RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11244
         (102 letters)



>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), N-terminal domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 302

 Score = 58.0 bits (139), Expect = 5e-12
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 6   PPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYNDKGNIVSWRGDPILL 65
            P     P GPYP VV +  + + VLVVQA  + + +GL+ + ++ KG +++++G+ +L+
Sbjct: 219 FPHKELSPAGPYPTVVKNP-EGKDVLVVQAWEWGKVVGLLEVTFDAKGELLAYKGEALLM 277

Query: 66  D 66
            
Sbjct: 278 T 278


>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 337

 Score = 50.0 bits (118), Expect = 4e-09
 Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 6   PPCPHDKPKGPYPIVVTSSVDNRQVLVVQAAAYSRYLGLIHLQYND-KGNIVSWRGDPIL 64
               + K     P           + +VQA  + +Y+G    ++ + +  +V+++  P+ 
Sbjct: 234 MAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVN 293

Query: 65  LDKHIQEVE 73
           L K +   +
Sbjct: 294 LKKKVTWED 302


>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 467

 Score = 23.5 bits (49), Expect = 6.2
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 15 GPYPIVVTSSVD-NRQVLVVQAAAYS-RYLGLIHLQYNDKGNIVSWRGD 61
          G  PIVV    +  ++ L+     +S R +  +  + N    IV   G 
Sbjct: 45 GLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIVFSNGK 93


>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
          (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 465

 Score = 23.5 bits (49), Expect = 6.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 15 GPYPIVVTSSVD-NRQVLVVQAAAYS 39
          G  P+VV    D  R+ LV QA A+S
Sbjct: 44 GSRPVVVLCGTDAIREALVDQAEAFS 69


>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial
          cytochrome bc1-complex, water-soluble domain {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 129

 Score = 22.8 bits (48), Expect = 9.0
 Identities = 4/21 (19%), Positives = 8/21 (38%)

Query: 55 IVSWRGDPILLDKHIQEVENN 75
          +V W+G P+ +          
Sbjct: 22 VVKWQGKPVFIRHRTPHEIQE 42


>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 343

 Score = 22.9 bits (49), Expect = 9.0
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 13  PKGPYPIVVTSSVDNRQVLVVQAAAYSRY 41
           P+  Y  +VT     R+V +     +  Y
Sbjct: 310 PRAGYRGIVTFLFRGRRVHLAPPQTWDGY 338


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,291
Number of extensions: 15125
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 6
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)