RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11242
(69 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 52.0 bits (123), Expect = 2e-10
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
GPRNCIG ++AL+ MK+ + +++ F P + Q+ + L L ++P +++
Sbjct: 411 GPRNCIGMRFALMNMKLALIRVLQNFSFKPCKE----TQIPLKLSLGGLLQPEKPVVLKV 466
Query: 63 RER 65
R
Sbjct: 467 ESR 469
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 50.3 bits (118), Expect = 8e-10
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G C+G +A++Q+K ++RE+E + + + L +P +R
Sbjct: 386 GRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQP----PESYRNDHSKMVVQLAQPAAVRY 441
Query: 63 RER 65
R R
Sbjct: 442 RRR 444
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 50.2 bits (118), Expect = 1e-09
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R C+G +ALL+ + + R F + P+ + TL + R
Sbjct: 332 GQRLCLGRDFALLEGPIVLRAFFRRFRLDPLP--------FPRVLAQVTLRPEGGLPARP 383
Query: 63 RE 64
RE
Sbjct: 384 RE 385
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 46.2 bits (108), Expect = 3e-08
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R CIG ++AL + + +++ F+ Y E I+ TL E ++
Sbjct: 394 GQRACIGQQFALHEATLVLGMMLKHFDFEDHTNY------ELDIKETLTLKP-EGFVVKA 446
Query: 63 RERR 66
+ ++
Sbjct: 447 KSKK 450
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 43.6 bits (101), Expect = 2e-07
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTM 39
G R C+G A +++ +F SI++ F + + K +
Sbjct: 406 GKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNL 442
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 42.7 bits (99), Expect = 4e-07
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R C+G A ++ +F +I++ F I ++ R + ++ IR
Sbjct: 405 GKRICLGEGIARTELFLFFTTILQNFSIASPV---PPEDIDLTPRESGVGNVPPSYQIRF 461
Query: 63 RER 65
R
Sbjct: 462 LAR 464
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 42.4 bits (98), Expect = 5e-07
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRL 62
G R+C+G A ++M +F ++++ F + + RL TL +P I
Sbjct: 405 GRRHCLGEHLARMEMFLFFTALLQRFHLHFPHELV----PDLKPRLGMTLQP-QPYLICA 459
Query: 63 RER 65
R
Sbjct: 460 ERR 462
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 38.9 bits (89), Expect = 1e-05
Identities = 8/65 (12%), Positives = 15/65 (23%), Gaps = 6/65 (9%)
Query: 2 TGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIR 61
C G + MK +V + E E + + +
Sbjct: 353 EKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQSLHYSLAR------MPSLPESGFVMS 406
Query: 62 LRERR 66
R+
Sbjct: 407 GIRRK 411
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 37.9 bits (86), Expect = 2e-05
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVE 34
G C+G A L+ ++ ++F + +
Sbjct: 313 GIHLCLGAPLARLEARIALEEFAKKFRVKEIV 344
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 36.3 bits (82), Expect = 7e-05
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPV 33
G C+G A L+MK+F ++ + + + +
Sbjct: 373 GAHMCLGQHLAKLEMKIFFEELLPKLKSVEL 403
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 36.3 bits (82), Expect = 8e-05
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPV 33
G C+G A L+ +V ++ F L +
Sbjct: 345 GIHFCMGRPLAKLEGEVALRALFGRFPALSL 375
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 35.9 bits (81), Expect = 1e-04
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEIL 31
G C+G A +++ + S+ F L
Sbjct: 344 GVHFCLGAPLARMEVTLALESLFGRFPDL 372
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 35.9 bits (81), Expect = 1e-04
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEIL 31
GP C G + ++ V ++ F L
Sbjct: 344 GPHVCPGAALSRMEAGVALPALYARFPHL 372
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 35.6 bits (80), Expect = 1e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPVE 34
GP C G A L+ ++ +I R F + ++
Sbjct: 346 GPHVCPGVSLARLEAEIAVGTIFRRFPEMKLK 377
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 34.8 bits (78), Expect = 2e-04
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEILPV 33
G C+G A L+ ++ + F + +
Sbjct: 313 GIHLCLGAPLARLEARIAIEEFSKRFRHIEI 343
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 34.8 bits (78), Expect = 3e-04
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFE 29
GP C GG A L+ ++ +++
Sbjct: 342 GPHYCPGGMLARLESELLVDAVLDRVP 368
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 34.8 bits (78), Expect = 3e-04
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFE 29
G CI A ++ ++ ++F
Sbjct: 344 GDHRCIAEHLAKAELTTVFSTLYQKFP 370
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 34.4 bits (77), Expect = 4e-04
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFE 29
G C G ++ +++++
Sbjct: 340 GQHFCPGSALGRRHAQIGIEALLKKMP 366
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 34.4 bits (77), Expect = 4e-04
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFEIL 31
G +C+G A L+++ + R F L
Sbjct: 339 GVHHCLGAALARLELRTVFTELWRRFPAL 367
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 34.3 bits (77), Expect = 4e-04
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFE 29
G C+G A +++ ++ R F
Sbjct: 349 GIHYCVGAALARSMLRMAYQTLWRRFP 375
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 33.5 bits (75), Expect = 8e-04
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 3 GPRNCIGGKYALLQMKVFTVSIVREFE 29
G C+G A ++ V +
Sbjct: 343 GSHLCLGQHLARREIIVTLKEWLTRIP 369
>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein
{Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}
Length = 359
Score = 23.4 bits (50), Expect = 2.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 23 SIVREFEILPVEAYKTMAQVEEAIRLN 49
SI R E+ PVE A +E R +
Sbjct: 228 SISRWTELFPVEQLNKPASIEGGFRSD 254
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 23.3 bits (49), Expect = 3.3
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 16 QMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 53
+ F +++ +I P + + Q E + F L+
Sbjct: 19 SVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.141 0.412
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 265,584
Number of extensions: 9962
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 23
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)