Query psy11242
Match_columns 69
No_of_seqs 107 out of 1683
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 21:46:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0157|consensus 99.6 2.5E-14 5.5E-19 84.4 7.2 60 1-66 437-496 (497)
2 KOG0158|consensus 99.5 2E-14 4.3E-19 84.8 6.0 62 1-66 437-499 (499)
3 PLN02169 fatty acid (omega-1)- 99.5 5.6E-14 1.2E-18 82.9 6.9 59 1-65 441-499 (500)
4 PLN03195 fatty acid omega-hydr 99.5 2.3E-13 4.9E-18 80.3 7.2 59 1-65 457-515 (516)
5 PLN02426 cytochrome P450, fami 99.5 4.2E-13 9.1E-18 79.3 7.2 63 1-67 439-501 (502)
6 PLN02936 epsilon-ring hydroxyl 99.5 5.3E-13 1.1E-17 78.5 7.6 62 1-68 423-484 (489)
7 PLN02738 carotene beta-ring hy 99.5 3.4E-13 7.4E-18 81.6 6.7 62 1-67 535-596 (633)
8 PLN02290 cytokinin trans-hydro 99.5 3.3E-13 7.2E-18 79.6 6.4 61 1-67 456-516 (516)
9 PLN00168 Cytochrome P450; Prov 99.4 3.3E-13 7.1E-18 79.8 6.2 63 1-67 456-518 (519)
10 PLN00110 flavonoid 3',5'-hydro 99.4 5.6E-13 1.2E-17 78.7 5.2 64 1-68 436-499 (504)
11 PLN02655 ent-kaurene oxidase 99.4 1.5E-12 3.2E-17 76.3 6.6 62 1-67 404-465 (466)
12 PLN02302 ent-kaurenoic acid ox 99.4 2.1E-12 4.6E-17 75.6 6.0 60 1-67 430-489 (490)
13 PLN03234 cytochrome P450 83B1; 99.3 2.5E-12 5.5E-17 75.6 5.5 64 1-65 435-498 (499)
14 PLN02774 brassinosteroid-6-oxi 99.3 2.3E-12 5E-17 75.4 5.2 56 1-64 407-462 (463)
15 PTZ00404 cytochrome P450; Prov 99.3 3.4E-12 7.5E-17 74.8 5.8 60 1-65 423-482 (482)
16 KOG0159|consensus 99.3 4.4E-12 9.6E-17 74.9 6.0 60 1-66 459-518 (519)
17 PLN02394 trans-cinnamate 4-mon 99.3 4.6E-12 9.9E-17 74.6 6.1 63 1-66 439-502 (503)
18 PLN02987 Cytochrome P450, fami 99.3 5.1E-12 1.1E-16 74.3 6.1 59 1-67 412-470 (472)
19 PLN03141 3-epi-6-deoxocathaste 99.3 4.8E-12 1E-16 73.8 5.7 57 1-66 394-450 (452)
20 PLN03112 cytochrome P450 famil 99.3 5.3E-12 1.2E-16 74.6 5.4 63 1-66 444-508 (514)
21 PLN02196 abscisic acid 8'-hydr 99.3 7.8E-12 1.7E-16 73.2 6.0 57 1-64 405-461 (463)
22 PF00067 p450: Cytochrome P450 99.3 3.7E-12 8.1E-17 72.8 4.4 35 1-35 406-440 (463)
23 PLN02687 flavonoid 3'-monooxyg 99.3 1.1E-11 2.5E-16 73.3 5.7 62 1-65 445-508 (517)
24 PLN03018 homomethionine N-hydr 99.3 1.5E-11 3.2E-16 73.3 6.2 61 1-65 463-523 (534)
25 PLN02500 cytochrome P450 90B1 99.3 1.8E-11 3.9E-16 72.0 5.7 56 1-64 433-488 (490)
26 PLN02971 tryptophan N-hydroxyl 99.2 1.7E-11 3.6E-16 73.1 5.2 62 1-66 473-534 (543)
27 PLN02966 cytochrome P450 83A1 99.2 7.1E-11 1.5E-15 69.8 6.3 35 1-35 436-470 (502)
28 PLN02183 ferulate 5-hydroxylas 99.2 4.4E-11 9.4E-16 70.9 5.0 35 1-35 448-482 (516)
29 KOG0684|consensus 99.1 8.7E-11 1.9E-15 68.7 4.3 61 1-66 425-485 (486)
30 KOG0156|consensus 99.1 3.5E-10 7.7E-15 67.1 4.9 35 1-35 429-463 (489)
31 PLN02648 allene oxide synthase 98.9 1.8E-09 3.9E-14 64.0 4.9 35 1-35 427-462 (480)
32 COG2124 CypX Cytochrome P450 [ 98.8 8.6E-09 1.9E-13 60.1 4.4 34 1-34 353-386 (411)
33 PF09201 SRX: SRX; InterPro: 84.9 1.1 2.3E-05 23.3 2.0 22 6-27 19-40 (148)
34 PF12444 Sox_N: Sox developmen 67.1 6 0.00013 18.8 1.7 20 15-34 60-79 (84)
35 PF15442 DUF4629: Domain of un 61.2 5.9 0.00013 20.9 1.2 17 4-20 128-145 (150)
36 PF02663 FmdE: FmdE, Molybdenu 55.8 16 0.00035 18.4 2.3 21 5-25 5-25 (131)
37 COG0445 GidA Flavin-dependent 53.0 6.5 0.00014 25.3 0.7 9 1-9 268-276 (621)
38 PHA03162 hypothetical protein; 42.8 25 0.00053 18.3 1.7 23 1-23 2-24 (135)
39 TIGR00136 gidA glucose-inhibit 42.2 13 0.00027 24.2 0.7 9 1-9 266-274 (617)
40 PRK05192 tRNA uridine 5-carbox 37.5 16 0.00036 23.7 0.7 9 1-9 268-276 (618)
41 KOG4037|consensus 35.4 59 0.0013 18.0 2.5 23 10-32 159-181 (240)
42 PRK00801 hypothetical protein; 28.0 63 0.0014 17.9 1.9 30 4-33 56-90 (201)
43 KOG3506|consensus 25.7 34 0.00074 14.9 0.5 8 1-8 15-22 (56)
44 COG2191 Formylmethanofuran deh 24.8 1.1E+02 0.0023 17.3 2.4 21 4-24 23-43 (206)
45 COG0794 GutQ Predicted sugar p 24.7 39 0.00086 18.8 0.8 20 1-20 46-65 (202)
46 PF14960 ATP_synth_reg: ATP sy 22.2 86 0.0019 13.4 1.8 15 3-17 24-38 (49)
47 KOG4163|consensus 21.8 47 0.001 21.1 0.8 13 3-15 283-295 (551)
No 1
>KOG0157|consensus
Probab=99.55 E-value=2.5e-14 Score=84.38 Aligned_cols=60 Identities=38% Similarity=0.643 Sum_probs=52.8
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEee
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERR 66 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (69)
|+|+|+|+|++||++|++++++.++++|+|++..+ .. ..+....++.++.++++.+.+|.
T Consensus 437 saGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~-----~~-~~~~~~~~l~~~~gl~v~~~~r~ 496 (497)
T KOG0157|consen 437 SAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGG-----DK-PKPVPELTLRPKNGLKVKLRPRG 496 (497)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHheEEEecCC-----CC-ceeeeEEEEEecCCeEEEEEeCC
Confidence 67999999999999999999999999999998775 22 55667889999999999999875
No 2
>KOG0158|consensus
Probab=99.54 E-value=2e-14 Score=84.76 Aligned_cols=62 Identities=27% Similarity=0.440 Sum_probs=50.0
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeE-eeeeEEecCCCeeEEEEEee
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAI-RLNFTLDLDEPCHIRLRERR 66 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 66 (69)
|.|||+|||++||++|+++.++.||++|+++..+.. ...... ....++.|++++++++++|.
T Consensus 437 G~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t----~~~~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 437 GVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTT----IIPLEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcc----cCcccCCccceeeecCCceEEEEEeCC
Confidence 789999999999999999999999999999887641 111111 22678899999999999874
No 3
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.52 E-value=5.6e-14 Score=82.85 Aligned_cols=59 Identities=24% Similarity=0.527 Sum_probs=49.1
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEe
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRER 65 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (69)
|+|+|.|+|++||.+|++++++.++++|++++.++ .........++.+++++++++.++
T Consensus 441 G~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~------~~~~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 441 NSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEG------HKIEAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCC------CCcccccceEEecCCCEEEEEEeC
Confidence 78999999999999999999999999999988654 122334456778888999999876
No 4
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.48 E-value=2.3e-13 Score=80.34 Aligned_cols=59 Identities=27% Similarity=0.402 Sum_probs=47.4
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEe
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRER 65 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (69)
|.|+|.|+|++||++|++++++.++++|++++.++ .+.......+..|+.++++.+.+|
T Consensus 457 G~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~r 515 (516)
T PLN03195 457 QAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPG------HPVKYRMMTILSMANGLKVTVSRR 515 (516)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCC------CcceeeeeeEEecCCCEEEEEEeC
Confidence 78999999999999999999999999999987643 122223334567878899998876
No 5
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.46 E-value=4.2e-13 Score=79.31 Aligned_cols=63 Identities=32% Similarity=0.502 Sum_probs=50.1
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEeec
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERRR 67 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (69)
|.|+|.|+|++||.+|++++++.++++|++++..+ ...........++.+++++++++++|..
T Consensus 439 g~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~----~~~~~~~~~~~~~~~~~gl~v~~~~r~~ 501 (502)
T PLN02426 439 QAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGR----SNRAPRFAPGLTATVRGGLPVRVRERVR 501 (502)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecC----CCCCCcccceeEEecCCCEEEEEEEccC
Confidence 68999999999999999999999999999988543 0111233345778888899999988753
No 6
>PLN02936 epsilon-ring hydroxylase
Probab=99.46 E-value=5.3e-13 Score=78.52 Aligned_cols=62 Identities=21% Similarity=0.397 Sum_probs=50.5
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEeecC
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERRRK 68 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (69)
|.|+|.|+|++||.++++++++.|+++|++++.++ .........+..++.++.+.+++|...
T Consensus 423 g~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~R~~~ 484 (489)
T PLN02936 423 SGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPD------QDIVMTTGATIHTTNGLYMTVSRRRVP 484 (489)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCC------CccceecceEEeeCCCeEEEEEeeeCC
Confidence 68999999999999999999999999999988754 122223345666778999999998765
No 7
>PLN02738 carotene beta-ring hydroxylase
Probab=99.45 E-value=3.4e-13 Score=81.56 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=49.6
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEeec
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERRR 67 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (69)
|.|+|.|+|++||+.|++++++.|+++|+|++..+ ..+.......++.+++++++.+++|.+
T Consensus 535 G~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~-----~~~~~~~~~~~~~p~~~l~v~l~~R~~ 596 (633)
T PLN02738 535 GGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPG-----APPVKMTTGATIHTTEGLKMTVTRRTK 596 (633)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCC-----CCCcccccceEEeeCCCcEEEEEECCC
Confidence 68999999999999999999999999999988765 122222334566777899999988754
No 8
>PLN02290 cytokinin trans-hydroxylase
Probab=99.45 E-value=3.3e-13 Score=79.63 Aligned_cols=61 Identities=23% Similarity=0.481 Sum_probs=49.7
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEeec
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERRR 67 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (69)
|.|+|.|+|++||.+|++++++.++++|++++.++. ........+..|++++++.++++++
T Consensus 456 G~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~------~~~~~~~~~~~p~~~~~~~~~~~~~ 516 (516)
T PLN02290 456 AAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNY------RHAPVVVLTIKPKYGVQVCLKPLNP 516 (516)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCc------ccCccceeeecCCCCCeEEEEeCCC
Confidence 789999999999999999999999999999876541 1122234678888899999988753
No 9
>PLN00168 Cytochrome P450; Provisional
Probab=99.45 E-value=3.3e-13 Score=79.81 Aligned_cols=63 Identities=35% Similarity=0.492 Sum_probs=48.1
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEeec
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERRR 67 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (69)
|.|+|.|+|++||.+|++++++.++++|+|++.++. ..+.......+..+++++++.+.+|..
T Consensus 456 G~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~R~~ 518 (519)
T PLN00168 456 GVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGD----EVDFAEKREFTTVMAKPLRARLVPRRT 518 (519)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCC----cCChhhhceeEEeecCCcEEEEEeccC
Confidence 789999999999999999999999999999886541 112221223455666789999888753
No 10
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.41 E-value=5.6e-13 Score=78.71 Aligned_cols=64 Identities=14% Similarity=0.272 Sum_probs=49.5
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEeecC
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERRRK 68 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (69)
|.|+|.|+|++||..|++++++.++++|++++.++ ...........++.++.++.+.+.+|.++
T Consensus 436 G~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 499 (504)
T PLN00110 436 GAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDG----VELNMDEAFGLALQKAVPLSAMVTPRLHQ 499 (504)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCC----CccCcccccccccccCCCceEeeccCCCc
Confidence 78999999999999999999999999999988654 11111122345666778899999887543
No 11
>PLN02655 ent-kaurene oxidase
Probab=99.40 E-value=1.5e-12 Score=76.25 Aligned_cols=62 Identities=27% Similarity=0.314 Sum_probs=49.4
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEeec
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERRR 67 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (69)
|.|+|.|+|++||..+++++++.++++|+|++.++. .......+++..++.++.+.+.+|.+
T Consensus 404 g~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 404 GAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGD-----EEKEDTVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCC-----ccccchhheeEeecCCcEEEEeecCC
Confidence 789999999999999999999999999999886541 11222345667787899999987754
No 12
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.37 E-value=2.1e-12 Score=75.63 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=47.9
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEeec
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERRR 67 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (69)
|.|+|.|+|++||..|++++++.++++|++++.++ ..... ......|.+++++++.++..
T Consensus 430 G~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~-----~~~~~--~~~~~~p~~~~~~~~~~~~~ 489 (490)
T PLN02302 430 GLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNP-----GCKVM--YLPHPRPKDNCLARITKVAS 489 (490)
T ss_pred CCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCC-----CCcce--eCCCCCCCCCceEEEEeccC
Confidence 78999999999999999999999999999988754 11222 22236777899999988764
No 13
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.35 E-value=2.5e-12 Score=75.64 Aligned_cols=64 Identities=9% Similarity=0.173 Sum_probs=46.4
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEe
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRER 65 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (69)
|.|+|.|+|+++|.+|++++++.++++|++++.++... .........+....++..+.+..+++
T Consensus 435 G~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 435 GSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKP-EDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCC-CCCCcccccccccccCCCeEEEeecC
Confidence 78999999999999999999999999999988764110 11122233456666766666666554
No 14
>PLN02774 brassinosteroid-6-oxidase
Probab=99.34 E-value=2.3e-12 Score=75.38 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=44.3
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEE
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRE 64 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (69)
|+|+|.|+|++||.+|++++++.|+++|+|++.++ . .... ...+.|++++++++++
T Consensus 407 G~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~-----~-~~~~--~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 407 GGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGG-----D-KLMK--FPRVEAPNGLHIRVSP 462 (463)
T ss_pred CCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCC-----C-cccc--CCCCCCCCCceEEeee
Confidence 78999999999999999999999999999988765 1 1111 1233477889998874
No 15
>PTZ00404 cytochrome P450; Provisional
Probab=99.34 E-value=3.4e-12 Score=74.83 Aligned_cols=60 Identities=23% Similarity=0.515 Sum_probs=44.5
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEe
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRER 65 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (69)
|.|+|.|+|++||.+|++++++.++++|+++..++ .+.........++.| .++++.+++|
T Consensus 423 g~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~----~~~~~~~~~~~~~~~-~~~~v~~~~R 482 (482)
T PTZ00404 423 SIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDG----KKIDETEEYGLTLKP-NKFKVLLEKR 482 (482)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCC----CCCCcccccceeecC-CCceeeeecC
Confidence 78999999999999999999999999999987543 111122223445554 5788887764
No 16
>KOG0159|consensus
Probab=99.34 E-value=4.4e-12 Score=74.85 Aligned_cols=60 Identities=23% Similarity=0.466 Sum_probs=51.9
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEee
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERR 66 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (69)
|.|+|+|+|+++|.+|+.+.+++++++|+++...+ .++.......+.|..++.+++.+++
T Consensus 459 GfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~------~pv~~~~~~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 459 GFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHE------EPVEYVYRFILVPNRPLRFKFRPRN 518 (519)
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHhcceeecCC------CCccceeEEEEcCCCCcceeeeeCC
Confidence 78999999999999999999999999999987663 4566666788889888999988775
No 17
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.34 E-value=4.6e-12 Score=74.63 Aligned_cols=63 Identities=22% Similarity=0.409 Sum_probs=47.1
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEee-eeEEecCCCeeEEEEEee
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRL-NFTLDLDEPCHIRLRERR 66 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 66 (69)
|.|+|.|+|++||.+|++++++.++++|++.+.++.. ..+..... ......+.++.+++.+|.
T Consensus 439 g~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 439 GVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQS---KIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCC---cCccccccCceeeccCCCceEEeecCC
Confidence 7899999999999999999999999999998765411 11222223 245545568888888874
No 18
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.33 E-value=5.1e-12 Score=74.31 Aligned_cols=59 Identities=25% Similarity=0.345 Sum_probs=48.8
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEeec
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERRR 67 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (69)
|.|+|.|+|++||..|++++++.++++|++++.++ ....+ ..++.|.+++++++++|+-
T Consensus 412 G~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~------~~~~~--~~~~~p~~~~~~~~~~r~~ 470 (472)
T PLN02987 412 GGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQ------DKLVF--FPTTRTQKRYPINVKRRDV 470 (472)
T ss_pred CCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCC------Cceee--cccccCCCCceEEEEeccc
Confidence 78999999999999999999999999999988764 22322 3477787889999988753
No 19
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.32 E-value=4.8e-12 Score=73.83 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEee
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERR 66 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (69)
|.|+|.|+|++||.+|++++++.|+++|+|+..++ . .. ...++.|+.++.+.+++|+
T Consensus 394 G~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~-----~-~~---~~~~~~~~~~~~~~~~~~~ 450 (452)
T PLN03141 394 GGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEED-----T-IV---NFPTVRMKRKLPIWVTRID 450 (452)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCC-----C-ee---ecccccCCCCceEEEEeCC
Confidence 78999999999999999999999999999987654 1 11 1246678789999999885
No 20
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.31 E-value=5.3e-12 Score=74.55 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeE--eeeeEEecCCCeeEEEEEee
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAI--RLNFTLDLDEPCHIRLRERR 66 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 66 (69)
|.|+|.|+|++||.+|++++++.++++|++++.++. ...++.. .......+++++++.+.+|.
T Consensus 444 g~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 508 (514)
T PLN03112 444 SAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGL---RPEDIDTQEVYGMTMPKAKPLRAVATPRL 508 (514)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCC---CcccCCCccccCcccccCCCeEEEeecCC
Confidence 789999999999999999999999999999876431 0112222 22345455678999998874
No 21
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.31 E-value=7.8e-12 Score=73.22 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=45.6
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEE
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRE 64 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (69)
|.|+|.|+|+++|.++++++++.|+++|++++.++ .... ....+..|+.++++.++.
T Consensus 405 G~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~-----~~~~--~~~~~~~p~~~~~~~~~~ 461 (463)
T PLN02196 405 GNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGT-----SNGI--QYGPFALPQNGLPIALSR 461 (463)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCC-----CCce--EEcccccCCCCceEEEec
Confidence 78999999999999999999999999999988754 2222 233345688888888764
No 22
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.30 E-value=3.7e-12 Score=72.80 Aligned_cols=35 Identities=37% Similarity=0.708 Sum_probs=31.8
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeeccc
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEA 35 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~ 35 (69)
|.|+|.|+|++||..+++++++.++++|++++.++
T Consensus 406 g~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~ 440 (463)
T PF00067_consen 406 GAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPG 440 (463)
T ss_dssp ESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTT
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHhCEEEECCC
Confidence 67999999999999999999999999999999654
No 23
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.28 E-value=1.1e-11 Score=73.35 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=44.3
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceee--EeeeeEEecCCCeeEEEEEe
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEA--IRLNFTLDLDEPCHIRLRER 65 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 65 (69)
|.|+|.|+|++||.+|++++++.++++|++++.++. ....+. ........+..++.+..++|
T Consensus 445 G~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~R 508 (517)
T PLN02687 445 GAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQ---TPDKLNMEEAYGLTLQRAVPLMVHPRPR 508 (517)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCC---CcccCCcccccceeeecCCCeEEeeccC
Confidence 789999999999999999999999999999886541 011222 12234444445677776665
No 24
>PLN03018 homomethionine N-hydroxylase
Probab=99.28 E-value=1.5e-11 Score=73.34 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=45.4
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEe
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRER 65 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (69)
|.|+|.|+|++||.+|++++++.++++|++++.++.. ..........+.. +.++++.+++|
T Consensus 463 G~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~~-p~~~~v~~~~R 523 (534)
T PLN03018 463 STGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFG---PLSLEEDDASLLM-AKPLLLSVEPR 523 (534)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCC---CCCccccccceec-CCCeEEEEEec
Confidence 7899999999999999999999999999998765410 1112112233333 46899999888
No 25
>PLN02500 cytochrome P450 90B1
Probab=99.26 E-value=1.8e-11 Score=72.04 Aligned_cols=56 Identities=32% Similarity=0.401 Sum_probs=42.6
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEE
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRE 64 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (69)
|.|+|.|+|++||.+|++++++.++++|+|++.++ .... ... .+.+.+++++++.+
T Consensus 433 G~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~-----~~~~-~~~--~~~~~~~l~~~~~~ 488 (490)
T PLN02500 433 GGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEA-----DQAF-AFP--FVDFPKGLPIRVRR 488 (490)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCC-----Ccce-ecc--cccCCCCceEEEEe
Confidence 78999999999999999999999999999988664 1111 111 22334688888765
No 26
>PLN02971 tryptophan N-hydroxylase
Probab=99.25 E-value=1.7e-11 Score=73.09 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=44.5
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEee
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERR 66 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (69)
|.|+|.|+|++||..|++++++.|+++|+|++.++.. ..+.....+ ++..+.++.+.+++|.
T Consensus 473 G~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 534 (543)
T PLN02971 473 STGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSET---RVELMESSH-DMFLSKPLVMVGELRL 534 (543)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCC---CcchhhhcC-cccccccceeeeeecC
Confidence 7899999999999999999999999999998765410 122222223 3323357777777773
No 27
>PLN02966 cytochrome P450 83A1
Probab=99.20 E-value=7.1e-11 Score=69.77 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=32.8
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeeccc
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEA 35 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~ 35 (69)
|.|+|.|+|++||.+|++++++.++++|++++.++
T Consensus 436 g~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~ 470 (502)
T PLN02966 436 GSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNG 470 (502)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCC
Confidence 68999999999999999999999999999987664
No 28
>PLN02183 ferulate 5-hydroxylase
Probab=99.19 E-value=4.4e-11 Score=70.89 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=32.7
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeeccc
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEA 35 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~ 35 (69)
|.|+|.|+|++||.+|++++++.++++|++++.++
T Consensus 448 G~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~ 482 (516)
T PLN02183 448 GSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDG 482 (516)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCC
Confidence 78999999999999999999999999999987654
No 29
>KOG0684|consensus
Probab=99.13 E-value=8.7e-11 Score=68.71 Aligned_cols=61 Identities=21% Similarity=0.436 Sum_probs=49.1
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecccccccccceeeEeeeeEEecCCCeeEEEEEee
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERR 66 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (69)
|+|.+.|||+.||++|++.++..+++.|++++.++ +...++.. ..++.|.+++.++.+.|.
T Consensus 425 GaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~----~~P~~d~s-~~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 425 GAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDG----PFPEVDYS-RMVMQPEGDVRIRYKRRP 485 (486)
T ss_pred CCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCC----CCCCCCHH-HhhcCCCCCceEEEeecC
Confidence 78999999999999999999999999999999884 12223222 237788888988887764
No 30
>KOG0156|consensus
Probab=99.06 E-value=3.5e-10 Score=67.12 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=33.2
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeeccc
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEA 35 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~~ 35 (69)
|+|+|.|+|..+|+.++.++++.++++|+|++..+
T Consensus 429 G~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~ 463 (489)
T KOG0156|consen 429 GSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG 463 (489)
T ss_pred CCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC
Confidence 78999999999999999999999999999988764
No 31
>PLN02648 allene oxide synthase
Probab=98.95 E-value=1.8e-09 Score=64.01 Aligned_cols=35 Identities=14% Similarity=0.441 Sum_probs=32.5
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhce-eeeccc
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFE-ILPVEA 35 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~-~~~~~~ 35 (69)
|+|+|.|+|++||..|++++++.|+++|+ |++.++
T Consensus 427 G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~ 462 (480)
T PLN02648 427 TVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVD 462 (480)
T ss_pred CCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCC
Confidence 57889999999999999999999999998 988766
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.81 E-value=8.6e-09 Score=60.07 Aligned_cols=34 Identities=32% Similarity=0.647 Sum_probs=31.3
Q ss_pred CCCCccccchHHHHHHHHHHHHHHhHhceeeecc
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 34 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ll~~f~~~~~~ 34 (69)
|+|+|.|+|..||++|++++++.++++|++....
T Consensus 353 G~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~ 386 (411)
T COG2124 353 GGGPHRCLGAALARLELKVALAELLRRFPLLLLA 386 (411)
T ss_pred CCCCccccCHHHHHHHHHHHHHHHHHhCchhhcC
Confidence 7899999999999999999999999999986544
No 33
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=84.89 E-value=1.1 Score=23.32 Aligned_cols=22 Identities=27% Similarity=0.699 Sum_probs=16.5
Q ss_pred cccchHHHHHHHHHHHHHHhHh
Q psy11242 6 NCIGGKYALLQMKVFTVSIVRE 27 (69)
Q Consensus 6 ~C~G~~~a~~~~~~~~~~ll~~ 27 (69)
+|.|+.|+..++..+++.++..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999875
No 34
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=67.05 E-value=6 Score=18.80 Aligned_cols=20 Identities=5% Similarity=0.180 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHhceeeecc
Q psy11242 15 LQMKVFTVSIVREFEILPVE 34 (69)
Q Consensus 15 ~~~~~~~~~ll~~f~~~~~~ 34 (69)
..|+-++.++|+-|+|.+.+
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 46778899999999998865
No 35
>PF15442 DUF4629: Domain of unknown function (DUF4629)
Probab=61.17 E-value=5.9 Score=20.88 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=11.4
Q ss_pred CccccchHH-HHHHHHHH
Q psy11242 4 PRNCIGGKY-ALLQMKVF 20 (69)
Q Consensus 4 ~r~C~G~~~-a~~~~~~~ 20 (69)
||.|+|+++ -.++++..
T Consensus 128 PRs~LgMHMLeSVQVFH~ 145 (150)
T PF15442_consen 128 PRSCLGMHMLESVQVFHP 145 (150)
T ss_pred cccccchHHHHhHHhhhh
Confidence 799999883 44554443
No 36
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=55.84 E-value=16 Score=18.39 Aligned_cols=21 Identities=14% Similarity=0.021 Sum_probs=15.3
Q ss_pred ccccchHHHHHHHHHHHHHHh
Q psy11242 5 RNCIGGKYALLQMKVFTVSIV 25 (69)
Q Consensus 5 r~C~G~~~a~~~~~~~~~~ll 25 (69)
|.|+|..+++.....++..|-
T Consensus 5 H~Cpgl~~G~r~~~~a~~~l~ 25 (131)
T PF02663_consen 5 HLCPGLALGYRMAKYALEELG 25 (131)
T ss_dssp S--HHHHHHHHHHHHHHHHHT
T ss_pred CcCccHHHHHHHHHHHHHHcC
Confidence 889999999888887777653
No 37
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=53.00 E-value=6.5 Score=25.27 Aligned_cols=9 Identities=44% Similarity=0.863 Sum_probs=7.6
Q ss_pred CCCCccccc
Q psy11242 1 MTGPRNCIG 9 (69)
Q Consensus 1 g~G~r~C~G 9 (69)
|.|||.||-
T Consensus 268 g~GPRYCPS 276 (621)
T COG0445 268 GVGPRYCPS 276 (621)
T ss_pred ccCCCCCCC
Confidence 579999986
No 38
>PHA03162 hypothetical protein; Provisional
Probab=42.77 E-value=25 Score=18.25 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=15.9
Q ss_pred CCCCccccchHHHHHHHHHHHHH
Q psy11242 1 MTGPRNCIGGKYALLQMKVFTVS 23 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~~~~ 23 (69)
++|.+.||++....-++..=++.
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~k 24 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAK 24 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHH
Confidence 46889999888776665555544
No 39
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=42.17 E-value=13 Score=24.16 Aligned_cols=9 Identities=44% Similarity=0.881 Sum_probs=7.5
Q ss_pred CCCCccccc
Q psy11242 1 MTGPRNCIG 9 (69)
Q Consensus 1 g~G~r~C~G 9 (69)
|.|||.|+-
T Consensus 266 ~~GpRYCps 274 (617)
T TIGR00136 266 GNGPRYCPS 274 (617)
T ss_pred CCCCCCCCC
Confidence 569999986
No 40
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=37.46 E-value=16 Score=23.68 Aligned_cols=9 Identities=44% Similarity=0.863 Sum_probs=7.4
Q ss_pred CCCCccccc
Q psy11242 1 MTGPRNCIG 9 (69)
Q Consensus 1 g~G~r~C~G 9 (69)
|.|||.|+-
T Consensus 268 ~~gpRYCps 276 (618)
T PRK05192 268 GVGPRYCPS 276 (618)
T ss_pred CCCCCCCCC
Confidence 569999986
No 41
>KOG4037|consensus
Probab=35.43 E-value=59 Score=17.96 Aligned_cols=23 Identities=9% Similarity=0.397 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHhHhceeee
Q psy11242 10 GKYALLQMKVFTVSIVREFEILP 32 (69)
Q Consensus 10 ~~~a~~~~~~~~~~ll~~f~~~~ 32 (69)
.+|.+.|-..+--+||+.|+++.
T Consensus 159 nnFRMIERHfFrdrLLK~FDFeF 181 (240)
T KOG4037|consen 159 NNFRMIERHFFRDRLLKSFDFEF 181 (240)
T ss_pred chhhHHHHHHHHHHHHhhcccee
Confidence 46778888888889999999865
No 42
>PRK00801 hypothetical protein; Provisional
Probab=28.02 E-value=63 Score=17.92 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=17.2
Q ss_pred CccccchH-----HHHHHHHHHHHHHhHhceeeec
Q psy11242 4 PRNCIGGK-----YALLQMKVFTVSIVREFEILPV 33 (69)
Q Consensus 4 ~r~C~G~~-----~a~~~~~~~~~~ll~~f~~~~~ 33 (69)
-|.|||.- ++..-...+++.-+..-+|.+.
T Consensus 56 LRGCIGs~~p~~pL~~~v~~~A~~AA~~DpRF~Pl 90 (201)
T PRK00801 56 LRGCIGFPYPDSPLVEAIIDSAISAATRDPRFPPV 90 (201)
T ss_pred eccccCCCCCcccHHHHHHHHHHHHHcCCCCCCCC
Confidence 58999983 4444455555555554455443
No 43
>KOG3506|consensus
Probab=25.68 E-value=34 Score=14.94 Aligned_cols=8 Identities=38% Similarity=0.758 Sum_probs=5.2
Q ss_pred CCCCcccc
Q psy11242 1 MTGPRNCI 8 (69)
Q Consensus 1 g~G~r~C~ 8 (69)
|.|.|.|-
T Consensus 15 g~GsrsC~ 22 (56)
T KOG3506|consen 15 GQGSRSCR 22 (56)
T ss_pred CCCCccee
Confidence 45777773
No 44
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=24.81 E-value=1.1e+02 Score=17.27 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=15.3
Q ss_pred CccccchHHHHHHHHHHHHHH
Q psy11242 4 PRNCIGGKYALLQMKVFTVSI 24 (69)
Q Consensus 4 ~r~C~G~~~a~~~~~~~~~~l 24 (69)
.|.|+|..+++....++.-.|
T Consensus 23 GH~cPg~~lG~r~~~iA~e~L 43 (206)
T COG2191 23 GHLCPGLALGYRMALIAMEEL 43 (206)
T ss_pred CcCCCchHHHHHHHHHHHHHc
Confidence 388999998887766655443
No 45
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=24.65 E-value=39 Score=18.80 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=14.0
Q ss_pred CCCCccccchHHHHHHHHHH
Q psy11242 1 MTGPRNCIGGKYALLQMKVF 20 (69)
Q Consensus 1 g~G~r~C~G~~~a~~~~~~~ 20 (69)
|.|+-.++|+.||..-+.+-
T Consensus 46 G~GkSG~Igkk~Aa~L~s~G 65 (202)
T COG0794 46 GVGKSGLIGKKFAARLASTG 65 (202)
T ss_pred cCChhHHHHHHHHHHHHccC
Confidence 67888888888876554443
No 46
>PF14960 ATP_synth_reg: ATP synthase regulation
Probab=22.15 E-value=86 Score=13.35 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=8.7
Q ss_pred CCccccchHHHHHHH
Q psy11242 3 GPRNCIGGKYALLQM 17 (69)
Q Consensus 3 G~r~C~G~~~a~~~~ 17 (69)
|+++|.=.-+|.+-+
T Consensus 24 GR~N~~~ATya~i~l 38 (49)
T PF14960_consen 24 GRANVAKATYASIGL 38 (49)
T ss_pred chhhhHHHHHHHHHH
Confidence 777776545554443
No 47
>KOG4163|consensus
Probab=21.85 E-value=47 Score=21.07 Aligned_cols=13 Identities=8% Similarity=0.422 Sum_probs=9.8
Q ss_pred CCccccchHHHHH
Q psy11242 3 GPRNCIGGKYALL 15 (69)
Q Consensus 3 G~r~C~G~~~a~~ 15 (69)
+...|+|+||+.+
T Consensus 283 aTSH~LGQNFSkm 295 (551)
T KOG4163|consen 283 ATSHHLGQNFSKM 295 (551)
T ss_pred cchhhhhHHHHHh
Confidence 4567899998864
Done!