RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11243
(91 letters)
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 62.0 bits (151), Expect = 3e-13
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 75
+ F PF GPR C G A++ MK V+++R F + ++ Q E+I+ L
Sbjct: 424 YRYFQPFGFGPRGCAGKYIAMVMMKAILVTLLRRFHVKTLQ-----GQCVESIQKIHDLS 478
Query: 76 L-----DEPCHIRLRER 87
L + R
Sbjct: 479 LHPDETKNMLEMIFTPR 495
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 61.5 bits (150), Expect = 6e-13
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 75
+ PF G R+CIG ++A +++KV +++ E V ++ TL
Sbjct: 376 RFTYFPFSLGHRSCIGQQFAQMEVKVVMAKLLQRLEFRLVPGQ------RFGLQEQATLK 429
Query: 76 LDEPCHIRLRERRRK 90
+P LR R +
Sbjct: 430 PLDPVLCTLRPRGWQ 444
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 57.3 bits (139), Expect = 2e-11
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78
F+ F G CIG K+ LLQ+K + R ++ + +
Sbjct: 385 FIGFGAGVHKCIGQKFGLLQVKTILATAFRSYDFQLLRDE----VPDPDYHTMVVGPTAS 440
Query: 79 PCHIRLRERR 88
C ++ R+
Sbjct: 441 QCRVKYIRRK 450
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 56.8 bits (138), Expect = 2e-11
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 9 ELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAI 68
+ K + P + PF +GPRNCIG ++AL+ MK+ + +++ F P + +T ++ +
Sbjct: 400 KNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCK--ETQIPLK--L 455
Query: 69 RLNFTLDLDEPCHIRLRER 87
L L ++P +++ R
Sbjct: 456 SLGGLLQPEKPVVLKVESR 474
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 56.1 bits (136), Expect = 5e-11
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 9 ELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAI 68
E S + F PF G R CIG ++AL + + +++ F+ Y E I
Sbjct: 380 ENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNY------ELDI 433
Query: 69 RLNFTLDLDEPCHIRLRERRRK 90
+ TL +P ++ + +K
Sbjct: 434 KETLTL---KPEGFVVKAKSKK 452
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 53.9 bits (130), Expect = 3e-10
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78
LPF G R CIG + A LQ+ + I+++++I+ + + L
Sbjct: 420 HLPFGIGKRMCIGRRLAELQLHLALCWIIQKYDIVATD------NEPVEMLHLGILVPSR 473
Query: 79 PCHIRLRER 87
I R R
Sbjct: 474 ELPIAFRPR 482
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 53.0 bits (128), Expect = 5e-10
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78
+ PF G R C+G +ALL+ + + R F + P+ + TL +
Sbjct: 326 YFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFP--------RVLAQVTLRPEG 377
Query: 79 PCHIRLRERRR 89
R RE R
Sbjct: 378 GLPARPREEVR 388
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 52.6 bits (126), Expect = 7e-10
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 9 ELKSELYPQCFLPF-------MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 56
E +L G + C G + +L ++F + I R ++ +E
Sbjct: 417 EEGEKLLRHVLWSNGPETETPTVGNKQCAGKDFVVLVARLFVIEIFRRYDSFDIE 471
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 52.5 bits (126), Expect = 9e-10
Identities = 12/72 (16%), Positives = 30/72 (41%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 75
+P+ G +C+G YA+ +K F ++ ++ + A + + + + +
Sbjct: 418 KNYNMPWGAGHNHCLGRSYAVNSIKQFVFLVLVHLDLELINADVEIPEFDLSRYGFGLMQ 477
Query: 76 LDEPCHIRLRER 87
+ +R R R
Sbjct: 478 PEHDVPVRYRIR 489
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 52.3 bits (126), Expect = 1e-09
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78
++PF G C+G +A++Q+K ++RE+E + ++ + + L +
Sbjct: 384 WIPFGAGRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQPPESYRNDHSKM----VVQLAQ 439
Query: 79 PCHIRLRER 87
P +R R R
Sbjct: 440 PAAVRYRRR 448
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 52.3 bits (126), Expect = 1e-09
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78
++PF G CIG +A +Q+K +++R +E ++ Y +
Sbjct: 391 YVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGY-----FPTVNYTTMIHTPEN 445
Query: 79 PCHIRLRER 87
P IR + R
Sbjct: 446 PV-IRYKRR 453
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 51.9 bits (125), Expect = 1e-09
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78
L F G R C+G + A L+M +F ++++ F + + + N L ++
Sbjct: 412 NLGFGWGVRQCLGRRIAELEMTIFLINMLENFRV------EIQHLSDVGTTFNLILMPEK 465
Query: 79 PCHIRLRERRRK 90
P ++
Sbjct: 466 PISFTFWPFNQE 477
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 51.9 bits (125), Expect = 2e-09
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78
PF G R C +++ Q+ + T ++ ++ V +A+R+ TL +
Sbjct: 400 MKPFSAGKRKCPSDHFSMAQLTLITAALATKYRFEQVAGS------NDAVRVGITLRPHD 453
Query: 79 PCHIRLRERRRKD 91
+R R
Sbjct: 454 L-LVRPVARHHHH 465
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 51.5 bits (124), Expect = 2e-09
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 75
P +PF G R C+G ++A L+MK+F ++++F+ + + + +
Sbjct: 378 PFAHVPFGGGLRECLGKEFARLEMKLFATRLIQQFDWTLLPGQ------NLELVVTPSPR 431
Query: 76 LDEPCHIRLR 85
+ ++L
Sbjct: 432 PKDNLRVKLH 441
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 49.3 bits (118), Expect = 1e-08
Identities = 12/70 (17%), Positives = 31/70 (44%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78
++PF +G C G +A+ ++K F + ++ FE+ +E ++++ L
Sbjct: 417 YMPFGSGATICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILPPLN 476
Query: 79 PCHIRLRERR 88
+ + +
Sbjct: 477 DIEFKYKFKH 486
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 47.9 bits (114), Expect = 4e-08
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 16 PQCFLPFMTGP---------RNCIGGKYALLQMKVFTVSIVREFEILPVE 56
++ + GP + C G + +L ++F + + R ++ +E
Sbjct: 404 LLKYVWWSNGPETESPTVENKQCAGKDFVVLITRLFVIELFRRYDSFEIE 453
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 40.4 bits (95), Expect = 2e-05
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78
+P+ T C G +A+ +K +I+ F++ + T+ V+ + L
Sbjct: 402 SVPWGTEDNLCPGRHFAVHAIKELVFTILTRFDVELCDKNATVPLVDPSRYGFGILQPAG 461
Query: 79 PCHIRLRER 87
IR R R
Sbjct: 462 DLEIRYRIR 470
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 37.4 bits (87), Expect = 2e-04
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 4/41 (9%)
Query: 16 PQCFLPFMTGP----RNCIGGKYALLQMKVFTVSIVREFEI 52
+P G C G + MK +V + E
Sbjct: 346 LFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEY 386
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 37.0 bits (86), Expect = 3e-04
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 4/41 (9%)
Query: 16 PQCFLPFMTGP----RNCIGGKYALLQMKVFTVSIVREFEI 52
F+P G C G L MKV +V
Sbjct: 344 SFNFIPQGGGDHYLGHRCPGEWIVLAIMKVAAHLLVNAMRY 384
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 56
P+ FLPF G R C+G A +++ +F S+++ F
Sbjct: 408 PEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSVPT 448
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 15 YPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTM 61
Y F PF TG R C G A +++ + +I++ F + P+ K +
Sbjct: 402 YSDYFKPFSTGKRVCAGEGLARMELFLLLCAILQHFNLKPLVDPKDI 448
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 35.3 bits (82), Expect = 0.001
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLDLDE 78
L F G R C+G A L++ V +++ F +LP ++ L +
Sbjct: 417 ALAFGCGARVCLGESLARLELFVVLARLLQAFTLLPPPVGAL-PSLQPDPYCGVNL-KVQ 474
Query: 79 PCHIRLRER 87
P +RL+ R
Sbjct: 475 PFQVRLQPR 483
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 34.9 bits (81), Expect = 0.001
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 56
+ F G R CIG + + +Q+ +F + + +
Sbjct: 417 TSRVMIFSVGKRRCIGEELSKMQLFLFISILAHQCDFRANP 457
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTM 61
F+PF G RNC G A +++ +F ++++ F + ++ K +
Sbjct: 404 SDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQNFRLKSSQSPKDI 449
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 34.5 bits (80), Expect = 0.002
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 56
+ F G R CIG A ++ +F ++++ E
Sbjct: 424 MMLFGMGKRRCIGEVLAKWEIFLFLAILLQQLEFSVPP 461
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 34.5 bits (80), Expect = 0.002
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTM 61
+ F+PF G R C+G A +++ +F SI++ F + + K +
Sbjct: 405 SKYFMPFSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNL 450
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 33.7 bits (78), Expect = 0.004
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 56
+ +PF G R+C+G A ++M +F ++++ F +
Sbjct: 409 KEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPH 449
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 31.7 bits (73), Expect = 0.017
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 56
+LPF GPR+CIG A ++ + +++ F++ +
Sbjct: 414 YLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPD 451
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 31.4 bits (72), Expect = 0.021
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTM 61
+ F+PF G R C+G A ++ +F +I++ F I + +
Sbjct: 404 NEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDI 449
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.144 0.437
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,445,707
Number of extensions: 74253
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 30
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)