RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11245
         (87 letters)



>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 124

 Score = 28.0 bits (62), Expect = 0.085
 Identities = 8/63 (12%), Positives = 18/63 (28%)

Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
                 W + K+  L +       +  ++     H AF   L   +  +E      ++ 
Sbjct: 22 KASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQEL 81

Query: 76 LNE 78
             
Sbjct: 82 NEL 84


>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken
          (Gallus gallus) [TaxId: 9031]}
          Length = 110

 Score = 25.0 bits (54), Expect = 1.1
 Identities = 6/62 (9%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
           +++   W+   +A L+     G D+  +      H+     +      +++        
Sbjct: 10 GIKDFDFWLSEVEALLAS-EDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSL 68

Query: 76 LN 77
          + 
Sbjct: 69 MT 70


>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
          gallus) [TaxId: 9031]}
          Length = 104

 Score = 24.2 bits (52), Expect = 1.8
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
          N+ E   W+  K   ++     G  +  +Q     H AF       +  + +   +G   
Sbjct: 5  NVEEEEAWINEKMTLVAS-EDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDL 63

Query: 76 LNE 78
          + +
Sbjct: 64 IKK 66


>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
          7242]}
          Length = 107

 Score = 23.0 bits (49), Expect = 4.6
 Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 1/63 (1%)

Query: 16 NLRELSDWVFRKDAELSRLGPIGGDINVLQKQEDDHRAFRRQLEDKRAIIENSILSGRQY 75
          +      W+  ++A L+           ++     H  F + +      I        Q 
Sbjct: 11 DCELAESWMSAREAFLNA-DDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQL 69

Query: 76 LNE 78
          + +
Sbjct: 70 IAQ 72


>d1uoka1 b.71.1.1 (A:480-558) Oligo-1,6-glucosidase {Bacillus
          cereus [TaxId: 1396]}
          Length = 79

 Score = 22.1 bits (47), Expect = 8.8
 Identities = 3/27 (11%), Positives = 12/27 (44%)

Query: 39 GDINVLQKQEDDHRAFRRQLEDKRAII 65
          G  +++ +      A+ R    ++ ++
Sbjct: 1  GSYDLILENNPSIFAYVRTYGVEKLLV 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 304,931
Number of extensions: 11147
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 9
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)