RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11245
(87 letters)
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats.
Length = 101
Score = 28.4 bits (64), Expect = 0.23
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
+ EL W+ K+ L+ +G D+ ++ H AF +LE +E G Q
Sbjct: 6 DADELEAWLEEKEQLLASE-DLGKDLESVEALLKKHEAFEAELEAHEERVEALNELGEQL 64
Query: 76 LNE 78
+ E
Sbjct: 65 IEE 67
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved
in cytoskeletal structure; family members include
spectrin, alpha-actinin and dystrophin; the spectrin
repeat forms a three helix bundle with the second helix
interrupted by proline in some sequences; the repeats
are independent folding units; tandem repeats are found
in differing numbers and arrange in an antiparallel
manner to form dimers; the repeats are defined by a
characteristic tryptophan (W) residue in helix A and a
leucine (L) at the carboxyl end of helix C and separated
by a linker of 5 residues; two copies of the repeat are
present here.
Length = 213
Score = 27.8 bits (62), Expect = 0.51
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
RLE + + +L W+ K+A L+ +G D+ +++ H+ +LE
Sbjct: 100 QRLEEALDLQQ-FFRDADDLEQWLEEKEAALASE-DLGKDLESVEELLKKHKELEEELEA 157
Query: 61 KRAIIENSILSGRQYLNEASLTDLTDT 87
+++ + L E +
Sbjct: 158 HEPRLKSLNELAEELLEEGHPDADEEI 184
>gnl|CDD|177643 PHA03415, PHA03415, putative internal virion protein; Provisional.
Length = 1019
Score = 26.5 bits (58), Expect = 1.7
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 18 RELSDWVFRKDAELSRLGPIGGDINV---LQKQEDDHRAFRRQL 58
R+++D + R+DAE SR G + D N+ + + D+ AF Q
Sbjct: 355 RKVADELARRDAEWSRFGAVMADPNLDPDIARLADESDAFHGQG 398
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 25.3 bits (56), Expect = 4.2
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 10 WNALLL----NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
++A+LL + E + A+L P GG+I V+ ++ D R+ + LE
Sbjct: 38 FDAVLLYWPKHKAEAEFQL----AQLLARLPPGGEIVVVGEKRDGVRSAEKMLEK 88
>gnl|CDD|226056 COG3525, Chb, N-acetyl-beta-hexosaminidase [Carbohydrate transport
and metabolism].
Length = 732
Score = 25.2 bits (55), Expect = 4.8
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQED--DHRAFRRQLEDKRAIIENSILSGR 73
L L DAE L P+ D ++ A+R + DK + L+G
Sbjct: 170 ALNILLR-ELANDAEKG-LSPLQADKYYPNRKGPTLGEEAYRLAINDKAIKVTAHDLAGL 227
Query: 74 QYLNEASLTDLTD 86
Y + +L L
Sbjct: 228 FY-ADGTLLQLDT 239
>gnl|CDD|215562 PLN03078, PLN03078, Putative tRNA pseudouridine synthase;
Provisional.
Length = 513
Score = 25.2 bits (55), Expect = 4.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 25 FRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIE 66
RK + R+G +G D LQKQ D + E + AI +
Sbjct: 68 ARKKKVVLRVGYVGTDYRGLQKQRDLSSLSTIEGELETAIFK 109
>gnl|CDD|203301 pfam05659, RPW8, Arabidopsis broad-spectrum mildew resistance
protein RPW8. This family consists of several
broad-spectrum mildew resistance proteins from
Arabidopsis thaliana. Plant disease resistance (R)
genes control the recognition of specific pathogens and
activate subsequent defence responses. The Arabidopsis
thaliana locus Resistance To Powdery Mildew 8 (RPW8)
contains two naturally polymorphic, dominant R genes,
RPW8.1 and RPW8.2, which individually control
resistance to a broad range of powdery mildew
pathogens. They induce localised, salicylic
acid-dependent defences similar to those induced by R
genes that control specific resistance. Apparently,
broad-spectrum resistance mediated by RPW8 uses the
same mechanisms as specific resistance.
Length = 147
Score = 25.1 bits (55), Expect = 5.2
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 26 RKDAELSRLGPIGGDINVLQKQEDD-----HRAFRRQLEDKRAIIEN 67
R DA + + P+ I+ L K+ DD +R LE +++E
Sbjct: 38 RLDATIESITPLFDQIDKLSKESDDPFRKVIEDLKRLLEKAVSLVEK 84
>gnl|CDD|215918 pfam00435, Spectrin, Spectrin repeat. Spectrin repeat-domains
are found in several proteins involved in cytoskeletal
structure. These include spectrin, alpha-actinin and
dystrophin. The sequence repeat used in this family is
taken from the structural repeat in reference. The
spectrin domain- repeat forms a three helix bundle. The
second helix is interrupted by proline in some
sequences. The repeats are defined by a characteristic
tryptophan (W) residue at position 17 in helix A and a
leucine (L) at 2 residues from the carboxyl end of
helix C. Although the domain occurs in ultiple repeats
along sequences, the domains are actually stable on
their own - ie they act, biophysically, like domains
rather than repeats that along function when
aggregated.
Length = 105
Score = 24.6 bits (54), Expect = 5.8
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIEN 67
+ +L W+ K+A LS G D+ +Q H+A +L + +E
Sbjct: 9 DADDLESWIEEKEALLSS-EDYGKDLESVQALLKKHKALEAELAAHQDRVEA 59
>gnl|CDD|131219 TIGR02164, torA, trimethylamine-N-oxide reductase TorA. This very
narrowly defined family represents TorA, part of a
family of related molybdoenzymes that include biotin
sulfoxide reductases, dimethyl sulfoxide reductases, and
at least two different subfamilies of
trimethylamine-N-oxide reductases. A single enzyme from
the larger family may have more than one activity. TorA
typically is located in the periplasm, has a Tat
(twin-arginine translocation)-dependent signal sequence,
and is encoded in a torCAD operon.
Length = 822
Score = 24.8 bits (54), Expect = 6.9
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 7 SEHWNALLLNLRELSDWV----FRKDAELSRLGPIGGDINVLQKQEDDH 51
+E W ++ + WV FR+D E++ LG G I + ++ +
Sbjct: 599 AEFWKKGYVHFGDGEPWVRHADFREDPEINPLGTPSGLIEIFSRKIAQY 647
>gnl|CDD|227006 COG4659, RnfG, Predicted NADH:ubiquinone oxidoreductase, subunit
RnfG [Energy production and conversion].
Length = 195
Score = 24.7 bits (54), Expect = 7.0
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 8 EHWNALLLNLRELSDWVFRKD 28
H+N ++ +DW +KD
Sbjct: 142 THFNGQSVDGDNDADWAVKKD 162
>gnl|CDD|236404 PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase;
Validated.
Length = 1165
Score = 24.4 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 6/24 (25%)
Query: 52 RAFRRQL------EDKRAIIENSI 69
RAF L E+KR IIE +
Sbjct: 333 RAFAEGLDEILVVEEKRQIIEYQL 356
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.379
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,415,290
Number of extensions: 364808
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 20
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)