BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11245
         (87 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UUL|A Chain A, Crystal Structure Of First N-Terminal Utrophin Spectrin
          Repeat
 pdb|3UUL|B Chain B, Crystal Structure Of First N-Terminal Utrophin Spectrin
          Repeat
          Length = 118

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/69 (18%), Positives = 32/69 (46%)

Query: 15 LNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQ 74
          + L E+  W+   +        I  D+  +++Q   H  F  +L   ++ + + + +G Q
Sbjct: 9  IALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQ 68

Query: 75 YLNEASLTD 83
           + + +L+D
Sbjct: 69 LMTQGTLSD 77


>pdb|3UUM|A Chain A, Crystal Structure Of N-Terminal First Spectrin Repeat Of
          Utrophin
 pdb|3UUM|B Chain B, Crystal Structure Of N-Terminal First Spectrin Repeat Of
          Utrophin
          Length = 123

 Score = 26.6 bits (57), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 13/69 (18%), Positives = 32/69 (46%)

Query: 15 LNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQ 74
          + L E+  W+   +        I  D+  +++Q   H  F  +L   ++ + + + +G Q
Sbjct: 9  IALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQ 68

Query: 75 YLNEASLTD 83
           + + +L+D
Sbjct: 69 LMTQGTLSD 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.133    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,328,869
Number of Sequences: 62578
Number of extensions: 73116
Number of successful extensions: 185
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 7
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)