RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11243
(91 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 59.7 bits (143), Expect = 8e-13
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 5 RGYRELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQV 64
R ++ K + P + PF +GPRNCIG ++AL+ MK+ + +++ F P + Q+
Sbjct: 391 RFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKE----TQI 446
Query: 65 EEAIRLNFTLDLDEPCHIRLRER 87
+ L L ++P +++ R
Sbjct: 447 PLKLSLGGLLQPEKPVVLKVESR 469
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 55.3 bits (131), Expect = 4e-11
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 75
++PF G C+G +A++Q+K ++RE+E + + +
Sbjct: 377 RWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQP----PESYRNDHSKMVVQ 432
Query: 76 LDEPCHIRLRER 87
L +P +R R R
Sbjct: 433 LAQPAAVRYRRR 444
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 54.8 bits (130), Expect = 5e-11
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 75
+ PF G R C+G +ALL+ + + R F + P+ + TL
Sbjct: 323 SGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLP--------FPRVLAQVTLR 374
Query: 76 LDEPCHIRLRE 86
+ R RE
Sbjct: 375 PEGGLPARPRE 385
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 51.6 bits (122), Expect = 8e-10
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 75
F PF G R CIG ++AL + + +++ F+ Y E I+ TL
Sbjct: 385 QHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNY------ELDIKETLTLK 438
Query: 76 LDEPCHIRLRERR 88
E ++ + ++
Sbjct: 439 P-EGFVVKAKSKK 450
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 50.5 bits (119), Expect = 2e-09
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTM 61
+ F+PF G R C+G A +++ +F SI++ F + + K +
Sbjct: 397 SKYFMPFSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNL 442
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 49.7 bits (117), Expect = 3e-09
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 75
+ F+PF G R C+G A ++ +F +I++ F I ++ R + +
Sbjct: 396 NEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPV---PPEDIDLTPRESGVGN 452
Query: 76 LDEPCHIRLRER 87
+ IR R
Sbjct: 453 VPPSYQIRFLAR 464
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 49.0 bits (115), Expect = 6e-09
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 75
+ +PF G R+C+G A ++M +F ++++ F + + RL TL
Sbjct: 396 KEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHELV----PDLKPRLGMTLQ 451
Query: 76 LDEPCHIRLRER 87
+P I R
Sbjct: 452 P-QPYLICAERR 462
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 43.3 bits (100), Expect = 6e-07
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 56
P L F +G C+G A L+ ++ ++F + +
Sbjct: 304 PNPHLSFGSGIHLCLGAPLARLEARIALEEFAKKFRVKEIV 344
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 42.5 bits (98), Expect = 1e-06
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPV 55
P L F G C+G A L+MK+F ++ + + + +
Sbjct: 364 PNRHLGFGWGAHMCLGQHLAKLEMKIFFEELLPKLKSVEL 403
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 42.5 bits (98), Expect = 1e-06
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPV 55
+ L F G C+G A L+ +V ++ F L +
Sbjct: 336 TRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSL 375
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 41.7 bits (96), Expect = 2e-06
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 9 ELKSELYPQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEIL 53
+ + L F G C+G A +++ + S+ F L
Sbjct: 328 TFDATRTVKEHLAFGHGVHFCLGAPLARMEVTLALESLFGRFPDL 372
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 41.7 bits (96), Expect = 2e-06
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEIL 53
+ F GP C G + ++ V ++ F L
Sbjct: 335 GNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHL 372
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 41.6 bits (96), Expect = 2e-06
Identities = 11/85 (12%), Positives = 20/85 (23%), Gaps = 10/85 (11%)
Query: 8 RELKSELYPQCFLPF----MTGPRNCIGGKYALLQMKVFTVSIVREFEILPVEAYKTMAQ 63
R + E +P C G + MK +V + E E +
Sbjct: 333 RFAEREENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQSLHYSL 392
Query: 64 VEEAIRLNFTLDLDEPCHIRLRERR 88
+ + R+
Sbjct: 393 AR------MPSLPESGFVMSGIRRK 411
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 40.9 bits (94), Expect = 4e-06
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFE 51
PQ L F G CI A ++ ++ ++F
Sbjct: 335 PQDPLGFGFGDHRCIAEHLAKAELTTVFSTLYQKFP 370
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 41.0 bits (94), Expect = 4e-06
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPVE 56
L + GP C G A L+ ++ +I R F + ++
Sbjct: 337 TSASLAYGRGPHVCPGVSLARLEAEIAVGTIFRRFPEMKLK 377
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 40.6 bits (93), Expect = 6e-06
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEILPV 55
P L F +G C+G A L+ ++ + F + +
Sbjct: 304 PNPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRFRHIEI 343
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 40.5 bits (93), Expect = 6e-06
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFE 51
P L F G C G ++ +++++
Sbjct: 331 PTSHLAFGRGQHFCPGSALGRRHAQIGIEALLKKMP 366
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 40.2 bits (92), Expect = 6e-06
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFEIL 53
P + F G +C+G A L+++ + R F L
Sbjct: 330 PIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPAL 367
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 40.2 bits (92), Expect = 7e-06
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 16 PQCFLPFMTGPRNCIGGKYALLQMKVFTVSIVREFE 51
P + F GP C GG A L+ ++ +++
Sbjct: 333 PNPHVSFGFGPHYCPGGMLARLESELLVDAVLDRVP 368
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 39.7 bits (91), Expect = 1e-05
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFE 51
+ F G C+G A +++ ++ R F
Sbjct: 343 DVGFGHGIHYCVGAALARSMLRMAYQTLWRRFP 375
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 37.8 bits (86), Expect = 5e-05
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 19 FLPFMTGPRNCIGGKYALLQMKVFTVSIVREFE 51
F G C+G A ++ V +
Sbjct: 337 HTTFGHGSHLCLGQHLARREIIVTLKEWLTRIP 369
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 24.1 bits (51), Expect = 3.3
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 38 QMKVFTVSIVREFEILPVEAYKTMAQVEEAIRLNFTLD 75
+ F +++ +I P + + Q E + F L+
Sbjct: 19 SVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN 56
>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein
{Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}
Length = 359
Score = 23.4 bits (50), Expect = 5.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 45 SIVREFEILPVEAYKTMAQVEEAIRLN 71
SI R E+ PVE A +E R +
Sbjct: 228 SISRWTELFPVEQLNKPASIEGGFRSD 254
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.144 0.437
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 354,669
Number of extensions: 14484
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 23
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)