEMKMVNYQLIPVNLKKKVTW 300
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Candida albicans [TaxId:
5476]}
Length = 322
Score = 47.8 bits (113), Expect = 7e-08
Identities = 17/129 (13%), Positives = 41/129 (31%), Gaps = 30/129 (23%)
Query: 5 TGNLRILDEITSVNKEADRLVREDKVDIVIALSHAGV--------DLDQTVAKASKHVSI 56
R+ ++++ + + +VD++I + H + + Q + + I
Sbjct: 169 NSGTRVTPMAETIHEPWFQEALKHEVDLIIIVGHTPISHNWGEFYQVHQYLRQFFPDTII 228
Query: 57 VV-GGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYN 115
GGHSH + +V + +Q+ Y +G + +
Sbjct: 229 QYFGGHSHIRDF---------------------TVFDSLSTGLQSGRYCETVGWTSVNLD 267
Query: 116 DKGNIVSWR 124
+ R
Sbjct: 268 KADLNLPVR 276
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme
synthetase, catalytic (central) domain {Escherichia
coli [TaxId: 562]}
Length = 207
Score = 28.8 bits (63), Expect = 0.20
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 6 GNLRILDEITSVNKEADRLVREDKV-DIVIA 35
G++ +L I S N+ + E K D IA
Sbjct: 16 GSVAVLPVIDSTNQYLLDRIGELKSGDACIA 46
>d1y6va1 c.76.1.1 (A:1-449) Alkaline phosphatase {Escherichia coli
[TaxId: 562]}
Length = 449
Score = 26.6 bits (58), Expect = 1.3
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 38 HAGVDLDQTVAKASKHVS-------IVVGGHSHTFLYSGKP 71
VDLD+ V +A + IV H+H
Sbjct: 340 GETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPD 380
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 25.8 bits (55), Expect = 2.2
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 80 GPYPIVVTSSVD-NRQVLVVQAAAYS-RYLGLIHLQYNDKGNIVSWRGD 126
G PIVV + ++ L+ +S R + + + N IV G
Sbjct: 45 GLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIVFSNGK 93
>d1nc7a_ b.123.1.1 (A:) Hypothetical protein TM1070 {Thermotoga
maritima [TaxId: 2336]}
Length = 116
Score = 24.7 bits (54), Expect = 3.4
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 25/60 (41%)
Query: 64 TFLYSGKPPCPHDK-----------------PKG-PYPIVVTSSVDNRQVLVVQAAAYSR 105
TFL+ P H+ PK PY I+ S+V +V+Q SR
Sbjct: 44 TFLFEDSKPVVHEVEISPMKSLHLRLDKLGIPKCKPYSIMAESNVP----VVMQ---LSR 96
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
catalytic domain {Pseudomonas sp. [TaxId: 306]}
Length = 289
Score = 25.0 bits (53), Expect = 4.8
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 20 EADRLVREDKVDIVIALSHAGVD 42
+ +D I AL A VD
Sbjct: 22 IRHQYTLDDVRAIARALDKAKVD 44
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit,
N-terminal domain {Propionibacterium freudenreichii
shermanii [TaxId: 1752]}
Length = 303
Score = 24.5 bits (52), Expect = 5.6
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 18 NKEADRLVREDKVDIVIALSHAGVD 42
+ A R+ ED V + AG
Sbjct: 24 SLMATRMAMEDMVGACADIDAAGYW 48
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 24.6 bits (52), Expect = 5.7
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 80 GPYPIVVTSSVD-NRQVLVVQAAAYS 104
G P+VV D R+ LV QA A+S
Sbjct: 44 GSRPVVVLCGTDAIREALVDQAEAFS 69
>d1vdma1 c.61.1.1 (A:1-153) Pprobable purine
phosphoribosyltransferase PH0095 {Pyrococcus horikoshii
[TaxId: 53953]}
Length = 153
Score = 24.0 bits (51), Expect = 6.8
Identities = 11/94 (11%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 12 DEITSVNKEADRLVREDKVDIVIALSHAGVDLDQTVAKASKHVSIVVGGHSHTFLYSGKP 71
++ +RE K D++I ++ G+ ++ + + V +
Sbjct: 9 WQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERG 68
Query: 72 PCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSR 105
P I + + +++V++V + +
Sbjct: 69 EKPV------ITIPIHGDLKDKRVVIVDDVSDTG 96
>d1rcqa1 b.49.2.2 (A:1-7,A:234-357) Alanine racemase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 131
Score = 23.7 bits (51), Expect = 7.2
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 47 VAKASKHVSIVVGGHSHTFLYSGKPPCPHDKPKGPYPIVVTSSVD 91
+ + + +V G++ + P +V S+D
Sbjct: 32 STERRQRIGVVAMGYADGYPRHAADGTLVFIDGKPGRLVGRVSMD 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 541,264
Number of extensions: 23214
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 17
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.2 bits)