Query psy11244
Match_columns 102
No_of_seqs 115 out of 605
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 21:48:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h2g_A 5'-nucleotidase; dimer, 99.7 1.4E-16 4.6E-21 126.9 6.9 96 3-101 248-345 (546)
2 2z1a_A 5'-nucleotidase; metal- 99.6 4.4E-15 1.5E-19 118.2 7.0 90 11-101 251-343 (552)
3 4h1s_A 5'-nucleotidase; hydrol 99.5 8.2E-14 2.8E-18 110.1 7.7 92 9-101 230-323 (530)
4 3ztv_A NAD nucleotidase, NADN; 99.4 8.4E-14 2.9E-18 111.6 5.4 89 11-100 241-366 (579)
5 3ive_A Nucleotidase; structura 98.8 2.1E-09 7.1E-14 84.8 4.1 82 14-101 237-322 (509)
6 2wdc_A SOXB, sulfur oxidation 98.7 7.4E-09 2.5E-13 82.9 4.4 79 16-101 292-373 (562)
7 1hp1_A 5'-nucleotidase; metall 98.6 1.2E-08 4E-13 80.3 1.9 72 29-101 257-339 (516)
8 3qfk_A Uncharacterized protein 98.5 4.5E-08 1.5E-12 77.4 4.0 69 29-100 258-329 (527)
9 3jyf_A 2',3'-cyclic nucleotide 98.3 3.1E-07 1.1E-11 69.5 2.8 53 29-81 267-328 (339)
10 3gve_A YFKN protein; alpha-bet 98.2 4.5E-07 1.6E-11 68.6 2.7 53 29-81 274-330 (341)
11 3c9f_A 5'-nucleotidase; 2',3'- 98.0 3.7E-07 1.3E-11 73.2 -1.2 73 29-101 250-339 (557)
12 2yh9_A Small protein A, BAME p 43.4 15 0.0005 21.8 2.2 20 43-62 56-75 (88)
13 3vgi_A Endoglucanase A; beta-j 34.5 57 0.0019 24.2 4.6 43 13-56 58-104 (319)
14 2km7_A Small protein A; BAME, 33.2 26 0.00089 21.4 2.2 18 44-61 71-88 (102)
15 2kzx_A Uncharacterized protein 22.2 1.5E+02 0.0053 18.6 4.5 33 30-63 5-39 (131)
16 1pm3_A MTH1895; unknown functi 21.4 1.1E+02 0.0039 18.3 3.6 29 25-57 27-57 (97)
No 1
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=99.65 E-value=1.4e-16 Score=126.92 Aligned_cols=96 Identities=35% Similarity=0.646 Sum_probs=86.1
Q ss_pred CCCCCCCCCCCCCCccEEEecCCCCcEEEEEecccccceeeeEEEEEcCCCCEEEecCeeEEecCCcccCccccccccc-
Q psy11244 3 GRKPPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDKHIQEVENNTVIELP- 81 (102)
Q Consensus 3 ~~~~~~~~~~~~g~yP~vv~~~~dG~~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~l~~~i~~Dp~~~~~v~~- 81 (102)
|+ +| +.+.+.|+||+++.+ .+|++|+|+|||+||+|||+++|+||.+|+++.+.+.++.++..+++||++++++++
T Consensus 248 g~-~~-~~~~~~g~yp~~v~~-~~G~~~~ivqag~~g~~lg~i~l~~d~~g~~~~~~~~~i~~~~~~~~d~~v~~~v~~~ 324 (546)
T 4h2g_A 248 GN-PP-SKEVPAGKYPFIVTS-DDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLDSSIPEDPSIKADINKW 324 (546)
T ss_dssp SS-CS-SSCCCSSCSSEEEEC-TTSCEEEEECCCSTTSEEEEEEEEECTTSCEEEEEECCEECCTTSCCCHHHHHHHHHH
T ss_pred CC-CC-cccccCCCcceEEec-CCCCEEEEEecChhhcEEEEEEEEEecCCcEEEEeeeEEEcCCCCCCCHHHHHHHHHH
Confidence 44 56 677889999999999 999999999999999999999999998899999999999999899999999999864
Q ss_pred -ccccccccCeeccceEeccC
Q psy11244 82 -NHAHCSTLETYGNQALFYDR 101 (102)
Q Consensus 82 -~~~~~~~~~~ig~~~v~ldg 101 (102)
...++.+.++||.+.+.|++
T Consensus 325 ~~~~~~~~~~~ig~~~~~l~~ 345 (546)
T 4h2g_A 325 RIKLDDYSTQELGKTIVYLDG 345 (546)
T ss_dssp HHHHHHHHTSEEEEESSCBCC
T ss_pred HHHHHHHhcCeeeccceeccC
Confidence 45556789999999999986
No 2
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=99.56 E-value=4.4e-15 Score=118.22 Aligned_cols=90 Identities=23% Similarity=0.425 Sum_probs=81.2
Q ss_pred CCCCCCccEEEecCCCCcEEEEEecccccceeeeEEEEEcCCCCEEEecCeeEEecCCc-ccCccccccccc--cccccc
Q psy11244 11 DKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDKHI-QEVENNTVIELP--NHAHCS 87 (102)
Q Consensus 11 ~~~~g~yP~vv~~~~dG~~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~l~~~i-~~Dp~~~~~v~~--~~~~~~ 87 (102)
+.+.++||+++++ ++|++|+|+|||+||+|||+++|+||.+|+++.+.+.++.++..+ ++||++.+++++ ...++.
T Consensus 251 ~~~~g~~p~~v~~-~~g~~~~ivqag~~g~~lg~i~l~~d~~g~v~~~~~~~i~~~~~~~~~d~~v~~~v~~~~~~~~~~ 329 (552)
T 2z1a_A 251 LSPAGPYPTVVKN-PEGKDVLVVQAWEWGKVVGLLEVTFDAKGELLAYKGEALLMTPEAAPEDFFAKEALLAYAQPVMAL 329 (552)
T ss_dssp CCCSBCSSEEEEC-TTSCEEEEEECCSTTSEEEEEEEEECTTSCEEEEEEEEEECSTTTCCCCHHHHHHHHHHHGGGHHH
T ss_pred ccccCCCceeEec-CCCCEEEEEecChhhcEEEEEEEEEcCCCCEEEecceEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 4568999999999 999999999999999999999999998899999999999998888 999999999854 556667
Q ss_pred ccCeeccceEeccC
Q psy11244 88 TLETYGNQALFYDR 101 (102)
Q Consensus 88 ~~~~ig~~~v~ldg 101 (102)
+.++||.+.+.|++
T Consensus 330 ~~~~ig~~~~~l~~ 343 (552)
T 2z1a_A 330 MQQVIAEAKVDLVG 343 (552)
T ss_dssp HHCEEEEESSCBCC
T ss_pred hcceEEEecccccC
Confidence 88999999999875
No 3
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=99.47 E-value=8.2e-14 Score=110.15 Aligned_cols=92 Identities=33% Similarity=0.590 Sum_probs=81.2
Q ss_pred CCCCCCCCccEEEecCCCCcEEEEEecccccceeeeEEEEEcCCCCEEEecCeeEEecCCcccCccccccccc--ccccc
Q psy11244 9 PHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDKHIQEVENNTVIELP--NHAHC 86 (102)
Q Consensus 9 ~~~~~~g~yP~vv~~~~dG~~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~l~~~i~~Dp~~~~~v~~--~~~~~ 86 (102)
+.+.+.|+||+++.+ .+|++|+|+|||+||+|||+++|+||.+|+++.+.+.++.++..+++||++.+.+.+ ...++
T Consensus 230 ~~~~~~g~~~~~v~~-~~g~~v~ivqag~~g~~lg~i~l~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~~~~~ 308 (530)
T 4h1s_A 230 SKEVPAGKYPFIVTS-DDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLNSSIPEDPSIKADINKWRIKLDN 308 (530)
T ss_dssp SSCCCSBCSSEEEEC-TTSCEEEEECCCSTTSEEEEEEEEECTTSCEEEEEECCEECCTTSCCCHHHHHHHHHHHGGGTT
T ss_pred cccccCCCCCEEEEC-CCCCEEEEEecCcccccceEEEEEEcCCCcEEeeccceeeecccccccHHHHHHHHHHHHHHHH
Confidence 556678999999999 999999999999999999999999999999999999999999999999999998853 56667
Q ss_pred cccCeeccceEeccC
Q psy11244 87 STLETYGNQALFYDR 101 (102)
Q Consensus 87 ~~~~~ig~~~v~ldg 101 (102)
.+.+++|.+.+.|++
T Consensus 309 ~~~~~ig~~~~~l~~ 323 (530)
T 4h1s_A 309 YSTQELGKTIVYLDG 323 (530)
T ss_dssp C--CEEEEESSCBCC
T ss_pred hhhccceeeeeeccc
Confidence 788899999888875
No 4
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=99.43 E-value=8.4e-14 Score=111.64 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=74.5
Q ss_pred CCCCCCccEEEecCCCCcEEEEEecccccceeeeEEEEEcCCCCEEEecCeeEE-ecC----------------------
Q psy11244 11 DKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPIL-LDK---------------------- 67 (102)
Q Consensus 11 ~~~~g~yP~vv~~~~dG~~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~-l~~---------------------- 67 (102)
..+.++||+++++ ++|++|+|+|||+||+|||+++|+||.+|+++.+.+.+.+ ++.
T Consensus 241 ~~~~~~~p~~v~~-~~G~~~~ivqag~~g~~lg~l~l~~d~~g~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (579)
T 3ztv_A 241 LPVIYEYPLEFKN-PNGEPVFVMEGWAYSAVVGDLGVKFSPEGIASITRKIPHVLMSSHKLQVKNSEGKWAELTGDERKK 319 (579)
T ss_dssp CCEEEESSEEEEC-TTSCEEEEEEBCSTTCEEEEEEEEECTTCCEEEEEEEEEEEECSSCCEEECTTSCEEECCHHHHHH
T ss_pred ccccCCCceEEeC-CCCCEEEEEecChHHheEEEEEEEEeCCCcEEEecCcceeeccccccccccccccceeccchhhhh
Confidence 3456789999999 9999999999999999999999999988999999887743 332
Q ss_pred ------------CcccCccccccccc--ccccccccCeeccceEecc
Q psy11244 68 ------------HIQEVENNTVIELP--NHAHCSTLETYGNQALFYD 100 (102)
Q Consensus 68 ------------~i~~Dp~~~~~v~~--~~~~~~~~~~ig~~~v~ld 100 (102)
.+++||++++++.+ ....+.+.++||.+.+.|.
T Consensus 320 ~~~~~~~~~~~~~~~~D~~v~~~v~~~~~~~~~~~~~~Ig~~~~~l~ 366 (579)
T 3ztv_A 320 ALDTLKSMKSISLDDHDAKTDKLIAKYKSEKDRLAQEIVGVITGSAM 366 (579)
T ss_dssp HHHHHHTCTTEEESCCCHHHHHHHHHHHHHHHHHTTSEEEEEESSCB
T ss_pred hhhhhccccccccCCCCHHHHHHHHHHHHHHHHHhCceEEEeccccc
Confidence 25889999988864 4456678899999999883
No 5
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=98.82 E-value=2.1e-09 Score=84.80 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCCccEEEecCCCCcEEEEEecccccceeeeEEEEEcCCCC-EEEecCeeEEe-cCCcccCccccccccc--cccccccc
Q psy11244 14 KGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGN-IVSWRGDPILL-DKHIQEVENNTVIELP--NHAHCSTL 89 (102)
Q Consensus 14 ~g~yP~vv~~~~dG~~v~Ivqag~~g~yLG~ldv~fd~~G~-v~~~~g~pi~l-~~~i~~Dp~~~~~v~~--~~~~~~~~ 89 (102)
..++|..+.+ ++|+|+|+||+|||+++|+||.+++ +..+.+..+.+ +..+++||++.+++.+ ....+.+.
T Consensus 237 ~~~~~~~~~~------~~ivqag~~g~~lg~i~l~~d~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~~~~~~~~ 310 (509)
T 3ive_A 237 GTPEPIKVGN------TLILSTDSGGIDVGKLVLDYKEKPHNFTVKNFELKTIYADEWKPDQQTKQVIDGWNKKLDEVVQ 310 (509)
T ss_dssp CCSSCEEETT------EEEECCCSTTSEEEEEEEEECSSTTCEEEEEEEEEECBGGGCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCeeeCC------EEEEecChhhceeEEEEEEEECCCCeEEecCCeeEeeecccccchHHHHHHHHHHHHHHHHHhC
Confidence 3466776654 9999999999999999999997654 45556555544 5678999999999864 45556788
Q ss_pred CeeccceEeccC
Q psy11244 90 ETYGNQALFYDR 101 (102)
Q Consensus 90 ~~ig~~~v~ldg 101 (102)
++||.+.+.|++
T Consensus 311 ~~ig~~~~~l~~ 322 (509)
T 3ive_A 311 QTVAQSPVELKR 322 (509)
T ss_dssp CEEEEESSCBCC
T ss_pred CceEEccccccc
Confidence 999999998874
No 6
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=98.72 E-value=7.4e-09 Score=82.91 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=64.2
Q ss_pred CccEEEecCCCCcEEEEEecccccceeeeEEEEEcCCCCEEEecCeeEEec-CCcccCccccccccc--ccccccccCee
Q psy11244 16 PYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLD-KHIQEVENNTVIELP--NHAHCSTLETY 92 (102)
Q Consensus 16 ~yP~vv~~~~dG~~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~~g~pi~l~-~~i~~Dp~~~~~v~~--~~~~~~~~~~i 92 (102)
++|.++. .|+|+|||+||+|||+++|+|+ +|+++.+.+..+.+. ..+++||++.+++++ ....+.+.++|
T Consensus 292 ~~~~~~~------~t~vvqag~~g~~lg~i~l~~~-~g~v~~~~~~~~~v~~~~~~~D~~v~~~i~~~~~~~~~~l~~~i 364 (562)
T 2wdc_A 292 PRPWRVG------KTWIVAGSAAGKALMRVDLKLW-KGGIANLRVRVLPVLAEHLPKAEDVEAFLKAQLAPHQDHLFTPL 364 (562)
T ss_dssp SSCEEET------TEEEEECCSTTCEEEEEEEEEE-TTEEEEEEEEEEECBGGGSCCCHHHHHHHHHHHGGGHHHHHSCS
T ss_pred ccCEEEC------CEEEEecCccccEEEEEEEEEe-CCcEEEEeeEEEeecccccCCCHHHHHHHHHHHhhHHHHhCcEE
Confidence 4566653 3999999999999999999998 688888887776663 568999999999853 45566788999
Q ss_pred ccceEeccC
Q psy11244 93 GNQALFYDR 101 (102)
Q Consensus 93 g~~~v~ldg 101 (102)
|.+.+.|.+
T Consensus 365 g~~~~~l~~ 373 (562)
T 2wdc_A 365 AVSETLLYK 373 (562)
T ss_dssp EEESSCBCC
T ss_pred EEccceeec
Confidence 999888864
No 7
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=98.59 E-value=1.2e-08 Score=80.34 Aligned_cols=72 Identities=18% Similarity=0.334 Sum_probs=56.1
Q ss_pred EEEEEecccccceeeeEEEEEcCCCCEEE--ecCeeE-------EecCCcccCccccccccc--ccccccccCeeccceE
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDKGNIVS--WRGDPI-------LLDKHIQEVENNTVIELP--NHAHCSTLETYGNQAL 97 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~G~v~~--~~g~pi-------~l~~~i~~Dp~~~~~v~~--~~~~~~~~~~ig~~~v 97 (102)
.|+|+|||+||+|||+++|+|+ +|++.. ++..|+ .+++.+++||++.+++.+ ....+.+.++||.+.+
T Consensus 257 ~~~iv~ag~~g~~lg~i~l~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~v~~~v~~~~~~~~~~~~~~ig~~~~ 335 (516)
T 1hp1_A 257 GIWIVQAHEWGKYVGRADFEFR-NGEMKMVNYQLIPVNLKKKRVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNG 335 (516)
T ss_dssp TEEEECBCSTTSEEEEEEEEEE-TTEEEEEEEEEEESSCEETTEESSCCCCCCHHHHHHHHHHHHHHHHHTTSEEEEESS
T ss_pred CcEEEecChhhhcccEEEEEEE-CCeEEEEecccccccccccceeccCCCCCCHHHHHHHHHHHHHHHHHhCceEEEccc
Confidence 4999999999999999999998 465443 333332 345678999999999864 4555678899999999
Q ss_pred eccC
Q psy11244 98 FYDR 101 (102)
Q Consensus 98 ~ldg 101 (102)
.|++
T Consensus 336 ~l~~ 339 (516)
T 1hp1_A 336 RLEG 339 (516)
T ss_dssp CBCC
T ss_pred cccC
Confidence 8875
No 8
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=98.54 E-value=4.5e-08 Score=77.41 Aligned_cols=69 Identities=12% Similarity=-0.104 Sum_probs=54.5
Q ss_pred EEEEEecccccceeeeEEEEEcCC-CCEEEecCeeEEecCCcccCccccccccc--ccccccccCeeccceEecc
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDK-GNIVSWRGDPILLDKHIQEVENNTVIELP--NHAHCSTLETYGNQALFYD 100 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~-G~v~~~~g~pi~l~~~i~~Dp~~~~~v~~--~~~~~~~~~~ig~~~v~ld 100 (102)
.|+|+|||+||+|||+++|+||.+ +.++ .. ..++...+++||++++++++ ....+.+.++||.+.+.|+
T Consensus 258 ~~~ivqag~~g~~lg~i~l~~~~~~~~~v-~~--~~l~~~~~~~d~~~~~~v~~~~~~~~~~~~~~ig~~~~~l~ 329 (527)
T 3qfk_A 258 QTAVIQPGTRGTTVGRVVLSTDEYENLSV-ES--CELLPVIDDSTFTIDEDDQHLRKQLEDWLDYEITTLPYDMT 329 (527)
T ss_dssp TEEEEEECSTTSEEEEEEEEECSSCCEEE-EE--EEEEECCCCTTCCCCHHHHHHHHHHHHHHTCEEEECSSCEE
T ss_pred CEEEeccChhhCEEEEEEEEEECCCCeEE-Ee--EEEEeCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEeccccc
Confidence 399999999999999999999976 4443 22 33333378999999999964 4566778999999998886
No 9
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=98.28 E-value=3.1e-07 Score=69.54 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=41.2
Q ss_pred EEEEEecccccceeeeEEEEEcC-CCC--EEEecC--eeEEec----CCcccCccccccccc
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYND-KGN--IVSWRG--DPILLD----KHIQEVENNTVIELP 81 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~-~G~--v~~~~g--~pi~l~----~~i~~Dp~~~~~v~~ 81 (102)
.|+|+|+|+||+|||+++|+|+. +|+ ++.... .|+..+ +.+++||++.+.+.+
T Consensus 267 ~v~vvqag~~G~~lg~idl~~~~~~g~~~v~~~~~~~~pi~~~~~~~~~v~~D~~i~~~~~~ 328 (339)
T 3jyf_A 267 GVPAVMPGMWGDHLGVVDLVLNNDSGKWQVTQSKAEARPIYDAVAKKSLAAEDGKLVSVLKA 328 (339)
T ss_dssp TEEEEEECSTTSEEEEEEEEEECTTSSCEEEEEEEEEEESEETTTTEESSCCCHHHHHHHHH
T ss_pred CEEEEcCCcccccceEEEEEEEcCCCceEEeeeeEEEEEecccccccccCCCCHHHHHHHHH
Confidence 58999999999999999999996 354 555444 455543 468999999988854
No 10
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=98.23 E-value=4.5e-07 Score=68.60 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=41.8
Q ss_pred EEEEEecccccceeeeEEEEEcCCC---CEEEecCeeEEec-CCcccCccccccccc
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDKG---NIVSWRGDPILLD-KHIQEVENNTVIELP 81 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~G---~v~~~~g~pi~l~-~~i~~Dp~~~~~v~~ 81 (102)
.|+|+|||+||+|||+++|+|+.++ +|+......+.+. ..+++||++.+++.+
T Consensus 274 ~~~vvqag~~g~~lg~idl~~~~~~~~~~v~~~~~~~~pi~~~~~~~D~~i~~~~~~ 330 (341)
T 3gve_A 274 GIPVVMPSSWGKYLGVIDLKLEKADGSWKVADSKGSIESIAGNVTSRNETVTNTIQQ 330 (341)
T ss_dssp TEEEEEECSTTSEEEEEEEEEEEETTEEEEEEEEEEEEESTTTCCSCCHHHHHHHHH
T ss_pred CEEEEeCChhhcEEEEEEEEEEcCCCcEEEEeeeEEEEecccCCCCCCHHHHHHHHH
Confidence 5999999999999999999999643 3555556556654 367899999988854
No 11
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=98.04 E-value=3.7e-07 Score=73.16 Aligned_cols=73 Identities=8% Similarity=-0.022 Sum_probs=52.3
Q ss_pred EEEEEecccccceeeeEEEEEcCCCCEEEe--cCeeEEe---------------cCCcccCcccccccccccccccccCe
Q psy11244 29 QVLVVQAAAYSRYLGLIHLQYNDKGNIVSW--RGDPILL---------------DKHIQEVENNTVIELPNHAHCSTLET 91 (102)
Q Consensus 29 ~v~Ivqag~~g~yLG~ldv~fd~~G~v~~~--~g~pi~l---------------~~~i~~Dp~~~~~v~~~~~~~~~~~~ 91 (102)
.++|+|+|+|++|||+++|+||.+|+.+.+ .+.+.++ +..+++|+++.+++++....-.+.++
T Consensus 250 ~t~ivqaG~~g~~lG~l~l~~d~~g~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~v~~~i~~~~~~~~l~~v 329 (557)
T 3c9f_A 250 LSTGLQSGRYCETVGWTSVNLDKADLNLPVRQRFSRSYIDFNTDSFKYHTNLDKEFDTAKGKLVSKLIRETRKELKLDTL 329 (557)
T ss_dssp TEEEEEECSTTSEEEEEEECCSCGGGCCCHHHHEEEEEEESSHHHHHHHHTCSTTCCCHHHHHHHHHHHHHHHHTTTTCE
T ss_pred CeEeeeccchhcEEEEEEEEEeCCCCeeeeecccceeeecccccceeecccccccccCCCCHHHHHHHHHHHHHhhcccc
Confidence 489999999999999999999977764432 2222222 23467889998888653322236789
Q ss_pred eccceEeccC
Q psy11244 92 YGNQALFYDR 101 (102)
Q Consensus 92 ig~~~v~ldg 101 (102)
||.+.+.|++
T Consensus 330 iG~~~~~L~~ 339 (557)
T 3c9f_A 330 IGYVKTNYYV 339 (557)
T ss_dssp EEEESSCBBS
T ss_pred eEeccccccc
Confidence 9999988874
No 12
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=43.38 E-value=15 Score=21.81 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=16.2
Q ss_pred eeEEEEEcCCCCEEEecCee
Q psy11244 43 GLIHLQYNDKGNIVSWRGDP 62 (102)
Q Consensus 43 G~ldv~fd~~G~v~~~~g~p 62 (102)
-.+.|.||++|+|..+.+..
T Consensus 56 ~~l~V~Fd~~g~V~~~~~~~ 75 (88)
T 2yh9_A 56 QTLTLTFNSSGVLTNIDNKP 75 (88)
T ss_dssp CEEEEEECTTSBEEEEEEEC
T ss_pred EEEEEEEcCCCeEEEEEccc
Confidence 35899999999999887644
No 13
>3vgi_A Endoglucanase A; beta-jelly roll fold, hydrolase, carbohydrate/sugar binding; HET: NHE GOL; 1.07A {Pyrococcus furiosus}
Probab=34.53 E-value=57 Score=24.24 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=33.8
Q ss_pred CCCCccE--EEecCCCCcEEEEEecccccc--eeeeEEEEEcCCCCEE
Q psy11244 13 PKGPYPI--VVTSSVDNRQVLVVQAAAYSR--YLGLIHLQYNDKGNIV 56 (102)
Q Consensus 13 ~~g~yP~--vv~~~~dG~~v~Ivqag~~g~--yLG~ldv~fd~~G~v~ 56 (102)
..|+||. ++.| .||...++++-.-|.. ..|...+.|+..+..+
T Consensus 58 ~~~~~~~~~~~~~-~d~~~~~~i~~NlWNi~s~~G~~~m~~~~~~~~~ 104 (319)
T 3vgi_A 58 DDGEWPGAPIDKD-GDGNPEFYIEINLWNILNATGFAEMTYNLTSGVL 104 (319)
T ss_dssp TTCSSCEEEECTT-CSSSCSEEEECCCTTEEEEEEEEEEEEETTTCCE
T ss_pred CCCCCCCceEEEc-CCCCeeEEEEecccccccceeEEEEEEecCCceE
Confidence 3688986 6778 8998999999977764 8999999998554333
No 14
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=33.18 E-value=26 Score=21.41 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=15.3
Q ss_pred eEEEEEcCCCCEEEecCe
Q psy11244 44 LIHLQYNDKGNIVSWRGD 61 (102)
Q Consensus 44 ~ldv~fd~~G~v~~~~g~ 61 (102)
.+.|.||++|++..+.+.
T Consensus 71 ~l~V~Fd~~g~V~~i~~~ 88 (102)
T 2km7_A 71 TLTLTFNSSGVLTNIDNK 88 (102)
T ss_dssp CEEEEEETTTEEEEEECC
T ss_pred EEEEEECCCCeEEEEecc
Confidence 599999988999888764
No 15
>2kzx_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium thermocellum}
Probab=22.21 E-value=1.5e+02 Score=18.63 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=22.6
Q ss_pred EEEEecccc--cceeeeEEEEEcCCCCEEEecCeeE
Q psy11244 30 VLVVQAAAY--SRYLGLIHLQYNDKGNIVSWRGDPI 63 (102)
Q Consensus 30 v~Ivqag~~--g~yLG~ldv~fd~~G~v~~~~g~pi 63 (102)
++-.++-.+ .-|-+.+.|++. +|+|+.+....+
T Consensus 5 tY~~~~~g~d~~G~~~~V~vtV~-dgkIt~i~i~~~ 39 (131)
T 2kzx_A 5 TYYAEADDFDESGWKDTVTIEVK-NGKIVSVDWNAI 39 (131)
T ss_dssp EEEEECSSCCTTSEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred EEEEEeccccCCCCeEEEEEEEE-CCEEEEEEEEEE
Confidence 666666433 346689999995 799987765433
No 16
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=21.40 E-value=1.1e+02 Score=18.25 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=19.7
Q ss_pred CCCcEEEEEecccccceeeeE-EEEEcC-CCCEEE
Q psy11244 25 VDNRQVLVVQAAAYSRYLGLI-HLQYND-KGNIVS 57 (102)
Q Consensus 25 ~dG~~v~Ivqag~~g~yLG~l-dv~fd~-~G~v~~ 57 (102)
..|++ |+. ..|+.||.+ |+.||. .|+|..
T Consensus 27 L~Gk~--Vin--~dG~~LG~V~Dv~iD~~~G~I~~ 57 (97)
T 1pm3_A 27 MVGKE--VLD--SSAKVIGKVKDVEVDIESQAIES 57 (97)
T ss_dssp SSSCE--EEC--TTSCEEEEEEEEEEETTTTEEEE
T ss_pred CCCCE--eEC--CCCCEEeEEEEEEEECCCCEEEE
Confidence 55644 444 588899988 688884 577753
Done!