RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11242
(69 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 54.2 bits (131), Expect = 1e-10
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R+CIG ++A +++KV +++ E V ++ TL +P L
Sbjct: 385 GHRSCIGQQFAQMEVKVVMAKLLQRLEFRLVPGQ------RFGLQEQATLKPLDPVLCTL 438
Query: 63 RERRRK 68
R R +
Sbjct: 439 RPRGWQ 444
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 53.9 bits (130), Expect = 1e-10
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDL-----DEP 57
GPR C G A++ MK V+++R F + ++ Q E+I+ L L
Sbjct: 433 GPRGCAGKYIAMVMMKAILVTLLRRFHVKTLQ-----GQCVESIQKIHDLSLHPDETKNM 487
Query: 58 CHIRLRER 65
+ R
Sbjct: 488 LEMIFTPR 495
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 51.5 bits (124), Expect = 8e-10
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G CIG K+ LLQ+K + R ++ + + C ++
Sbjct: 391 GVHKCIGQKFGLLQVKTILATAFRSYDFQLLRDE----VPDPDYHTMVVGPTASQCRVKY 446
Query: 63 RERR 66
R+
Sbjct: 447 IRRK 450
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 49.9 bits (119), Expect = 3e-09
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVE 34
G + C G + +L ++F + I R ++ +E
Sbjct: 440 GNKQCAGKDFVVLVARLFVIEIFRRYDSFDIE 471
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 47.6 bits (114), Expect = 2e-08
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
GPRNCIG ++AL+ MK+ + +++ F P + +T ++ + L L ++P +++
Sbjct: 416 GPRNCIGMRFALMNMKLALIRVLQNFSFKPCK--ETQIPLK--LSLGGLLQPEKPVVLKV 471
Query: 63 RER 65
R
Sbjct: 472 ESR 474
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 46.9 bits (112), Expect = 3e-08
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R CIG + A LQ+ + I+++++I+ + + L I
Sbjct: 426 GKRMCIGRRLAELQLHLALCWIIQKYDIVATD------NEPVEMLHLGILVPSRELPIAF 479
Query: 63 RER 65
R R
Sbjct: 480 RPR 482
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 46.5 bits (111), Expect = 5e-08
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G C+G +A++Q+K ++RE+E + ++ + + L +P +R
Sbjct: 390 GRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQPPESYRNDHSKM----VVQLAQPAAVRY 445
Query: 63 RER 65
R R
Sbjct: 446 RRR 448
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 46.1 bits (110), Expect = 6e-08
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G CIG +A +Q+K +++R +E ++ Y + P IR
Sbjct: 397 GRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGY-----FPTVNYTTMIHTPENPV-IRY 450
Query: 63 RER 65
+ R
Sbjct: 451 KRR 453
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 45.9 bits (109), Expect = 7e-08
Identities = 11/63 (17%), Positives = 27/63 (42%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G +C+G YA+ +K F ++ ++ + A + + + + + + +R
Sbjct: 427 GHNHCLGRSYAVNSIKQFVFLVLVHLDLELINADVEIPEFDLSRYGFGLMQPEHDVPVRY 486
Query: 63 RER 65
R R
Sbjct: 487 RIR 489
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 46.1 bits (110), Expect = 7e-08
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R C+G +ALL+ + + R F + P+ + TL + R
Sbjct: 332 GQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFP--------RVLAQVTLRPEGGLPARP 383
Query: 63 RERRR 67
RE R
Sbjct: 384 REEVR 388
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 46.1 bits (110), Expect = 8e-08
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R CIG ++AL + + +++ F+ Y E I+ TL +P +
Sbjct: 396 GQRACIGQQFALHEATLVLGMMLKHFDFEDHTNY------ELDIKETLTL---KPEGFVV 446
Query: 63 RERRRK 68
+ + +K
Sbjct: 447 KAKSKK 452
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 45.8 bits (109), Expect = 1e-07
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R C+G + A L+M +F ++++ F + + + N L ++P
Sbjct: 418 GVRQCLGRRIAELEMTIFLINMLENFRV------EIQHLSDVGTTFNLILMPEKPISFTF 471
Query: 63 RERRRK 68
++
Sbjct: 472 WPFNQE 477
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 45.0 bits (107), Expect = 2e-07
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R C+G ++A L+MK+F ++++F+ + + + + + ++L
Sbjct: 387 GLRECLGKEFARLEMKLFATRLIQQFDWTLLPGQ------NLELVVTPSPRPKDNLRVKL 440
Query: 63 R 63
Sbjct: 441 H 441
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 44.6 bits (106), Expect = 2e-07
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R C +++ Q+ + T ++ ++ V +A+R+ TL + +R
Sbjct: 406 GKRKCPSDHFSMAQLTLITAALATKYRFEQVAGS------NDAVRVGITLRPHDL-LVRP 458
Query: 63 RERRRKD 69
R
Sbjct: 459 VARHHHH 465
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 44.5 bits (105), Expect = 3e-07
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVE 34
+ C G + +L ++F + + R ++ +E
Sbjct: 422 ENKQCAGKDFVVLITRLFVIELFRRYDSFEIE 453
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 43.9 bits (104), Expect = 5e-07
Identities = 10/64 (15%), Positives = 26/64 (40%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G C G +A+ ++K F + ++ FE+ +E ++++ L +
Sbjct: 423 GATICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILPPLNDIEFKY 482
Query: 63 RERR 66
+ +
Sbjct: 483 KFKH 486
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 34.2 bits (79), Expect = 0.001
Identities = 13/63 (20%), Positives = 24/63 (38%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
C G +A+ +K +I+ F++ + T+ V+ + L IR
Sbjct: 408 EDNLCPGRHFAVHAIKELVFTILTRFDVELCDKNATVPLVDPSRYGFGILQPAGDLEIRY 467
Query: 63 RER 65
R R
Sbjct: 468 RIR 470
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 32.0 bits (73), Expect = 0.006
Identities = 7/26 (26%), Positives = 8/26 (30%)
Query: 5 RNCIGGKYALLQMKVFTVSIVREFEI 30
C G L MKV +V
Sbjct: 359 HRCPGEWIVLAIMKVAAHLLVNAMRY 384
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 32.0 bits (73), Expect = 0.007
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 5 RNCIGGKYALLQMKVFTVSIVREFEI 30
C G + MK +V + E
Sbjct: 361 HRCPGEGITIEVMKASLDFLVHQIEY 386
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 26.8 bits (60), Expect = 0.51
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 2 TGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIR 61
G R C+G A L++ V +++ F +LP ++ L +P +R
Sbjct: 422 CGARVCLGESLARLELFVVLARLLQAFTLLPPPVGAL-PSLQPDPYCGVNL-KVQPFQVR 479
Query: 62 LRER 65
L+ R
Sbjct: 480 LQPR 483
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 26.7 bits (60), Expect = 0.54
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTM 39
TG R C G A +++ + +I++ F + P+ K +
Sbjct: 410 STGKRVCAGEGLARMELFLLLCAILQHFNLKPLVDPKDI 448
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 26.4 bits (59), Expect = 0.78
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 1 MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTM 39
G R C+G A +++ +F SI++ F + + K +
Sbjct: 412 SAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNL 450
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 25.6 bits (57), Expect = 1.1
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 2 TGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 34
G R+C+G A ++M +F ++++ F +
Sbjct: 417 LGRRHCLGEHLARMEMFLFFTALLQRFHLHFPH 449
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 25.6 bits (57), Expect = 1.4
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 2 TGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 34
G R CIG A ++ +F ++++ E
Sbjct: 429 MGKRRCIGEVLAKWEIFLFLAILLQQLEFSVPP 461
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 25.6 bits (57), Expect = 1.4
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 2 TGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 34
G R C+G A +++ +F S+++ F
Sbjct: 416 AGRRACLGEPLARMELFLFFTSLLQHFSFSVPT 448
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 25.2 bits (56), Expect = 1.6
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 2 TGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTM 39
G RNC G A +++ +F ++++ F + ++ K +
Sbjct: 412 IGKRNCFGEGLARMELFLFFTTVMQNFRLKSSQSPKDI 449
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 24.9 bits (55), Expect = 2.6
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 2 TGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 34
G R CIG + + +Q+ +F + + +
Sbjct: 425 VGKRRCIGEELSKMQLFLFISILAHQCDFRANP 457
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.412
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,100,027
Number of extensions: 53385
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 29
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)