RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11242
(69 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 40.7 bits (96), Expect = 8e-06
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 2 TGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 34
GPRNC+G + A ++MK+F ++++ FE+
Sbjct: 405 AGPRNCLGERLARMEMKLFLATLLQNFEVELPP 437
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 39.6 bits (92), Expect = 2e-05
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 2 TGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMA 40
+GPR C+G ALLQMK+ + I++ ++ +E +K A
Sbjct: 442 SGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGHKIEA 480
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 35.1 bits (81), Expect = 8e-04
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEI 30
G R C+G + AL++MK V++VR F+I
Sbjct: 441 GLRVCLGKEMALMEMKSVAVAVVRRFDI 468
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 34.4 bits (79), Expect = 0.001
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 2 TGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYK 37
GPRNCIG +A+++ K+ ++ +F + Y+
Sbjct: 457 AGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR 492
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 31.3 bits (71), Expect = 0.018
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVR--EFEILPVE--AYKTMA 40
GPR C+G A LQMK+ + R +F+++P Y+ M
Sbjct: 459 GPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHPVKYRMMT 500
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 31.5 bits (71), Expect = 0.019
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R C G A+L ++ F ++VREFE V +V+ A + FT + +P RL
Sbjct: 458 GRRICAGLGIAMLHLEYFVANMVREFEWKEVPG----DEVDFAEKREFTTVMAKPLRARL 513
Query: 63 RERR 66
RR
Sbjct: 514 VPRR 517
>gnl|CDD|238595 cd01190, INT_SG5, INT_SG5, DNA breaking-rejoining enzymes,
integrase/recombinases subgroup 5, N- and C-terminal
domains. The CD contains mainly predicted bacterial
integrase/recombinases.
Length = 260
Score = 28.5 bits (64), Expect = 0.17
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 35 AYKTMAQVEEAIRLNF-TLDLDEPCHIRLRERRRKD 69
Y T A+V EA L L LD P +RL + RK+
Sbjct: 104 LYNTGARVSEATGLKVDDLQLDPPAQVRLIGKGRKE 139
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 27.8 bits (62), Expect = 0.37
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEIL 31
GP C+G A L++KV ++R F +L
Sbjct: 355 GPHRCLGAALARLELKVALAELLRRFPLL 383
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 27.6 bits (61), Expect = 0.42
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFE 29
GPR C+G +A + V T +VR F+
Sbjct: 537 GPRKCVGDMFASFENVVATAMLVRRFD 563
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 27.4 bits (61), Expect = 0.48
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEI 30
GPR C+G ++ALL+ V +++ ++
Sbjct: 425 GPRKCVGDQFALLEAIVALAVLLQRLDL 452
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 26.7 bits (59), Expect = 0.94
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREF 28
GPR C G + A L+M VF +V F
Sbjct: 435 GPRLCAGSELAKLEMAVFIHHLVLNF 460
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 26.2 bits (58), Expect = 1.3
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 2 TGPRNCIGGKYALLQMKVFTVSIVREFEI 30
GPRNC+G ++A ++ + +I+ F++
Sbjct: 424 IGPRNCVGQQFAQDELYLAFSNIILNFKL 452
>gnl|CDD|179812 PRK04293, PRK04293, adenylosuccinate synthetase; Provisional.
Length = 333
Score = 25.6 bits (57), Expect = 1.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 25 VREFEILPVEAYKTMAQVEEAIRLNFTL 52
V E++ LP EA K + ++EE + + TL
Sbjct: 292 VTEYDKLPPEAKKFIEEIEEELGVPVTL 319
>gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy
production and conversion].
Length = 575
Score = 25.5 bits (56), Expect = 2.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 28 FEILPVEAYKTMAQVEEAIRLNFTLDL 54
F+I P E K +A+V E + L ++ L
Sbjct: 210 FDITPREIIKGLAEVNERLGLPHSIHL 236
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 24.9 bits (54), Expect = 3.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 9 GGKYALLQMKVFTVSIVREFEILPVEAYKTMAQV 42
GGK L+ + +IV F +P+ AY T+ V
Sbjct: 805 GGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAV 838
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 24.9 bits (54), Expect = 3.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 7 CIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQV 42
GG+ LQ + +IV F LP+ AY T+ +
Sbjct: 736 YGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAI 771
>gnl|CDD|226574 COG4089, COG4089, Predicted membrane protein [Function unknown].
Length = 235
Score = 24.7 bits (54), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 14 LLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERRR 67
LL M +FT S V+ F I+ V A + A+ ++F + P +I + E ++
Sbjct: 27 LLMMFIFTGSFVQLFSIVGVSA-------DTALLISFLSLVGSPVNIPIYELKK 73
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 24.2 bits (52), Expect = 7.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYK 37
GPR C G + A + + VF +V F +P E K
Sbjct: 414 GPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDK 448
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 24.2 bits (53), Expect = 7.8
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 29 EILPVEAYKTMAQVEE 44
E LPVE Y T+ V
Sbjct: 208 EALPVEKYDTLGAVAG 223
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional.
Length = 590
Score = 24.1 bits (53), Expect = 8.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 32 PVEAYKTMAQVEEAI 46
PVEA +TMA + I
Sbjct: 327 PVEAVQTMATIAVRI 341
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.412
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,603,151
Number of extensions: 274491
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 22
Length of query: 69
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 30
Effective length of database: 9,207,796
Effective search space: 276233880
Effective search space used: 276233880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)