BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11245
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0KI50|DMDD_DROME Dystrophin, isoform D OS=Drosophila melanogaster GN=Dys PE=1 SV=1
Length = 1854
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 76/90 (84%), Gaps = 3/90 (3%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSR--LGPIGGDINVLQKQEDDHRAFRRQL 58
NRLESNSEHWNALLL+LREL++WV RKD ELS LGP+ GD LQKQ DDH+AFRRQL
Sbjct: 929 NRLESNSEHWNALLLSLRELTEWVIRKDTELSTLGLGPVRGDAVSLQKQLDDHKAFRRQL 988
Query: 59 EDKRAIIENSILSGRQYL-NEASLTDLTDT 87
EDKR I+E+++ SGRQY+ NEA+++D +DT
Sbjct: 989 EDKRPIVESNLTSGRQYIANEAAVSDTSDT 1018
>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B OS=Drosophila melanogaster GN=Dys PE=1 SV=3
Length = 1669
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 76/90 (84%), Gaps = 3/90 (3%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSR--LGPIGGDINVLQKQEDDHRAFRRQL 58
NRLESNSEHWNALLL+LREL++WV RKD ELS LGP+ GD LQKQ DDH+AFRRQL
Sbjct: 744 NRLESNSEHWNALLLSLRELTEWVIRKDTELSTLGLGPVRGDAVSLQKQLDDHKAFRRQL 803
Query: 59 EDKRAIIENSILSGRQYL-NEASLTDLTDT 87
EDKR I+E+++ SGRQY+ NEA+++D +DT
Sbjct: 804 EDKRPIVESNLTSGRQYIANEAAVSDTSDT 833
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1
SV=3
Length = 3598
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 76/90 (84%), Gaps = 3/90 (3%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSR--LGPIGGDINVLQKQEDDHRAFRRQL 58
NRLESNSEHWNALLL+LREL++WV RKD ELS LGP+ GD LQKQ DDH+AFRRQL
Sbjct: 2572 NRLESNSEHWNALLLSLRELTEWVIRKDTELSTLGLGPVRGDAVSLQKQLDDHKAFRRQL 2631
Query: 59 EDKRAIIENSILSGRQYL-NEASLTDLTDT 87
EDKR I+E+++ SGRQY+ NEA+++D +DT
Sbjct: 2632 EDKRPIVESNLTSGRQYIANEAAVSDTSDT 2661
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 19 ELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQL 58
EL W+ R + R+G I ++L+ Q+ + ++F +L
Sbjct: 2377 ELEKWLARMEQRAERMGTIATTADILEAQQKEQKSFHAEL 2416
>sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1
Length = 3674
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
+ LE++S+ W L L+L+EL W+ KD ELSR PIGGD +QKQ D HRAF+R+L+
Sbjct: 2787 SHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDCPAVQKQNDVHRAFKRELKT 2846
Query: 61 KRAIIENSILSGRQYLNEASLTDL 84
K +I +++ + R +L E L L
Sbjct: 2847 KEPVIMSTLETVRIFLTEQPLEGL 2870
>sp|O97592|DMD_CANFA Dystrophin OS=Canis familiaris GN=DMD PE=2 SV=1
Length = 3680
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
+ LE++S+ W L L+L+EL W+ KD ELSR PIGGD +QKQ D HRAF+R+L+
Sbjct: 2793 SHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKT 2852
Query: 61 KRAIIENSILSGRQYLNEASLTDL 84
K +I +++ + R +L E L L
Sbjct: 2853 KEPVIMSTLETVRIFLTEQPLEGL 2876
>sp|P11531|DMD_MOUSE Dystrophin OS=Mus musculus GN=Dmd PE=1 SV=3
Length = 3678
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
+ LE++S+ W L L+L+EL W+ KD ELSR PIGGD +QKQ D HRAF+R+L+
Sbjct: 2791 SHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDIHRAFKRELKT 2850
Query: 61 KRAIIENSILSGRQYLNEASLTDL 84
K +I +++ + R +L E L L
Sbjct: 2851 KEPVIMSTLETVRIFLTEQPLEGL 2874
>sp|P11532|DMD_HUMAN Dystrophin OS=Homo sapiens GN=DMD PE=1 SV=3
Length = 3685
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
+ LE++S+ W L L+L+EL W+ KD ELSR PIGGD +QKQ D HRAF+R+L+
Sbjct: 2798 SHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKT 2857
Query: 61 KRAIIENSILSGRQYLNEASLTDL 84
K +I +++ + R +L E L L
Sbjct: 2858 KEPVIMSTLETVRIFLTEQPLEGL 2881
>sp|P11533|DMD_CHICK Dystrophin OS=Gallus gallus GN=DMD PE=2 SV=1
Length = 3660
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
+ LE++++ W L L+L+EL W+ K+ EL + PIGGDI +QKQ D HR F+R+L+
Sbjct: 2795 SHLEASTDQWKRLHLSLQELLAWLQLKEDELKQQAPIGGDIPTVQKQNDVHRTFKRELKT 2854
Query: 61 KRAIIENSILSGRQYLNEASLTDL 84
K +I N++ + R +L + + L
Sbjct: 2855 KEPVIMNALETVRLFLADQPVEGL 2878
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 17 LRELSDWVFRKDAELSRLG--PIGGDINVLQKQEDDHRAFRRQLEDKRAII 65
L +L+DW+ + + ++ P+G D+ L++Q ++H+AF+ LE ++ +
Sbjct: 459 LAQLADWLTKTEERTKKIDSEPLGPDLEDLKRQVEEHKAFQDDLEQEQVKV 509
>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2
Length = 3433
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 3 LESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKR 62
LE+++E WN LL++L EL W+ KD EL + PIGGD+ LQ Q D +A RR+L++K
Sbjct: 2554 LEASAEKWNRLLMSLEELIKWLNMKDEELKKQMPIGGDVPALQLQYDHCKALRRELKEKE 2613
Query: 63 AIIENSILSGRQYL 76
+ N++ R +L
Sbjct: 2614 YSVLNAVDQARVFL 2627
>sp|Q13474|DRP2_HUMAN Dystrophin-related protein 2 OS=Homo sapiens GN=DRP2 PE=2 SV=2
Length = 957
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 52/83 (62%)
Query: 2 RLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDK 61
RLE+ S+H L L L+E+ DW+ +KD ELS P+ GD+ ++Q++++ H AF +++ +
Sbjct: 96 RLEAFSDHSGKLQLPLQEIIDWLSQKDEELSAQLPLQGDVALVQQEKETHAAFMEEVKSR 155
Query: 62 RAIIENSILSGRQYLNEASLTDL 84
I + + S + +L++ +L
Sbjct: 156 GPYIYSVLESAQAFLSQHPFEEL 178
>sp|Q9EPA0|DRP2_RAT Dystrophin-related protein 2 OS=Rattus norvegicus GN=Drp2 PE=1 SV=1
Length = 957
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 50/77 (64%)
Query: 2 RLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDK 61
RLE+ S+H L L L+E+ DW+ +KD ELS P+ GD+ ++Q++++ H AF +++ K
Sbjct: 96 RLEAFSDHSGKLQLPLQEIIDWLSQKDEELSAQLPLQGDVALVQQEKETHAAFMEEVKSK 155
Query: 62 RAIIENSILSGRQYLNE 78
I + + S + +L++
Sbjct: 156 GPYIYSVLESAQAFLSQ 172
>sp|Q05AA6|DRP2_MOUSE Dystrophin-related protein 2 OS=Mus musculus GN=Drp2 PE=1 SV=1
Length = 957
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%)
Query: 2 RLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDK 61
RLE+ S+ L L LRE+ DW+ +KD ELS P+ GD+ ++Q++++ H AF +++ K
Sbjct: 96 RLEAFSDLSGKLQLPLREIIDWLSQKDEELSAQLPLQGDVALVQQEKETHAAFMEEVKSK 155
Query: 62 RAIIENSILSGRQYLNE 78
I + + S + +L++
Sbjct: 156 GPYISSVLESAQAFLSQ 172
>sp|Q03001|DYST_HUMAN Dystonin OS=Homo sapiens GN=DST PE=1 SV=4
Length = 7570
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 38/60 (63%)
Query: 17 LRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL 76
L+ L DW++R + +L+ P+ GDI+++ D+H+AF+++L + + ++ S R+ +
Sbjct: 6823 LQALIDWLYRVEPQLAEDQPVHGDIDLVMNLIDNHKAFQKELGKRTSSVQALKRSARELI 6882
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLE 59
+RE+ D EL + P+G D LQKQ++ +AF ++LE
Sbjct: 5179 TIREMFSQFAEFDDELDSMAPVGRDAETLQKQKETIKAFLKKLE 5222
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 18 RELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL 76
R+ W+ K E ++ PI ++VL+ DH+ F + L + + E +I G L
Sbjct: 4856 RDFQAWLDTKKEEQNKSHPISAKLDVLESLIKDHKDFSKTLTAQSHMYEKTIAEGENLL 4914
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 17 LRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQ 57
L+ + DWV +L+ + PIG D+ +++Q ++ + F+ +
Sbjct: 6276 LQAVFDWVDIAGGKLASMSPIGTDLETVKQQIEELKQFKSE 6316
>sp|D3ZHV2|MACF1_RAT Microtubule-actin cross-linking factor 1 OS=Rattus norvegicus
GN=Macf1 PE=1 SV=1
Length = 5430
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 17 LRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL 76
L+ L DW+++ + +L+ P+ GD++++ D H+ F+++L + ++ SGR+ +
Sbjct: 4712 LQALVDWLYKVEPQLAEDQPVHGDLDLVMNLMDAHKVFQKELGKRTGTVQVLKRSGRELI 4771
Query: 77 NEASLTDLT 85
E+S D T
Sbjct: 4772 -ESSRDDTT 4779
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
+LE ++ H +L W+ K+ + LGP+ D N+L Q+ + ++ E
Sbjct: 2503 KQLEESASHLACFQAAESQLRPWLMEKELMMGVLGPLSIDPNMLNAQKQQVQFMLKEFEA 2562
Query: 61 KR 62
+R
Sbjct: 2563 RR 2564
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
L+ + DW+ L + P+G D+N ++ Q ++ + F+ ++ ++ +E G
Sbjct: 4163 TLQAMFDWLDNTVIRLCTMPPVGTDLNTVKDQLNEMKEFKVEVYQQQIEMEKLNHQGELM 4222
Query: 76 LNEASLTDLTD 86
L +A TD TD
Sbjct: 4223 LKKA--TDETD 4231
>sp|Q9QXZ0|MACF1_MOUSE Microtubule-actin cross-linking factor 1 OS=Mus musculus GN=Macf1
PE=1 SV=2
Length = 7354
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 17 LRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL 76
L+ L DW+++ + +L+ P+ GD++++ D H+ F+++L + ++ SGR+ +
Sbjct: 6626 LQALVDWLYKVEPQLAEDQPVHGDLDLVMNLMDAHKVFQKELGKRTGTVQVLKRSGRELI 6685
Query: 77 NEASLTDLT 85
E S D T
Sbjct: 6686 -EGSRDDTT 6693
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
L+ + DW+ +L + P+G D+N ++ Q ++ + F+ ++ ++ +E G
Sbjct: 6077 TLQAMFDWLDNTVIKLCTMPPVGTDLNTVKDQLNEMKEFKVEVYQQQIEMEKLNHQGELM 6136
Query: 76 LNEASLTDLTD 86
L +A TD TD
Sbjct: 6137 LKKA--TDETD 6145
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 20 LSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL 76
L +W+ + L G + D LQ D H+ F +++E+KR + ++ G L
Sbjct: 6737 LLEWLSEAEQTLRFRGALPDDTEALQSLIDTHKEFMKKVEEKRVDVNTAVAMGEAIL 6793
>sp|Q91ZU6|DYST_MOUSE Dystonin OS=Mus musculus GN=Dst PE=1 SV=1
Length = 7389
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 17 LRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL 76
L+ L DW++R + +L+ P+ GDI+++ D+H+ F+++L + + ++ S R+ +
Sbjct: 6641 LQALIDWLYRVEPQLAEDQPVHGDIDLVMSLIDNHKVFQKELGKRTSSVQALKRSARELI 6700
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
+LE +S + +L W+ K+ +S LGP+ D N+L Q+ + ++ +
Sbjct: 4544 QKLEESSNNLTQFQTTEAQLKQWLMEKELMVSVLGPLSIDPNMLNTQKQQVQILLQEFDT 4603
Query: 61 KRAIIENSILSGRQYLN 77
++ E +G+ L+
Sbjct: 4604 RKPQYEQLTAAGQGILS 4620
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 35/65 (53%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
L L++W+ + +L+ PIG L++Q H+A + + ++ ++ ++L+G +
Sbjct: 5435 TLEPLNEWLTAVEKKLANSEPIGTQAPKLEEQISQHKALQEDILLRKQSVDQALLNGLEL 5494
Query: 76 LNEAS 80
L + +
Sbjct: 5495 LKQTT 5499
>sp|Q9UPN3|MACF1_HUMAN Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo
sapiens GN=MACF1 PE=1 SV=4
Length = 7388
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 36/60 (60%)
Query: 17 LRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL 76
L+ L DW+++ + +L+ P+ GD++++ D H+ F+++L + ++ SGR+ +
Sbjct: 6670 LQALVDWLYKVEPQLAEDQPVHGDLDLVMNLMDAHKVFQKELGKRTGTVQVLKRSGRELI 6729
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 2 RLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDK 61
+LE ++ H +L W+ K+ + LGP+ D N+L Q+ + ++ E +
Sbjct: 4571 QLEESASHLACFQAAESQLRPWLMEKELMMGVLGPLSIDPNMLNAQKQQVQFMLKEFEAR 4630
Query: 62 RAIIENSILSGRQYLNEASLTDLT 85
R + LNEA+ LT
Sbjct: 4631 R--------QQHEQLNEAAQGILT 4646
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
L+ + DW+ +L + P+G D+N ++ Q ++ + F+ ++ ++ +E G
Sbjct: 6121 TLQAMFDWLDNTVIKLCTMPPVGTDLNTVKDQLNEMKEFKVEVYQQQIEMEKLNHQGELM 6180
Query: 76 LNEASLTDLTD 86
L +A TD TD
Sbjct: 6181 LKKA--TDETD 6189
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 20 LSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL 76
L +W+ + L G + D LQ D H+ F +++E+KR + +++ G L
Sbjct: 6781 LLEWLSEAEQTLRFRGALPDDTEALQSLIDTHKEFMKKVEEKRVDVNSAVAMGEVIL 6837
>sp|Q9TW65|DMD_CAEEL Dystrophin-1 OS=Caenorhabditis elegans GN=dys-1 PE=1 SV=2
Length = 3674
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 2 RLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDK 61
RLE + W L L +L WV K + P GG ++ + +Q + +R++E K
Sbjct: 2786 RLEKAEQEWEKLSDGLADLLSWVEAKKQAIMDEQPTGGSLSAVMQQASFVKGLQREIESK 2845
Query: 62 RAIIENSILSGRQYL 76
A ++++ +L
Sbjct: 2846 TANYKSTVEEAHSFL 2860
>sp|Q6FRZ9|ATM_CANGA Serine/threonine-protein kinase TEL1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=TEL1 PE=3 SV=1
Length = 2763
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 3 LESNSEHWNALLLNLRELSDWVFRK----DAELSRLGPIGGDINVLQKQEDDHRAFRRQL 58
E++ EHW+ + N+R D +++ + E+SRL G D L++++ +R R++L
Sbjct: 2089 FENDVEHWDVSINNIRSAPDTIYKVANFLNLEISRLN--GSD--QLKEKQKSYRRTRQEL 2144
Query: 59 EDKRAIIENSILSGRQYL 76
+D +++++S LS + L
Sbjct: 2145 KDIESVVKSSNLSNEELL 2162
>sp|A6SX05|SYM_JANMA Methionine--tRNA ligase OS=Janthinobacterium sp. (strain Marseille)
GN=metG PE=3 SV=1
Length = 700
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 18 RELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAI 64
R +DW DA LSRL + +I L Q + +A R +E AI
Sbjct: 413 RVATDWATSDDAFLSRLRNVASEIQALYDQREYGKALRAIMEQADAI 459
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,523,754
Number of Sequences: 539616
Number of extensions: 969764
Number of successful extensions: 2748
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2644
Number of HSP's gapped (non-prelim): 102
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)