RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11245
(87 letters)
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 33.4 bits (76), Expect = 0.004
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
RLE + E+ + N+ E W+ K ++ G + +Q H AF
Sbjct: 100 QRLEESLEYQQ-FVANVEEEEAWINEKMTLVAS-EDYGDTLAAIQGLLKKHEAFETDFTV 157
Query: 61 KRAIIENSILSGRQYLNE 78
+ + + +G + +
Sbjct: 158 HKDRVNDVCANGEDLIKK 175
Score = 26.4 bits (58), Expect = 0.99
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 17 LRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL 76
+ + W+ K +S G D+ +Q H+ +L I++ + +G++
Sbjct: 9 MDDEESWIKEKKLLVSS-EDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLS 67
Query: 77 NE 78
++
Sbjct: 68 DD 69
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 31.8 bits (72), Expect = 0.015
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
RLE + E+ + N+ E W+ K ++ G + +Q H AF
Sbjct: 209 QRLEESLEYQQ-FVANVEEEEAWINEKMTLVAS-EDYGDTLAAIQGLLKKHEAFETDFTV 266
Query: 61 KRAIIENSILSGRQYLNE 78
+ + + +G + +
Sbjct: 267 HKDRVNDVCANGEDLIKK 284
Score = 26.0 bits (57), Expect = 1.6
Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
+++ W+ +A L+ G D+ + H+ + +++
Sbjct: 11 GIKDFDFWLSEVEALLAS-EDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSL 69
Query: 76 LNE 78
+
Sbjct: 70 MTS 72
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 30.7 bits (69), Expect = 0.037
Identities = 10/78 (12%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
RL + + +R+L W+ ++ D++ ++ ++H+ + +++
Sbjct: 213 VRLVDTGDKF-RFFSMVRDLMLWMEDVIRQIEA-QEKPRDVSSVELLMNNHQGIKAEIDA 270
Query: 61 KRAIIENSILSGRQYLNE 78
+ I G+ L
Sbjct: 271 RNDSFTTCIELGKSLLAR 288
Score = 28.4 bits (63), Expect = 0.23
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIE 66
+ +E+ + K +L +G D N ++ + H F ++ +
Sbjct: 121 DAKEIFGRIQDKHKKLPE--ELGRDQNTVETLQRMHTTFEHDIQALGTQVR 169
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 29.9 bits (67), Expect = 0.059
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
+L + ++ + W+ K +S G D+ +Q H+ +L
Sbjct: 103 AKLNESHRLHQ-FFRDMDDEESWIKEKKLLVSSE-DYGRDLTGVQNLRKKHKRLEAELAA 160
Query: 61 KRAIIENSILSGRQYLNE 78
I+ + +G++ ++
Sbjct: 161 HEPAIQGVLDTGKKLSDD 178
Score = 25.3 bits (55), Expect = 2.7
Identities = 6/63 (9%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
+++ W+ +A L+ G D+ + H+ + +++
Sbjct: 11 GIKDFDFWLSEVEALLAS-EDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSL 69
Query: 76 LNE 78
+
Sbjct: 70 MTS 72
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.17
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 16/80 (20%)
Query: 13 LLLNLRELSDWVFRK----DAELSRLGPIGGDINVLQKQE----DDHRAFRRQLEDKRAI 64
+ L+ R ++ +K + G I + L+ + D+ + R +
Sbjct: 496 VFLDFR----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA---- 547
Query: 65 IENSILSGRQYLNEASLTDL 84
I + + + L + TDL
Sbjct: 548 ILDFLPKIEENLICSKYTDL 567
Score = 25.6 bits (55), Expect = 2.5
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 1 NRLESNSEHWNA------LLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDD 50
++ +S WNA L L+ ++ D + RL + ++ L K E++
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL--VNAILDFLPKIEEN 558
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 28.4 bits (63), Expect = 0.24
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
+LE +S H + +L W+ + D +Q + H++ +++
Sbjct: 50 QKLE-DSYHLQVFKRDADDLGKWI--MEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQT 106
Query: 61 KRAIIENSILSGRQYLNE 78
K ++ + +
Sbjct: 107 KSRLMSELEKTREERFTM 124
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 28.0 bits (62), Expect = 0.34
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 5 SNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAI 64
S+ E ++ L L++L WV + G D+ ++ Q HR + +E+ RA
Sbjct: 2 SHMELEDSTLRYLQDLLAWVEENQHRVDG-AEWGVDLPSVEAQLGSHRGLHQSIEEFRAK 60
Query: 65 IENSILSGRQYLNEAS 80
IE + Q
Sbjct: 61 IERARSDEGQLSPATR 76
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 28.0 bits (62), Expect = 0.35
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
+ R+L W+ +S + D+ + + H+ R +++ + + G+Q
Sbjct: 21 DFRDLMSWINGIRGLVSS-DELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQL 79
Query: 76 LNE 78
L
Sbjct: 80 LAH 82
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 27.7 bits (61), Expect = 0.37
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 2 RLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDK 61
+L + S + E+ + K EL +G D + + H AF R+L
Sbjct: 102 QLLAASYDLHRYFYTGAEILGLIDEKHRELPE--DVGLDASTAESFHRVHTAFERELHLL 159
Query: 62 RAIIE 66
++
Sbjct: 160 GVQVQ 164
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 27.5 bits (61), Expect = 0.39
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 1 NRLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLED 60
+LE + + EL W+ ++ D LQ + H+AF +++
Sbjct: 40 QKLEDSYRFQF-FQRDAEELEKWI--QEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQA 96
Query: 61 KRAIIENSILSGRQYLNE 78
I +G ++E
Sbjct: 97 NSGAIVKLDETGNLMISE 114
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 27.6 bits (61), Expect = 0.40
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 2 RLESNSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDK 61
L+ N + +++L +WV +L R G D+ ++ ++H+ R +E+
Sbjct: 14 LLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDR-TEWGSDLPSVESHLENHKNVHRAIEEF 72
Query: 62 RAIIENSILSGRQYLNEAS 80
+ ++ + +S Q
Sbjct: 73 ESSLKEAKISEIQMTAPLK 91
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 27.2 bits (60), Expect = 0.69
Identities = 5/71 (7%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
+L + W+ ++ + ++ H + +++ + + SG +
Sbjct: 8 DLDDFQAWLSITQKAVASEDM-PESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKV 66
Query: 76 LNEASLTDLTD 86
+ + +
Sbjct: 67 IQGQTDPEYLL 77
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 26.9 bits (59), Expect = 0.78
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 6 NSEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAII 65
S + E+ + K EL +G D + + H AF R + +
Sbjct: 215 ASYDLHRYFYTGAEILGLIDEKHRELPE--DVGLDASTAESFHRVHTAFERDVHLLGVQV 272
Query: 66 EN 67
+
Sbjct: 273 QQ 274
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat,
helical linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 26.0 bits (57), Expect = 1.5
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
R+L W+ ++ D++ ++ H+ ++E + + G
Sbjct: 12 MARDLLSWMESIIRQIET-QERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESL 70
Query: 76 LNE 78
L
Sbjct: 71 LQR 73
Score = 24.1 bits (52), Expect = 6.5
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 7 SEHWNALLLNLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIE 66
+ W+ ++ L+ G G ++ ++K H AF +
Sbjct: 109 LLEVCQFSRDASVAEAWLIAQEPYLAS-GDFGHTVDSVEKLIKRHEAFEKSTASWAERFA 167
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 25.0 bits (54), Expect = 3.3
Identities = 8/63 (12%), Positives = 18/63 (28%)
Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
W + K+ L + + ++ H AF L + +E ++
Sbjct: 22 KASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQEL 81
Query: 76 LNE 78
Sbjct: 82 NEL 84
>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo
sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*
Length = 244
Score = 24.2 bits (53), Expect = 7.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 34 LGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQYL--NEASLTDL 84
LGP+ G +K E + A + L+ +E+ L R +L + +L DL
Sbjct: 119 LGPLIGVQVPEEKVERNRTAMDQALQ----WLEDKFLGDRPFLAGQQVTLADL 167
>3uf6_A LMO1369 protein; structural genomics, the center for structural
genomics of I diseases, csgid, unknown function,
transferase; HET: COD; 1.80A {Listeria monocytogenes}
PDB: 3tng_A* 3u9e_A*
Length = 291
Score = 23.7 bits (52), Expect = 9.3
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 58 LEDKRAIIENSILSGRQ 74
++K AI EN++ Q
Sbjct: 145 TKEKIAITENALAVAHQ 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.379
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,278,423
Number of extensions: 63984
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 34
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)