RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11244
(102 letters)
>gnl|CDD|163652 cd07409, MPP_CD73_N, CD73 ecto-5'-nucleotidase and related
proteins, N-terminal metallophosphatase domain. CD73 is
a mammalian ecto-5'-nucleotidase expressed in
endothelial cells and lymphocytes that catalyzes the
conversion of 5'-AMP to adenosine in the final step of a
pathway that generates adenosine from ATP. This pathway
also includes a CD39 nucleoside triphosphate
dephosphorylase that mediates the dephosphorylation of
ATP to ADP and then to 5'-AMP. These enzymes all have
an N-terminal metallophosphatase domain and a C-terminal
5'nucleotidase domain. The N-terminal
metallophosphatase domain belongs to a large superfamily
of distantly related metallophosphatases (MPPs) that
includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA
lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 281
Score = 79.5 bits (197), Expect = 2e-19
Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 6 PPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILL 65
PP +KP GPYP VV ++ D R+VLVVQA AY +YLG + + ++D GN+ SW G+PILL
Sbjct: 223 PPPSGEKPVGPYPTVVKNA-DGRKVLVVQAYAYGKYLGYLDVTFDDNGNVTSWEGNPILL 281
>gnl|CDD|223808 COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and
related esterases [Nucleotide transport and metabolism].
Length = 517
Score = 40.1 bits (94), Expect = 5e-05
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 17 YPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILLDKHIQEVENNT 76
+P N +VQA Y +Y+G++ + ++ +G + + + + E+
Sbjct: 248 FPGGDKPGTVN-GTPIVQAGEYGKYVGVLDITFDGEGKVTDIKAVARPITDVTAKKEDPA 306
Query: 77 VIELPNHAH 85
V L +
Sbjct: 307 VEALIEYLQ 315
>gnl|CDD|163669 cd08162, MPP_PhoA_N, Synechococcus sp. strain PCC 7942 PhoA and
related proteins, N-terminal metallophosphatase domain.
Synechococcus sp. strain PCC 7942 PhoA is a large
atypical alkaline phosphatase. It is known to be
transported across the inner cytoplasmic membrane and
into the periplasmic space. In vivo inactivation of the
gene encoding PhoA leads to a loss of extracellular,
phosphate-regulated phosphatase activity, but does not
appear to affect the cells capacity for phosphate
uptake. PhoA may play a role in scavenging phosphate
during growth of Synechococcus sp. strain PCC 7942 in
its natural environment. PhoA belongs to a domain
family which includes the bacterial enzyme UshA and
several other related enzymes including SoxB, CpdB,
YhcR, and CD73. All members have a similar domain
architecture which includes an N-terminal
metallophosphatase domain and a C-terminal nucleotidase
domain. The N-terminal metallophosphatase domain
belongs to a large superfamily of distantly related
metallophosphatases (MPPs) that includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 313
Score = 38.9 bits (91), Expect = 1e-04
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 9 PHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGD 61
P D G YP+V T + D VL+V +Y+G + + ++ G I+
Sbjct: 254 PGDTAAGDYPLVTTDA-DGNPVLIVNTDGNYKYVGRLVVDFDANGVIIPISDA 305
>gnl|CDD|223027 PHA03262, PHA03262, Capsid triplex subunit 1; Provisional.
Length = 264
Score = 30.0 bits (68), Expect = 0.16
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 9 PHDKPKGPYPI-VVTSSVDNRQVLV 32
++ P+G I VV SSV +R LV
Sbjct: 166 DYNGPEGKPGIYVVLSSVRHRHTLV 190
>gnl|CDD|211667 TIGR01530, nadN, NAD pyrophosphatase/5'-nucleotidase NadN. This
model describes NadN of Haemophilus influenzae and a
small number of close homologs in pathogenic,
Gram-negative bacteria. NadN is a periplasmic enzyme
that cleaves NAD (nicotinamide adenine dinucleotide) to
NMN (nicotinamide mononucleotide) and AMP. The NMN must
be converted by a 5'-nucleotidase to nicotinamide
riboside for import. NadN belongs a large family of
5'-nucleotidases and has NMN 5'-nucleotidase activity
for NMN, AMP, etc [Transport and binding proteins,
Other, Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 545
Score = 28.4 bits (63), Expect = 0.54
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 15 GPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDP-ILLDKHIQEVE 73
YP+ + + V V++ AYS +G + ++++ +G R P +L+ H +V+
Sbjct: 233 YEYPLEFKNP-NGEPVFVMEGWAYSAVVGDLGVKFSPEGIASITRKIPHVLMSSHKLQVK 291
Query: 74 N 74
N
Sbjct: 292 N 292
>gnl|CDD|236505 PRK09419, PRK09419, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 1163
Score = 28.2 bits (63), Expect = 0.68
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 30 VLVVQAAAYSRYLGLIHLQYNDKGNIV--SWRGDPILLDKHIQE 71
VVQA Y R LG + ++++ KG +V + R D +D + E
Sbjct: 890 TPVVQAYKYGRALGRVDVKFDKKGVVVVKTSRIDLSKIDDDLPE 933
>gnl|CDD|163620 cd00845, MPP_UshA_N_like, Escherichia coli UshA-like family,
N-terminal metallophosphatase domain. This family
includes the bacterial enzyme UshA, and related enzymes
including SoxB, CpdB, YhcR, and CD73. All members have
a similar domain architecture which includes an
N-terminal metallophosphatase domain and a C-terminal
nucleotidase domain. The N-terminal metallophosphatase
domain belongs to a large superfamily of distantly
related metallophosphatases (MPPs) that includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 252
Score = 28.0 bits (63), Expect = 0.76
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 29 QVLVVQAAAYSRYLGLIHLQYNDKGNIV 56
L+VQA Y +Y+G I L+ +D V
Sbjct: 215 GTLIVQAGKYGKYVGEIDLELDDDTKKV 242
>gnl|CDD|226714 COG4263, NosZ, Nitrous oxide reductase [Energy production and
conversion].
Length = 637
Score = 26.8 bits (59), Expect = 2.0
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 15/65 (23%)
Query: 42 LGLIHLQYNDKGN----------IVSWRGDPIL-----LDKHIQEVENNTVIELPNHAHC 86
LG +H ++ +GN IV W + + V P H H
Sbjct: 377 LGPLHTTFDGRGNAYTTLFIDSQIVKWNIEDADRARKGEKVVDYIRQKLDVHYQPGHNHA 436
Query: 87 STLET 91
S LET
Sbjct: 437 SWLET 441
>gnl|CDD|224481 COG1565, COG1565, Uncharacterized conserved protein [Function
unknown].
Length = 370
Score = 26.9 bits (60), Expect = 2.0
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 60 GDPILLDKHIQEVENNTVIELPNHAHCSTLETYGNQALFYD 100
G P H + T+ +H H L G L
Sbjct: 243 GYPAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAH 283
>gnl|CDD|240366 PTZ00334, PTZ00334, trans-sialidase; Provisional.
Length = 780
Score = 26.4 bits (58), Expect = 2.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 21 VTSSVDNRQVLVVQAAAYSRYL----GLIHLQYNDKGNIV 56
T++++NR V++V YS G +HL D +IV
Sbjct: 373 STATIENRDVMLVTLPVYSNRKGKEKGELHLWLTDNTHIV 412
>gnl|CDD|163655 cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and
related proteins, N-terminal metallophosphatase domain.
YhcR is a Bacillus subtilis sugar-nonspecific
endonuclease. It cleaves endonucleolytically to yield
nucleotide 3'-monophosphate products, similar to
Staphylococcus aureus micrococcal nuclease. YhcR appears
to be located in the cell wall, and is thought to be a
substrate for a Bacillus subtilis sortase. YhcR is the
major calcium-activated nuclease of B. subtilis. The
N-terminal metallophosphatase domain belongs to a large
superfamily of distantly related metallophosphatases
(MPPs) that includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 288
Score = 25.3 bits (56), Expect = 5.5
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 30 VLVVQAAAYSRYLGLIHLQYN-DKGNIVSWR 59
LV QA +Y + + + L + ++V+
Sbjct: 252 RLVTQAGSYGKAVADVDLTIDPATKDVVNKS 282
>gnl|CDD|226668 COG4213, XylF, ABC-type xylose transport system, periplasmic
component [Carbohydrate transport and metabolism].
Length = 341
Score = 25.4 bits (56), Expect = 6.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 24 SVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDP 62
S DN +V +QA A + L L +GN V G P
Sbjct: 126 SFDNEKVGELQAKALVKGLKLK--PLTSEGNYVLLGGSP 162
>gnl|CDD|163651 cd07408, MPP_SA0022_N, Staphylococcus aureus SA0022 and related
proteins, N-terminal metallophosphatase domain. SA0022
is an uncharacterized Staphylococcus aureus UshA-like
protein with two putative domains, an N-terminal
metallophosphatase domain and a C-terminal nucleotidase
domain. SA0022 also contains a putative C-terminal cell
wall anchor domain. The N-terminal metallophosphatase
domain belongs to a large superfamily of distantly
related metallophosphatases (MPPs) that includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 257
Score = 25.0 bits (55), Expect = 9.0
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 30 VLVVQAAAYSRYLGLIHLQYNDK 52
VL+ Q AY +G + L ++
Sbjct: 224 VLLTQTGAYLANIGEVTLVFDTT 246
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.426
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,141,674
Number of extensions: 418366
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 16
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)