Query psy11244
Match_columns 102
No_of_seqs 115 out of 605
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 21:48:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01530 nadN NAD pyrophospha 99.3 1.1E-11 2.3E-16 100.5 6.3 89 12-101 230-356 (550)
2 cd07409 MPP_CD73_N CD73 ecto-5 99.0 7E-10 1.5E-14 83.0 7.4 56 9-65 226-281 (281)
3 cd08162 MPP_PhoA_N Synechococc 99.0 1.2E-09 2.6E-14 83.3 6.7 50 10-60 255-304 (313)
4 PRK09558 ushA bifunctional UDP 98.7 1.9E-08 4.1E-13 81.4 4.0 72 29-101 283-374 (551)
5 KOG4419|consensus 98.6 2.4E-08 5.2E-13 81.5 3.9 92 9-101 278-371 (602)
6 PRK11907 bifunctional 2',3'-cy 98.6 4.6E-08 9.9E-13 82.8 4.1 86 14-101 364-457 (814)
7 PRK09419 bifunctional 2',3'-cy 98.5 8E-08 1.7E-12 83.7 4.0 73 29-101 889-965 (1163)
8 COG0737 UshA 5'-nucleotidase/2 98.5 7.8E-08 1.7E-12 77.3 3.0 75 27-101 257-335 (517)
9 TIGR01390 CycNucDiestase 2',3' 98.4 2.8E-07 6.2E-12 76.0 3.5 75 27-101 259-344 (626)
10 PRK09419 bifunctional 2',3'-cy 98.3 4.5E-07 9.7E-12 79.1 3.0 73 29-101 301-379 (1163)
11 PRK09420 cpdB bifunctional 2', 98.3 7.9E-07 1.7E-11 73.8 4.1 74 28-101 283-367 (649)
12 cd07406 MPP_CG11883_N Drosophi 98.2 4.9E-06 1.1E-10 61.5 6.2 44 29-72 214-257 (257)
13 PRK09418 bifunctional 2',3'-cy 98.1 3.5E-06 7.6E-11 71.3 3.6 73 29-101 296-380 (780)
14 cd07405 MPP_UshA_N Escherichia 97.9 2E-05 4.4E-10 59.2 4.7 38 29-67 247-284 (285)
15 cd07412 MPP_YhcR_N Bacillus su 97.4 0.00026 5.6E-09 53.2 4.8 38 27-64 249-287 (288)
16 cd07411 MPP_SoxB_N Thermus the 97.2 0.00066 1.4E-08 50.2 4.8 34 29-63 229-262 (264)
17 cd07408 MPP_SA0022_N Staphyloc 97.0 0.00082 1.8E-08 49.5 3.8 31 28-58 222-253 (257)
18 cd07407 MPP_YHR202W_N Saccharo 96.5 0.0019 4.2E-08 48.7 2.3 28 29-56 239-266 (282)
19 cd00845 MPP_UshA_N_like Escher 96.3 0.0063 1.4E-07 44.1 4.3 33 28-60 214-247 (252)
20 cd07410 MPP_CpdB_N Escherichia 96.2 0.0078 1.7E-07 44.6 4.1 25 28-52 237-261 (277)
21 TIGR02888 spore_YlmC_YmxH spor 63.4 8.6 0.00019 23.6 2.5 21 37-57 14-38 (76)
22 PF11720 Inhibitor_I78: Peptid 46.0 24 0.00053 20.4 2.4 17 42-58 41-57 (60)
23 PF09292 Neil1-DNA_bind: Endon 41.3 20 0.00044 19.3 1.4 16 48-63 20-35 (39)
24 PF04355 SmpA_OmlA: SmpA / Oml 38.6 39 0.00085 19.7 2.6 17 42-58 54-70 (71)
25 PRK11548 outer membrane biogen 36.6 38 0.00083 22.0 2.5 19 43-61 89-107 (113)
26 PF12073 DUF3553: Protein of u 36.4 61 0.0013 18.7 3.0 25 40-65 23-47 (52)
27 PHA02551 19 tail tube protein; 35.7 93 0.002 21.9 4.4 38 21-59 115-154 (163)
28 PF13368 Toprim_C_rpt: Topoiso 31.8 42 0.00092 19.4 1.9 18 24-43 2-19 (61)
29 PF07504 FTP: Fungalysin/Therm 28.4 48 0.001 18.1 1.7 22 41-62 29-50 (51)
30 PF11396 DUF2874: Protein of u 27.0 58 0.0013 18.1 1.9 13 44-56 49-61 (61)
31 PRK11251 DNA-binding transcrip 23.1 92 0.002 20.4 2.5 14 44-57 79-92 (109)
32 PF09695 YtfJ_HI0045: Bacteria 21.0 2.5E+02 0.0054 19.8 4.4 41 14-59 101-141 (160)
33 PF02381 MraZ: MraZ protein; 21.0 53 0.0011 19.2 0.9 17 41-57 2-18 (72)
34 PF04601 DUF569: Protein of un 20.9 76 0.0017 21.9 1.8 21 29-50 52-72 (142)
35 PF03738 GSP_synth: Glutathion 20.4 30 0.00066 21.6 -0.2 31 34-64 26-56 (97)
No 1
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=99.25 E-value=1.1e-11 Score=100.49 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=70.6
Q ss_pred CCCCCccEEEecCCCCcEEEEEecccccceeeeEEEEEcCCCCEEEecCeeEEecC------------------------
Q psy11244 12 KPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDK------------------------ 67 (102)
Q Consensus 12 ~~~g~yP~vv~~~~dG~~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~l~~------------------------ 67 (102)
...++||+++.+ .+|++|+|+|||+||+|||+++|+||++|.+..|.+.+..+..
T Consensus 230 ~~~~~~p~~~~~-~~g~~~~ivqag~~g~~lg~l~l~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (550)
T TIGR01530 230 PVIGEYPLEFKN-PAGDPVFVMEAWAYGACLGDLGVKFDPEGIASIARGIPHFLLHSHKLQKKGADGKNTELEEAEREAA 308 (550)
T ss_pred CcCCCCCEEeeC-CCCCEEEEEeCChHhheeeeEEEEECCCCCEEEecCceeeeccccceeecccccccccccchhhhhH
Confidence 346899999999 9999999999999999999999999999998888775543310
Q ss_pred -----------CcccCcccccccc--cccccccccCeeccceE-eccC
Q psy11244 68 -----------HIQEVENNTVIEL--PNHAHCSTLETYGNQAL-FYDR 101 (102)
Q Consensus 68 -----------~i~~Dp~~~~~v~--~~~~~~~~~~~ig~~~v-~ldg 101 (102)
.+.+||++.++++ ....++.+.++||.+.. .|++
T Consensus 309 ~~~~~~~~~~~~~~~D~~v~~~v~~~~~~~~~~~~~~Ig~~~~~~l~~ 356 (550)
T TIGR01530 309 LDALKMMKEIIFADEDAKIDMLIEEFKKEKDALAAEAIGVITGAAMPG 356 (550)
T ss_pred HhhhhcccccccCCCCHHHHHHHHHHHHHHHHHhCeeEEeccccccCC
Confidence 1367888888885 35666778889998765 3543
No 2
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=99.05 E-value=7e-10 Score=83.00 Aligned_cols=56 Identities=55% Similarity=1.096 Sum_probs=50.2
Q ss_pred CCCCCCCCccEEEecCCCCcEEEEEecccccceeeeEEEEEcCCCCEEEecCeeEEe
Q psy11244 9 PHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILL 65 (102)
Q Consensus 9 ~~~~~~g~yP~vv~~~~dG~~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~l 65 (102)
+.+...++||.++++ ++|+.|+|+|||+||+|||+++|+|+++|+++.|++.++++
T Consensus 226 ~~~~~~~~~p~~~~~-~~~~~~~ivq~g~~g~~~g~i~l~~~~~~~~~~~~~~~~~~ 281 (281)
T cd07409 226 SGEKPVGPYPTVVKN-ADGRKVLVVQAYAYGKYLGYLDVTFDDNGNVTSWEGNPILL 281 (281)
T ss_pred cCcccCCCCCEEeeC-CCCCEEEEEeCChHHheEEEEEEEEcCCCCEEEeeCEEEeC
Confidence 445667899999999 99999999999999999999999999889999999877653
No 3
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=98.99 E-value=1.2e-09 Score=83.34 Aligned_cols=50 Identities=28% Similarity=0.595 Sum_probs=45.7
Q ss_pred CCCCCCCccEEEecCCCCcEEEEEecccccceeeeEEEEEcCCCCEEEecC
Q psy11244 10 HDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRG 60 (102)
Q Consensus 10 ~~~~~g~yP~vv~~~~dG~~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g 60 (102)
++...++||+++++ ++|+.|+|+|+|+||+|||+|+|+||++|+++.|+-
T Consensus 255 ~~~~~~~yp~~~~~-~~g~~~~ivq~g~~~~~vG~l~l~~d~~g~i~~~~~ 304 (313)
T cd08162 255 GDTAAGDYPLVTTD-ADGNPVLIVNTDGNYKYVGRLVVDFDANGVIIPISD 304 (313)
T ss_pred CCCcCCCCCEEEeC-CCCCEEEEEEcChhhheeeEEEEEECCCCCEEEccc
Confidence 45568999999999 999999999999999999999999999999998843
No 4
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=98.66 E-value=1.9e-08 Score=81.45 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=58.7
Q ss_pred EEEEEecccccceeeeEEEEEcCCCCEEEecCeeEEe------------------cCCcccCccccccccc--ccccccc
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILL------------------DKHIQEVENNTVIELP--NHAHCST 88 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~l------------------~~~i~~Dp~~~~~v~~--~~~~~~~ 88 (102)
.|+|+|||+||+|||+++++|+ +|++..+.+..+.+ +..+++|+++++++++ ....+.+
T Consensus 283 ~~~ivqag~~g~~vg~l~l~~~-~g~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~~v~~~~~~~~~~~ 361 (551)
T PRK09558 283 GTWIVQAHEWGKYVGRADFEFR-NGELKLVSYQLIPVNLKKKVKWEDGKSERVLYTEEIAEDPQVLELLTPFQEKGQAQL 361 (551)
T ss_pred CEEEEecChhhheeEEEEEEEE-CCeEEEEeeeeeecccccccccccccceeeeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999999998 68887777665554 2347889999988864 4556678
Q ss_pred cCeeccceEeccC
Q psy11244 89 LETYGNQALFYDR 101 (102)
Q Consensus 89 ~~~ig~~~v~ldg 101 (102)
.++||.+.+.|++
T Consensus 362 ~~vIg~~~~~l~~ 374 (551)
T PRK09558 362 DVKIGETNGKLEG 374 (551)
T ss_pred CcceEEccccccc
Confidence 9999999998874
No 5
>KOG4419|consensus
Probab=98.64 E-value=2.4e-08 Score=81.46 Aligned_cols=92 Identities=24% Similarity=0.325 Sum_probs=83.4
Q ss_pred CCCCCCCCccEEEecCCCCcEEEEEecccccceeeeEEEEEcCCCCEEEecCeeEEecCCcccCccccccccc--ccccc
Q psy11244 9 PHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDKHIQEVENNTVIELP--NHAHC 86 (102)
Q Consensus 9 ~~~~~~g~yP~vv~~~~dG~~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~l~~~i~~Dp~~~~~v~~--~~~~~ 86 (102)
+..-..|.||+.|.- .+++++.|+|+..+.+|+|.+.++||..|+.....+.|+.+++++.+||+++.-+.+ ...+.
T Consensus 278 s~~l~~GrypetV~~-~s~~~v~v~~~~a~~~y~g~i~~e~d~~~~~~~~~~~p~~~tr~~~d~~~fk~hl~k~~~~~d~ 356 (602)
T KOG4419|consen 278 SVELESGRYPETVGW-LSINKVGVVQANATRKYLGPITIEFDQSGNNLPSPGSPILFTRSYIDDQNFKFHLSKYRDSFDT 356 (602)
T ss_pred ccccccCCCcceeee-eeccCcceeeeeeeeeeeeeEEeehhhcccccCCCCCceEeeeccCCcHHHHHHHHHhhhhccC
Confidence 455568999999999 999999999999999999999999999999999999999999999999999888854 56667
Q ss_pred cccCeeccceEeccC
Q psy11244 87 STLETYGNQALFYDR 101 (102)
Q Consensus 87 ~~~~~ig~~~v~ldg 101 (102)
...++.|.+.|+|+|
T Consensus 357 ~~~~~lGktiv~L~~ 371 (602)
T KOG4419|consen 357 PESTELGKTIVELRG 371 (602)
T ss_pred ccceeeeeEEEEecc
Confidence 788899999999987
No 6
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.58 E-value=4.6e-08 Score=82.81 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=65.3
Q ss_pred CCCccEEEecCCCC--cEEEEEecccccceeeeEEEEEcC-CC--CEEEecCeeEEe-cCCcccCccccccccc--cccc
Q psy11244 14 KGPYPIVVTSSVDN--RQVLVVQAAAYSRYLGLIHLQYND-KG--NIVSWRGDPILL-DKHIQEVENNTVIELP--NHAH 85 (102)
Q Consensus 14 ~g~yP~vv~~~~dG--~~v~Ivqag~~g~yLG~ldv~fd~-~G--~v~~~~g~pi~l-~~~i~~Dp~~~~~v~~--~~~~ 85 (102)
.++||.+ .. ..| +.++|||+|+||++||+|||+|+. +| +++.+.+..+.+ ...+.+|+++.+++.+ ....
T Consensus 364 ~~~~p~v-d~-~~g~ingvpvVqaG~~G~~LG~IdL~l~~~~g~~~V~~~~~~~~~i~~~~~~~D~~i~~~l~~~h~~t~ 441 (814)
T PRK11907 364 YAKYSGV-DD-INGKINGTPVTMAGKYGDHLGIIDLNLSYTDGKWTVTSSKAKIRKIDTKSTVADGRIIDLAKEAHNGTI 441 (814)
T ss_pred ccccCcc-cc-cCCcCCCEEEEecChhhceEEEEEEEEEccCCcEEEEEeeeeEEEccCCCCCCCHHHHHHHHHHHHHHH
Confidence 5678874 44 555 369999999999999999999973 34 466777665555 3456789999988854 4556
Q ss_pred ccccCeeccceEeccC
Q psy11244 86 CSTLETYGNQALFYDR 101 (102)
Q Consensus 86 ~~~~~~ig~~~v~ldg 101 (102)
+.+.++||.+.+.|++
T Consensus 442 ~~~~~~IG~t~~~L~s 457 (814)
T PRK11907 442 NYVRQQVGETTAPITS 457 (814)
T ss_pred HHhccCcEEecccccc
Confidence 6788999999998874
No 7
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.52 E-value=8e-08 Score=83.70 Aligned_cols=73 Identities=23% Similarity=0.226 Sum_probs=61.2
Q ss_pred EEEEEecccccceeeeEEEEEcCCCCEEEecCe--eEEecCCcccCccccccccc--ccccccccCeeccceEeccC
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGD--PILLDKHIQEVENNTVIELP--NHAHCSTLETYGNQALFYDR 101 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~--pi~l~~~i~~Dp~~~~~v~~--~~~~~~~~~~ig~~~v~ldg 101 (102)
.|+|+|+|+||+|||+++|+||.+|+++.+... .+.++..+++|+++.+++++ ....+.+.++||.+.+.|++
T Consensus 889 ~~~ivqag~~g~~vg~i~l~~d~~g~~~~~~~~~~~~~~~~~~~~D~~v~~~v~~~~~~~~~~l~~~Ig~~~~~L~~ 965 (1163)
T PRK09419 889 GTPVVQAYKYGRALGRVDVKFDKKGVVVVKTSRIDLSKIDDDLPEDPEMKEILDKYEKELAPIKNEKVGYTSVDLDG 965 (1163)
T ss_pred CEEEEeCChhHcEEEEEEEEEECCCcEEEEeccceeeecccccCCCHHHHHHHHHHHHHHHHHhccceeeeeccccC
Confidence 499999999999999999999988998877664 34556778999999998864 45556788999999999865
No 8
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.49 E-value=7.8e-08 Score=77.25 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=57.3
Q ss_pred CcEEEEEecccccceeeeEEEEEcCCCCEEEecCeeEEe--cCCcccCcccccccc--cccccccccCeeccceEeccC
Q psy11244 27 NRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILL--DKHIQEVENNTVIEL--PNHAHCSTLETYGNQALFYDR 101 (102)
Q Consensus 27 G~~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~l--~~~i~~Dp~~~~~v~--~~~~~~~~~~~ig~~~v~ldg 101 (102)
.++|+|+|||+||+|||+++++||..+++......+..+ .....+||++.+.+. ..+..+.+.++||.+...|.+
T Consensus 257 ~~~t~ivqag~~gk~vG~~di~~d~~~~~~~~~~~~~~i~~~~~~~~d~~~~~~i~~~~~~~~~~~~~~ig~~~~~~~~ 335 (517)
T COG0737 257 VNGTPIVQAGEYGKYVGVLDITFDGEGKVTDIKAVARPITDVTAKKEDPAVEALIEYLQEATEDFLSEVIGTTPGQLEG 335 (517)
T ss_pred cCCEEEEccChhhCceeEEEEEEcCceeEEeeeccccceeecccCCCCHHHHHHHHHHHHHHHHHhccccccccCcccc
Confidence 457999999999999999999998667765666654433 223337999999985 466667788899998887754
No 9
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=98.37 E-value=2.8e-07 Score=76.04 Aligned_cols=75 Identities=19% Similarity=0.109 Sum_probs=56.4
Q ss_pred CcEEEEEecccccceeeeEEEEEcCC-CC--EEEec--CeeEEecC----CcccCccccccccc--ccccccccCeeccc
Q psy11244 27 NRQVLVVQAAAYSRYLGLIHLQYNDK-GN--IVSWR--GDPILLDK----HIQEVENNTVIELP--NHAHCSTLETYGNQ 95 (102)
Q Consensus 27 G~~v~Ivqag~~g~yLG~ldv~fd~~-G~--v~~~~--g~pi~l~~----~i~~Dp~~~~~v~~--~~~~~~~~~~ig~~ 95 (102)
.+.++|||+|+||++||.++|+|+.+ |+ ++.+. ..|+..+. .+++|+++.+++++ .+..+.+.++||.+
T Consensus 259 i~g~~vvqaG~~G~~lG~idL~l~~~~g~~~v~~~~~~~~pi~~~~~~~~~v~~D~~v~~~v~~~~~~~~~~~~~~Ig~~ 338 (626)
T TIGR01390 259 INGVPAVMAGYWGNHLGVVDLQLNYDSGKWTVTSAKAELRPIYDKANKKSLVTPDPAIVRALKADHEGTRRYVSQPIGKA 338 (626)
T ss_pred cCCEEEEeCChhhcEEEEEEEEEEecCCeEEEEeeEEEEEEccccccccccCCCCHHHHHHHHHHHHHHHHHhcceeEEe
Confidence 34699999999999999999999955 33 44443 34554432 36789999998854 56667789999999
Q ss_pred eEeccC
Q psy11244 96 ALFYDR 101 (102)
Q Consensus 96 ~v~ldg 101 (102)
...|++
T Consensus 339 ~~~l~~ 344 (626)
T TIGR01390 339 ADNMYS 344 (626)
T ss_pred cCcccc
Confidence 888753
No 10
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.28 E-value=4.5e-07 Score=79.09 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=57.8
Q ss_pred EEEEEecccccceeeeEEEEEcCCC---CEEEecCeeEEe-cCCcccCccccccccc--ccccccccCeeccceEeccC
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDKG---NIVSWRGDPILL-DKHIQEVENNTVIELP--NHAHCSTLETYGNQALFYDR 101 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~G---~v~~~~g~pi~l-~~~i~~Dp~~~~~v~~--~~~~~~~~~~ig~~~v~ldg 101 (102)
.|+|+|+|+||++||+++|+|+.++ ++..+.+..+.+ ...+++||++.+++.+ ....+.+.++||.+.+.|++
T Consensus 301 g~~ivqag~~g~~lg~idl~~~~~~~~~~v~~~~~~~~~i~~~~~~~d~~i~~~v~~~~~~~~~~~~~~Ig~~~~~l~~ 379 (1163)
T PRK09419 301 GIPVVMPKSWGKYLGKIDLTLEKDGGKWKVVDKKSSLESISGKVVSRDETVVDALKDTHEATIAYVRAPVGKTEDDIKS 379 (1163)
T ss_pred CEEEEccChhhcEEEEEEEEEEEcCCEEEEEeeEEEEEeeccccCCCCHHHHHHHHHHHHHHHHHHhCcccccCCcccC
Confidence 5999999999999999999999654 345555555434 3468999999998864 56667789999999988875
No 11
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.27 E-value=7.9e-07 Score=73.77 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=56.4
Q ss_pred cEEEEEecccccceeeeEEEEEcCCCC---EEEe--cCeeEEec----CCcccCccccccccc--ccccccccCeeccce
Q psy11244 28 RQVLVVQAAAYSRYLGLIHLQYNDKGN---IVSW--RGDPILLD----KHIQEVENNTVIELP--NHAHCSTLETYGNQA 96 (102)
Q Consensus 28 ~~v~Ivqag~~g~yLG~ldv~fd~~G~---v~~~--~g~pi~l~----~~i~~Dp~~~~~v~~--~~~~~~~~~~ig~~~ 96 (102)
+.++|||+|+||++||.++|+|+.++. ++.. +..|+... ..+++||++++++.+ +...+.+.++||.+.
T Consensus 283 ~g~pvv~aG~~G~~lG~IdL~l~~~~~~w~v~~~~~~~~pi~~~~~~~~~~~~D~~v~~~v~~~~~~~~~~~~~~Ig~~~ 362 (649)
T PRK09420 283 NGVPAVMPGRWGDHLGVVDLVLENDSGKWQVTDAKAEARPIYDKANKKSLAAEDPKLVAALKADHQATRAFVSQPIGKAA 362 (649)
T ss_pred CCEEEEeCChhhcEEEEEEEEEEcCCCcEEEEeeEEEEEEccccccccccCCCCHHHHHHHHHHHHHHHHHhccccEEcc
Confidence 469999999999999999999996543 4443 33455442 247889999998853 566677899999999
Q ss_pred EeccC
Q psy11244 97 LFYDR 101 (102)
Q Consensus 97 v~ldg 101 (102)
+.|+.
T Consensus 363 ~~l~~ 367 (649)
T PRK09420 363 DNMYS 367 (649)
T ss_pred ccccc
Confidence 88764
No 12
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.18 E-value=4.9e-06 Score=61.49 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=40.6
Q ss_pred EEEEEecccccceeeeEEEEEcCCCCEEEecCeeEEecCCcccC
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDKHIQEV 72 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~l~~~i~~D 72 (102)
.++|+|+|++|+|||+++++||..+++..+++..+.++++|+||
T Consensus 214 ~t~vv~~g~~g~~vg~l~l~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (257)
T cd07406 214 GTPIVKSGSDFRTVYIITLTYDTKTRKVQVNSRLVPITSSIPED 257 (257)
T ss_pred CEEEEeCCcCcceEEEEEEEEECCCCEEEEEEEEEEcccccCCC
Confidence 49999999999999999999998888777888999999999887
No 13
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.05 E-value=3.5e-06 Score=71.32 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=52.2
Q ss_pred EEEEEecccccceeeeEEEEEcCC-CC--EEEecCeeEE--e-c----CCcccCccccccccc--ccccccccCeeccce
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDK-GN--IVSWRGDPIL--L-D----KHIQEVENNTVIELP--NHAHCSTLETYGNQA 96 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~-G~--v~~~~g~pi~--l-~----~~i~~Dp~~~~~v~~--~~~~~~~~~~ig~~~ 96 (102)
.++|||+|+||+|||+|+|+|+.. |+ +..+.+.+.+ + + ..+++|+++.+.+.. .+..+.+.++||.+.
T Consensus 296 gv~vvqaG~~G~~LG~IdL~ld~~~g~w~v~~~~~~~~l~~i~~~~~~~~v~~D~~i~~~l~~~~~~t~~~l~~~IG~t~ 375 (780)
T PRK09418 296 GVPVVMPGVFGSNLGIIDMQLKKVNGKWEVQKEQSKPQLRPIADSKGNPLVQSDQNLVNEIKDDHQATIDYVNTAVGKTT 375 (780)
T ss_pred CEEEEEcChhhcEEEEEEEEEECCCCeEEEEeeecceEEeeccccccccCCCCCHHHHHHHHHHHHHHHHHhCceEEEec
Confidence 499999999999999999999955 43 3334433322 2 1 136778888777743 445566889999999
Q ss_pred EeccC
Q psy11244 97 LFYDR 101 (102)
Q Consensus 97 v~ldg 101 (102)
+.|+.
T Consensus 376 ~~L~s 380 (780)
T PRK09418 376 APINS 380 (780)
T ss_pred ccccc
Confidence 88863
No 14
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.88 E-value=2e-05 Score=59.19 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=33.5
Q ss_pred EEEEEecccccceeeeEEEEEcCCCCEEEecCeeEEecC
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDK 67 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~l~~ 67 (102)
.|+|+|+|+||+|||+++++|+ +|++..++...|.++.
T Consensus 247 ~~~v~q~g~~g~~vg~i~l~~~-~g~~~~~~~~li~~~~ 284 (285)
T cd07405 247 GVWIVQAHEWGKYVGRADFEFR-NGKLKLVKYQLIPVNL 284 (285)
T ss_pred CEEEEeCChHHceeEEEEEEEE-CCeEEEeeeEEEeccC
Confidence 4999999999999999999997 6898888888777653
No 15
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=97.42 E-value=0.00026 Score=53.23 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=31.0
Q ss_pred CcEEEEEecccccceeeeEEEEEcCC-CCEEEecCeeEE
Q psy11244 27 NRQVLVVQAAAYSRYLGLIHLQYNDK-GNIVSWRGDPIL 64 (102)
Q Consensus 27 G~~v~Ivqag~~g~yLG~ldv~fd~~-G~v~~~~g~pi~ 64 (102)
.+.++|+|+|+||++||+++|+||.+ ++++.+++..+.
T Consensus 249 ~~~~~v~q~g~~g~~vg~i~l~~~~~~~~v~~~~~~~~~ 287 (288)
T cd07412 249 GNPRLVTQAGSYGKAVADVDLTIDPATKDVVNKSAENVT 287 (288)
T ss_pred cCCEEEEecChhhceeEEEEEEEECCCCeEEeeeeEEEe
Confidence 34699999999999999999999966 467666665554
No 16
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=97.19 E-value=0.00066 Score=50.20 Aligned_cols=34 Identities=35% Similarity=0.610 Sum_probs=29.1
Q ss_pred EEEEEecccccceeeeEEEEEcCCCCEEEecCeeE
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPI 63 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi 63 (102)
.|+|+|+|++|++||+++++|+ +|+|..+++..+
T Consensus 229 ~t~v~~~g~~~~~vg~i~l~~~-~~~i~~~~~~~~ 262 (264)
T cd07411 229 GTLVVEAGSHGKFLGRLDLDVR-DGKIVDYRYELI 262 (264)
T ss_pred CEEEEEcCccccEEEEEEEEEE-CCEEEEEEEEEE
Confidence 5999999999999999999998 588877665543
No 17
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=97.02 E-value=0.00082 Score=49.53 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=26.3
Q ss_pred cEEEEEecccccceeeeEEEEEcCC-CCEEEe
Q psy11244 28 RQVLVVQAAAYSRYLGLIHLQYNDK-GNIVSW 58 (102)
Q Consensus 28 ~~v~Ivqag~~g~yLG~ldv~fd~~-G~v~~~ 58 (102)
+.++|+|+|+||+|||+++++|+.. ++++..
T Consensus 222 ~~~~ivq~g~~g~~vg~l~l~~~~~~~~~~~~ 253 (257)
T cd07408 222 NNVLLTQTGAYLANIGEVTLVFDTTTGTIKLI 253 (257)
T ss_pred CCeEEEcCChHHceEEEEEEEEECCCceEEEe
Confidence 4699999999999999999999965 556544
No 18
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=96.46 E-value=0.0019 Score=48.74 Aligned_cols=28 Identities=7% Similarity=0.186 Sum_probs=24.4
Q ss_pred EEEEEecccccceeeeEEEEEcCCCCEE
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDKGNIV 56 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~G~v~ 56 (102)
.|+|+|+|+||+|||+++++|++.+..+
T Consensus 239 ~~~ivq~G~~g~~lg~v~l~~~~~~~~~ 266 (282)
T cd07407 239 SSTGLESGRYLETVGWVSFDGTKASDTA 266 (282)
T ss_pred cEEEEeccchhhceEEEEEccccccccc
Confidence 4999999999999999999999665443
No 19
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=96.32 E-value=0.0063 Score=44.13 Aligned_cols=33 Identities=36% Similarity=0.690 Sum_probs=26.8
Q ss_pred cEEEEEecccccceeeeEEEEEcCCC-CEEEecC
Q psy11244 28 RQVLVVQAAAYSRYLGLIHLQYNDKG-NIVSWRG 60 (102)
Q Consensus 28 ~~v~Ivqag~~g~yLG~ldv~fd~~G-~v~~~~g 60 (102)
+.++|+|+|++|++||+++++|+..+ ++..+++
T Consensus 214 ~~~~v~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 247 (252)
T cd00845 214 NGTLIVQAGKYGKYVGEIDLELDDDTKKVVTVSG 247 (252)
T ss_pred CCEEEEeCChhHceEEEEEEEEECCCCeEeeeee
Confidence 35999999999999999999999765 3444444
No 20
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=96.15 E-value=0.0078 Score=44.61 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.9
Q ss_pred cEEEEEecccccceeeeEEEEEcCC
Q psy11244 28 RQVLVVQAAAYSRYLGLIHLQYNDK 52 (102)
Q Consensus 28 ~~v~Ivqag~~g~yLG~ldv~fd~~ 52 (102)
+.++|+|+|+||+|||+++|+|+.+
T Consensus 237 ~~~~v~q~g~~g~~vg~l~l~~~~~ 261 (277)
T cd07410 237 NGVPVVQPGNWGSHLGVIDLTLEKD 261 (277)
T ss_pred CCEEEEcCChhhCEEEEEEEEEEEc
Confidence 4599999999999999999999954
No 21
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=63.37 E-value=8.6 Score=23.65 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=16.1
Q ss_pred cccceeeeE---EEEEc-CCCCEEE
Q psy11244 37 AYSRYLGLI---HLQYN-DKGNIVS 57 (102)
Q Consensus 37 ~~g~yLG~l---dv~fd-~~G~v~~ 57 (102)
+.|+.||.+ |+.|| ..|++..
T Consensus 14 ~~G~~lG~v~~~Dl~iD~~~G~I~a 38 (76)
T TIGR02888 14 NDGERLGVIGNIDLEIDEEDGRILS 38 (76)
T ss_pred CCCcEeeccccceEEEECCCCEEEE
Confidence 456778888 99999 5788864
No 22
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=46.01 E-value=24 Score=20.40 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=13.9
Q ss_pred eeeEEEEEcCCCCEEEe
Q psy11244 42 LGLIHLQYNDKGNIVSW 58 (102)
Q Consensus 42 LG~ldv~fd~~G~v~~~ 58 (102)
-.||+|.+|++|+|+..
T Consensus 41 ~dRLnv~~D~~g~I~~v 57 (60)
T PF11720_consen 41 PDRLNVEVDDDGVITRV 57 (60)
T ss_pred CCcEEEEECCCCcEEEE
Confidence 46899999999988753
No 23
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=41.33 E-value=20 Score=19.35 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=9.2
Q ss_pred EEcCCCCEEEecCeeE
Q psy11244 48 QYNDKGNIVSWRGDPI 63 (102)
Q Consensus 48 ~fd~~G~v~~~~g~pi 63 (102)
--|.+|+.+||+|.|=
T Consensus 20 l~D~~gRTiWFqGdPG 35 (39)
T PF09292_consen 20 LRDRNGRTIWFQGDPG 35 (39)
T ss_dssp EE-TTS-EEEESS---
T ss_pred ccccCCCEEEeeCCCC
Confidence 3478899999999763
No 24
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=38.63 E-value=39 Score=19.66 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=13.7
Q ss_pred eeeEEEEEcCCCCEEEe
Q psy11244 42 LGLIHLQYNDKGNIVSW 58 (102)
Q Consensus 42 LG~ldv~fd~~G~v~~~ 58 (102)
--.+.|.||++|.+..+
T Consensus 54 ~~~l~V~Fd~~~~v~~~ 70 (71)
T PF04355_consen 54 QRQLKVYFDDDGVVKSI 70 (71)
T ss_dssp EEEEEEEECTTSBEEEE
T ss_pred EEEEEEEEcCCCEEEEe
Confidence 55889999988888764
No 25
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=36.60 E-value=38 Score=21.98 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=15.4
Q ss_pred eeEEEEEcCCCCEEEecCe
Q psy11244 43 GLIHLQYNDKGNIVSWRGD 61 (102)
Q Consensus 43 G~ldv~fd~~G~v~~~~g~ 61 (102)
=.+.|.||++|++....+.
T Consensus 89 ~~l~V~Fd~~g~V~~i~~~ 107 (113)
T PRK11548 89 QTLTLTFNSSGVLTNIDNK 107 (113)
T ss_pred EEEEEEECCCCeEEeccCC
Confidence 4688999989999877764
No 26
>PF12073 DUF3553: Protein of unknown function (DUF3553); InterPro: IPR021938 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 60 amino acids in length. This protein has two conserved sequence motifs: GQVQS and TVNF.
Probab=36.42 E-value=61 Score=18.67 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=17.0
Q ss_pred ceeeeEEEEEcCCCCEEEecCeeEEe
Q psy11244 40 RYLGLIHLQYNDKGNIVSWRGDPILL 65 (102)
Q Consensus 40 ~yLG~ldv~fd~~G~v~~~~g~pi~l 65 (102)
..=|++.|.|...|+++ .++..+.|
T Consensus 23 ~i~~rvTVnF~~aGK~v-I~~~~v~L 47 (52)
T PF12073_consen 23 NIGGRVTVNFEHAGKKV-IDGSRVAL 47 (52)
T ss_pred ecCCeEEEeeccCCeEE-EeccEEEE
Confidence 34578999999888886 34444443
No 27
>PHA02551 19 tail tube protein; Provisional
Probab=35.67 E-value=93 Score=21.95 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=27.7
Q ss_pred EecCCCCc-EEEEEec-ccccceeeeEEEEEcCCCCEEEec
Q psy11244 21 VTSSVDNR-QVLVVQA-AAYSRYLGLIHLQYNDKGNIVSWR 59 (102)
Q Consensus 21 v~~~~dG~-~v~Ivqa-g~~g~yLG~ldv~fd~~G~v~~~~ 59 (102)
+.+ .+|+ .|.-.+- |+|=.-||.++++++.+..+..|+
T Consensus 115 ~ld-rn~~~i~~t~~~~g~wPs~VgeveLdy~~nn~i~tF~ 154 (163)
T PHA02551 115 QLD-RDGKTVTREYTIYGLFPTNVGEIDLDWDSNNEIETFE 154 (163)
T ss_pred Eec-cCCCceEEEEEEeceecccccceeecccCCCcEEEEE
Confidence 445 6676 4444443 888899999999999887776654
No 28
>PF13368 Toprim_C_rpt: Topoisomerase C-terminal repeat
Probab=31.78 E-value=42 Score=19.39 Aligned_cols=18 Identities=11% Similarity=0.420 Sum_probs=13.4
Q ss_pred CCCCcEEEEEecccccceee
Q psy11244 24 SVDNRQVLVVQAAAYSRYLG 43 (102)
Q Consensus 24 ~~dG~~v~Ivqag~~g~yLG 43 (102)
|.+|+.+ |..|.||-||-
T Consensus 2 Pe~g~~i--v~~GRfGPYv~ 19 (61)
T PF13368_consen 2 PESGKPI--VKNGRFGPYVK 19 (61)
T ss_pred CCCCCEE--EeECCCCceEE
Confidence 4566555 49999999983
No 29
>PF07504 FTP: Fungalysin/Thermolysin Propeptide Motif; InterPro: IPR011096 The FTP domain is found in the propeptide region of bacterial and fungal metallopeptidases belonging to MEROPS peptidase families M4 and M36 respectively. In bacteria the FTP domain is N-terminal to this entry, the PepSY domain; in fungi the M36 peptidases do not contain the PepSY domain. Propeptide swapping experiments have shown that the propeptides of the M4 and M36 families are not functionally interchangeable []. The function of the propeptide in M36 peptidases has not been described, but it is likely, as in other related peptidases, to have targeting, chaperone activity and to inhibit peptidase activity, so as to prevent premature activation [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding; PDB: 3NQY_A 3NQZ_A.
Probab=28.36 E-value=48 Score=18.10 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=13.3
Q ss_pred eeeeEEEEEcCCCCEEEecCee
Q psy11244 41 YLGLIHLQYNDKGNIVSWRGDP 62 (102)
Q Consensus 41 yLG~ldv~fd~~G~v~~~~g~p 62 (102)
|=+.+.+.+|++|++....|.-
T Consensus 29 ~g~~~~v~~~~~g~v~sv~G~~ 50 (51)
T PF07504_consen 29 YGGELIVHVDKDGKVVSVNGDL 50 (51)
T ss_dssp -S--EEEEE-ETTEEEEEEEEE
T ss_pred eCCEEEEEEcCCCCEEEEeeee
Confidence 4456777888888888777653
No 30
>PF11396 DUF2874: Protein of unknown function (DUF2874); InterPro: IPR021533 This bacterial family of proteins are probable periplasmic proteins with unknown function. There are between one and four copies of this domain per sequence. ; PDB: 3DUE_A 3U1W_B 3DB7_A 4DSD_A 3ELG_A.
Probab=27.03 E-value=58 Score=18.11 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=8.7
Q ss_pred eEEEEEcCCCCEE
Q psy11244 44 LIHLQYNDKGNIV 56 (102)
Q Consensus 44 ~ldv~fd~~G~v~ 56 (102)
..+|.||.+|+++
T Consensus 49 ~~~v~fd~~G~~l 61 (61)
T PF11396_consen 49 EYEVYFDANGNWL 61 (61)
T ss_dssp SEEEEEETTS-EE
T ss_pred eEEEEEcCCCCCC
Confidence 5678888888653
No 31
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=23.12 E-value=92 Score=20.43 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=12.0
Q ss_pred eEEEEEcCCCCEEE
Q psy11244 44 LIHLQYNDKGNIVS 57 (102)
Q Consensus 44 ~ldv~fd~~G~v~~ 57 (102)
.+.|.||.+|+|.+
T Consensus 79 ~~tV~Fd~~G~V~~ 92 (109)
T PRK11251 79 TYFVSFDDTGHVDN 92 (109)
T ss_pred EEEEEECCCCCEEe
Confidence 68899999998874
No 32
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=21.02 E-value=2.5e+02 Score=19.83 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=26.6
Q ss_pred CCCccEEEecCCCCcEEEEEecccccceeeeEEEEEcCCCCEEEec
Q psy11244 14 KGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWR 59 (102)
Q Consensus 14 ~g~yP~vv~~~~dG~~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~ 59 (102)
..|+..+|.+ .+| .+-.||.-+. -+-.-+-+|++|+|..+.
T Consensus 101 ~~p~s~~vlD-~~G---~~~~aW~L~~-~~SaiiVlDK~G~V~F~k 141 (160)
T PF09695_consen 101 EFPWSQFVLD-SNG---VVRKAWQLQE-ESSAIIVLDKQGKVQFVK 141 (160)
T ss_pred hCCCcEEEEc-CCC---ceeccccCCC-CCceEEEEcCCccEEEEE
Confidence 4677778888 777 2455555443 344556778888888654
No 33
>PF02381 MraZ: MraZ protein; InterPro: IPR020603 this entry represents the 70 amino acid region found duplicated in the bacterial proteins MraZ. These proteins may be DNA-binding transcription factors, its members are probably enzymes containing a conserved DXXXR motif that probably forms part of the active site.; PDB: 1N0F_E 1N0E_F 1N0G_A.
Probab=20.99 E-value=53 Score=19.22 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=12.9
Q ss_pred eeeeEEEEEcCCCCEEE
Q psy11244 41 YLGLIHLQYNDKGNIVS 57 (102)
Q Consensus 41 yLG~ldv~fd~~G~v~~ 57 (102)
|.|.-++++|+.|+|..
T Consensus 2 f~g~~~~~lD~kGRi~i 18 (72)
T PF02381_consen 2 FAGAYEHTLDDKGRISI 18 (72)
T ss_dssp CTTEEEEEB-TTSEEE-
T ss_pred CCCCeeCCcCCCCCEec
Confidence 56888999999999873
No 34
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=20.89 E-value=76 Score=21.87 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=15.5
Q ss_pred EEEEEecccccceeeeEEEEEc
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYN 50 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd 50 (102)
..+..++ +||+||.--+..|-
T Consensus 52 ~~v~L~s-aYGrYL~as~~~~~ 72 (142)
T PF04601_consen 52 NYVRLRS-AYGRYLAASDEPAL 72 (142)
T ss_pred CEEEEee-ccCceEeccCCcCC
Confidence 4556665 99999998776663
No 35
>PF03738 GSP_synth: Glutathionylspermidine synthase preATP-grasp; InterPro: IPR005494 This region contains the Glutathionylspermidine synthase enzymatic activity 6.3.1.8 from EC. This is the C-terminal region in bienzymes such as P43675 from SWISSPROT. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design [].; PDB: 2VPM_B 2VOB_B 2VPS_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B 3O98_B.
Probab=20.39 E-value=30 Score=21.61 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=20.0
Q ss_pred ecccccceeeeEEEEEcCCCCEEEecCeeEE
Q psy11244 34 QAAAYSRYLGLIHLQYNDKGNIVSWRGDPIL 64 (102)
Q Consensus 34 qag~~g~yLG~ldv~fd~~G~v~~~~g~pi~ 64 (102)
|||...++++--+|.++++|.+....+.+|.
T Consensus 26 qaG~~~~~~~i~~l~~~~~g~~~d~~~~~I~ 56 (97)
T PF03738_consen 26 QAGLDTRFIPIEDLGWDEDGRFYDGDGRPID 56 (97)
T ss_dssp HTT-EEEEETTTTEEE-TTS-EEETTS-B--
T ss_pred HCCCCeEEechHheEECCCCcEECCCCCChh
Confidence 6788888888888999877888776665543
Done!