BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11246
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B OS=Drosophila melanogaster GN=Dys PE=1 SV=3
Length = 1669
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 55/59 (93%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
KDLQ+EIE+H+ VY L+ +G++LLGSLTSQ+DAVMLQRRLDEMNQRW++LK++S+AIR
Sbjct: 685 KDLQSEIETHRVVYDRLDGTGRKLLGSLTSQEDAVMLQRRLDEMNQRWNNLKSKSIAIR 743
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1
SV=3
Length = 3598
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 55/59 (93%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
KDLQ+EIE+H+ VY L+ +G++LLGSLTSQ+DAVMLQRRLDEMNQRW++LK++S+AIR
Sbjct: 2513 KDLQSEIETHRVVYDRLDGTGRKLLGSLTSQEDAVMLQRRLDEMNQRWNNLKSKSIAIR 2571
>sp|Q0KI50|DMDD_DROME Dystrophin, isoform D OS=Drosophila melanogaster GN=Dys PE=1 SV=1
Length = 1854
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 55/59 (93%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
+DLQ+EIE+H+ VY L+ +G++LLGSLTSQ+DAVMLQRRLDEMNQRW++LK++S+AIR
Sbjct: 870 QDLQSEIETHRVVYDRLDGTGRKLLGSLTSQEDAVMLQRRLDEMNQRWNNLKSKSIAIR 928
>sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1
Length = 3674
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 45/59 (76%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
+DLQ EIE+H D+Y +L+ +G+++L SL DDA++LQRRLD MN +W L+ +SL IR
Sbjct: 2728 QDLQGEIEAHTDIYHNLDENGQKILRSLEGSDDAILLQRRLDNMNFKWSELRKKSLNIR 2786
>sp|P11533|DMD_CHICK Dystrophin OS=Gallus gallus GN=DMD PE=2 SV=1
Length = 3660
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 46/59 (77%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
+DLQAEI++H D++ +L+ +G+++L SL +DAV+LQRRLD MN RW L+ +SL IR
Sbjct: 2736 QDLQAEIDAHTDIFHNLDENGQKILRSLEGSEDAVLLQRRLDNMNFRWSELRKKSLNIR 2794
>sp|O97592|DMD_CANFA Dystrophin OS=Canis familiaris GN=DMD PE=2 SV=1
Length = 3680
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
+DLQ EIE+H D+Y +L+ +G+++L SL DDA +LQRRLD MN +W L+ +SL IR
Sbjct: 2734 QDLQGEIEAHTDIYHNLDENGQKVLRSLEGSDDAALLQRRLDNMNFKWSELRKKSLNIR 2792
>sp|P11532|DMD_HUMAN Dystrophin OS=Homo sapiens GN=DMD PE=1 SV=3
Length = 3685
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
+DLQ EIE+H DVY +L+ + +++L SL DDAV+LQRRLD MN +W L+ +SL IR
Sbjct: 2739 QDLQGEIEAHTDVYHNLDENSQKILRSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIR 2797
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHL 54
K+LQ I + V +LN +G+ ++ +S+ DA +LQ +L +N RW +
Sbjct: 2146 KELQDGIGQRQTVVRTLNATGEEIIQQ-SSKTDASILQEKLGSLNLRWQEV 2195
>sp|P11531|DMD_MOUSE Dystrophin OS=Mus musculus GN=Dmd PE=1 SV=3
Length = 3678
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
+DLQ EIE+H D+Y +L+ +G+++L SL D+A +LQRRLD MN +W L+ +SL IR
Sbjct: 2732 QDLQGEIETHTDIYHNLDENGQKILRSLEGSDEAPLLQRRLDNMNFKWSELQKKSLNIR 2790
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWH----HLKNRSL 59
K+LQ I + V +LN +G+ ++ +S+ D +LQ +L ++ RWH L R
Sbjct: 2148 KELQDGIGQRQAVVRTLNATGEEIIQQ-SSKTDVNILQEKLGSLSLRWHDICKELAERRK 2206
Query: 60 AIRMQSLIFYSLSVTLQPGIQY--PIDTLAFTTLSD 93
I Q + L + + D +A T L D
Sbjct: 2207 RIEEQKNVLSEFQRDLNEFVLWLEEADNIAITPLGD 2242
>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2
Length = 3433
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 47/59 (79%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
+D+QAEI++H D++ S++ + ++++ +L + ++A MLQ RLD+MNQRW+ LK +S +IR
Sbjct: 2493 QDIQAEIDAHNDIFKSIDGNRQKMVKALGNSEEATMLQHRLDDMNQRWNDLKAKSASIR 2551
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRW 51
+++L+ I SH+ +++LN +G ++ L SQ D L+ +L +NQRW
Sbjct: 2018 QQELEVGISSHQPSFAALNRTGDGIVQKL-SQADGSFLKEKLAGLNQRW 2065
>sp|Q9TW65|DMD_CAEEL Dystrophin-1 OS=Caenorhabditis elegans GN=dys-1 PE=1 SV=2
Length = 3674
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLK 55
K L AE+ +H+DV S+ GK L SL S ++ V L +R+ E +RW L+
Sbjct: 2726 KTLNAELNAHEDVMKSVEKMGKMLAESLESGNEKVELLKRVGETTRRWTALR 2777
>sp|Q9QXZ0|MACF1_MOUSE Microtubule-actin cross-linking factor 1 OS=Mus musculus GN=Macf1
PE=1 SV=2
Length = 7354
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 6 LQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWH 52
L+ ++ +H+ +++N +G LL S ++ DDA L+ RL+ MNQ W
Sbjct: 6225 LKNDVLAHQATVATVNKAGSELLES-SAGDDASSLRSRLETMNQCWE 6270
>sp|Q9UPN3|MACF1_HUMAN Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo
sapiens GN=MACF1 PE=1 SV=4
Length = 7388
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 6 LQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWH 52
L+ ++ +H+ ++N +G LL S ++ DDA L+ RL+ MNQ W
Sbjct: 6269 LKNDVLAHQATVETVNKAGNELLES-SAGDDASSLRSRLEAMNQCWE 6314
>sp|Q03001|DYST_HUMAN Dystonin OS=Homo sapiens GN=DST PE=1 SV=4
Length = 7570
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 6 LQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHL 54
LQ ++ +H+ ++N +G L+ S ++ ++A LQ +L+ +NQRW ++
Sbjct: 6423 LQNDVLAHQSTVEAVNKAGNDLIES-SAGEEASNLQNKLEVLNQRWQNV 6470
>sp|D3ZHV2|MACF1_RAT Microtubule-actin cross-linking factor 1 OS=Rattus norvegicus
GN=Macf1 PE=1 SV=1
Length = 5430
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 6 LQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWH 52
L+ ++ +H+ ++N +G LL S ++ DDA L+ RL+ MNQ W
Sbjct: 4311 LKNDVLAHQATVETVNKAGNELLES-SAGDDASSLRSRLETMNQCWE 4356
>sp|Q9NRC6|SPTN5_HUMAN Spectrin beta chain, non-erythrocytic 5 OS=Homo sapiens GN=SPTBN5
PE=1 SV=1
Length = 3674
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 1 MEKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLA 60
++ + +AE+++H++V +S+ G+ LL S A + +RL + + W L+ +++A
Sbjct: 2189 LKHQAFEAEVQAHEEVMTSVAKKGEALLAQ--SHPRAGEVSQRLQGLRKHWEDLR-QAMA 2245
Query: 61 IRMQSL 66
+R Q L
Sbjct: 2246 LRGQEL 2251
>sp|P13395|SPTCA_DROME Spectrin alpha chain OS=Drosophila melanogaster GN=alpha-Spec PE=1
SV=2
Length = 2415
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
K L+AE+ SH+ ++ +G++L+ S +++RL +NQ W LKN + A R
Sbjct: 1755 KRLEAELGSHEPAIQAVQEAGEKLMD--VSNLGVPEIEQRLKALNQAWAELKNLA-ATRG 1811
Query: 64 QSL 66
Q L
Sbjct: 1812 QKL 1814
>sp|Q8NF91|SYNE1_HUMAN Nesprin-1 OS=Homo sapiens GN=SYNE1 PE=1 SV=4
Length = 8797
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 6 LQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHL 54
LQ E+ S YS L K L S+ S+DD M++ L+++++RW L
Sbjct: 1702 LQNEVVSQASFYSKL-LQLKESLFSVASKDDVKMMKLHLEQLDERWRDL 1749
>sp|P16546|SPTN1_MOUSE Spectrin alpha chain, non-erythrocytic 1 OS=Mus musculus GN=Sptan1
PE=1 SV=4
Length = 2472
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 6 LQAEIESHKDVYSSLNTSGKRLL--GSLTSQDDAVMLQRRLDEMNQRWHHLKNRS 58
LQAEI H+ ++ G ++ G ++D ++ +L E+NQ+W LK ++
Sbjct: 829 LQAEIAGHEPRIKAVTQKGNAMVEEGHFAAED----VKAKLSELNQKWEALKAKA 879
>sp|P16086|SPTN1_RAT Spectrin alpha chain, non-erythrocytic 1 OS=Rattus norvegicus
GN=Sptan1 PE=1 SV=2
Length = 2472
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 6 LQAEIESHKDVYSSLNTSGKRLL--GSLTSQDDAVMLQRRLDEMNQRWHHLKNRS 58
LQAEI H+ ++ G ++ G ++D ++ +L E+NQ+W LK ++
Sbjct: 829 LQAEIAGHEPRIKAVTQKGNAMVEEGHFAAED----VKAKLSELNQKWEALKAKA 879
>sp|Q13813|SPTN1_HUMAN Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTAN1
PE=1 SV=3
Length = 2472
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 6 LQAEIESHKDVYSSLNTSGKRLL--GSLTSQDDAVMLQRRLDEMNQRWHHLKNRS 58
LQAEI H+ ++ G ++ G ++D ++ +L E+NQ+W LK ++
Sbjct: 829 LQAEIAGHEPRIKAVTQKGNAMVEEGHFAAED----VKAKLHELNQKWEALKAKA 879
>sp|Q91ZU6|DYST_MOUSE Dystonin OS=Mus musculus GN=Dst PE=1 SV=1
Length = 7389
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 6 LQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHL 54
LQ ++ +H+ ++N +G L+ S + ++A LQ +L +NQRW +
Sbjct: 6241 LQNDVLAHQSTVEAVNKAGNDLIES-SEGEEASNLQYKLRILNQRWQDI 6288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,349,562
Number of Sequences: 539616
Number of extensions: 950550
Number of successful extensions: 3291
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3204
Number of HSP's gapped (non-prelim): 118
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)