BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11244
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H2B|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Baicalin
Length = 547
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 7 PCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLD 66
P + P G YP +VTS D R+V VVQA A+ +YLG + ++++++GN++S G+PILLD
Sbjct: 251 PPSKEVPAGKYPFIVTSD-DGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLD 309
Query: 67 KHIQE 71
I E
Sbjct: 310 SSIPE 314
>pdb|4H2I|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Iii
(Closed) In Complex With Ampcp
Length = 532
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 7 PCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLD 66
P + P G YP +VTS D R+V VVQA A+ +YLG + ++++++GN++S G+PILLD
Sbjct: 228 PPSKEVPAGKYPFIVTSD-DGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLD 286
Query: 67 KHIQE 71
I E
Sbjct: 287 SSIPE 291
>pdb|4H2F|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form I (Open)
In Complex With Adenosine
pdb|4H2G|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Adenosine
Length = 546
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 7 PCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLD 66
P + P G YP +VTS D R+V VVQA A+ +YLG + ++++++GN++S G+PILLD
Sbjct: 250 PPSKEVPAGKYPFIVTSD-DGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLD 308
Query: 67 KHIQE 71
I E
Sbjct: 309 SSIPE 313
>pdb|4H1Y|P Chain P, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Psb11552
Length = 546
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 7 PCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLD 66
P + P G YP +VTS D R+V VVQA A+ +YLG + ++++++GN++S G+PILLD
Sbjct: 250 PPSKEVPAGKYPFIVTSD-DGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLD 308
Query: 67 KHIQE 71
I E
Sbjct: 309 SSIPE 313
>pdb|4H1S|A Chain A, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
pdb|4H1S|B Chain B, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
Length = 530
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 7 PCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLD 66
P + P G YP +VTS D R+V VVQA A+ +YLG + ++++++GN++S G+PILL+
Sbjct: 228 PPSKEVPAGKYPFIVTSD-DGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLN 286
Query: 67 KHIQE 71
I E
Sbjct: 287 SSIPE 291
>pdb|2Z1A|A Chain A, Crystal Structure Of 5'-Nucleotidase Precursor From
Thermus Thermophilus Hb8
Length = 552
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 9 PHDK--PKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILL 65
PH + P GPYP VV + + + VLVVQA + + +GL+ + ++ KG +++++G+ +L+
Sbjct: 247 PHKELSPAGPYPTVVKNP-EGKDVLVVQAWEWGKVVGLLEVTFDAKGELLAYKGEALLM 304
>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
pdb|1W7M|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With L-Phe
Length = 422
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 49 YNDKGNIVSWRGDPILLDKHIQEVENNTVIELPNHAHCSTLETYGNQALFY 99
++ G V W P + KH++ V N+V P + + E++ + L +
Sbjct: 249 FSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLF 299
>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Pmp Form
Length = 422
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 49 YNDKGNIVSWRGDPILLDKHIQEVENNTVIELPNHAHCSTLETYGNQALFY 99
++ G V W P + KH++ V N+V P + + E++ + L +
Sbjct: 249 FSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLF 299
>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVS|B Chain B, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVU|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVU|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVX|A Chain A, Human Kynurenine Aminotransferase I In Complex With Tris
pdb|3FVX|B Chain B, Human Kynurenine Aminotransferase I In Complex With Tris
Length = 422
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 49 YNDKGNIVSWRGDPILLDKHIQEVENNTVIELPNHAHCSTLETYGNQALFY 99
++ G V W P + KH++ V N+V P + + E++ + L +
Sbjct: 249 FSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLF 299
>pdb|4G4F|A Chain A, Crystal Structure Of Gitrl From Bushbaby
Length = 126
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 1 MTGRKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGL 44
MT RKPPC + P+G I+ D ++ Q A + Y G+
Sbjct: 21 MTSRKPPCVNSLPEGKLKIL----QDGLYLIYGQVAPSTAYKGV 60
>pdb|1QMH|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMH|B Chain B, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
Length = 347
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 47 LQYNDKGNIVSWRGDPIL--LDKHIQEVENNTV 77
LQ ++GNIV RG+ +L + +H+ E E T+
Sbjct: 181 LQLGERGNIVQMRGEVLLAGVPRHVAEREIATL 213
>pdb|3TUT|A Chain A, Crystal Structure Of Rtca.Atp Binary Complex
pdb|3TUX|A Chain A, Crystal Structure Of Rtca.Atp.Mn Ternary Complex
pdb|3TV1|A Chain A, Crystal Structure Of Rtca.Amp Product Complex
pdb|3TV1|B Chain B, Crystal Structure Of Rtca.Amp Product Complex
pdb|3TW3|A Chain A, Crystal Structure Of Rtca.Atp.Co Ternary Complex
Length = 358
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 47 LQYNDKGNIVSWRGDPIL--LDKHIQEVENNTV 77
LQ ++GNIV RG+ +L + +H+ E E T+
Sbjct: 200 LQLGERGNIVQMRGEVLLAGVPRHVAEREIATL 232
>pdb|3KGD|A Chain A, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|B Chain B, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|C Chain C, Crystal Structure Of E. Coli Rna 3' Cyclase
pdb|3KGD|D Chain D, Crystal Structure Of E. Coli Rna 3' Cyclase
Length = 358
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 47 LQYNDKGNIVSWRGDPIL--LDKHIQEVENNTV 77
LQ ++GNIV RG+ +L + +H+ E E T+
Sbjct: 200 LQLGERGNIVQMRGEVLLAGVPRHVAEREIATL 232
>pdb|1QMI|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|B Chain B, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|C Chain C, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|D Chain D, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
Length = 347
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 47 LQYNDKGNIVSWRGDPIL--LDKHIQEVENNTV 77
LQ ++GNIV RG+ +L + +H+ E E T+
Sbjct: 181 LQLGERGNIVQXRGEVLLAGVPRHVAEREIATL 213
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 59 RGDPILLDKHIQEVENNTVIELPNHAHCSTLETY 92
+G LL+ Q + N +IEL H H L+ Y
Sbjct: 28 KGXKELLENEYQFIPNYYIIELDKHGHGEELQEY 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,478,720
Number of Sequences: 62578
Number of extensions: 130506
Number of successful extensions: 261
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 16
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)