Query psy11245
Match_columns 87
No_of_seqs 62 out of 64
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 21:49:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4286|consensus 100.0 9.8E-31 2.1E-35 223.0 8.9 85 1-85 92-176 (966)
2 smart00150 SPEC Spectrin repea 99.3 2.7E-11 5.9E-16 74.4 8.8 68 12-80 2-69 (101)
3 PF00435 Spectrin: Spectrin re 99.0 3.1E-09 6.8E-14 65.2 8.7 71 9-80 2-72 (105)
4 cd00176 SPEC Spectrin repeats, 99.0 7.8E-09 1.7E-13 69.9 8.9 71 9-80 1-71 (213)
5 cd00176 SPEC Spectrin repeats, 98.9 1.6E-08 3.4E-13 68.4 9.6 77 2-80 101-177 (213)
6 KOG0517|consensus 96.3 0.027 5.8E-07 54.0 9.1 80 1-82 624-704 (2473)
7 KOG0517|consensus 92.0 0.6 1.3E-05 45.4 7.2 70 10-80 1482-1552(2473)
8 KOG0040|consensus 82.9 5.1 0.00011 39.1 7.1 63 18-81 159-222 (2399)
9 KOG0040|consensus 76.2 5.8 0.00013 38.7 5.3 60 21-81 797-856 (2399)
10 PF11943 DUF3460: Protein of u 58.4 15 0.00032 23.1 3.0 33 49-81 5-37 (60)
11 PTZ00421 coronin; Provisional 53.5 30 0.00065 28.7 4.8 32 43-74 461-492 (493)
12 PF06008 Laminin_I: Laminin Do 52.3 97 0.0021 23.2 8.2 72 4-78 181-252 (264)
13 PF01372 Melittin: Melittin; 47.9 25 0.00055 18.8 2.4 19 11-29 7-25 (26)
14 PF12296 HsbA: Hydrophobic sur 43.8 88 0.0019 20.2 5.9 52 9-61 72-124 (124)
15 PF11932 DUF3450: Protein of u 40.5 1.5E+02 0.0033 22.0 6.8 64 16-82 60-125 (251)
16 PF06528 Phage_P2_GpE: Phage P 38.9 21 0.00045 20.6 1.3 21 11-31 14-34 (39)
17 KOG4286|consensus 38.3 1.5E+02 0.0032 27.4 7.0 74 3-76 222-296 (966)
18 PF14131 DUF4298: Domain of un 37.8 65 0.0014 20.9 3.7 29 2-30 4-32 (90)
19 PF02899 Phage_int_SAM_1: Phag 36.4 91 0.002 18.2 5.8 58 7-76 16-77 (84)
20 PRK09731 putative general secr 35.8 1.6E+02 0.0034 21.8 5.8 28 5-32 62-89 (178)
21 PF01506 HCV_NS5a: Hepatitis C 35.0 33 0.00071 17.7 1.6 11 17-27 4-14 (23)
22 PF04456 DUF503: Protein of un 32.0 55 0.0012 21.4 2.6 19 56-74 15-33 (90)
23 KOG4027|consensus 31.0 25 0.00054 26.6 1.0 19 15-33 128-146 (187)
24 COG5646 Uncharacterized conser 28.2 49 0.0011 23.6 2.0 34 12-47 15-48 (126)
25 PF10978 DUF2785: Protein of u 27.1 2E+02 0.0043 20.6 5.1 42 15-58 131-172 (175)
26 PF06761 IcmF-related: Intrace 25.3 1.8E+02 0.0039 22.1 4.8 63 18-83 94-159 (312)
27 TIGR02642 phage_xxxx uncharact 24.4 99 0.0021 23.0 3.2 24 8-31 150-173 (186)
28 PHA02754 hypothetical protein; 24.3 70 0.0015 20.5 2.0 13 49-61 14-26 (67)
29 cd07048 BMC_PduB_repeat2 1,2-p 22.6 70 0.0015 20.5 1.8 17 37-53 48-64 (70)
30 PF02020 W2: eIF4-gamma/eIF5/e 22.6 88 0.0019 19.6 2.3 23 8-30 57-79 (84)
31 PF07521 RMMBL: RNA-metabolisi 22.5 25 0.00053 19.8 -0.3 22 17-40 20-41 (43)
32 PF12548 DUF3740: Sulfatase pr 22.2 1.1E+02 0.0023 22.0 2.9 25 41-65 115-139 (145)
33 PF05914 RIB43A: RIB43A; Inte 21.6 81 0.0018 25.7 2.4 18 35-52 36-53 (379)
34 cd00522 Hemerythrin Hemerythri 21.4 2.4E+02 0.0053 18.3 6.9 50 11-64 36-85 (113)
35 PF12312 NeA_P2: Nepovirus sub 20.8 72 0.0016 25.0 1.8 61 18-85 9-72 (258)
36 COG3189 Uncharacterized conser 20.6 2.3E+02 0.0051 20.0 4.2 50 5-70 36-86 (117)
37 PF08656 DASH_Dad3: DASH compl 20.4 1.3E+02 0.0028 19.6 2.8 18 55-72 43-60 (78)
No 1
>KOG4286|consensus
Probab=99.97 E-value=9.8e-31 Score=223.04 Aligned_cols=85 Identities=45% Similarity=0.759 Sum_probs=83.2
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhhcCC
Q psy11245 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYLNEAS 80 (87)
Q Consensus 1 ~rLE~~~~~w~~L~~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl~~~p 80 (87)
+|||+++++|++|+++|+|||.||..||++|++|+||||||++||+|.++|+|||||||+|+|+|+|++++||.||+++|
T Consensus 92 ~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s~~e~a~~fl~~~p 171 (966)
T KOG4286|consen 92 SHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMSTLETARIFLTEQP 171 (966)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc
Q psy11245 81 LTDLT 85 (87)
Q Consensus 81 l~~~~ 85 (87)
|++++
T Consensus 172 ~e~~e 176 (966)
T KOG4286|consen 172 LEGLE 176 (966)
T ss_pred Ccchh
Confidence 99864
No 2
>smart00150 SPEC Spectrin repeats.
Probab=99.31 E-value=2.7e-11 Score=74.43 Aligned_cols=68 Identities=25% Similarity=0.393 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhhcCC
Q psy11245 12 ALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYLNEAS 80 (87)
Q Consensus 12 ~L~~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl~~~p 80 (87)
+|...+.+|+.||..++..|. ..|+|+|++.|+.++..|++|++++..+++.|.++...|+.|+..+|
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~-~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~ 69 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLA-SEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGH 69 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 478889999999999997665 58999999999999999999999999999999999999999996544
No 3
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.03 E-value=3.1e-09 Score=65.19 Aligned_cols=71 Identities=23% Similarity=0.448 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhhcCC
Q psy11245 9 HWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYLNEAS 80 (87)
Q Consensus 9 ~w~~L~~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl~~~p 80 (87)
.|.+|...+.++..||..++..|....+ |+|+..++.++..|+.|+.++..+++-|..+.+.|..+++.+|
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~-~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~ 72 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEP-GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGP 72 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTH-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5889999999999999999999955444 9999999999999999999999999999999999999986554
No 4
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=98.95 E-value=7.8e-09 Score=69.91 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhhcCC
Q psy11245 9 HWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYLNEAS 80 (87)
Q Consensus 9 ~w~~L~~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl~~~p 80 (87)
.|.+|...+++++.||..++..|....|.+ |+..+++++..|++|++++..+.+.|..+...|+.++...+
T Consensus 1 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~-d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~ 71 (213)
T cd00176 1 KLQQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH 71 (213)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC
Confidence 378999999999999999999999998877 99999999999999999999999999999999999997654
No 5
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=98.92 E-value=1.6e-08 Score=68.42 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=70.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhhcCC
Q psy11245 2 RLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYLNEAS 80 (87)
Q Consensus 2 rLE~~~~~w~~L~~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl~~~p 80 (87)
+|+...+.|..++...+ +..|+..++..|....|++ |++.+++++..|++|++++..+++.|.++.+.|..++...+
T Consensus 101 ~L~~~~~~~~~~~~~~~-l~~wl~~~e~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (213)
T cd00176 101 RLEEALDLQQFFRDADD-LEQWLEEKEAALASEDLGK-DLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGH 177 (213)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCC
Confidence 68888999999988776 9999999999999877766 99999999999999999999999999999999999995444
No 6
>KOG0517|consensus
Probab=96.31 E-value=0.027 Score=54.03 Aligned_cols=80 Identities=21% Similarity=0.428 Sum_probs=68.0
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh-hcC
Q psy11245 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL-NEA 79 (87)
Q Consensus 1 ~rLE~~~~~w~~L~~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl-~~~ 79 (87)
+|||.+-.-|. |.--..|--.||.-|+.=++ -.-.|+|+.+|..-...||+|..||..+.+....++..|+.++ ..|
T Consensus 624 arLE~sr~l~~-F~~d~~EeEaWlkEkeqi~~-sa~~g~DLs~v~~ll~kHKalE~E~~~~~a~~~~~~~~G~~Lvae~~ 701 (2473)
T KOG0517|consen 624 ARLEESRRLWQ-FLWDVEEEEAWLKEKEQILS-SADTGRDLSSVLRLLQKHKALEDEMRGRDAHLKQMIREGEELVAEGH 701 (2473)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-cccccccHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC
Confidence 47888877775 45567888999998876555 5778999999999999999999999999999999999999999 455
Q ss_pred CCC
Q psy11245 80 SLT 82 (87)
Q Consensus 80 pl~ 82 (87)
|-+
T Consensus 702 pg~ 704 (2473)
T KOG0517|consen 702 PGS 704 (2473)
T ss_pred CCC
Confidence 533
No 7
>KOG0517|consensus
Probab=91.99 E-value=0.6 Score=45.42 Aligned_cols=70 Identities=10% Similarity=0.289 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhh-cCC
Q psy11245 10 WNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYLN-EAS 80 (87)
Q Consensus 10 w~~L~~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl~-~~p 80 (87)
|-+|.--+..=+-||..+-| +...+..|-++++||.-...|+.++.|++.|+|-|..++..|+.+++ .||
T Consensus 1482 ~hQf~~dvddE~~WV~ErlP-~A~s~d~G~~L~~~q~l~KK~q~Lq~EI~~H~prI~~vl~~gq~Li~~~h~ 1552 (2473)
T KOG0517|consen 1482 LHQFVRDVDDELLWVAERLP-LASSTDYGENLQTVQSLHKKNQTLQAEIKGHQPRINDVLERGQSLIDSGHP 1552 (2473)
T ss_pred HHHHHHhhhHHHHHHHhhCc-cCCchhhccChHHHHHHHHHhHHHHHHHHhcchHHHHHHHHhHHHHhcCCc
Confidence 44444444444555544433 33445568899999999999999999999999999999999999884 444
No 8
>KOG0040|consensus
Probab=82.93 E-value=5.1 Score=39.10 Aligned_cols=63 Identities=11% Similarity=0.289 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh-hcCCC
Q psy11245 18 RELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL-NEASL 81 (87)
Q Consensus 18 qELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl-~~~pl 81 (87)
.+++.|+.-|+.=.+. ..+|-|+.-|.-.......|+.||.+++..|..+-..|--++ .+||=
T Consensus 159 ~~i~~wi~dke~~~t~-~e~g~d~e~~evl~~kf~~f~~~~~~~e~rv~evnq~a~~~~~e~h~e 222 (2399)
T KOG0040|consen 159 EDILEWIGDKEAIVTS-EELGQDLEHVEVLQKKFEDFQKELAAHEYRVNEVNQYADKLVEEGHPE 222 (2399)
T ss_pred HHHHHHhccchheeeH-HHhcccHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHcCCCc
Confidence 5799999999876654 468999998888888888999999999999999999999998 67773
No 9
>KOG0040|consensus
Probab=76.21 E-value=5.8 Score=38.73 Aligned_cols=60 Identities=17% Similarity=0.307 Sum_probs=50.6
Q ss_pred HHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhhcCCC
Q psy11245 21 SDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYLNEASL 81 (87)
Q Consensus 21 l~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl~~~pl 81 (87)
..|++.|++- ++-.-.|-|+-.|++|...|.+...+++.+.|.|.+++..|...+.++++
T Consensus 797 ~awi~E~E~~-a~st~~gkdlI~~qnl~~k~q~~~~~ia~he~ri~~i~~r~~~m~~~~~f 856 (2399)
T KOG0040|consen 797 EAWIREKEPI-AASTNRGKDLIGVQNLLKKHQALLAEIANHEPRIQEVTSRGNKMVEEGHF 856 (2399)
T ss_pred HHHHhhcchh-ccchhcchhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc
Confidence 3587776653 34455788999999999999999999999999999999999998866665
No 10
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=58.38 E-value=15 Score=23.10 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHhhhcCCC
Q psy11245 49 DDHRAFRRQLEDKRAIIENSILSGRQYLNEASL 81 (87)
Q Consensus 49 ~~Hk~f~rEL~~k~~~V~~~L~s~r~fl~~~pl 81 (87)
.+|.-|+++|+.+.|-+..-=..||.+|=+-|+
T Consensus 5 Se~TqFl~~lk~~~Pele~~Q~~GRallWDk~~ 37 (60)
T PF11943_consen 5 SEITQFLNQLKAKHPELEEEQRAGRALLWDKPQ 37 (60)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHhhHHhcCCCC
Confidence 468899999999999999999999999933354
No 11
>PTZ00421 coronin; Provisional
Probab=53.49 E-value=30 Score=28.69 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q psy11245 43 VLQKQEDDHRAFRRQLEDKRAIIENSILSGRQ 74 (87)
Q Consensus 43 ~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~ 74 (87)
.|++|.+.-+..|.+|..|+..|+.+|+.-+.
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (493)
T PTZ00421 461 KLRTQHEEIKRCREALQKKESIVMETLEKIQS 492 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47889999999999999999999999987653
No 12
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=52.28 E-value=97 Score=23.15 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=52.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhhc
Q psy11245 4 ESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYLNE 78 (87)
Q Consensus 4 E~~~~~w~~L~~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl~~ 78 (87)
++-.+.-+.+..-|++|-+||..+......=. +=....+.-+.++..=+.+|.+....|...|..|+.+|.+
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~---~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAE---DLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888888888887765554211 1123345556677788889999999999999999999954
No 13
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=47.89 E-value=25 Score=18.80 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhH
Q psy11245 11 NALLLNLRELSDWVFRKDA 29 (87)
Q Consensus 11 ~~L~~sLqELl~Wl~~kd~ 29 (87)
+-|-..|--|++|+.+|..
T Consensus 7 kvla~~LP~lISWIK~kr~ 25 (26)
T PF01372_consen 7 KVLATGLPTLISWIKNKRQ 25 (26)
T ss_dssp HHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHHHhc
Confidence 3456678899999998865
No 14
>PF12296 HsbA: Hydrophobic surface binding protein A; InterPro: IPR021054 Hydrophobic surface binding proteins are typically between 171 to 275 amino acids in length. Although the HsbA amino acid sequence suggests that HsbA may be hydrophilic, HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) surfaces in the presence of NaCl or CaCl2. When HsbA was adsorbed on the hydrophobic PBSA surfaces, it promoted PBSA degradation via the CutL1 polyesterase. CutL1 interacts directly with HsbA attached to the hydrophobic QCM electrode surface. These results suggest that when HsbA is adsorbed onto the PBSA surface, it recruits CutL1, and that when CutL1 is accumulated on the PBSA surface, it stimulates PBSA degradation []. This entry is also characterised by a antigenic cell wall galactomannoprotein in Aspergillus fumigatus, which is a protein of 284 amino acid residues. It contains a serine- and threonine-rich region for O glycosylation, a signal peptide, and a putative glycosylphosphatidyl inositol attachment signal sequence. Ultrastructural analysis showed that the protein is present in the cell walls of hyphae and conidia []. ; PDB: 3L1N_A.
Probab=43.78 E-value=88 Score=20.20 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCH-HHHHHHHHHHHHHHHHhhHh
Q psy11245 9 HWNALLLNLRELSDWVFRKDAELSRLGPIGGDI-NVLQKQEDDHRAFRRQLEDK 61 (87)
Q Consensus 9 ~w~~L~~sLqELl~Wl~~kd~eL~~q~PigGDv-~~Vq~Q~~~Hk~f~rEL~~k 61 (87)
.-+.|......+++.|..|.+.+.+ .-+++.+ ..++.+...+..|.-.|.+|
T Consensus 72 ~~~~l~~~i~~~l~~l~~Kk~~f~~-~g~~~~v~~~L~~l~~~~~~l~~al~~K 124 (124)
T PF12296_consen 72 AVQTLQPDIQDALNALIAKKPAFDA-AGLCSVVRADLQDLKTASDALSDALVSK 124 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHH-TT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457888889999999999999988 3344333 45667777777777766654
No 15
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=40.55 E-value=1.5e+02 Score=21.99 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh-hcCCCC
Q psy11245 16 NLRELSDWVFRKDAELSRLG-PIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL-NEASLT 82 (87)
Q Consensus 16 sLqELl~Wl~~kd~eL~~q~-PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl-~~~pl~ 82 (87)
.|..=++|+......+.++. -....+..+++|++....-+++|. |++...++.-..|+ .+.||.
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~---p~m~~m~~~L~~~v~~d~Pf~ 125 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV---PLMEQMIDELEQFVELDLPFL 125 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCC
Confidence 33444566666666665331 123345667888888888888886 99999999999999 577764
No 16
>PF06528 Phage_P2_GpE: Phage P2 GpE; InterPro: IPR009493 This entry is represented by Burkholderia phage phiE202, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.
Probab=38.91 E-value=21 Score=20.60 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHH
Q psy11245 11 NALLLNLRELSDWVFRKDAEL 31 (87)
Q Consensus 11 ~~L~~sLqELl~Wl~~kd~eL 31 (87)
.-..++|-||++|..++...-
T Consensus 14 e~~~m~l~El~~Wre~A~~R~ 34 (39)
T PF06528_consen 14 EMDAMSLDELMDWRERARRRS 34 (39)
T ss_pred HHhcCCHHHHHHHHHHHHHHh
Confidence 345678999999998876543
No 17
>KOG4286|consensus
Probab=38.34 E-value=1.5e+02 Score=27.41 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=58.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCC-CHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh
Q psy11245 3 LESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGG-DINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL 76 (87)
Q Consensus 3 LE~~~~~w~~L~~sLqELl~Wl~~kd~eL~~q~PigG-Dv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl 76 (87)
.+...+..-.|+.++.||-.=|...+-....-.|||. -++.++.-++.-++|+.|+..-.-.|..+-+.|++++
T Consensus 222 v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ql~ 296 (966)
T KOG4286|consen 222 IDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLT 296 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHHHhh
Confidence 3444555555666777777777777777777888875 3578999999999999999999999999999999987
No 18
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=37.84 E-value=65 Score=20.91 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=17.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhHH
Q psy11245 2 RLESNSEHWNALLLNLRELSDWVFRKDAE 30 (87)
Q Consensus 2 rLE~~~~~w~~L~~sLqELl~Wl~~kd~e 30 (87)
++|+.-++|.+++..|++.++.+...-+.
T Consensus 4 eme~~y~~~~~~l~~le~~l~~~~~~~~~ 32 (90)
T PF14131_consen 4 EMEKIYNEWCELLEELEEALEKWQEAQPD 32 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666665554433
No 19
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=36.38 E-value=91 Score=18.21 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHh-hhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhh
Q psy11245 7 SEHWNALLLNLRELSDWVFR-KDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED---KRAIIENSILSGRQYL 76 (87)
Q Consensus 7 ~~~w~~L~~sLqELl~Wl~~-kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~---k~~~V~~~L~s~r~fl 76 (87)
..-+..+...|..+++|+.. ....+. .| -.++...|...+.. +...+...+-..|.|.
T Consensus 16 ~~T~~~Y~~~l~~f~~~~~~~~~~~~~----------~i--~~~~v~~f~~~~~~~~~s~~T~~~~~~alr~f~ 77 (84)
T PF02899_consen 16 PNTIRSYRRDLRRFIRWLEEHGIIDWE----------DI--TEEDVRDFLEYLAKEGLSPSTINRRLSALRAFF 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-CGG----------G----HHHHHHHHHHHHCTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhh----------hh--hhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 45578899999999999988 222222 11 33455788888876 5666666777777765
No 20
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=35.77 E-value=1.6e+02 Score=21.83 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHh
Q psy11245 5 SNSEHWNALLLNLRELSDWVFRKDAELS 32 (87)
Q Consensus 5 ~~~~~w~~L~~sLqELl~Wl~~kd~eL~ 32 (87)
...+.|.+...+.++++.|+..+-+++.
T Consensus 62 ~~~~~a~~~l~~~~qll~wvq~~a~~i~ 89 (178)
T PRK09731 62 ERIEQQETMLQQLVAMNTRLKSAAPDII 89 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999985
No 21
>PF01506 HCV_NS5a: Hepatitis C virus non-structural 5a protein membrane anchor; InterPro: IPR002868 The molecular function of the non-structural 5a viral protein is uncertain. The NS5a protein is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA-dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ].; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1R7F_A 1R7E_A 1R7C_A 1R7G_A 1R7D_A.
Probab=35.03 E-value=33 Score=17.69 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=9.0
Q ss_pred HHHHHHHHHhh
Q psy11245 17 LRELSDWVFRK 27 (87)
Q Consensus 17 LqELl~Wl~~k 27 (87)
|.+|.+|+.+.
T Consensus 4 l~diWdWvc~~ 14 (23)
T PF01506_consen 4 LWDIWDWVCRV 14 (23)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68899999864
No 22
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=32.04 E-value=55 Score=21.40 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.5
Q ss_pred HHhhHhHHHHHHHHHHHHH
Q psy11245 56 RQLEDKRAIIENSILSGRQ 74 (87)
Q Consensus 56 rEL~~k~~~V~~~L~s~r~ 74 (87)
+-||+|+.+|.+.++..|.
T Consensus 15 ~SLKeKR~vvksl~~klr~ 33 (90)
T PF04456_consen 15 HSLKEKRQVVKSLIDKLRN 33 (90)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHHHHHHHh
Confidence 3589999999999998885
No 23
>KOG4027|consensus
Probab=30.96 E-value=25 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhHHHhh
Q psy11245 15 LNLRELSDWVFRKDAELSR 33 (87)
Q Consensus 15 ~sLqELl~Wl~~kd~eL~~ 33 (87)
..+|.|++||.+.++|+..
T Consensus 128 s~~q~~tswl~rr~pE~~D 146 (187)
T KOG4027|consen 128 STVQQLTSWLRRRNPEFVD 146 (187)
T ss_pred HHHHHHHHHHHhcCccccC
Confidence 4589999999999999984
No 24
>COG5646 Uncharacterized conserved protein [Function unknown]
Probab=28.17 E-value=49 Score=23.60 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHH
Q psy11245 12 ALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQ 47 (87)
Q Consensus 12 ~L~~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q 47 (87)
.+...++||..|+..|.+|+..+.-.+ .|+.-.|
T Consensus 15 e~r~r~~elr~~ik~~~Pea~e~Is~~--~P~f~~~ 48 (126)
T COG5646 15 ELRERTEELRTWIKAKFPEAAEEISYN--LPMFTNQ 48 (126)
T ss_pred HHHHHHHHHHHHHHHHCcchhhhhhhc--CcceecC
Confidence 355679999999999999998776555 4444333
No 25
>PF10978 DUF2785: Protein of unknown function (DUF2785); InterPro: IPR021247 Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.
Probab=27.07 E-value=2e+02 Score=20.56 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHh
Q psy11245 15 LNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQL 58 (87)
Q Consensus 15 ~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL 58 (87)
.+-++++.||...-..+..+.|.-+. .--.+..+-|.|.+.|
T Consensus 131 l~~~~~~~wl~~~~~~l~~~~~~~~~--~~~~~~~N~~~fL~sL 172 (175)
T PF10978_consen 131 LYQEELLSWLKSWRQDLPTQRPPYSE--ADWYRFSNIKRFLRSL 172 (175)
T ss_pred CCHHHHHHHHHHHHHHhhhcccccch--HHHHHHHHHHHHHHHH
Confidence 35578999999998888888776655 3334467777787765
No 26
>PF06761 IcmF-related: Intracellular multiplication and human macrophage-killing; InterPro: IPR009612 This entry represents a conserved region within several bacterial proteins that resemble ImcF, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation, resulting in increased adherence to epithelial cells and increased conjugation frequency. Note that many entry members are hypothetical proteins.
Probab=25.33 E-value=1.8e+02 Score=22.11 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHH---HhhHhHHHHHHHHHHHHHhhhcCCCCC
Q psy11245 18 RELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRR---QLEDKRAIIENSILSGRQYLNEASLTD 83 (87)
Q Consensus 18 qELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~r---EL~~k~~~V~~~L~s~r~fl~~~pl~~ 83 (87)
+.|..|+.. .+.+..|...+-+.+++++..|-...- .-...-+.=...+..||..|...|+.+
T Consensus 94 ~~l~~w~~~---~w~~~~~~~~~~~~~~~~l~~hl~~ll~~~~~~~~~~~d~~LV~~AR~~L~~~~~~~ 159 (312)
T PF06761_consen 94 DFLKAWLAQ---DWQEQYPGQPDQAELRAQLAFHLDALLGDAHPQPPIPPDDELVAQARANLSRVPLAE 159 (312)
T ss_pred HHHHHHHHH---HHHHhCCCCcchhHHHHHHHHHHHHHhhccCccCCCCCCHHHHHHHHHHHHcCCchh
Confidence 456677765 677888888776667888888876555 222334455678899999998777653
No 27
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=24.42 E-value=99 Score=23.03 Aligned_cols=24 Identities=17% Similarity=0.479 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Q psy11245 8 EHWNALLLNLRELSDWVFRKDAEL 31 (87)
Q Consensus 8 ~~w~~L~~sLqELl~Wl~~kd~eL 31 (87)
+.|.+|...+.++++||+..+-+.
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~A 173 (186)
T TIGR02642 150 DNWPQVVTSVRAQVDALRRHESDA 173 (186)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999887654
No 28
>PHA02754 hypothetical protein; Provisional
Probab=24.26 E-value=70 Score=20.46 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhHh
Q psy11245 49 DDHRAFRRQLEDK 61 (87)
Q Consensus 49 ~~Hk~f~rEL~~k 61 (87)
.+.+.|||||++.
T Consensus 14 K~Fke~MRelkD~ 26 (67)
T PHA02754 14 KDFKEAMRELKDI 26 (67)
T ss_pred hHHHHHHHHHHHH
Confidence 4567899999975
No 29
>cd07048 BMC_PduB_repeat2 1,2-propanediol utilization protein B (PduB), Bacterial Micro-Compartment (BMC) domain repeat 2. PduB proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduB might form hexamers and further assemble into the flat facets of the polyhedral outer shell of the pdu organelles at present no experimental evidence directly supports this view. PduB proteins contain two tandem BMC domains repeats. This CD contains repeat 2 (the second BMC domain of PduB).
Probab=22.61 E-value=70 Score=20.46 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy11245 37 IGGDINVLQKQEDDHRA 53 (87)
Q Consensus 37 igGDv~~Vq~Q~~~Hk~ 53 (87)
|.|||.+|+.-.+.-+.
T Consensus 48 vtGDvaAV~aAv~ag~~ 64 (70)
T cd07048 48 ISGDSGAVRQALIAARE 64 (70)
T ss_pred EEecHHHHHHHHHHHHH
Confidence 56999999988776653
No 30
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=22.55 E-value=88 Score=19.55 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q psy11245 8 EHWNALLLNLRELSDWVFRKDAE 30 (87)
Q Consensus 8 ~~w~~L~~sLqELl~Wl~~kd~e 30 (87)
+.-.++....+.+++||...+++
T Consensus 57 ~~~~~~r~~~~~fi~WL~eaeeE 79 (84)
T PF02020_consen 57 EGRAKVRKQAQPFIEWLEEAEEE 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred hhHHHHHHHHHHHHHHHhccCcc
Confidence 44456888999999999988876
No 31
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=22.51 E-value=25 Score=19.78 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhHHHhhcCCCCCC
Q psy11245 17 LRELSDWVFRKDAELSRLGPIGGD 40 (87)
Q Consensus 17 LqELl~Wl~~kd~eL~~q~PigGD 40 (87)
-++|++|+..-++ ..-.||.|+
T Consensus 20 ~~~L~~~i~~~~p--~~vilVHGe 41 (43)
T PF07521_consen 20 REELLEFIEQLNP--RKVILVHGE 41 (43)
T ss_dssp HHHHHHHHHHHCS--SEEEEESSE
T ss_pred HHHHHHHHHhcCC--CEEEEecCC
Confidence 4688889888877 666777776
No 32
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=22.19 E-value=1.1e+02 Score=21.95 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHH
Q psy11245 41 INVLQKQEDDHRAFRRQLEDKRAII 65 (87)
Q Consensus 41 v~~Vq~Q~~~Hk~f~rEL~~k~~~V 65 (87)
+.++|.++++-|.+|+-|+.++|-.
T Consensus 115 Ie~Lq~Ki~~LKeiR~hLk~~RP~~ 139 (145)
T PF12548_consen 115 IETLQDKIKNLKEIRGHLKKKRPEE 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchh
Confidence 4678999999999999999999854
No 33
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=21.60 E-value=81 Score=25.68 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy11245 35 GPIGGDINVLQKQEDDHR 52 (87)
Q Consensus 35 ~PigGDv~~Vq~Q~~~Hk 52 (87)
-=||+|++++..|...-+
T Consensus 36 R~iGvD~~aL~~Qv~Ekk 53 (379)
T PF05914_consen 36 RTIGVDVEALDRQVEEKK 53 (379)
T ss_pred hhhCcCHHHHHHHHHHHH
Confidence 459999999999986654
No 34
>cd00522 Hemerythrin Hemerythrin (Hr) is a non-heme diiron oxygen transport protein found in four marine invertebrate phyla including priapulida, brachiopoda, sipunculida, and annelida, as well as in protozoa. Myohemerythrin (Mhr), a hemerythrin homolog, is found in the muscle tissue of sipunculids as well as in polycheate and oligocheate annelids. In addition to oxygen transport, Mhr proteins are involved in cadmium fixation and host anti-bacterial defense. Hr and Mhr proteins have the same "four alpha helix bundle" motif and active site structure. Hr forms oligomers, the octameric form being most prevalent, while Mhr is monomeric.
Probab=21.42 E-value=2.4e+02 Score=18.28 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHH
Q psy11245 11 NALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAI 64 (87)
Q Consensus 11 ~~L~~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~ 64 (87)
..+...|.+-+.-=..-++.+.+..- .|.+..-...|+.|..++..-...
T Consensus 36 ~~~l~~L~~y~~~HF~~EE~~M~~~~----yp~~~~H~~~H~~f~~~~~~~~~~ 85 (113)
T cd00522 36 ADNLKELVDYTVKHFKDEEALMEAAG----YPDYEEHKKIHEDFVEKVGGLKAP 85 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666678888886543 345777889999999999875443
No 35
>PF12312 NeA_P2: Nepovirus subgroup A polyprotein ; InterPro: IPR021081 Proteins in this entry are typically between 259 and 1110 amino acids in length. They are found in association with PF03688 from PFAM, PF03689 from PFAM and PF03391 from PFAM. This entry includes RNA2 polyprotein (Protein 2A) which is implicated in RNA2 replication.
Probab=20.76 E-value=72 Score=25.03 Aligned_cols=61 Identities=16% Similarity=0.301 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh---hcCCCCCCc
Q psy11245 18 RELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL---NEASLTDLT 85 (87)
Q Consensus 18 qELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~~V~~~L~s~r~fl---~~~pl~~~~ 85 (87)
+-|--|..-|+. -+||.|+---+-++ --.||.++|+.-..-.+-....|+|- .-+|++++.
T Consensus 9 RRLacwa~gkn~------hlGGsveqWL~~i~-D~sFR~~VKedVq~nR~~ptairmfs~kvg~Gpid~p~ 72 (258)
T PF12312_consen 9 RRLACWAAGKNP------HLGGSVEQWLAAIE-DPSFRQTVKEDVQENRNEPTAIRMFSWKVGFGPIDNPE 72 (258)
T ss_pred chhhhhhccCCC------CcCccHHHHHHHhc-CHHHHHHHHHHHHhhhccccceeeeeeccccCCCCCcc
Confidence 345556655554 46999998888888 78999999865443333444556664 567777664
No 36
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=20.56 E-value=2.3e+02 Score=19.98 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhhHhHH-HHHHHHH
Q psy11245 5 SNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRA-IIENSIL 70 (87)
Q Consensus 5 ~~~~~w~~L~~sLqELl~Wl~~kd~eL~~q~PigGDv~~Vq~Q~~~Hk~f~rEL~~k~~-~V~~~L~ 70 (87)
+..+-|-+....--||-.|..-.. +.=.++.+.|+.||.+..+ -+...++
T Consensus 36 ~~~D~W~KdiAPS~eLRkwf~Hdp----------------~~w~~F~~rY~~EL~~~~~~~l~~L~~ 86 (117)
T COG3189 36 LALDLWLKDIAPSTELRKWFHHDP----------------KKWDEFRERYRAELNAQDAQALEDLLD 86 (117)
T ss_pred hhHHHHHhhcCCCHHHHHHHcCCH----------------HHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 466778888877778888875433 2345788999999976655 3444333
No 37
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=20.41 E-value=1.3e+02 Score=19.62 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.1
Q ss_pred HHHhhHhHHHHHHHHHHH
Q psy11245 55 RRQLEDKRAIIENSILSG 72 (87)
Q Consensus 55 ~rEL~~k~~~V~~~L~s~ 72 (87)
+|+|+.|-++|...++.+
T Consensus 43 LR~LE~K~glV~TL~KaS 60 (78)
T PF08656_consen 43 LRELERKIGLVYTLFKAS 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999877653
Done!