RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11243
(91 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 48.4 bits (116), Expect = 4e-08
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 56
FLPF GPRNC+G + A ++MK+F ++++ FE+
Sbjct: 400 FLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPP 437
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 43.6 bits (103), Expect = 2e-06
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYK 59
F+PF GPRNCIG +A+++ K+ ++ +F + Y+
Sbjct: 452 FIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR 492
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 42.7 bits (100), Expect = 4e-06
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMA 62
F+ F +GPR C+G ALLQMK+ + I++ ++ +E +K A
Sbjct: 437 FMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGHKIEA 480
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 37.0 bits (86), Expect = 5e-04
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 22 FMTGPRNCIGGKYALLQMKVFTVSIVREFEI 52
F G R C+G + AL++MK V++VR F+I
Sbjct: 438 FQAGLRVCLGKEMALMEMKSVAVAVVRRFDI 468
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 36.1 bits (83), Expect = 8e-04
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 20 LPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEP 79
+PF G R C G A+L ++ F ++VREFE V +V+ A + FT + +P
Sbjct: 453 MPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPG----DEVDFAEKREFTTVMAKP 508
Query: 80 CHIRLRERR 88
RL RR
Sbjct: 509 LRARLVPRR 517
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 35.7 bits (82), Expect = 0.001
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 18 CFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFE 51
+LPF GPR C+G +A + V T +VR F+
Sbjct: 530 SYLPFGGGPRKCVGDMFASFENVVATAMLVRRFD 563
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 34.8 bits (80), Expect = 0.002
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVR--EFEILPVE--AYKTMA 62
P F F GPR C+G A LQMK+ + R +F+++P Y+ M
Sbjct: 450 PFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHPVKYRMMT 500
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 34.7 bits (80), Expect = 0.003
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEI 52
F+PF GPRNC+G ++A ++ + +I+ F++
Sbjct: 419 FMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKL 452
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 34.4 bits (79), Expect = 0.004
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEI 52
++PF GPR C+G ++ALL+ V +++ ++
Sbjct: 419 YIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDL 452
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 33.7 bits (77), Expect = 0.006
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 4 PRGYRELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREF 50
RG S F+PF GPR C G + A L+M VF +V F
Sbjct: 414 NRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNF 460
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 32.4 bits (74), Expect = 0.016
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEIL 53
LPF GP C+G A L++KV ++R F +L
Sbjct: 349 HLPFGGGPHRCLGAALARLELKVALAELLRRFPLL 383
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 29.6 bits (66), Expect = 0.16
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYK 59
F PF GPR C G + A + + VF +V F +P E K
Sbjct: 408 FTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDK 448
>gnl|CDD|238595 cd01190, INT_SG5, INT_SG5, DNA breaking-rejoining enzymes,
integrase/recombinases subgroup 5, N- and C-terminal
domains. The CD contains mainly predicted bacterial
integrase/recombinases.
Length = 260
Score = 29.3 bits (66), Expect = 0.22
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 57 AYKTMAQVEEAIRLNF-TLDLDEPCHIRLRERRRKD 91
Y T A+V EA L L LD P +RL + RK+
Sbjct: 104 LYNTGARVSEATGLKVDDLQLDPPAQVRLIGKGRKE 139
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 28.5 bits (64), Expect = 0.40
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILP 54
FLPF G R+C G AL + + +V+ FE+LP
Sbjct: 435 FLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLP 470
>gnl|CDD|179812 PRK04293, PRK04293, adenylosuccinate synthetase; Provisional.
Length = 333
Score = 26.0 bits (58), Expect = 2.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 47 VREFEILPVEAYKTMAQVEEAIRLNFTL 74
V E++ LP EA K + ++EE + + TL
Sbjct: 292 VTEYDKLPPEAKKFIEEIEEELGVPVTL 319
>gnl|CDD|211976 TIGR04253, mesacon_CoA_iso, mesaconyl-CoA isomerase. Members of
this protein family belong by homology to the family of
CoA transferases. However, the characterized member from
Chloroflexus aurantiacus appears to perform an
intramolecular transfer, making it an isomerase. The
enzyme converts mesaconyl-C1-CoA to mesaconyl-C4-CoA as
part of the bicyclic 3-hydroxyproprionate pathway for
carbon fixation.
Length = 403
Score = 26.1 bits (57), Expect = 2.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 6 GYRELKSELYPQCFLPFMTGP 26
G E+ L PQ LPFMTGP
Sbjct: 128 GGSEVDYTLNPQLGLPFMTGP 148
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 25.8 bits (57), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVF 42
FLPF G R C G A L++ +F
Sbjct: 423 AGTFLPFGLGSRLCPGNDLAKLEISIF 449
>gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy
production and conversion].
Length = 575
Score = 25.9 bits (57), Expect = 3.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 50 FEILPVEAYKTMAQVEEAIRLNFTLDL 76
F+I P E K +A+V E + L ++ L
Sbjct: 210 FDITPREIIKGLAEVNERLGLPHSIHL 236
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 25.3 bits (55), Expect = 5.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVF 42
P F+PF G +C G + A L++ V
Sbjct: 398 PNTFMPFGNGTHSCPGNELAKLEISVL 424
>gnl|CDD|217045 pfam02452, PemK, PemK-like protein. PemK is a growth inhibitor in
E. coli known to bind to the promoter region of the Pem
operon, auto-regulating synthesis. This Pfam family
consists of the PemK protein in addition to ChpA, ChpB
and other PemK-like proteins.
Length = 110
Score = 24.9 bits (55), Expect = 5.9
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 18 CFLPFMTGPRNCIGGKYALLQMKVFTVS---IVREFEILPVEAYKTMAQVEEAIRLNF 72
LP N + LL ++ TV + ++ L E M +V A+ +
Sbjct: 57 VELPPSGLDLNGLKPSVVLLD-QIRTVDKARLGKKIGRLSDE---DMEEVLAALAILL 110
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional.
Length = 590
Score = 24.9 bits (55), Expect = 7.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 54 PVEAYKTMAQVEEAI 68
PVEA +TMA + I
Sbjct: 327 PVEAVQTMATIAVRI 341
>gnl|CDD|184169 PRK13591, ubiA, prenyltransferase; Provisional.
Length = 307
Score = 24.7 bits (54), Expect = 8.1
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 11 KSELYPQCFLPFMTG---PRNCIGGKYAL-----LQMKVFTVSI 46
+ FLPF+TG + GK+AL L +K V I
Sbjct: 118 MDGMLLLAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGI 161
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 24.5 bits (53), Expect = 9.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 29 CIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQV 64
GG+ LQ + +IV F LP+ AY T+ +
Sbjct: 736 YGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAI 771
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 24.9 bits (54), Expect = 9.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 31 GGKYALLQMKVFTVSIVREFEILPVEAYKTMAQV 64
GGK L+ + +IV F +P+ AY T+ V
Sbjct: 805 GGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAV 838
>gnl|CDD|226574 COG4089, COG4089, Predicted membrane protein [Function unknown].
Length = 235
Score = 24.3 bits (53), Expect = 9.4
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 36 LLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDEPCHIRLRERRR 89
LL M +FT S V+ F I+ V A + A+ ++F + P +I + E ++
Sbjct: 27 LLMMFIFTGSFVQLFSIVGVSA-------DTALLISFLSLVGSPVNIPIYELKK 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.144 0.437
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,785,682
Number of extensions: 390739
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 31
Length of query: 91
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 33
Effective length of database: 8,365,070
Effective search space: 276047310
Effective search space used: 276047310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)