Query psy11243
Match_columns 91
No_of_seqs 110 out of 1728
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 21:47:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0157|consensus 99.9 1.5E-22 3.3E-27 130.8 8.4 82 1-88 413-496 (497)
2 KOG0158|consensus 99.9 1.3E-22 2.8E-27 130.3 7.6 85 1-88 414-499 (499)
3 KOG0159|consensus 99.9 2.7E-22 5.8E-27 128.0 7.1 82 1-88 436-518 (519)
4 PLN03195 fatty acid omega-hydr 99.9 7.9E-22 1.7E-26 127.7 9.0 82 1-88 433-516 (516)
5 PLN02169 fatty acid (omega-1)- 99.9 5.9E-22 1.3E-26 128.1 8.2 81 1-87 416-499 (500)
6 PLN02426 cytochrome P450, fami 99.8 6.1E-21 1.3E-25 123.5 8.4 85 1-89 415-501 (502)
7 PLN02738 carotene beta-ring hy 99.8 6.4E-21 1.4E-25 126.1 8.5 84 1-89 509-596 (633)
8 PLN02936 epsilon-ring hydroxyl 99.8 1.9E-20 4E-25 120.8 8.9 84 1-90 397-484 (489)
9 PLN02290 cytokinin trans-hydro 99.8 1.8E-20 3.9E-25 121.4 8.0 81 1-88 435-515 (516)
10 PLN00168 Cytochrome P450; Prov 99.8 1.8E-20 3.9E-25 121.6 7.6 85 1-89 427-518 (519)
11 PLN03234 cytochrome P450 83B1; 99.8 1.3E-20 2.7E-25 121.7 6.7 86 1-87 409-498 (499)
12 PLN02655 ent-kaurene oxidase 99.8 2.7E-20 5.8E-25 119.5 7.8 84 1-89 381-465 (466)
13 PLN02394 trans-cinnamate 4-mon 99.8 3.3E-20 7.2E-25 119.8 7.7 85 1-88 413-502 (503)
14 PLN00110 flavonoid 3',5'-hydro 99.8 2.4E-20 5.2E-25 120.8 6.9 85 1-89 409-498 (504)
15 PF00067 p450: Cytochrome P450 99.8 1.2E-20 2.5E-25 118.8 4.7 57 1-57 382-440 (463)
16 PLN03141 3-epi-6-deoxocathaste 99.8 4E-20 8.8E-25 118.2 6.9 77 1-88 374-450 (452)
17 PTZ00404 cytochrome P450; Prov 99.8 5.2E-20 1.1E-24 118.4 7.0 79 1-87 404-482 (482)
18 PLN02774 brassinosteroid-6-oxi 99.8 5.2E-20 1.1E-24 118.1 6.2 77 1-86 386-462 (463)
19 PLN02183 ferulate 5-hydroxylas 99.8 6.7E-20 1.4E-24 118.9 6.5 86 1-87 423-511 (516)
20 PLN02302 ent-kaurenoic acid ox 99.8 9.3E-20 2E-24 117.2 7.0 80 1-89 410-489 (490)
21 PLN02687 flavonoid 3'-monooxyg 99.8 1.6E-19 3.4E-24 117.2 7.0 87 1-88 417-509 (517)
22 PLN02987 Cytochrome P450, fami 99.8 2.9E-19 6.3E-24 115.0 8.1 80 1-88 389-469 (472)
23 PLN02500 cytochrome P450 90B1 99.8 1.9E-19 4.1E-24 116.1 6.9 78 1-86 403-488 (490)
24 PLN02971 tryptophan N-hydroxyl 99.8 1.4E-19 3E-24 118.1 6.1 84 1-88 447-534 (543)
25 PLN02196 abscisic acid 8'-hydr 99.8 2.4E-19 5.2E-24 115.1 6.6 76 1-86 386-461 (463)
26 PLN03018 homomethionine N-hydr 99.8 4.9E-19 1.1E-23 115.4 7.5 84 1-88 434-524 (534)
27 PLN03112 cytochrome P450 famil 99.8 7.2E-19 1.6E-23 113.9 7.0 86 1-89 416-509 (514)
28 PLN02966 cytochrome P450 83A1 99.8 7.2E-19 1.6E-23 113.7 6.9 57 1-57 412-470 (502)
29 KOG0684|consensus 99.8 5.3E-19 1.2E-23 111.5 4.7 83 1-88 397-485 (486)
30 KOG0156|consensus 99.8 1.5E-18 3.2E-23 112.0 6.3 81 1-87 406-487 (489)
31 COG2124 CypX Cytochrome P450 [ 99.5 8.1E-15 1.8E-19 93.3 4.8 49 1-57 339-387 (411)
32 PLN02648 allene oxide synthase 99.5 9.3E-14 2E-18 90.0 4.7 56 1-57 397-462 (480)
33 cd04518 TBP_archaea archaeal T 89.3 0.37 8E-06 28.0 2.1 32 1-32 30-63 (174)
34 COG2101 SPT15 TATA-box binding 88.3 0.43 9.3E-06 27.8 1.9 33 1-33 36-70 (185)
35 PLN00062 TATA-box-binding prot 86.7 0.52 1.1E-05 27.5 1.7 32 1-32 30-63 (179)
36 PRK00394 transcription factor; 86.6 0.71 1.5E-05 26.9 2.2 32 1-32 29-62 (179)
37 cd00652 TBP_TLF TATA box bindi 85.6 0.82 1.8E-05 26.5 2.1 32 1-32 30-63 (174)
38 cd04516 TBP_eukaryotes eukaryo 84.0 0.82 1.8E-05 26.6 1.6 32 1-32 30-63 (174)
39 PF00352 TBP: Transcription fa 81.6 0.7 1.5E-05 23.5 0.7 32 1-32 32-65 (86)
40 cd04517 TLF TBP-like factors ( 77.7 1.8 3.8E-05 25.2 1.6 33 1-33 122-156 (174)
41 PF09201 SRX: SRX; InterPro: 75.4 3 6.4E-05 23.5 2.0 23 27-49 18-40 (148)
42 TIGR02115 potass_kdpF K+-trans 74.9 0.63 1.4E-05 18.4 -0.5 7 2-8 19-25 (26)
43 KOG3506|consensus 74.8 1.5 3.1E-05 20.5 0.6 11 20-30 12-22 (56)
44 KOG3302|consensus 74.4 3.5 7.5E-05 24.5 2.2 32 1-32 51-84 (200)
45 PF12444 Sox_N: Sox developmen 65.1 6.3 0.00014 20.2 1.7 20 37-56 60-79 (84)
46 PF02663 FmdE: FmdE, Molybdenu 58.2 12 0.00027 20.4 2.3 22 27-48 5-26 (131)
47 PF07886 BA14K: BA14K-like pro 51.0 15 0.00033 15.0 1.4 17 14-30 15-31 (31)
48 PF14459 Prok-E2_C: Prokaryoti 46.7 5.4 0.00012 21.5 -0.3 17 16-32 104-120 (131)
49 PHA03162 hypothetical protein; 42.9 20 0.00044 20.0 1.5 24 23-46 2-25 (135)
50 KOG2376|consensus 37.7 11 0.00025 26.4 0.1 8 3-10 582-589 (652)
51 PTZ00218 40S ribosomal protein 35.7 18 0.0004 16.9 0.6 10 21-30 11-20 (54)
52 PF04798 Baculo_19: Baculoviru 35.4 11 0.00024 21.4 -0.2 19 16-35 57-75 (146)
53 PF05953 Allatostatin: Allatos 28.2 29 0.00062 10.7 0.4 6 20-25 6-11 (11)
54 PF11720 Inhibitor_I78: Peptid 27.8 29 0.00063 16.3 0.6 7 1-7 38-44 (60)
55 PF13765 PRY: SPRY-associated 27.0 27 0.00059 15.5 0.4 8 3-10 33-40 (49)
56 PF14319 Zn_Tnp_IS91: Transpos 25.7 1.2E+02 0.0026 16.3 2.9 29 17-45 51-81 (111)
57 COG2191 Formylmethanofuran deh 25.4 94 0.002 18.9 2.4 22 26-47 23-44 (206)
58 COG4050 Uncharacterized protei 23.3 42 0.00092 18.5 0.7 11 20-33 94-104 (152)
59 PF13947 GUB_WAK_bind: Wall-as 22.9 41 0.0009 17.4 0.7 12 18-30 13-24 (106)
60 COG5598 Trimethylamine:corrino 20.4 1.5E+02 0.0034 20.7 3.0 40 14-53 132-174 (526)
No 1
>KOG0157|consensus
Probab=99.88 E-value=1.5e-22 Score=130.78 Aligned_cols=82 Identities=34% Similarity=0.614 Sum_probs=71.5
Q ss_pred CccCCCCccccc--CcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCC
Q psy11243 1 MYLPRGYRELKS--ELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78 (91)
Q Consensus 1 ~f~PeR~~~~~~--~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (91)
+|+||||+++.. ..++++|+|||+|+|.|+|+.||++|++++++.++++|++.+..+ .. .......++.+++
T Consensus 413 ~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~-----~~-~~~~~~~~l~~~~ 486 (497)
T KOG0157|consen 413 EFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGG-----DK-PKPVPELTLRPKN 486 (497)
T ss_pred hcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCC-----CC-ceeeeEEEEEecC
Confidence 599999995433 356799999999999999999999999999999999999998776 22 5567789999999
Q ss_pred CeeEEEEEcc
Q psy11243 79 PCHIRLRERR 88 (91)
Q Consensus 79 ~~~v~~~~r~ 88 (91)
+++|++.+|.
T Consensus 487 gl~v~~~~r~ 496 (497)
T KOG0157|consen 487 GLKVKLRPRG 496 (497)
T ss_pred CeEEEEEeCC
Confidence 9999999885
No 2
>KOG0158|consensus
Probab=99.88 E-value=1.3e-22 Score=130.30 Aligned_cols=85 Identities=28% Similarity=0.497 Sum_probs=69.7
Q ss_pred CccCCCCccccc-CcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCCC
Q psy11243 1 MYLPRGYRELKS-ELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEP 79 (91)
Q Consensus 1 ~f~PeR~~~~~~-~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (91)
+|+||||.+.+. ...+.+|+|||.|+|+|+|++||++|+++.++.|+++|+++.... .. ...........+.|+++
T Consensus 414 ~F~PERF~~~~~~~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~-t~--~~~~~~~~~~~l~pk~g 490 (499)
T KOG0158|consen 414 KFKPERFEEENNKSRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPT-TI--IPLEGDPKGFTLSPKGG 490 (499)
T ss_pred cCCCccCCCCcccccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCc-cc--CcccCCccceeeecCCc
Confidence 699999986653 568899999999999999999999999999999999999998774 10 11111123788999999
Q ss_pred eeEEEEEcc
Q psy11243 80 CHIRLRERR 88 (91)
Q Consensus 80 ~~v~~~~r~ 88 (91)
+++++++|.
T Consensus 491 i~Lkl~~r~ 499 (499)
T KOG0158|consen 491 IWLKLEPRD 499 (499)
T ss_pred eEEEEEeCC
Confidence 999999874
No 3
>KOG0159|consensus
Probab=99.87 E-value=2.7e-22 Score=127.98 Aligned_cols=82 Identities=24% Similarity=0.491 Sum_probs=74.3
Q ss_pred CccCCCCcccc-cCcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCCC
Q psy11243 1 MYLPRGYRELK-SELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEP 79 (91)
Q Consensus 1 ~f~PeR~~~~~-~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (91)
+|+||||++.. ...+++.++|||.|+|+|+|+++|.+|+.+.+++++++|+++...+ .+......+.+.|..+
T Consensus 436 ~F~PeRWL~~~~~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~------~pv~~~~~~il~P~~~ 509 (519)
T KOG0159|consen 436 EFLPERWLKPSTKTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHE------EPVEYVYRFILVPNRP 509 (519)
T ss_pred ccChhhhcccccCCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCC------CCccceeEEEEcCCCC
Confidence 69999999877 7789999999999999999999999999999999999999998775 4566778899999999
Q ss_pred eeEEEEEcc
Q psy11243 80 CHIRLRERR 88 (91)
Q Consensus 80 ~~v~~~~r~ 88 (91)
+.+++..|.
T Consensus 510 l~f~f~~r~ 518 (519)
T KOG0159|consen 510 LRFKFRPRN 518 (519)
T ss_pred cceeeeeCC
Confidence 999998874
No 4
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.87 E-value=7.9e-22 Score=127.70 Aligned_cols=82 Identities=24% Similarity=0.364 Sum_probs=65.5
Q ss_pred CccCCCCccccc--CcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCC
Q psy11243 1 MYLPRGYRELKS--ELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78 (91)
Q Consensus 1 ~f~PeR~~~~~~--~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (91)
+|+||||++++. ...+..++|||+|+|+|+|+++|++|++++++.++++|++++..+ .+........+.|++
T Consensus 433 ~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~------~~~~~~~~~~~~~~~ 506 (516)
T PLN03195 433 SFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPG------HPVKYRMMTILSMAN 506 (516)
T ss_pred hcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCC------CcceeeeeeEEecCC
Confidence 599999986432 245568999999999999999999999999999999999998654 122233345667888
Q ss_pred CeeEEEEEcc
Q psy11243 79 PCHIRLRERR 88 (91)
Q Consensus 79 ~~~v~~~~r~ 88 (91)
++.|++++|+
T Consensus 507 ~~~v~~~~r~ 516 (516)
T PLN03195 507 GLKVTVSRRS 516 (516)
T ss_pred CEEEEEEeCC
Confidence 9999998874
No 5
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.87 E-value=5.9e-22 Score=128.10 Aligned_cols=81 Identities=21% Similarity=0.436 Sum_probs=66.2
Q ss_pred CccCCCCcccccC---cCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecC
Q psy11243 1 MYLPRGYRELKSE---LYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLD 77 (91)
Q Consensus 1 ~f~PeR~~~~~~~---~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (91)
+|+||||++++.. ..+++|+|||+|+|+|+|+++|++|++++++.++++|+++...+ .........++.|+
T Consensus 416 ~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~------~~~~~~~~~~l~~~ 489 (500)
T PLN02169 416 DFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEG------HKIEAIPSILLRMK 489 (500)
T ss_pred hcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCC------CCcccccceEEecC
Confidence 5999999865332 23678999999999999999999999999999999999988654 12233445778899
Q ss_pred CCeeEEEEEc
Q psy11243 78 EPCHIRLRER 87 (91)
Q Consensus 78 ~~~~v~~~~r 87 (91)
+++++++++|
T Consensus 490 ~gl~l~l~~~ 499 (500)
T PLN02169 490 HGLKVTVTKK 499 (500)
T ss_pred CCEEEEEEeC
Confidence 9999999876
No 6
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.85 E-value=6.1e-21 Score=123.48 Aligned_cols=85 Identities=27% Similarity=0.406 Sum_probs=67.5
Q ss_pred CccCCCCccccc--CcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCC
Q psy11243 1 MYLPRGYRELKS--ELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78 (91)
Q Consensus 1 ~f~PeR~~~~~~--~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (91)
+|+||||+++.. ...+..++|||.|+|.|+|+++|.+|++++++.++++|+++...+. ..........++.|++
T Consensus 415 ~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~----~~~~~~~~~~~~~~~~ 490 (502)
T PLN02426 415 EFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRS----NRAPRFAPGLTATVRG 490 (502)
T ss_pred hcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCC----CCCCcccceeEEecCC
Confidence 699999987432 2345689999999999999999999999999999999999986430 1112333457788999
Q ss_pred CeeEEEEEccc
Q psy11243 79 PCHIRLRERRR 89 (91)
Q Consensus 79 ~~~v~~~~r~~ 89 (91)
++.|++++|.+
T Consensus 491 gl~v~~~~r~~ 501 (502)
T PLN02426 491 GLPVRVRERVR 501 (502)
T ss_pred CEEEEEEEccC
Confidence 99999998864
No 7
>PLN02738 carotene beta-ring hydroxylase
Probab=99.85 E-value=6.4e-21 Score=126.06 Aligned_cols=84 Identities=21% Similarity=0.362 Sum_probs=66.9
Q ss_pred CccCCCCccccc----CcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEec
Q psy11243 1 MYLPRGYRELKS----ELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDL 76 (91)
Q Consensus 1 ~f~PeR~~~~~~----~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (91)
+|+||||+.+.. ...+..++|||.|+|+|+|+++|.+|++++++.|+++|++++..+ ..+........+.+
T Consensus 509 ~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~-----~~~~~~~~~~~~~p 583 (633)
T PLN02738 509 KFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPG-----APPVKMTTGATIHT 583 (633)
T ss_pred ccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCC-----CCCcccccceEEee
Confidence 699999984321 234568999999999999999999999999999999999998765 12233334567778
Q ss_pred CCCeeEEEEEccc
Q psy11243 77 DEPCHIRLRERRR 89 (91)
Q Consensus 77 ~~~~~v~~~~r~~ 89 (91)
++++++.+++|..
T Consensus 584 ~~~l~v~l~~R~~ 596 (633)
T PLN02738 584 TEGLKMTVTRRTK 596 (633)
T ss_pred CCCcEEEEEECCC
Confidence 8899999998864
No 8
>PLN02936 epsilon-ring hydroxylase
Probab=99.84 E-value=1.9e-20 Score=120.84 Aligned_cols=84 Identities=19% Similarity=0.377 Sum_probs=66.8
Q ss_pred CccCCCCccccc----CcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEec
Q psy11243 1 MYLPRGYRELKS----ELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDL 76 (91)
Q Consensus 1 ~f~PeR~~~~~~----~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (91)
+|+||||+.... ...+..++|||.|+|.|+|+++|.++++++++.++++|++++..+ ........+...|
T Consensus 397 ~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~------~~~~~~~~~~~~~ 470 (489)
T PLN02936 397 EFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPD------QDIVMTTGATIHT 470 (489)
T ss_pred ccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCC------CccceecceEEee
Confidence 699999985432 123468999999999999999999999999999999999998765 1122233466678
Q ss_pred CCCeeEEEEEcccC
Q psy11243 77 DEPCHIRLRERRRK 90 (91)
Q Consensus 77 ~~~~~v~~~~r~~~ 90 (91)
++++.|++++|...
T Consensus 471 ~~~~~v~~~~R~~~ 484 (489)
T PLN02936 471 TNGLYMTVSRRRVP 484 (489)
T ss_pred CCCeEEEEEeeeCC
Confidence 88999999998765
No 9
>PLN02290 cytokinin trans-hydroxylase
Probab=99.83 E-value=1.8e-20 Score=121.38 Aligned_cols=81 Identities=21% Similarity=0.413 Sum_probs=65.5
Q ss_pred CccCCCCcccccCcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCCCe
Q psy11243 1 MYLPRGYRELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPC 80 (91)
Q Consensus 1 ~f~PeR~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (91)
+|+||||++... ..+..++|||.|+|.|+|+++|++|++++++.++++|++++.++ .. ........+.|++++
T Consensus 435 ~F~PeRfl~~~~-~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~-----~~-~~~~~~~~~~p~~~~ 507 (516)
T PLN02290 435 EFNPDRFAGRPF-APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDN-----YR-HAPVVVLTIKPKYGV 507 (516)
T ss_pred hcCccccCCCCC-CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCC-----cc-cCccceeeecCCCCC
Confidence 699999995422 23457999999999999999999999999999999999988665 11 112235778899999
Q ss_pred eEEEEEcc
Q psy11243 81 HIRLRERR 88 (91)
Q Consensus 81 ~v~~~~r~ 88 (91)
.+++++|+
T Consensus 508 ~~~~~~~~ 515 (516)
T PLN02290 508 QVCLKPLN 515 (516)
T ss_pred eEEEEeCC
Confidence 99999875
No 10
>PLN00168 Cytochrome P450; Provisional
Probab=99.83 E-value=1.8e-20 Score=121.57 Aligned_cols=85 Identities=29% Similarity=0.441 Sum_probs=64.5
Q ss_pred CccCCCCccccc-------CcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEE
Q psy11243 1 MYLPRGYRELKS-------ELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFT 73 (91)
Q Consensus 1 ~f~PeR~~~~~~-------~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 73 (91)
+|+||||++... ...+..++|||.|+|+|+|+++|.+|++++++.++++|++++..+. .........+.
T Consensus 427 ~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~----~~~~~~~~~~~ 502 (519)
T PLN00168 427 EFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGD----EVDFAEKREFT 502 (519)
T ss_pred ccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCC----cCChhhhceeE
Confidence 699999986321 1234689999999999999999999999999999999999986541 11221223355
Q ss_pred EecCCCeeEEEEEccc
Q psy11243 74 LDLDEPCHIRLRERRR 89 (91)
Q Consensus 74 ~~~~~~~~v~~~~r~~ 89 (91)
..+.+++++.+++|+.
T Consensus 503 ~~~~~~~~~~~~~R~~ 518 (519)
T PLN00168 503 TVMAKPLRARLVPRRT 518 (519)
T ss_pred EeecCCcEEEEEeccC
Confidence 6667789999988863
No 11
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.83 E-value=1.3e-20 Score=121.67 Aligned_cols=86 Identities=10% Similarity=0.196 Sum_probs=64.2
Q ss_pred CccCCCCcccccC----cCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEec
Q psy11243 1 MYLPRGYRELKSE----LYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDL 76 (91)
Q Consensus 1 ~f~PeR~~~~~~~----~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (91)
+|+||||+++... ..+..++|||.|+|+|+|+++|.+|++++++.++++|++++..+. ...........+....+
T Consensus 409 ~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~-~~~~~~~~~~~~~~~~~ 487 (499)
T PLN03234 409 EFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGI-KPEDIKMDVMTGLAMHK 487 (499)
T ss_pred hcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCC-CCCCCCccccccccccc
Confidence 6999999864322 346789999999999999999999999999999999999987641 11111223345666677
Q ss_pred CCCeeEEEEEc
Q psy11243 77 DEPCHIRLRER 87 (91)
Q Consensus 77 ~~~~~v~~~~r 87 (91)
++.+.+.+++|
T Consensus 488 ~~~~~~~~~~~ 498 (499)
T PLN03234 488 KEHLVLAPTKH 498 (499)
T ss_pred CCCeEEEeecC
Confidence 77777776654
No 12
>PLN02655 ent-kaurene oxidase
Probab=99.83 E-value=2.7e-20 Score=119.48 Aligned_cols=84 Identities=25% Similarity=0.272 Sum_probs=67.1
Q ss_pred CccCCCCcccccC-cCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCCC
Q psy11243 1 MYLPRGYRELKSE-LYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEP 79 (91)
Q Consensus 1 ~f~PeR~~~~~~~-~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (91)
+|+||||++.... .....++|||.|+|.|+|+++|..+++++++.|+.+|++++..+ .........+++.++++
T Consensus 381 ~F~PeR~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~-----~~~~~~~~~~~~~~~~~ 455 (466)
T PLN02655 381 EWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREG-----DEEKEDTVQLTTQKLHP 455 (466)
T ss_pred ccCccccCCCCcccCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCC-----CccccchhheeEeecCC
Confidence 6999999865432 34578999999999999999999999999999999999998655 11122234566778889
Q ss_pred eeEEEEEccc
Q psy11243 80 CHIRLRERRR 89 (91)
Q Consensus 80 ~~v~~~~r~~ 89 (91)
+.+.+.+|..
T Consensus 456 ~~~~~~~r~~ 465 (466)
T PLN02655 456 LHAHLKPRGS 465 (466)
T ss_pred cEEEEeecCC
Confidence 9999988753
No 13
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.82 E-value=3.3e-20 Score=119.83 Aligned_cols=85 Identities=24% Similarity=0.421 Sum_probs=64.0
Q ss_pred CccCCCCccccc----CcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEe-eeEEEe
Q psy11243 1 MYLPRGYRELKS----ELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIR-LNFTLD 75 (91)
Q Consensus 1 ~f~PeR~~~~~~----~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~ 75 (91)
+|+||||++... .....+++|||.|+|+|+|+++|.+|++++++.++++|++.+.++. +..+.... ..+.+.
T Consensus 413 ~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~ 489 (503)
T PLN02394 413 EFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQ---SKIDVSEKGGQFSLH 489 (503)
T ss_pred ccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCC---CcCccccccCceeec
Confidence 699999986432 1235689999999999999999999999999999999999876551 01122222 235554
Q ss_pred cCCCeeEEEEEcc
Q psy11243 76 LDEPCHIRLRERR 88 (91)
Q Consensus 76 ~~~~~~v~~~~r~ 88 (91)
.+.++.+++.+|+
T Consensus 490 ~~~~~~~~~~~r~ 502 (503)
T PLN02394 490 IAKHSTVVFKPRS 502 (503)
T ss_pred cCCCceEEeecCC
Confidence 4458999999885
No 14
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.82 E-value=2.4e-20 Score=120.76 Aligned_cols=85 Identities=15% Similarity=0.305 Sum_probs=65.7
Q ss_pred CccCCCCcccccC-c----CCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEe
Q psy11243 1 MYLPRGYRELKSE-L----YPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 75 (91)
Q Consensus 1 ~f~PeR~~~~~~~-~----~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (91)
+|+||||++.... . .+..++|||.|+|.|+|+++|..|++++++.++++|++++..+ ............+.
T Consensus 409 ~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~----~~~~~~~~~~~~~~ 484 (504)
T PLN00110 409 EFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDG----VELNMDEAFGLALQ 484 (504)
T ss_pred cCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCC----CccCcccccccccc
Confidence 6999999854321 1 2357999999999999999999999999999999999998655 11122223456667
Q ss_pred cCCCeeEEEEEccc
Q psy11243 76 LDEPCHIRLRERRR 89 (91)
Q Consensus 76 ~~~~~~v~~~~r~~ 89 (91)
|+.++.+.+++|..
T Consensus 485 ~~~~~~~~~~~r~~ 498 (504)
T PLN00110 485 KAVPLSAMVTPRLH 498 (504)
T ss_pred cCCCceEeeccCCC
Confidence 88899999988853
No 15
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.82 E-value=1.2e-20 Score=118.83 Aligned_cols=57 Identities=32% Similarity=0.619 Sum_probs=49.0
Q ss_pred CccCCCCccccc--CcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeeccc
Q psy11243 1 MYLPRGYRELKS--ELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEA 57 (91)
Q Consensus 1 ~f~PeR~~~~~~--~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~ 57 (91)
+|+||||++... ......++|||.|+|.|+|+++|+.+++++++.++++|++++.++
T Consensus 382 ~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~ 440 (463)
T PF00067_consen 382 EFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPG 440 (463)
T ss_dssp S--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTT
T ss_pred ccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCC
Confidence 699999997765 367788999999999999999999999999999999999999654
No 16
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.82 E-value=4e-20 Score=118.24 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=64.2
Q ss_pred CccCCCCcccccCcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCCCe
Q psy11243 1 MYLPRGYRELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPC 80 (91)
Q Consensus 1 ~f~PeR~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (91)
+|+||||++.. ..+..++|||+|+|.|+|+++|.+|++++++.|+++|++....+ . . ....++.|++++
T Consensus 374 ~F~PeRfl~~~--~~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~-----~-~---~~~~~~~~~~~~ 442 (452)
T PLN03141 374 QFNPWRWQEKD--MNNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEED-----T-I---VNFPTVRMKRKL 442 (452)
T ss_pred ccCcccccCCC--CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCC-----C-e---eecccccCCCCc
Confidence 59999999753 24678999999999999999999999999999999999987654 1 1 112477888899
Q ss_pred eEEEEEcc
Q psy11243 81 HIRLRERR 88 (91)
Q Consensus 81 ~v~~~~r~ 88 (91)
.|.+++|+
T Consensus 443 ~~~~~~~~ 450 (452)
T PLN03141 443 PIWVTRID 450 (452)
T ss_pred eEEEEeCC
Confidence 99999885
No 17
>PTZ00404 cytochrome P450; Provisional
Probab=99.81 E-value=5.2e-20 Score=118.43 Aligned_cols=79 Identities=23% Similarity=0.522 Sum_probs=60.8
Q ss_pred CccCCCCcccccCcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCCCe
Q psy11243 1 MYLPRGYRELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPC 80 (91)
Q Consensus 1 ~f~PeR~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (91)
+|+||||++.. .+..++|||.|+|.|+|+++|++|++++++.++++|+++...+. +..........+.|. ++
T Consensus 404 ~F~PeRwl~~~---~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~----~~~~~~~~~~~~~~~-~~ 475 (482)
T PTZ00404 404 QFDPSRFLNPD---SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGK----KIDETEEYGLTLKPN-KF 475 (482)
T ss_pred ccCccccCCCC---CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCC----CCCcccccceeecCC-Cc
Confidence 69999998642 45689999999999999999999999999999999999876540 111122234555554 78
Q ss_pred eEEEEEc
Q psy11243 81 HIRLRER 87 (91)
Q Consensus 81 ~v~~~~r 87 (91)
.+.+++|
T Consensus 476 ~v~~~~R 482 (482)
T PTZ00404 476 KVLLEKR 482 (482)
T ss_pred eeeeecC
Confidence 8888765
No 18
>PLN02774 brassinosteroid-6-oxidase
Probab=99.81 E-value=5.2e-20 Score=118.09 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=59.6
Q ss_pred CccCCCCcccccCcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCCCe
Q psy11243 1 MYLPRGYRELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPC 80 (91)
Q Consensus 1 ~f~PeR~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (91)
+|+||||++.+.. ....++|||+|+|.|+|+++|.+|++++++.|+++|++++.++ .. . .....+.|++++
T Consensus 386 ~F~PeRfl~~~~~-~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~-----~~-~--~~~~~~~p~~g~ 456 (463)
T PLN02774 386 TFNPWRWLDKSLE-SHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGG-----DK-L--MKFPRVEAPNGL 456 (463)
T ss_pred ccCchhcCCCCcC-CCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCC-----Cc-c--ccCCCCCCCCCc
Confidence 6999999865422 2236999999999999999999999999999999999998765 11 1 111234477889
Q ss_pred eEEEEE
Q psy11243 81 HIRLRE 86 (91)
Q Consensus 81 ~v~~~~ 86 (91)
+|++++
T Consensus 457 ~~~~~~ 462 (463)
T PLN02774 457 HIRVSP 462 (463)
T ss_pred eEEeee
Confidence 988864
No 19
>PLN02183 ferulate 5-hydroxylase
Probab=99.81 E-value=6.7e-20 Score=118.87 Aligned_cols=86 Identities=15% Similarity=0.185 Sum_probs=59.9
Q ss_pred CccCCCCcccccC---cCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecC
Q psy11243 1 MYLPRGYRELKSE---LYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLD 77 (91)
Q Consensus 1 ~f~PeR~~~~~~~---~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (91)
+|+||||++++.. ..+..++|||+|+|+|+|+++|.+|++++++.++++|++++..+.. ..........+....+.
T Consensus 423 ~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~ 501 (516)
T PLN02183 423 TFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMK-PSELDMNDVFGLTAPRA 501 (516)
T ss_pred ccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCC-CCCCChhhccccccccC
Confidence 6999999864432 2456899999999999999999999999999999999998766411 00011111223333333
Q ss_pred CCeeEEEEEc
Q psy11243 78 EPCHIRLRER 87 (91)
Q Consensus 78 ~~~~v~~~~r 87 (91)
.++.+.+++|
T Consensus 502 ~~~~~~~~~r 511 (516)
T PLN02183 502 TRLVAVPTYR 511 (516)
T ss_pred CCcEEEeecC
Confidence 4666777666
No 20
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.81 E-value=9.3e-20 Score=117.23 Aligned_cols=80 Identities=18% Similarity=0.333 Sum_probs=64.4
Q ss_pred CccCCCCcccccCcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCCCe
Q psy11243 1 MYLPRGYRELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPC 80 (91)
Q Consensus 1 ~f~PeR~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (91)
+|+||||++.. ..+..++|||.|+|.|+|+++|..|++++++.++++|++++.++ ... ......+.|.+++
T Consensus 410 ~F~PeR~~~~~--~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~-----~~~--~~~~~~~~p~~~~ 480 (490)
T PLN02302 410 EFDPSRWDNYT--PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNP-----GCK--VMYLPHPRPKDNC 480 (490)
T ss_pred ccChhhcCCCC--CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCC-----CCc--ceeCCCCCCCCCc
Confidence 69999998643 35568999999999999999999999999999999999998754 111 2222337788899
Q ss_pred eEEEEEccc
Q psy11243 81 HIRLRERRR 89 (91)
Q Consensus 81 ~v~~~~r~~ 89 (91)
.+++++|..
T Consensus 481 ~~~~~~~~~ 489 (490)
T PLN02302 481 LARITKVAS 489 (490)
T ss_pred eEEEEeccC
Confidence 999988753
No 21
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.80 E-value=1.6e-19 Score=117.17 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=62.5
Q ss_pred CccCCCCcccccC------cCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEE
Q psy11243 1 MYLPRGYRELKSE------LYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTL 74 (91)
Q Consensus 1 ~f~PeR~~~~~~~------~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 74 (91)
+|+||||++.... ..+..++|||.|+|.|+|+++|.+|++++++.++++|++++..+.. .............+
T Consensus 417 ~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~ 495 (517)
T PLN02687 417 EFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQT-PDKLNMEEAYGLTL 495 (517)
T ss_pred cCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCC-cccCCcccccceee
Confidence 6999999864321 2356899999999999999999999999999999999998865410 00011111223444
Q ss_pred ecCCCeeEEEEEcc
Q psy11243 75 DLDEPCHIRLRERR 88 (91)
Q Consensus 75 ~~~~~~~v~~~~r~ 88 (91)
.+..++++++++|.
T Consensus 496 ~~~~~~~~~~~~R~ 509 (517)
T PLN02687 496 QRAVPLMVHPRPRL 509 (517)
T ss_pred ecCCCeEEeeccCC
Confidence 55557888887774
No 22
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.80 E-value=2.9e-19 Score=115.04 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=65.3
Q ss_pred CccCCCCcccccC-cCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCCC
Q psy11243 1 MYLPRGYRELKSE-LYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEP 79 (91)
Q Consensus 1 ~f~PeR~~~~~~~-~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (91)
+|+||||++.... ..+..++|||+|+|.|+|+++|..|++++++.++.+|++++..+ .+. ....++.|.++
T Consensus 389 ~F~PeRfl~~~~~~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~------~~~--~~~~~~~p~~~ 460 (472)
T PLN02987 389 TFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQ------DKL--VFFPTTRTQKR 460 (472)
T ss_pred ccCcccCCCCCCCCCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCC------Cce--eecccccCCCC
Confidence 6999999864332 33468999999999999999999999999999999999998665 122 22347788889
Q ss_pred eeEEEEEcc
Q psy11243 80 CHIRLRERR 88 (91)
Q Consensus 80 ~~v~~~~r~ 88 (91)
+.+++++|+
T Consensus 461 ~~~~~~~r~ 469 (472)
T PLN02987 461 YPINVKRRD 469 (472)
T ss_pred ceEEEEecc
Confidence 999999885
No 23
>PLN02500 cytochrome P450 90B1
Probab=99.80 E-value=1.9e-19 Score=116.10 Aligned_cols=78 Identities=29% Similarity=0.512 Sum_probs=59.0
Q ss_pred CccCCCCcccccC--------cCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeE
Q psy11243 1 MYLPRGYRELKSE--------LYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNF 72 (91)
Q Consensus 1 ~f~PeR~~~~~~~--------~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 72 (91)
+|+||||+++... ..+..++|||+|+|.|+|+++|.+|++++++.++++|++++.++ .... ....
T Consensus 403 ~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~-----~~~~--~~~~ 475 (490)
T PLN02500 403 LFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEA-----DQAF--AFPF 475 (490)
T ss_pred ccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCC-----Ccce--eccc
Confidence 6999999864321 24578999999999999999999999999999999999988665 1111 1122
Q ss_pred EEecCCCeeEEEEE
Q psy11243 73 TLDLDEPCHIRLRE 86 (91)
Q Consensus 73 ~~~~~~~~~v~~~~ 86 (91)
..+.+++.|++.+
T Consensus 476 -~~~~~~l~~~~~~ 488 (490)
T PLN02500 476 -VDFPKGLPIRVRR 488 (490)
T ss_pred -ccCCCCceEEEEe
Confidence 2334588888764
No 24
>PLN02971 tryptophan N-hydroxylase
Probab=99.79 E-value=1.4e-19 Score=118.07 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=62.0
Q ss_pred CccCCCCcccccC----cCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEec
Q psy11243 1 MYLPRGYRELKSE----LYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDL 76 (91)
Q Consensus 1 ~f~PeR~~~~~~~----~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (91)
+|+||||++.... ..+..++|||+|+|.|+|+++|..|++++++.|+++|++++..+.. ........+ .+..
T Consensus 447 ~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~-~~~~ 522 (543)
T PLN02971 447 SFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSET---RVELMESSH-DMFL 522 (543)
T ss_pred ccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCC---CcchhhhcC-cccc
Confidence 6999999864321 3456899999999999999999999999999999999999876410 112212223 4434
Q ss_pred CCCeeEEEEEcc
Q psy11243 77 DEPCHIRLRERR 88 (91)
Q Consensus 77 ~~~~~v~~~~r~ 88 (91)
++++.+.+++|.
T Consensus 523 ~~~~~~~~~~~~ 534 (543)
T PLN02971 523 SKPLVMVGELRL 534 (543)
T ss_pred cccceeeeeecC
Confidence 447888888873
No 25
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.79 E-value=2.4e-19 Score=115.06 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=61.5
Q ss_pred CccCCCCcccccCcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCCCe
Q psy11243 1 MYLPRGYRELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPC 80 (91)
Q Consensus 1 ~f~PeR~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (91)
+|+||||++. ..+.+++|||.|+|.|+|+++|+.+++++++.|+++|++++.+. ..+ .....+..|++++
T Consensus 386 ~F~PeRfl~~---~~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~-----~~~--~~~~~~~~p~~~~ 455 (463)
T PLN02196 386 KFDPSRFEVA---PKPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGT-----SNG--IQYGPFALPQNGL 455 (463)
T ss_pred ccChhhhcCC---CCCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCC-----CCc--eEEcccccCCCCc
Confidence 6999999863 24578999999999999999999999999999999999998665 222 2333345688888
Q ss_pred eEEEEE
Q psy11243 81 HIRLRE 86 (91)
Q Consensus 81 ~v~~~~ 86 (91)
.|+++.
T Consensus 456 ~~~~~~ 461 (463)
T PLN02196 456 PIALSR 461 (463)
T ss_pred eEEEec
Confidence 888864
No 26
>PLN03018 homomethionine N-hydroxylase
Probab=99.79 E-value=4.9e-19 Score=115.43 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=62.4
Q ss_pred CccCCCCcccccC-------cCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEE
Q psy11243 1 MYLPRGYRELKSE-------LYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFT 73 (91)
Q Consensus 1 ~f~PeR~~~~~~~-------~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 73 (91)
+|+||||++.... ..+..++|||.|+|.|+|+++|.++++++++.++++|++++..+.. ...........
T Consensus 434 ~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~ 510 (534)
T PLN03018 434 VYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFG---PLSLEEDDASL 510 (534)
T ss_pred ccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCC---CCCccccccce
Confidence 6999999864321 2356899999999999999999999999999999999999765410 11111122333
Q ss_pred EecCCCeeEEEEEcc
Q psy11243 74 LDLDEPCHIRLRERR 88 (91)
Q Consensus 74 ~~~~~~~~v~~~~r~ 88 (91)
..| +++.+.+++|.
T Consensus 511 ~~p-~~~~v~~~~R~ 524 (534)
T PLN03018 511 LMA-KPLLLSVEPRL 524 (534)
T ss_pred ecC-CCeEEEEEecc
Confidence 344 58999999984
No 27
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.78 E-value=7.2e-19 Score=113.95 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=63.9
Q ss_pred CccCCCCccccc---C---cCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceee--EeeeE
Q psy11243 1 MYLPRGYRELKS---E---LYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEA--IRLNF 72 (91)
Q Consensus 1 ~f~PeR~~~~~~---~---~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~--~~~~~ 72 (91)
+|+||||.+... . ..+.+++|||.|+|.|+|+++|.+|++++++.++++|++++..+.. ..+.. .....
T Consensus 416 ~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~ 492 (514)
T PLN03112 416 EFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLR---PEDIDTQEVYGM 492 (514)
T ss_pred hcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCC---cccCCCccccCc
Confidence 699999764321 1 1346899999999999999999999999999999999999865410 11222 22345
Q ss_pred EEecCCCeeEEEEEccc
Q psy11243 73 TLDLDEPCHIRLRERRR 89 (91)
Q Consensus 73 ~~~~~~~~~v~~~~r~~ 89 (91)
.+.+.+++++.+.+|..
T Consensus 493 ~~~~~~~~~~~~~~r~~ 509 (514)
T PLN03112 493 TMPKAKPLRAVATPRLA 509 (514)
T ss_pred ccccCCCeEEEeecCCc
Confidence 55567799999998853
No 28
>PLN02966 cytochrome P450 83A1
Probab=99.78 E-value=7.2e-19 Score=113.74 Aligned_cols=57 Identities=19% Similarity=0.329 Sum_probs=49.7
Q ss_pred CccCCCCcccccC--cCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeeccc
Q psy11243 1 MYLPRGYRELKSE--LYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEA 57 (91)
Q Consensus 1 ~f~PeR~~~~~~~--~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~ 57 (91)
+|+||||+++... ..+..++|||.|+|+|+|+++|.+|++++++.++++|++++.++
T Consensus 412 ~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~ 470 (502)
T PLN02966 412 EFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNG 470 (502)
T ss_pred hCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCC
Confidence 6999999865332 24568999999999999999999999999999999999988665
No 29
>KOG0684|consensus
Probab=99.77 E-value=5.3e-19 Score=111.54 Aligned_cols=83 Identities=20% Similarity=0.424 Sum_probs=66.9
Q ss_pred CccCCCCcccccCc------CCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEE
Q psy11243 1 MYLPRGYRELKSEL------YPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTL 74 (91)
Q Consensus 1 ~f~PeR~~~~~~~~------~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 74 (91)
.|+|+||++++.+. -.+.+||||+|.+.|||++||.+|++.++..+++.||+++.++ +.+... ...++.
T Consensus 397 ~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~----~~P~~d-~s~~v~ 471 (486)
T KOG0684|consen 397 DFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDG----PFPEVD-YSRMVM 471 (486)
T ss_pred hCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCC----CCCCCC-HHHhhc
Confidence 59999999665442 2345699999999999999999999999999999999999885 122332 235588
Q ss_pred ecCCCeeEEEEEcc
Q psy11243 75 DLDEPCHIRLRERR 88 (91)
Q Consensus 75 ~~~~~~~v~~~~r~ 88 (91)
.|.++++++.+.|.
T Consensus 472 ~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 472 QPEGDVRIRYKRRP 485 (486)
T ss_pred CCCCCceEEEeecC
Confidence 89999999998774
No 30
>KOG0156|consensus
Probab=99.76 E-value=1.5e-18 Score=112.03 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=62.1
Q ss_pred CccCCCCcccc-cCcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeecccccccccceeeEeeeEEEecCCC
Q psy11243 1 MYLPRGYRELK-SELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEP 79 (91)
Q Consensus 1 ~f~PeR~~~~~-~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (91)
+|+||||++.+ .......++|||.|+|+|+|..+|.+++.++++.++..|+|....+ ..+..... .....+.+
T Consensus 406 eF~PERFl~~~d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~-----~~d~~e~~-~~~~~~~p 479 (489)
T KOG0156|consen 406 EFKPERFLDSNDGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG-----KVDMEEAG-LTLKKKKP 479 (489)
T ss_pred ccChhhhcCCccccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC-----CCCCcccc-cceecCCc
Confidence 69999999874 3347889999999999999999999999999999999999998765 12222222 44444546
Q ss_pred eeEEEEEc
Q psy11243 80 CHIRLRER 87 (91)
Q Consensus 80 ~~v~~~~r 87 (91)
+.+...+|
T Consensus 480 l~~~~~~r 487 (489)
T KOG0156|consen 480 LKAVPVPR 487 (489)
T ss_pred ceeeeecC
Confidence 65555444
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.54 E-value=8.1e-15 Score=93.30 Aligned_cols=49 Identities=31% Similarity=0.661 Sum_probs=44.0
Q ss_pred CccCCCCcccccCcCCceeeecCCCCCCCcchHHHHHHHHHHHHHhhhccEEeeccc
Q psy11243 1 MYLPRGYRELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEA 57 (91)
Q Consensus 1 ~f~PeR~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~~~l~~~f~~~~~~~ 57 (91)
+|+|+||. ..++|||+|.|.|+|..||++|++++++.++.+|++....+
T Consensus 339 ~F~p~R~~--------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~ 387 (411)
T COG2124 339 EFDPERFN--------NAHLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE 387 (411)
T ss_pred hcCCCCCC--------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC
Confidence 58888886 66899999999999999999999999999999999876543
No 32
>PLN02648 allene oxide synthase
Probab=99.46 E-value=9.3e-14 Score=89.99 Aligned_cols=56 Identities=13% Similarity=0.360 Sum_probs=44.2
Q ss_pred CccCCCCcccccCcCCceeeec---------CCCCCCCcchHHHHHHHHHHHHHhhhccE-Eeeccc
Q psy11243 1 MYLPRGYRELKSELYPQCFLPF---------MTGPRNCIGGKYALLQMKVFTVSIVREFE-ILPVEA 57 (91)
Q Consensus 1 ~f~PeR~~~~~~~~~~~~~~pF---------g~G~r~C~G~~~a~~~~~~~~~~l~~~f~-~~~~~~ 57 (91)
+|+||||++.... ....+++| |+|+|.|+|+++|..|++++++.|+++|+ +++..+
T Consensus 397 ~F~PeRf~~~~~~-~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~ 462 (480)
T PLN02648 397 EFVPDRFMGEEGE-KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVD 462 (480)
T ss_pred eeCCCCCCCCCcc-ccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCC
Confidence 5999999864321 12234444 67789999999999999999999999998 888766
No 33
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=89.27 E-value=0.37 Score=27.99 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=23.7
Q ss_pred CccCCCCcccc--cCcCCceeeecCCCCCCCcch
Q psy11243 1 MYLPRGYRELK--SELYPQCFLPFMTGPRNCIGG 32 (91)
Q Consensus 1 ~f~PeR~~~~~--~~~~~~~~~pFg~G~r~C~G~ 32 (91)
+|+|+||...- -..+..+.+-|..|+-.|.|-
T Consensus 30 eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 30 EYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred EECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 58999996331 113446788999999999986
No 34
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=88.34 E-value=0.43 Score=27.76 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=24.6
Q ss_pred CccCCCCccc--ccCcCCceeeecCCCCCCCcchH
Q psy11243 1 MYLPRGYREL--KSELYPQCFLPFMTGPRNCIGGK 33 (91)
Q Consensus 1 ~f~PeR~~~~--~~~~~~~~~~pFg~G~r~C~G~~ 33 (91)
+|+|++|..- .-.....+.+-|..|+-.|.|-.
T Consensus 36 eYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 36 EYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred ccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 6899999632 12234567889999999999875
No 35
>PLN00062 TATA-box-binding protein; Provisional
Probab=86.70 E-value=0.52 Score=27.53 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=23.3
Q ss_pred CccCCCCccccc--CcCCceeeecCCCCCCCcch
Q psy11243 1 MYLPRGYRELKS--ELYPQCFLPFMTGPRNCIGG 32 (91)
Q Consensus 1 ~f~PeR~~~~~~--~~~~~~~~pFg~G~r~C~G~ 32 (91)
+|+||+|..--- .....+.+-|..|+-.|.|-
T Consensus 30 eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGa 63 (179)
T PLN00062 30 EYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 63 (179)
T ss_pred EECCccCcEEEEEeCCCcEEEEEECCCeEEEEec
Confidence 589999963311 12345788999999999985
No 36
>PRK00394 transcription factor; Reviewed
Probab=86.60 E-value=0.71 Score=26.94 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=23.4
Q ss_pred CccCCCCcccc--cCcCCceeeecCCCCCCCcch
Q psy11243 1 MYLPRGYRELK--SELYPQCFLPFMTGPRNCIGG 32 (91)
Q Consensus 1 ~f~PeR~~~~~--~~~~~~~~~pFg~G~r~C~G~ 32 (91)
+|+||||...- -..+..+.+-|..|+-.|.|-
T Consensus 29 eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tGa 62 (179)
T PRK00394 29 EYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTGA 62 (179)
T ss_pred eeCcccCceEEEEecCCceEEEEEcCCcEEEEcc
Confidence 58999996331 123446788999999999984
No 37
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=85.61 E-value=0.82 Score=26.54 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=23.6
Q ss_pred CccCCCCcccc--cCcCCceeeecCCCCCCCcch
Q psy11243 1 MYLPRGYRELK--SELYPQCFLPFMTGPRNCIGG 32 (91)
Q Consensus 1 ~f~PeR~~~~~--~~~~~~~~~pFg~G~r~C~G~ 32 (91)
+|+||+|...- ...+..+.+-|+.|+-.|.|-
T Consensus 30 ~YePe~fpgli~R~~~P~~t~lIf~sGKivitGa 63 (174)
T cd00652 30 EYNPKRFPGVIMRLREPKTTALIFSSGKMVITGA 63 (174)
T ss_pred EECCCccceEEEEcCCCcEEEEEECCCEEEEEec
Confidence 58999996431 113456788999999999984
No 38
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=83.99 E-value=0.82 Score=26.58 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=23.0
Q ss_pred CccCCCCcccc--cCcCCceeeecCCCCCCCcch
Q psy11243 1 MYLPRGYRELK--SELYPQCFLPFMTGPRNCIGG 32 (91)
Q Consensus 1 ~f~PeR~~~~~--~~~~~~~~~pFg~G~r~C~G~ 32 (91)
+|+||+|..-- ......+.+-|..|+-.|.|-
T Consensus 30 eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGa 63 (174)
T cd04516 30 EYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGA 63 (174)
T ss_pred EECCccCcEEEEEeCCCcEEEEEECCCeEEEEec
Confidence 58999996321 112345678999999999983
No 39
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=81.60 E-value=0.7 Score=23.49 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=23.1
Q ss_pred CccCCCCcccc--cCcCCceeeecCCCCCCCcch
Q psy11243 1 MYLPRGYRELK--SELYPQCFLPFMTGPRNCIGG 32 (91)
Q Consensus 1 ~f~PeR~~~~~--~~~~~~~~~pFg~G~r~C~G~ 32 (91)
+|+||+|..-- ......+.+-|..|+=.|.|-
T Consensus 32 ~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 32 EYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred EEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 48999995321 113456788999999999986
No 40
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=77.72 E-value=1.8 Score=25.20 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=23.9
Q ss_pred CccCCCCccccc--CcCCceeeecCCCCCCCcchH
Q psy11243 1 MYLPRGYRELKS--ELYPQCFLPFMTGPRNCIGGK 33 (91)
Q Consensus 1 ~f~PeR~~~~~~--~~~~~~~~pFg~G~r~C~G~~ 33 (91)
+|+||+|..--- ......++-|..|.=.|.|..
T Consensus 122 ~YePE~fPgliyr~~~p~~t~lIF~sGkivitGak 156 (174)
T cd04517 122 SYEPELHPGVVYRITGPRATLSIFSTGSVTVTGAR 156 (174)
T ss_pred EeCCccCCEEEEEECCCcEEEEEeCCCEEEEEecC
Confidence 589999963321 124567889999999999854
No 41
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=75.36 E-value=3 Score=23.46 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=16.8
Q ss_pred CCCcchHHHHHHHHHHHHHhhhc
Q psy11243 27 RNCIGGKYALLQMKVFTVSIVRE 49 (91)
Q Consensus 27 r~C~G~~~a~~~~~~~~~~l~~~ 49 (91)
-+|.|+.||..++-.++..|+..
T Consensus 18 yN~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 18 YNCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp EETTS----HHHHHHHHHHHHHS
T ss_pred ecccchHHHHHHHHHHHHHHhcC
Confidence 36999999999999999999885
No 42
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=74.92 E-value=0.63 Score=18.37 Aligned_cols=7 Identities=14% Similarity=0.458 Sum_probs=5.5
Q ss_pred ccCCCCc
Q psy11243 2 YLPRGYR 8 (91)
Q Consensus 2 f~PeR~~ 8 (91)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 5899984
No 43
>KOG3506|consensus
Probab=74.78 E-value=1.5 Score=20.54 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=9.4
Q ss_pred eecCCCCCCCc
Q psy11243 20 LPFMTGPRNCI 30 (91)
Q Consensus 20 ~pFg~G~r~C~ 30 (91)
.+||-|.|+|-
T Consensus 12 ~kfg~GsrsC~ 22 (56)
T KOG3506|consen 12 RKFGQGSRSCR 22 (56)
T ss_pred cccCCCCccee
Confidence 47999999994
No 44
>KOG3302|consensus
Probab=74.45 E-value=3.5 Score=24.51 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=21.7
Q ss_pred CccCCCCccc--ccCcCCceeeecCCCCCCCcch
Q psy11243 1 MYLPRGYREL--KSELYPQCFLPFMTGPRNCIGG 32 (91)
Q Consensus 1 ~f~PeR~~~~--~~~~~~~~~~pFg~G~r~C~G~ 32 (91)
+|+|.||..- .......+..-|+.|+-.|.|-
T Consensus 51 ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA 84 (200)
T KOG3302|consen 51 EYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGA 84 (200)
T ss_pred ccCcccccEEEEEEcCCceEEEEecCCcEEEecc
Confidence 5889999521 1112345667899999999974
No 45
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=65.12 E-value=6.3 Score=20.21 Aligned_cols=20 Identities=5% Similarity=0.180 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhccEEeecc
Q psy11243 37 LQMKVFTVSIVREFEILPVE 56 (91)
Q Consensus 37 ~~~~~~~~~l~~~f~~~~~~ 56 (91)
..|+-++..+|..|||.+..
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 57888999999999999865
No 46
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=58.22 E-value=12 Score=20.41 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=16.9
Q ss_pred CCCcchHHHHHHHHHHHHHhhh
Q psy11243 27 RNCIGGKYALLQMKVFTVSIVR 48 (91)
Q Consensus 27 r~C~G~~~a~~~~~~~~~~l~~ 48 (91)
|.|+|..++......++..|-.
T Consensus 5 H~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 5 HLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp S--HHHHHHHHHHHHHHHHHTS
T ss_pred CcCccHHHHHHHHHHHHHHcCC
Confidence 7899999999999888887644
No 47
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=50.97 E-value=15 Score=15.03 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=13.3
Q ss_pred cCCceeeecCCCCCCCc
Q psy11243 14 LYPQCFLPFMTGPRNCI 30 (91)
Q Consensus 14 ~~~~~~~pFg~G~r~C~ 30 (91)
..+.+|+|+.+..|.|.
T Consensus 15 p~~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 15 PRDNTYQPYDGPRRFCR 31 (31)
T ss_pred CCCCcEeCCCCccccCc
Confidence 34568999998888884
No 48
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=46.69 E-value=5.4 Score=21.54 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.0
Q ss_pred CceeeecCCCCCCCcch
Q psy11243 16 PQCFLPFMTGPRNCIGG 32 (91)
Q Consensus 16 ~~~~~pFg~G~r~C~G~ 32 (91)
..+.+|||.|.-.|+|-
T Consensus 104 gss~~p~GaGaAaC~aA 120 (131)
T PF14459_consen 104 GSSNNPFGAGAAACFAA 120 (131)
T ss_pred CcccCCcCccHHHHHHH
Confidence 45678999999999874
No 49
>PHA03162 hypothetical protein; Provisional
Probab=42.89 E-value=20 Score=19.98 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=16.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHh
Q psy11243 23 MTGPRNCIGGKYALLQMKVFTVSI 46 (91)
Q Consensus 23 g~G~r~C~G~~~a~~~~~~~~~~l 46 (91)
++|.+.||++...+-++..-++.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468899999887766666555543
No 50
>KOG2376|consensus
Probab=37.66 E-value=11 Score=26.37 Aligned_cols=8 Identities=13% Similarity=0.094 Sum_probs=6.5
Q ss_pred cCCCCccc
Q psy11243 3 LPRGYREL 10 (91)
Q Consensus 3 ~PeR~~~~ 10 (91)
|||||+..
T Consensus 582 DPERWLP~ 589 (652)
T KOG2376|consen 582 DPERWLPR 589 (652)
T ss_pred Chhhcccc
Confidence 79999854
No 51
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=35.67 E-value=18 Score=16.91 Aligned_cols=10 Identities=30% Similarity=0.776 Sum_probs=8.4
Q ss_pred ecCCCCCCCc
Q psy11243 21 PFMTGPRNCI 30 (91)
Q Consensus 21 pFg~G~r~C~ 30 (91)
-||-|.|.|.
T Consensus 11 ~yGkGsr~C~ 20 (54)
T PTZ00218 11 TYGKGSRQCR 20 (54)
T ss_pred cCCCCCCeee
Confidence 4899999995
No 52
>PF04798 Baculo_19: Baculovirus 19 kDa protein conserved region; InterPro: IPR006883 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf96; it is a family of uncharacterised viral proteins.
Probab=35.42 E-value=11 Score=21.40 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=13.7
Q ss_pred CceeeecCCCCCCCcchHHH
Q psy11243 16 PQCFLPFMTGPRNCIGGKYA 35 (91)
Q Consensus 16 ~~~~~pFg~G~r~C~G~~~a 35 (91)
-+.++- |.+.+.||+..+|
T Consensus 57 lYyYle-gss~~~CP~nE~a 75 (146)
T PF04798_consen 57 LYYYLE-GSSSVFCPPNEFA 75 (146)
T ss_pred EEEEEe-ccccccCCCCceE
Confidence 355666 8899999976554
No 53
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=28.21 E-value=29 Score=10.66 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=3.3
Q ss_pred eecCCC
Q psy11243 20 LPFMTG 25 (91)
Q Consensus 20 ~pFg~G 25 (91)
..||.|
T Consensus 6 Y~FGLG 11 (11)
T PF05953_consen 6 YSFGLG 11 (11)
T ss_pred cccCcC
Confidence 456654
No 54
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=27.76 E-value=29 Score=16.32 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=4.7
Q ss_pred CccCCCC
Q psy11243 1 MYLPRGY 7 (91)
Q Consensus 1 ~f~PeR~ 7 (91)
+|+|+|-
T Consensus 38 Dyr~dRL 44 (60)
T PF11720_consen 38 DYRPDRL 44 (60)
T ss_pred cCCCCcE
Confidence 4777775
No 55
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=26.97 E-value=27 Score=15.52 Aligned_cols=8 Identities=13% Similarity=0.356 Sum_probs=4.1
Q ss_pred cCCCCccc
Q psy11243 3 LPRGYREL 10 (91)
Q Consensus 3 ~PeR~~~~ 10 (91)
+||||...
T Consensus 33 ~peRF~~~ 40 (49)
T PF13765_consen 33 NPERFDHW 40 (49)
T ss_dssp -TTS-SSS
T ss_pred CCCccCCc
Confidence 68888643
No 56
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=25.73 E-value=1.2e+02 Score=16.25 Aligned_cols=29 Identities=10% Similarity=-0.018 Sum_probs=18.0
Q ss_pred ceeeecCCCCCCCc--chHHHHHHHHHHHHH
Q psy11243 17 QCFLPFMTGPRNCI--GGKYALLQMKVFTVS 45 (91)
Q Consensus 17 ~~~~pFg~G~r~C~--G~~~a~~~~~~~~~~ 45 (91)
..+++++-+.|.|| |...+..-+......
T Consensus 51 ~~~~~~SCk~R~CP~C~~~~~~~W~~~~~~~ 81 (111)
T PF14319_consen 51 EKIVYNSCKNRHCPSCQAKATEQWIEKQRED 81 (111)
T ss_pred eEEecCcccCcCCCCCCChHHHHHHHHHHhh
Confidence 35789999999998 444343333333333
No 57
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=25.38 E-value=94 Score=18.87 Aligned_cols=22 Identities=9% Similarity=-0.010 Sum_probs=16.5
Q ss_pred CCCCcchHHHHHHHHHHHHHhh
Q psy11243 26 PRNCIGGKYALLQMKVFTVSIV 47 (91)
Q Consensus 26 ~r~C~G~~~a~~~~~~~~~~l~ 47 (91)
.|.|||..++.....+++-.|=
T Consensus 23 GH~cPg~~lG~r~~~iA~e~Lg 44 (206)
T COG2191 23 GHLCPGLALGYRMALIAMEELG 44 (206)
T ss_pred CcCCCchHHHHHHHHHHHHHcC
Confidence 4899999888877777665543
No 58
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.30 E-value=42 Score=18.54 Aligned_cols=11 Identities=55% Similarity=1.029 Sum_probs=7.8
Q ss_pred eecCCCCCCCcchH
Q psy11243 20 LPFMTGPRNCIGGK 33 (91)
Q Consensus 20 ~pFg~G~r~C~G~~ 33 (91)
.|||.| |+|..
T Consensus 94 ~p~~FG---CiGC~ 104 (152)
T COG4050 94 APFGFG---CIGCA 104 (152)
T ss_pred CCcccc---eeccc
Confidence 478887 77765
No 59
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=22.91 E-value=41 Score=17.42 Aligned_cols=12 Identities=42% Similarity=0.755 Sum_probs=8.7
Q ss_pred eeeecCCCCCCCc
Q psy11243 18 CFLPFMTGPRNCI 30 (91)
Q Consensus 18 ~~~pFg~G~r~C~ 30 (91)
.-.|||.|. .|-
T Consensus 13 IpYPFgi~~-~C~ 24 (106)
T PF13947_consen 13 IPYPFGIGP-GCG 24 (106)
T ss_pred ecCCCccCC-CCC
Confidence 447999988 574
No 60
>COG5598 Trimethylamine:corrinoid methyltransferase [Coenzyme metabolism]
Probab=20.42 E-value=1.5e+02 Score=20.67 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=33.5
Q ss_pred cCCceeeecCCCCCCC---cchHHHHHHHHHHHHHhhhccEEe
Q psy11243 14 LYPQCFLPFMTGPRNC---IGGKYALLQMKVFTVSIVREFEIL 53 (91)
Q Consensus 14 ~~~~~~~pFg~G~r~C---~G~~~a~~~~~~~~~~l~~~f~~~ 53 (91)
.++..|.|+++.++.| -|+..+..+-..-+++|...++.-
T Consensus 132 G~~v~f~~~~gap~v~Dl~~grr~gtl~D~~n~~kLa~~~~~i 174 (526)
T COG5598 132 GNNVHFGPAYGAPNVRDLDKGRRYGTLEDYRNLAKLAQHAPNI 174 (526)
T ss_pred CceeEEEecCCCceeeeccCCcccchHHHHHHHHHHHhhcchh
Confidence 4556788999999888 488889999999999999988753
Done!