Query psy11246
Match_columns 101
No_of_seqs 63 out of 65
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 21:50:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4286|consensus 99.7 1.4E-17 3E-22 146.7 4.2 79 2-89 40-118 (966)
2 cd00176 SPEC Spectrin repeats, 98.9 6.5E-09 1.4E-13 72.5 7.3 87 2-91 41-127 (213)
3 smart00150 SPEC Spectrin repea 98.8 1.6E-08 3.5E-13 63.8 5.7 62 3-66 40-101 (101)
4 PF00435 Spectrin: Spectrin re 98.7 9E-08 1.9E-12 60.4 6.4 64 2-67 42-105 (105)
5 cd00176 SPEC Spectrin repeats, 98.0 2.8E-05 6.1E-10 54.1 6.2 65 3-68 148-212 (213)
6 KOG0517|consensus 96.6 0.0043 9.2E-08 60.6 6.3 84 4-90 673-756 (2473)
7 KOG0517|consensus 95.6 0.041 8.8E-07 54.2 7.1 86 3-91 1522-1607(2473)
8 KOG0040|consensus 83.9 1.8 3.9E-05 42.9 4.8 83 3-88 826-908 (2399)
9 KOG0040|consensus 81.2 6.8 0.00015 39.2 7.5 85 4-91 1633-1717(2399)
10 PRK14156 heat shock protein Gr 71.2 25 0.00055 26.6 7.0 62 5-71 9-70 (177)
11 TIGR02231 conserved hypothetic 71.2 15 0.00034 30.9 6.4 50 34-83 123-172 (525)
12 cd00632 Prefoldin_beta Prefold 70.3 30 0.00064 23.2 6.9 72 4-76 23-104 (105)
13 PF12325 TMF_TATA_bd: TATA ele 67.5 16 0.00034 26.0 4.9 72 3-81 25-107 (120)
14 PRK14142 heat shock protein Gr 67.1 16 0.00034 28.9 5.2 41 33-73 38-78 (223)
15 PF08826 DMPK_coil: DMPK coile 64.1 35 0.00076 21.8 6.4 56 3-68 3-58 (61)
16 TIGR02338 gimC_beta prefoldin, 63.9 43 0.00093 22.7 6.4 70 3-73 26-105 (110)
17 PF10805 DUF2730: Protein of u 63.8 38 0.00082 23.2 6.1 53 5-61 39-91 (106)
18 PRK14164 heat shock protein Gr 63.1 25 0.00053 27.6 5.6 43 32-74 74-116 (218)
19 COG3418 Flagellar biosynthesis 60.8 11 0.00025 28.1 3.2 57 5-63 39-96 (146)
20 PRK14161 heat shock protein Gr 58.8 37 0.0008 25.6 5.8 47 25-73 18-64 (178)
21 PF09602 PhaP_Bmeg: Polyhydrox 55.1 44 0.00096 25.4 5.6 65 18-83 62-127 (165)
22 PRK10884 SH3 domain-containing 47.7 78 0.0017 24.3 6.0 11 4-14 96-106 (206)
23 PF01920 Prefoldin_2: Prefoldi 47.2 75 0.0016 20.4 5.6 51 24-75 52-102 (106)
24 PRK14151 heat shock protein Gr 46.6 70 0.0015 24.0 5.5 36 38-73 30-65 (176)
25 PF10241 KxDL: Uncharacterized 45.3 89 0.0019 20.7 5.8 66 5-76 12-77 (88)
26 COG0576 GrpE Molecular chapero 44.5 67 0.0015 24.3 5.2 39 36-74 44-82 (193)
27 PRK14155 heat shock protein Gr 43.5 79 0.0017 24.5 5.5 38 36-73 21-58 (208)
28 PF08657 DASH_Spc34: DASH comp 43.5 61 0.0013 25.8 5.0 53 25-81 167-219 (259)
29 PRK14147 heat shock protein Gr 43.4 85 0.0018 23.5 5.5 37 36-72 26-62 (172)
30 PRK14163 heat shock protein Gr 42.9 62 0.0013 25.3 4.9 37 37-73 49-85 (214)
31 PRK09039 hypothetical protein; 42.8 78 0.0017 25.9 5.7 45 37-81 118-162 (343)
32 PRK14159 heat shock protein Gr 41.1 96 0.0021 23.4 5.5 39 35-73 30-68 (176)
33 PRK14162 heat shock protein Gr 40.5 73 0.0016 24.4 4.9 38 37-74 48-85 (194)
34 PRK14158 heat shock protein Gr 40.2 97 0.0021 23.8 5.5 38 37-74 49-86 (194)
35 PRK10884 SH3 domain-containing 40.2 88 0.0019 24.0 5.3 20 36-55 101-120 (206)
36 PF14523 Syntaxin_2: Syntaxin- 40.1 81 0.0017 20.3 4.5 37 25-61 16-52 (102)
37 PRK14157 heat shock protein Gr 40.1 94 0.002 24.6 5.5 39 36-74 85-123 (227)
38 PRK14154 heat shock protein Gr 38.9 1E+02 0.0022 24.0 5.5 37 36-72 60-96 (208)
39 PRK14141 heat shock protein Gr 38.5 1E+02 0.0022 23.9 5.5 38 36-73 39-76 (209)
40 PRK14143 heat shock protein Gr 38.1 80 0.0017 24.9 4.9 36 37-72 76-111 (238)
41 PRK14145 heat shock protein Gr 37.7 1.1E+02 0.0024 23.5 5.5 37 37-73 54-90 (196)
42 PRK14144 heat shock protein Gr 37.1 1.2E+02 0.0025 23.5 5.5 38 36-73 53-90 (199)
43 PRK14148 heat shock protein Gr 37.0 1.2E+02 0.0025 23.3 5.5 38 36-73 48-85 (195)
44 PF05700 BCAS2: Breast carcino 36.0 1.4E+02 0.0029 22.8 5.8 68 5-81 147-214 (221)
45 PRK14139 heat shock protein Gr 35.3 1E+02 0.0022 23.5 4.9 39 36-74 40-78 (185)
46 PRK14149 heat shock protein Gr 35.2 1.3E+02 0.0028 23.1 5.5 40 34-73 42-81 (191)
47 PF09304 Cortex-I_coil: Cortex 35.1 91 0.002 22.2 4.3 42 38-79 47-88 (107)
48 PRK14153 heat shock protein Gr 34.9 1.3E+02 0.0029 23.1 5.5 37 36-72 41-77 (194)
49 PRK14146 heat shock protein Gr 34.4 1.3E+02 0.0029 23.3 5.5 37 37-73 63-99 (215)
50 PRK14140 heat shock protein Gr 34.2 1.4E+02 0.003 22.9 5.5 38 36-73 45-82 (191)
51 PRK11637 AmiB activator; Provi 33.1 1.9E+02 0.0042 23.8 6.6 12 3-14 49-60 (428)
52 PF07889 DUF1664: Protein of u 33.1 1.1E+02 0.0024 22.0 4.6 58 15-78 54-111 (126)
53 PRK03947 prefoldin subunit alp 32.9 1.6E+02 0.0034 20.4 5.3 45 34-78 93-137 (140)
54 PF11624 M157: MHC class I-lik 31.9 60 0.0013 25.8 3.3 33 29-61 113-145 (256)
55 PF10779 XhlA: Haemolysin XhlA 31.5 1.4E+02 0.003 18.8 5.4 57 40-96 4-63 (71)
56 PF00261 Tropomyosin: Tropomyo 30.2 1.9E+02 0.0041 22.1 5.7 82 3-84 143-225 (237)
57 PF11616 EZH2_WD-Binding: WD r 30.2 83 0.0018 17.8 2.8 24 35-58 6-29 (30)
58 PF10186 Atg14: UV radiation r 30.0 1.9E+02 0.0042 21.6 5.7 27 41-67 69-95 (302)
59 COG4942 Membrane-bound metallo 29.9 2.7E+02 0.006 24.0 7.1 61 3-69 61-121 (420)
60 PF03114 BAR: BAR domain; Int 29.7 1.9E+02 0.0042 20.1 5.4 69 19-88 4-79 (229)
61 PF01814 Hemerythrin: Hemeryth 28.9 1.5E+02 0.0033 18.6 4.4 45 45-89 74-121 (133)
62 COG1579 Zn-ribbon protein, pos 28.4 2.6E+02 0.0056 22.3 6.3 78 4-81 55-135 (239)
63 PRK14160 heat shock protein Gr 28.4 1.9E+02 0.0042 22.5 5.5 36 37-72 70-105 (211)
64 PHA03247 large tegument protei 26.9 2.4E+02 0.0052 30.4 7.0 70 14-84 960-1030(3151)
65 TIGR00414 serS seryl-tRNA synt 26.9 1.1E+02 0.0023 25.6 4.2 41 53-93 73-113 (418)
66 PF01025 GrpE: GrpE; InterPro 26.0 2.2E+02 0.0048 20.0 5.1 38 35-72 18-55 (165)
67 PF04156 IncA: IncA protein; 25.8 2.5E+02 0.0055 20.1 7.0 27 36-62 124-150 (191)
68 smart00542 FYRC "FY-rich" doma 25.8 81 0.0018 20.7 2.7 18 47-64 19-36 (86)
69 PF02996 Prefoldin: Prefoldin 25.6 1.3E+02 0.0028 19.9 3.7 42 34-75 76-117 (120)
70 PF02403 Seryl_tRNA_N: Seryl-t 25.4 2E+02 0.0044 18.9 5.2 37 4-43 39-75 (108)
71 PF05965 FYRC: F/Y rich C-term 25.0 78 0.0017 20.3 2.4 20 47-66 23-42 (86)
72 PF07034 ORC3_N: Origin recogn 24.5 58 0.0013 26.1 2.1 48 37-93 25-72 (330)
73 PF13747 DUF4164: Domain of un 24.2 2.3E+02 0.0049 18.9 6.8 64 5-71 19-82 (89)
74 PRK02224 chromosome segregatio 24.2 2.1E+02 0.0045 25.5 5.6 72 4-75 324-396 (880)
75 PF15011 CK2S: Casein Kinase 2 23.8 1.6E+02 0.0036 21.7 4.3 51 39-89 75-135 (168)
76 PF06216 RTBV_P46: Rice tungro 22.8 1.2E+02 0.0027 25.3 3.7 39 45-83 81-119 (389)
77 PF14966 DNA_repr_REX1B: DNA r 22.8 1.6E+02 0.0034 20.0 3.7 44 38-81 36-81 (97)
78 PF07106 TBPIP: Tat binding pr 21.3 2.8E+02 0.006 19.9 4.9 55 4-62 82-136 (169)
79 PF00846 Hanta_nucleocap: Hant 21.2 2.3E+02 0.005 24.6 5.1 23 2-27 3-25 (428)
80 PF14643 DUF4455: Domain of un 21.2 4.4E+02 0.0095 22.3 6.8 54 21-76 46-99 (473)
81 PF11593 Med3: Mediator comple 21.2 1.3E+02 0.0027 25.8 3.5 79 3-89 10-105 (379)
82 PF11621 Sbi-IV: C3 binding do 21.1 1.9E+02 0.0042 18.9 3.7 24 25-49 37-60 (69)
83 PF08537 NBP1: Fungal Nap bind 20.9 2.5E+02 0.0053 23.6 5.1 49 27-76 168-216 (323)
84 PHA03246 large tegument protei 20.8 3.6E+02 0.0078 29.0 6.9 59 25-84 1044-1102(3095)
85 PF03962 Mnd1: Mnd1 family; I 20.7 36 0.00078 25.6 0.2 63 2-68 13-95 (188)
86 PF12644 DUF3782: Protein of u 20.6 2.1E+02 0.0045 17.2 5.0 24 33-56 25-48 (64)
No 1
>KOG4286|consensus
Probab=99.69 E-value=1.4e-17 Score=146.65 Aligned_cols=79 Identities=35% Similarity=0.482 Sum_probs=75.0
Q ss_pred chHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCch
Q psy11246 2 EKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQY 81 (101)
Q Consensus 2 ~~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~E 81 (101)
++++++++|++ ++++.+|++|+.+|++++++++|+ + ||+||++||+|+++||+|||+++++|++|+.+|+|
T Consensus 40 ~~~~~~~e~~a-----~~v~~~~~kl~~~l~~~~~~~~l~--~--mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~e 110 (966)
T KOG4286|consen 40 QWQDLQGEIEA-----HNLDENSQKILRSLEGSDDAVLLQ--L--MNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQE 110 (966)
T ss_pred HHhcccccccc-----ccCchHHHHHHHHhcCCccchHHH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 57899999999 689999999999999999999999 3 99999999999999999999999999999999999
Q ss_pred hhhhhhhh
Q psy11246 82 PIDTLAFT 89 (101)
Q Consensus 82 li~WL~~~ 89 (101)
|+.||+..
T Consensus 111 l~~wl~~k 118 (966)
T KOG4286|consen 111 LLVWLQLK 118 (966)
T ss_pred HHHHHHhh
Confidence 99999865
No 2
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=98.90 E-value=6.5e-09 Score=72.47 Aligned_cols=87 Identities=25% Similarity=0.331 Sum_probs=78.9
Q ss_pred chHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCch
Q psy11246 2 EKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQY 81 (101)
Q Consensus 2 ~~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~E 81 (101)
+.+.++.+|..|.+.+..++..|+.|+... ++++..+..+++.||.||+.|++.+.+++.+|+...+.+..++..+.
T Consensus 41 ~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~--~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~- 117 (213)
T cd00176 41 KHEALEAELAAHEERVEALNELGEQLIEEG--HPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD- 117 (213)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 356889999999999999999999999987 38999999999999999999999999999999999999999987665
Q ss_pred hhhhhhhhhh
Q psy11246 82 PIDTLAFTTL 91 (101)
Q Consensus 82 li~WL~~~~~ 91 (101)
+..|+..+..
T Consensus 118 l~~wl~~~e~ 127 (213)
T cd00176 118 LEQWLEEKEA 127 (213)
T ss_pred HHHHHHHHHH
Confidence 9999987753
No 3
>smart00150 SPEC Spectrin repeats.
Probab=98.79 E-value=1.6e-08 Score=63.82 Aligned_cols=62 Identities=32% Similarity=0.560 Sum_probs=57.9
Q ss_pred hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Q psy11246 3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSL 66 (101)
Q Consensus 3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe 66 (101)
.+.++.+|..|++.+..++..|..|+.. +++++..++.+++.||.||..|+..+.+++.+|+
T Consensus 40 ~~~~~~e~~~~~~~v~~~~~~~~~L~~~--~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 40 HEALEAELEAHEERVEALNELGEQLIEE--GHPDAEEIEERLEELNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999987 6788999999999999999999999999999884
No 4
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=98.67 E-value=9e-08 Score=60.40 Aligned_cols=64 Identities=33% Similarity=0.439 Sum_probs=58.7
Q ss_pred chHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHh
Q psy11246 2 EKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLI 67 (101)
Q Consensus 2 ~~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~ 67 (101)
+.+.++++|..|++-+..++..|..| ... +++++..++.+++.||.||..|+..+.+++.+|+.
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L-~~~-~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQL-IDS-GPEDSDEIQEKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHT-THTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHH-HHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35689999999999999999999999 454 69999999999999999999999999999999974
No 5
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=97.96 E-value=2.8e-05 Score=54.12 Aligned_cols=65 Identities=26% Similarity=0.384 Sum_probs=59.5
Q ss_pred hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy11246 3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIF 68 (101)
Q Consensus 3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~ 68 (101)
.+.++.+|..|++.+..++..|..++... .++++..++.+++.++.+|..|+..+.+++.+|+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 148 HKELEEELEAHEPRLKSLNELAEELLEEG-HPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999888 666669999999999999999999999999999764
No 6
>KOG0517|consensus
Probab=96.65 E-value=0.0043 Score=60.57 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=74.2
Q ss_pred HHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhh
Q psy11246 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPI 83 (101)
Q Consensus 4 ~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli 83 (101)
+.|+.||.+|.+.+..+...|+.+|..- ++.++-++.|++.|+.+|..+..-+..+++||+.+. ..-.|..+.+++-
T Consensus 673 KalE~E~~~~~a~~~~~~~~G~~Lvae~--~pg~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~-~~~QffaDAdd~~ 749 (2473)
T KOG0517|consen 673 KALEDEMRGRDAHLKQMIREGEELVAEG--HPGSDQIQERAAEIREQWQRLEALVAGRGRRLQEAR-ELYQFFADADDAE 749 (2473)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHhcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHH
Confidence 5799999999999999999999999875 444557899999999999999999999999998765 4678999999999
Q ss_pred hhhhhhh
Q psy11246 84 DTLAFTT 90 (101)
Q Consensus 84 ~WL~~~~ 90 (101)
.||-++-
T Consensus 750 sWl~d~~ 756 (2473)
T KOG0517|consen 750 SWLRDAL 756 (2473)
T ss_pred HHHHHHH
Confidence 9997653
No 7
>KOG0517|consensus
Probab=95.57 E-value=0.041 Score=54.16 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=74.7
Q ss_pred hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246 3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP 82 (101)
Q Consensus 3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El 82 (101)
.+.|++||..|+|-+..+=.+|+.++.+ +.++|..+..++..+-+-|.+++.....++.+|..+- ..-.|--+-.|+
T Consensus 1522 ~q~Lq~EI~~H~prI~~vl~~gq~Li~~--~h~~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~-kaQQY~fDaaE~ 1598 (2473)
T KOG0517|consen 1522 NQTLQAEIKGHQPRINDVLERGQSLIDS--GHPEAEAIEEKLQELESAWQELKEACELRRQRLDEAV-KAQQYYFDAAEA 1598 (2473)
T ss_pred hHHHHHHHHhcchHHHHHHHHhHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHH
Confidence 4689999999999999998999887766 5779999999999999999999999999999997654 456777889999
Q ss_pred hhhhhhhhh
Q psy11246 83 IDTLAFTTL 91 (101)
Q Consensus 83 i~WL~~~~~ 91 (101)
=.|+.+..+
T Consensus 1599 EaWm~Eqel 1607 (2473)
T KOG0517|consen 1599 EAWMGEQEL 1607 (2473)
T ss_pred HHHHhhhHH
Confidence 999987644
No 8
>KOG0040|consensus
Probab=83.90 E-value=1.8 Score=42.91 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=67.6
Q ss_pred hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchh
Q psy11246 3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYP 82 (101)
Q Consensus 3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~El 82 (101)
.+.+.++|.+|.+...++-+.|-+++..+ +--+.....++..+|+-|+.++++..-+|.-|+..... -++..++.|=
T Consensus 826 ~q~~~~~ia~he~ri~~i~~r~~~m~~~~--~f~aedvk~~~~~L~~~~~slk~ka~~r~~dle~s~q~-~qy~ad~~ea 902 (2399)
T KOG0040|consen 826 HQALLAEIANHEPRIQEVTSRGNKMVEEG--HFAAEDVRSRLKSLNQNWESLKAKASQRRQDLEDSLQA-QQYLADANEA 902 (2399)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH-HHHHHHHhhH
Confidence 46889999999999999999999999886 44566679999999999999999999888888766544 4555666666
Q ss_pred hhhhhh
Q psy11246 83 IDTLAF 88 (101)
Q Consensus 83 i~WL~~ 88 (101)
-.|...
T Consensus 903 e~w~~e 908 (2399)
T KOG0040|consen 903 ESWMRE 908 (2399)
T ss_pred HHHhhc
Confidence 667543
No 9
>KOG0040|consensus
Probab=81.24 E-value=6.8 Score=39.18 Aligned_cols=85 Identities=25% Similarity=0.221 Sum_probs=67.8
Q ss_pred HHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhh
Q psy11246 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPI 83 (101)
Q Consensus 4 ~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli 83 (101)
+-+++.|.+|.+-|.++|.--.-++.+ |.-+.+-.+++-+..|+|--.|+.=...+|++|...-..---+++.++| -
T Consensus 1633 qlle~di~a~ed~~kd~n~qadSll~s--~~f~~~~i~dkr~~i~~r~~~V~~laa~~r~kl~ea~~L~qff~d~~De-e 1709 (2399)
T KOG0040|consen 1633 QLLEADIVAHEDRLKDLNTQADSLLES--GQFDTDQIVEKRDNINKRFLNVKELAAARRAKLNEALALHQFFRDIDDE-E 1709 (2399)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhh--cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-H
Confidence 357899999999999999887555544 3457778899999999999999999999999998776655555555544 8
Q ss_pred hhhhhhhh
Q psy11246 84 DTLAFTTL 91 (101)
Q Consensus 84 ~WL~~~~~ 91 (101)
.|+.+.-+
T Consensus 1710 swikek~l 1717 (2399)
T KOG0040|consen 1710 SWIKEKKL 1717 (2399)
T ss_pred HHHHHHHH
Confidence 89987643
No 10
>PRK14156 heat shock protein GrpE; Provisional
Probab=71.25 E-value=25 Score=26.57 Aligned_cols=62 Identities=10% Similarity=0.187 Sum_probs=45.7
Q ss_pred HHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q psy11246 5 DLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSL 71 (101)
Q Consensus 5 eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~ 71 (101)
++++++++.. -..|-+.++...........++.+++.+..+|.-+.+...|.|+|.+...+.
T Consensus 9 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~ 70 (177)
T PRK14156 9 EVEEEVEATE-----TEETVEEVVEETPEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQ 70 (177)
T ss_pred HHHHHHhhhh-----HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554433 2334466666665666667899999999999999999999999999865554
No 11
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=71.21 E-value=15 Score=30.93 Aligned_cols=50 Identities=10% Similarity=-0.035 Sum_probs=40.6
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhh
Q psy11246 34 QDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPI 83 (101)
Q Consensus 34 ~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli 83 (101)
..+...+..-++.+..+-.++..+..++..++++..+...+|+..|..+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34667788888888888889998888888888888888888887776653
No 12
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=70.32 E-value=30 Score=23.22 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhhhhhccc---ch-------hhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 4 KDLQAEIESHKDVYSSLN---TS-------GKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 4 ~eLqaeI~sh~~v~~sLn---~t-------G~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
..|+..+.-|..+...|. .. |..++..- -.+--..|..+++.+..+=..+.++...+...+......+.
T Consensus 23 ~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~-~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 23 QKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQE-KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666543333 22 33444432 34555667777777777777777777777777776666666
Q ss_pred hhh
Q psy11246 74 TLQ 76 (101)
Q Consensus 74 ~L~ 76 (101)
+++
T Consensus 102 ~~~ 104 (105)
T cd00632 102 QAQ 104 (105)
T ss_pred HHh
Confidence 554
No 13
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=67.49 E-value=16 Score=26.03 Aligned_cols=72 Identities=11% Similarity=0.204 Sum_probs=43.3
Q ss_pred hHHHHHHHhhhhhhhhcccchh----hhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhh-------hhh
Q psy11246 3 KKDLQAEIESHKDVYSSLNTSG----KRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIF-------YSL 71 (101)
Q Consensus 3 ~~eLqaeI~sh~~v~~sLn~tG----~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~-------~~~ 71 (101)
.+.++.++.+.+.-+.++...- ..|+..+...+ .+.....++..+++++.+++.|.... ++.
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e-------~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENE-------ELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4567777777777777776655 44554442222 22344566677777777777776643 455
Q ss_pred HhhhhccCch
Q psy11246 72 SVTLQPGIQY 81 (101)
Q Consensus 72 ~~~L~~~L~E 81 (101)
+.+|+.++.+
T Consensus 98 veEL~~Dv~D 107 (120)
T PF12325_consen 98 VEELRADVQD 107 (120)
T ss_pred HHHHHHHHHH
Confidence 5666666555
No 14
>PRK14142 heat shock protein GrpE; Provisional
Probab=67.07 E-value=16 Score=28.92 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=35.9
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 33 SQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 33 s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
...|++.+..+++.++.+|--+.+...|.|+|.+...+...
T Consensus 38 ~~~~~~~~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~ 78 (223)
T PRK14142 38 AAADAAHTEDKVAELTADLQRVQADFANYRKRALRDQQAAA 78 (223)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999997666554
No 15
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.13 E-value=35 Score=21.77 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=42.7
Q ss_pred hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhh
Q psy11246 3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIF 68 (101)
Q Consensus 3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~ 68 (101)
|..|+++|-+++.+-.-|+.. ..+--.+..||.+.-.|=.++-.++..++.+++++
T Consensus 3 QsaL~~EirakQ~~~eEL~kv----------k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 3 QSALEAEIRAKQAIQEELTKV----------KSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347899999999766555433 22334568899999999999999999999988765
No 16
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.93 E-value=43 Score=22.71 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=42.0
Q ss_pred hHHHHHHHhhhhhhhhcccch----------hhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Q psy11246 3 KKDLQAEIESHKDVYSSLNTS----------GKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLS 72 (101)
Q Consensus 3 ~~eLqaeI~sh~~v~~sLn~t----------G~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~ 72 (101)
...|+.++.-|.-|...|+.. |..+|..- -.+-.+.|..|++.+..+=..+.++...++..++...+.+
T Consensus 26 ~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~-~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 26 KQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTD-KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheec-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777665555443 34444442 3444477888888887777777777666666665544443
Q ss_pred h
Q psy11246 73 V 73 (101)
Q Consensus 73 ~ 73 (101)
.
T Consensus 105 ~ 105 (110)
T TIGR02338 105 Q 105 (110)
T ss_pred H
Confidence 3
No 17
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=63.80 E-value=38 Score=23.18 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=36.5
Q ss_pred HHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy11246 5 DLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAI 61 (101)
Q Consensus 5 eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~i 61 (101)
.|++.+..|. ..++.- +.-+..|++.+|-..|+.++.+|+-+=.++.+++..+
T Consensus 39 ~l~~~~~~~~---~Rl~~l-E~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 39 KLEERLDEHD---RRLQAL-ETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHH---HHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666666 333333 4457889999999999999888887766666665554
No 18
>PRK14164 heat shock protein GrpE; Provisional
Probab=63.05 E-value=25 Score=27.55 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=35.5
Q ss_pred CCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhh
Q psy11246 32 TSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVT 74 (101)
Q Consensus 32 ~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~ 74 (101)
..+.+...|+.+++.+..+|--+.+...|.|+|.+...+...+
T Consensus 74 ~~~~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~ 116 (218)
T PRK14164 74 ADDGEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIE 116 (218)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999999999999866655443
No 19
>COG3418 Flagellar biosynthesis/type III secretory pathway chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=60.79 E-value=11 Score=28.11 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=39.5
Q ss_pred HHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Q psy11246 5 DLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVML-QRRLDEMNQRWHHLKNRSLAIRM 63 (101)
Q Consensus 5 eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~L-q~kLd~mN~RW~~l~~ks~~iR~ 63 (101)
+||.-+..-.+.|+.|+-+++...... .+-..+. -++-+++|.||.+|.......|.
T Consensus 39 ~lq~i~~qK~sLl~~L~~l~Q~R~~~~--~~ani~~dye~~~~L~erwq~i~~~~~~lrq 96 (146)
T COG3418 39 VLQEITEQKSSLLATLDYLDQDRAKEP--NEANIFPDYESNNDLNERWQEIIELTERLRQ 96 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhch--hhcccCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 677778888888999999987665432 1111111 13556799999999998887764
No 20
>PRK14161 heat shock protein GrpE; Provisional
Probab=58.76 E-value=37 Score=25.60 Aligned_cols=47 Identities=6% Similarity=0.068 Sum_probs=36.6
Q ss_pred hhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 25 KRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 25 ~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
++++... .+.-..|+.+++.+..+|--+.+...|.|+|.+...+...
T Consensus 18 ~~~~~~~--~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~ 64 (178)
T PRK14161 18 EEIVETA--NPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAK 64 (178)
T ss_pred Hhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554 3455678999999999999999999999999986655443
No 21
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=55.11 E-value=44 Score=25.38 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=50.3
Q ss_pred hcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHH-HHhhHhhhhhHhhhhccCchhh
Q psy11246 18 SSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAI-RMQSLIFYSLSVTLQPGIQYPI 83 (101)
Q Consensus 18 ~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~i-R~RLe~~~~~~~~L~~~L~Eli 83 (101)
+..+..-+.++..| +...+..+.+.+.+.-.+|++|.++...+ -++.++..+.+........|.+
T Consensus 62 ~~~s~~~~~~vk~L-~k~~~~~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv 127 (165)
T PF09602_consen 62 REFSDLYEEYVKQL-RKATGNSLNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQISKQYEETV 127 (165)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhHHHHH
Confidence 44444446778888 66899999999999999999999999775 3556777777777777776654
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.65 E-value=78 Score=24.33 Aligned_cols=11 Identities=18% Similarity=0.462 Sum_probs=4.4
Q ss_pred HHHHHHHhhhh
Q psy11246 4 KDLQAEIESHK 14 (101)
Q Consensus 4 ~eLqaeI~sh~ 14 (101)
++||.++..=+
T Consensus 96 p~le~el~~l~ 106 (206)
T PRK10884 96 PDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 23
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=47.19 E-value=75 Score=20.40 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=39.3
Q ss_pred hhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhh
Q psy11246 24 GKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTL 75 (101)
Q Consensus 24 G~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L 75 (101)
|.+++..- ..+-...|..+.+.+...=..+.++...+..+++.....+.++
T Consensus 52 G~~fv~~~-~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 52 GKMFVKQD-KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp TTEEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666663 5677788899998888888888888888888888776665544
No 24
>PRK14151 heat shock protein GrpE; Provisional
Probab=46.59 E-value=70 Score=24.03 Aligned_cols=36 Identities=8% Similarity=-0.043 Sum_probs=30.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 38 VMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 38 ~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
..|+.+++++..+|--+.+...|.|+|.+...+...
T Consensus 30 ~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~ 65 (176)
T PRK14151 30 QELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAH 65 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999997665443
No 25
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=45.28 E-value=89 Score=20.67 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=46.5
Q ss_pred HHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhh
Q psy11246 5 DLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQ 76 (101)
Q Consensus 5 eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~ 76 (101)
++...|..+..+...+|.+.+.+..-- ...+.||..+..+-..=.+-+.+++.-|+--......|.
T Consensus 12 d~~~~l~~Q~~~l~~ln~tn~~L~~~n------~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk 77 (88)
T PF10241_consen 12 DLDEILALQAQTLGRLNKTNEELLNLN------DLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLK 77 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888877775432 345788888888887766666666666665555554444
No 26
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=44.52 E-value=67 Score=24.30 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=32.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhh
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVT 74 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~ 74 (101)
.-..|+.++++++.+.--+.+...++|+|++...+...+
T Consensus 44 ~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k 82 (193)
T COG0576 44 EIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKK 82 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999999999999866555443
No 27
>PRK14155 heat shock protein GrpE; Provisional
Probab=43.51 E-value=79 Score=24.46 Aligned_cols=38 Identities=3% Similarity=-0.045 Sum_probs=32.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
....|+.+++.+..+|--+.+...|.|+|.+...+...
T Consensus 21 ~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~ 58 (208)
T PRK14155 21 EIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDAR 58 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999997665543
No 28
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=43.45 E-value=61 Score=25.84 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=42.6
Q ss_pred hhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCch
Q psy11246 25 KRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQY 81 (101)
Q Consensus 25 ~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~E 81 (101)
++|+..-+-+ -.+.|+..+-+||+.+...+..++++++....++..+..+..+
T Consensus 167 e~L~~vYP~~----ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~ 219 (259)
T PF08657_consen 167 EKLCNVYPLP----GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSD 219 (259)
T ss_pred HHHHHhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 5555555322 4589999999999999999999999999999999888665443
No 29
>PRK14147 heat shock protein GrpE; Provisional
Probab=43.38 E-value=85 Score=23.46 Aligned_cols=37 Identities=5% Similarity=-0.109 Sum_probs=31.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLS 72 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~ 72 (101)
....|+.+++.+..++--+.+...|.|+|.+...+..
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~ 62 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKRIARDVEQA 62 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999998665544
No 30
>PRK14163 heat shock protein GrpE; Provisional
Probab=42.91 E-value=62 Score=25.32 Aligned_cols=37 Identities=11% Similarity=-0.064 Sum_probs=30.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 37 AVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 37 a~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
-..|+.+++.+..+|--+.+...|.|+|.+...+...
T Consensus 49 l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~ 85 (214)
T PRK14163 49 LDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVK 85 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999986665543
No 31
>PRK09039 hypothetical protein; Validated
Probab=42.80 E-value=78 Score=25.86 Aligned_cols=45 Identities=16% Similarity=0.051 Sum_probs=27.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCch
Q psy11246 37 AVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQY 81 (101)
Q Consensus 37 a~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~E 81 (101)
+..|+.+|+.+-...++-..++.-+++.+++-..++..++..|.+
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666665555544443
No 32
>PRK14159 heat shock protein GrpE; Provisional
Probab=41.06 E-value=96 Score=23.41 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=32.7
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 35 DDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 35 ~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
+....|+.+++.+..+|--+.+...+.|+|.+...+...
T Consensus 30 ~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~ 68 (176)
T PRK14159 30 VEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAM 68 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999986655443
No 33
>PRK14162 heat shock protein GrpE; Provisional
Probab=40.48 E-value=73 Score=24.43 Aligned_cols=38 Identities=3% Similarity=0.029 Sum_probs=31.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhh
Q psy11246 37 AVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVT 74 (101)
Q Consensus 37 a~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~ 74 (101)
-..|+.+++.+..+|--+.+...|.|+|.+...+...+
T Consensus 48 l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~ 85 (194)
T PRK14162 48 IADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIK 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999866554443
No 34
>PRK14158 heat shock protein GrpE; Provisional
Probab=40.22 E-value=97 Score=23.75 Aligned_cols=38 Identities=3% Similarity=-0.160 Sum_probs=31.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhh
Q psy11246 37 AVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVT 74 (101)
Q Consensus 37 a~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~ 74 (101)
...|+.+++++..+|--+.+...|.|+|.+...+...+
T Consensus 49 l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~ 86 (194)
T PRK14158 49 LAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLK 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888999999999999999999999976665443
No 35
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.17 E-value=88 Score=24.03 Aligned_cols=20 Identities=15% Similarity=0.532 Sum_probs=11.5
Q ss_pred hHHHHHHhHHHHHHHHHHHH
Q psy11246 36 DAVMLQRRLDEMNQRWHHLK 55 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~ 55 (101)
+-..|+.+|++++..|+...
T Consensus 101 el~~l~~~l~~~~~~~~~~~ 120 (206)
T PRK10884 101 QVKTLTDKLNNIDNTWNQRT 120 (206)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 34455666666666666433
No 36
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=40.15 E-value=81 Score=20.35 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=26.0
Q ss_pred hhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy11246 25 KRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAI 61 (101)
Q Consensus 25 ~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~i 61 (101)
++++..|+++.|...|..++..+-..=+.+.+.+.+.
T Consensus 16 ~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~ 52 (102)
T PF14523_consen 16 EKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISEL 52 (102)
T ss_dssp HHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999877776666666655554
No 37
>PRK14157 heat shock protein GrpE; Provisional
Probab=40.09 E-value=94 Score=24.60 Aligned_cols=39 Identities=5% Similarity=-0.108 Sum_probs=32.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhh
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVT 74 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~ 74 (101)
+-..|+.+++.+..+|--+.+...|.|+|.+...+...+
T Consensus 85 ~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~ 123 (227)
T PRK14157 85 PLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQ 123 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999876665444
No 38
>PRK14154 heat shock protein GrpE; Provisional
Probab=38.88 E-value=1e+02 Score=23.97 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=31.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLS 72 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~ 72 (101)
....|+.+++.+..++--+.+...|.|+|.+...+..
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~ 96 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADI 96 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999998665544
No 39
>PRK14141 heat shock protein GrpE; Provisional
Probab=38.49 E-value=1e+02 Score=23.91 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=32.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
.-..|+.+++.+..++--..+...+.|+|.+...+...
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~ 76 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADAR 76 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999986665543
No 40
>PRK14143 heat shock protein GrpE; Provisional
Probab=38.11 E-value=80 Score=24.93 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=30.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Q psy11246 37 AVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLS 72 (101)
Q Consensus 37 a~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~ 72 (101)
-..|+.+++.+..++--+.+...|.|+|.+...+..
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~ 111 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDNFRKRTSREQEDL 111 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888999999999999999999999998655443
No 41
>PRK14145 heat shock protein GrpE; Provisional
Probab=37.69 E-value=1.1e+02 Score=23.52 Aligned_cols=37 Identities=16% Similarity=-0.100 Sum_probs=30.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 37 AVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 37 a~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
...++.+++.+..+|--+.+...+.|+|.+...+...
T Consensus 54 l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~ 90 (196)
T PRK14145 54 LQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMV 90 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999999986665543
No 42
>PRK14144 heat shock protein GrpE; Provisional
Probab=37.11 E-value=1.2e+02 Score=23.54 Aligned_cols=38 Identities=5% Similarity=-0.096 Sum_probs=31.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
....|+.+++++..+|--+.+...|.|+|.+...+...
T Consensus 53 ~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~ 90 (199)
T PRK14144 53 QLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAH 90 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999986655443
No 43
>PRK14148 heat shock protein GrpE; Provisional
Probab=37.01 E-value=1.2e+02 Score=23.35 Aligned_cols=38 Identities=16% Similarity=-0.003 Sum_probs=31.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
.-..|+.+++.+..+|--..+...|.|+|.+...+...
T Consensus 48 ~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~ 85 (195)
T PRK14148 48 TIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNAR 85 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888999999999999999999999986665544
No 44
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=36.01 E-value=1.4e+02 Score=22.77 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=42.7
Q ss_pred HHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCch
Q psy11246 5 DLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQY 81 (101)
Q Consensus 5 eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~E 81 (101)
.|+.++..-..-+-.+|.. ++..|. ..-.+|..|+.+|.++..+..+|..=..+-..+..+++....+
T Consensus 147 ~le~~l~~~k~~ie~vN~~-RK~~Q~--------~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 147 RLEKELAKLKKEIEEVNRE-RKRRQE--------EAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555445555554 222222 1356788899999999999999887666666666666554433
No 45
>PRK14139 heat shock protein GrpE; Provisional
Probab=35.29 E-value=1e+02 Score=23.51 Aligned_cols=39 Identities=8% Similarity=0.073 Sum_probs=32.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhh
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVT 74 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~ 74 (101)
.-..|+.+++.+..+|--+.+...|.|+|.+...+...+
T Consensus 40 ~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~ 78 (185)
T PRK14139 40 ELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHK 78 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999976665443
No 46
>PRK14149 heat shock protein GrpE; Provisional
Probab=35.16 E-value=1.3e+02 Score=23.09 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=33.0
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 34 QDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 34 ~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
.+....|+.+++.+..+|--+.+...|.|+|.+...+...
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~ 81 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMAL 81 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445668999999999999999999999999986665543
No 47
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=35.15 E-value=91 Score=22.18 Aligned_cols=42 Identities=19% Similarity=0.065 Sum_probs=32.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccC
Q psy11246 38 VMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGI 79 (101)
Q Consensus 38 ~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L 79 (101)
..|+..-+..++|=++|.+++.++++-++....+=.+|+.++
T Consensus 47 ~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~ 88 (107)
T PF09304_consen 47 QSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRL 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788999999999999999999988666555555443
No 48
>PRK14153 heat shock protein GrpE; Provisional
Probab=34.85 E-value=1.3e+02 Score=23.06 Aligned_cols=37 Identities=5% Similarity=0.071 Sum_probs=31.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLS 72 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~ 72 (101)
+-..|+.+++.+..+|--+.+...|.|+|.+...+..
T Consensus 41 ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~ 77 (194)
T PRK14153 41 ETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEEN 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999999998555443
No 49
>PRK14146 heat shock protein GrpE; Provisional
Probab=34.38 E-value=1.3e+02 Score=23.31 Aligned_cols=37 Identities=5% Similarity=0.122 Sum_probs=31.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 37 AVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 37 a~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
...|+.+++.+..+|--+.+...|.|+|.+...+...
T Consensus 63 l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~ 99 (215)
T PRK14146 63 LDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIR 99 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999986655443
No 50
>PRK14140 heat shock protein GrpE; Provisional
Probab=34.24 E-value=1.4e+02 Score=22.86 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=31.7
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHh
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSV 73 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~ 73 (101)
...-++.+++.+..+|--..+...|.|+|.+...+...
T Consensus 45 ~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~ 82 (191)
T PRK14140 45 KIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAE 82 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999986655443
No 51
>PRK11637 AmiB activator; Provisional
Probab=33.10 E-value=1.9e+02 Score=23.78 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=6.1
Q ss_pred hHHHHHHHhhhh
Q psy11246 3 KKDLQAEIESHK 14 (101)
Q Consensus 3 ~~eLqaeI~sh~ 14 (101)
+++++.+|...+
T Consensus 49 l~~l~~qi~~~~ 60 (428)
T PRK11637 49 LKSIQQDIAAKE 60 (428)
T ss_pred HHHHHHHHHHHH
Confidence 344555555554
No 52
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.06 E-value=1.1e+02 Score=22.00 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=40.4
Q ss_pred hhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhcc
Q psy11246 15 DVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPG 78 (101)
Q Consensus 15 ~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~ 78 (101)
.+..+|..+-+++.+.+ ..|-.|||.+...=..+++++.++|.=++.....+..++..
T Consensus 54 ~vs~~l~~tKkhLsqRI------d~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 54 QVSESLSSTKKHLSQRI------DRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQM 111 (126)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34667777777777777 23556777777777888888888887777766666665543
No 53
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=32.89 E-value=1.6e+02 Score=20.43 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=36.3
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhcc
Q psy11246 34 QDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPG 78 (101)
Q Consensus 34 ~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~ 78 (101)
.+--.+|.+|++.++..=..+.+....++.+++.-.+.+.+++..
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568888999999998999999999998888888877777654
No 54
>PF11624 M157: MHC class I-like protein M157; InterPro: IPR021073 This entry represents the M157 glycoprotein, a divergent form of MHC class I-like proteins which is the protein product of Murid herpesvirus 1. This protein is unique in its ability to engage both activating (Ly49H) and inhibitory (Ly49I) natural killer cell receptors. M157 is involved in intra- and intermolecular interacts within and between its domains to form a compact MHC-like molecule []. ; PDB: 2NYK_A.
Probab=31.88 E-value=60 Score=25.79 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=23.7
Q ss_pred cccCCchhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy11246 29 GSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAI 61 (101)
Q Consensus 29 ~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~i 61 (101)
.....+.+-..|...-+.+-.||.++|++.+++
T Consensus 113 ~~~a~g~~v~~L~~n~~~I~~RW~~vC~~i~~~ 145 (256)
T PF11624_consen 113 VSYARGLGVQLLRNNSDSIRKRWRSVCRKIVDL 145 (256)
T ss_dssp ------HHHHHHHTTHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCcchhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 344466677788888999999999999999764
No 55
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=31.54 E-value=1.4e+02 Score=18.83 Aligned_cols=57 Identities=9% Similarity=0.094 Sum_probs=30.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCc---hhhhhhhhhhhhhhhh
Q psy11246 40 LQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQ---YPIDTLAFTTLSDITS 96 (101)
Q Consensus 40 Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~---Eli~WL~~~~~~~~~~ 96 (101)
+++|+.....+=+++..+...+-.+.+........+..+|. +-..|+-.+-..-+.+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGaiI~ 63 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGAIIT 63 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555444444444 4467888776655544
No 56
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=30.24 E-value=1.9e+02 Score=22.06 Aligned_cols=82 Identities=15% Similarity=0.092 Sum_probs=54.2
Q ss_pred hHHHHHHHhhhhhhhhcccchhhhhhcccCCc-hhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCch
Q psy11246 3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQ-DDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQY 81 (101)
Q Consensus 3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~-~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~E 81 (101)
..+|+++|......+.++..+..........- +--..|..+|...-.|....-+++..+..++..-.+.+.........
T Consensus 143 i~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~ 222 (237)
T PF00261_consen 143 IKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKK 222 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888876665544222 23567788888888888777777777766666555555554444444
Q ss_pred hhh
Q psy11246 82 PID 84 (101)
Q Consensus 82 li~ 84 (101)
+-.
T Consensus 223 ~~~ 225 (237)
T PF00261_consen 223 VQE 225 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 57
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=30.20 E-value=83 Score=17.76 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=15.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHH
Q psy11246 35 DDAVMLQRRLDEMNQRWHHLKNRS 58 (101)
Q Consensus 35 ~Da~~Lq~kLd~mN~RW~~l~~ks 58 (101)
.+..-.++|.+-+|+-|..++-+.
T Consensus 6 sNr~Ki~e~t~iLN~eWk~lRiQp 29 (30)
T PF11616_consen 6 SNRQKIQERTDILNEEWKKLRIQP 29 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----
T ss_pred hhHHHHHHHHHHHHHHHHHhccCC
Confidence 345567889999999999887553
No 58
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=30.00 E-value=1.9e+02 Score=21.65 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=10.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHh
Q psy11246 41 QRRLDEMNQRWHHLKNRSLAIRMQSLI 67 (101)
Q Consensus 41 q~kLd~mN~RW~~l~~ks~~iR~RLe~ 67 (101)
+.|+..+-.+-..+++++...|.|+++
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 59
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=29.93 E-value=2.7e+02 Score=24.02 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=38.8
Q ss_pred hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy11246 3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFY 69 (101)
Q Consensus 3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~ 69 (101)
...|+..|..+..-+.+++ ..|+. +..|-..+..+++++|.+=+.+..+-.+.|.+|..--
T Consensus 61 ~~kL~~~lk~~e~~i~~~~---~ql~~---s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L 121 (420)
T COG4942 61 RAKLEKQLKSLETEIASLE---AQLIE---TADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQL 121 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHH---HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666663333333 33433 3556677788888888888888887777777775433
No 60
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=29.66 E-value=1.9e+02 Score=20.15 Aligned_cols=69 Identities=12% Similarity=0.210 Sum_probs=50.2
Q ss_pred cccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCc-------hhhhhhhh
Q psy11246 19 SLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQ-------YPIDTLAF 88 (101)
Q Consensus 19 sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~-------Eli~WL~~ 88 (101)
.++...+.|.++++.++ ...+....+.+..+=..+.+.+..+...++...+.+..+..... .+...+..
T Consensus 4 ~~~R~~q~~~~k~g~~~-~t~~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 79 (229)
T PF03114_consen 4 KINRAKQRVKQKLGKSE-KTEIDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIE 79 (229)
T ss_dssp HHHHHHHHHHHHHTSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHH
Confidence 45666778888885444 43478888889888888988888888888888887776666555 55555544
No 61
>PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues. Haemerythrin is an oxygen-binding protein found in the vascular system and coelemic fluid, or in muscles (myohaemerythrin) in invertebrates []. Many of the homologous proteins found in prokaryotes are multi-domain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (IPR000160 from INTERPRO) and methyl-accepting chemotaxis protein (MCP) signalling domain (IPR004089 from INTERPRO). Most haemerythrins are oxygen-carriers with a bound non-haem iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. The prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium. Haemerythrins and myohaemerythrins [, ] are small proteins of about 110 to 129 amino acid residues that bind two iron atoms. They are left-twisted 4-alpha-helical bundles, which provide a hydrophobic pocket where dioxygen binds as a peroxo species, interacting with adjacent aliphatic side chains via van der Waals forces []. In both haemerythrins and myohaemerythrins, the active centre is a binuclear iron complex, bound directly to the protein via 7 amino acid side chains [], 5 His, 1 Glu and 1 Asp []. Ovohaemerythrin [], a yolk protein from the leech Theromyzon tessulatum seems to belong to this family of proteins, it may play a role in the detoxification of free iron after a blood meal []. This entry represents a haemerythrin/HHE cation-binding motif that occurs as a duplicated domain in haemerythrin and related proteins. This domain binds iron in haemerythrin, but can bind other metals in related proteins, such as cadmium in a Nereis diversicolor protein (P80255 from SWISSPROT). A bacterial protein, Q7WX96 from SWISSPROT, is a regulator of response to NO, which suggests a different set-up for its metal ligands. A protein from Cryptococcus neoformans (Filobasidiella neoformans) that contains haemerythrin/HHE cation-binding motifs is also involved in NO response []. A Staphylococcus aureus protein (P72360 from SWISSPROT) has been noted to be important when the organism switches to living in environments with low oxygen concentrations; perhaps this protein acts as an oxygen store or scavenger.; PDB: 3CAX_A 3V5Z_B 3U9M_G 3V5Y_A 3U9J_B 3V5X_A 2MHR_A 1A7E_A 1A7D_A 2IGF_P ....
Probab=28.94 E-value=1.5e+02 Score=18.59 Aligned_cols=45 Identities=7% Similarity=0.022 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhh---hhHhhhhccCchhhhhhhhh
Q psy11246 45 DEMNQRWHHLKNRSLAIRMQSLIFY---SLSVTLQPGIQYPIDTLAFT 89 (101)
Q Consensus 45 d~mN~RW~~l~~ks~~iR~RLe~~~---~~~~~L~~~L~Eli~WL~~~ 89 (101)
+.|..--..++.....+...+.... ..+..|...+..+..||..-
T Consensus 74 ~~~~~eH~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~H 121 (133)
T PF01814_consen 74 AELRREHEEIRALLDELEEALARYSGDEEDAEELREALRALAEWLRRH 121 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhCccccchHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666655544 77888888899999998754
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.41 E-value=2.6e+02 Score=22.27 Aligned_cols=78 Identities=12% Similarity=0.151 Sum_probs=48.7
Q ss_pred HHHHHHHhhhhhhhhcccchhhhh---hcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCc
Q psy11246 4 KDLQAEIESHKDVYSSLNTSGKRL---LGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQ 80 (101)
Q Consensus 4 ~eLqaeI~sh~~v~~sLn~tG~~I---~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~ 80 (101)
.+++..+..++.-+..++.-.... +....+......|+..++..+.|=+.+..+..++..+.++-.+....+++.+.
T Consensus 55 e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 55 EDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555554444444433222 24444555667777788888888888888887777777777777666665554
Q ss_pred h
Q psy11246 81 Y 81 (101)
Q Consensus 81 E 81 (101)
.
T Consensus 135 ~ 135 (239)
T COG1579 135 R 135 (239)
T ss_pred H
Confidence 3
No 63
>PRK14160 heat shock protein GrpE; Provisional
Probab=28.38 E-value=1.9e+02 Score=22.49 Aligned_cols=36 Identities=11% Similarity=-0.015 Sum_probs=30.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Q psy11246 37 AVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLS 72 (101)
Q Consensus 37 a~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~ 72 (101)
-..|+.+++.+..++--+.+...+.|+|.+......
T Consensus 70 l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 70 NKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999998665544
No 64
>PHA03247 large tegument protein UL36; Provisional
Probab=26.94 E-value=2.4e+02 Score=30.37 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=56.5
Q ss_pred hhhhhcccchh-hhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhhh
Q psy11246 14 KDVYSSLNTSG-KRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPID 84 (101)
Q Consensus 14 ~~v~~sLn~tG-~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli~ 84 (101)
.++++-....+ .++...| +++....|..|..++..==++.+.+-.+|+.|.+++...+..+.++|+.|..
T Consensus 960 ed~vrqak~l~~~~~~~~L-s~e~r~rl~~r~~evEt~~~~aR~r~~~i~~~r~~~y~~L~~lLrPl~~FvG 1030 (3151)
T PHA03247 960 EDALRQAKAMAAAKLTDEL-SPEARERLRARARAIEAMLEEARERAEAARAARERFFQKLQGVLRPLPDFGG 1030 (3151)
T ss_pred HHHHHHHHHhhhhhhhccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 33444444444 4555556 8999999999999999889999999999999999999999999999988763
No 65
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=26.86 E-value=1.1e+02 Score=25.63 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhHhhhhhHhhhhccCchhhhhhhhhhhhh
Q psy11246 53 HLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTTLSD 93 (101)
Q Consensus 53 ~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli~WL~~~~~~~ 93 (101)
++++++.+++.++++......++...+.+++..|-.-+..|
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~ 113 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHES 113 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 45566666777777777777777777777776665554433
No 66
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=25.96 E-value=2.2e+02 Score=19.97 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=31.3
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhH
Q psy11246 35 DDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLS 72 (101)
Q Consensus 35 ~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~ 72 (101)
+.-..|+.+++.+..+.....+...+.|.|++......
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~ 55 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEA 55 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556889999999999999999999999998765533
No 67
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.83 E-value=2.5e+02 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=18.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy11246 36 DAVMLQRRLDEMNQRWHHLKNRSLAIR 62 (101)
Q Consensus 36 Da~~Lq~kLd~mN~RW~~l~~ks~~iR 62 (101)
+-...+.+++.++..+.++.++..+++
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777777777
No 68
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=25.77 E-value=81 Score=20.68 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy11246 47 MNQRWHHLKNRSLAIRMQ 64 (101)
Q Consensus 47 mN~RW~~l~~ks~~iR~R 64 (101)
-+.||+.|-+++.+.|.+
T Consensus 19 ~~~~W~~vl~~v~~~r~~ 36 (86)
T smart00542 19 PEKCWEMVLERVQEARIV 36 (86)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577999999999999976
No 69
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=25.58 E-value=1.3e+02 Score=19.91 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=31.6
Q ss_pred chhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhh
Q psy11246 34 QDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTL 75 (101)
Q Consensus 34 ~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L 75 (101)
.+-..++.+|++.++..=..+.++...++.++........++
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568888888888888888888888888887666655544
No 70
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=25.42 E-value=2e+02 Score=18.86 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=16.3
Q ss_pred HHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHh
Q psy11246 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRR 43 (101)
Q Consensus 4 ~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~k 43 (101)
.+++.+++.-+ +.-|.-+..|-+...+++++..|..+
T Consensus 39 r~l~~~~e~lr---~~rN~~sk~I~~~~~~~~~~~~l~~e 75 (108)
T PF02403_consen 39 RELQQELEELR---AERNELSKEIGKLKKAGEDAEELKAE 75 (108)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHCHTTCCTHHHHHH
T ss_pred HHHHHHHHHHH---HHHhHHHHHHHHHhhCcccHHHHHHH
Confidence 34444444444 44444445544443333444433333
No 71
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=25.02 E-value=78 Score=20.33 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q psy11246 47 MNQRWHHLKNRSLAIRMQSL 66 (101)
Q Consensus 47 mN~RW~~l~~ks~~iR~RLe 66 (101)
.+.+|+.|.+++..+|....
T Consensus 23 ~~~~W~~i~~~v~~~r~~~~ 42 (86)
T PF05965_consen 23 PTEAWSEILERVNEARKQSG 42 (86)
T ss_dssp HHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 67799999999999887654
No 72
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=24.46 E-value=58 Score=26.12 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=36.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhhhhhhhhhhhh
Q psy11246 37 AVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPIDTLAFTTLSD 93 (101)
Q Consensus 37 a~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli~WL~~~~~~~ 93 (101)
....+.|.+.....|..+..++.++.+.+-. .-+++|..|+.+...++
T Consensus 25 ~~~~~~R~~~y~~~W~~~~~~Iq~il~~~n~---------~~f~~l~~Fi~~~~~~~ 72 (330)
T PF07034_consen 25 EEAVQLRYEAYQKLWSKIESRIQEILRELNS---------KLFDDLVDFIRNSHSSD 72 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhcCcc
Confidence 4467899999999999999999998877622 22667778887765543
No 73
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.21 E-value=2.3e+02 Score=18.94 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=35.4
Q ss_pred HHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q psy11246 5 DLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSL 71 (101)
Q Consensus 5 eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~ 71 (101)
.|+..|+.+.+....-+.--..| +.| ..|-+.|-.+||.--.|=+.+..--.++-.||...-+.
T Consensus 19 ~LE~~v~~r~~~~~~~~~~e~ei-~~l--~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 19 RLEKAVDRRLERDRKRDELEEEI-QRL--DADRSRLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHH-HHH--HhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554444443333444 555 45666677777766666566666556666666554443
No 74
>PRK02224 chromosome segregation protein; Provisional
Probab=24.21 E-value=2.1e+02 Score=25.51 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=32.6
Q ss_pred HHHHHHHhhhhhhhhcccchhhhhhcccCC-chhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhh
Q psy11246 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTS-QDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTL 75 (101)
Q Consensus 4 ~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s-~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L 75 (101)
.+|+..+..|+..+..+++.-+.+...+.. ..+...++.+.+.++.....+..++...+..++.-.....++
T Consensus 324 ~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el 396 (880)
T PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666655555432222111100 122233444444444555555555555554444444444433
No 75
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=23.75 E-value=1.6e+02 Score=21.71 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=36.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHhhh----------hhHhhhhccCchhhhhhhhh
Q psy11246 39 MLQRRLDEMNQRWHHLKNRSLAIRMQSLIFY----------SLSVTLQPGIQYPIDTLAFT 89 (101)
Q Consensus 39 ~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~----------~~~~~L~~~L~Eli~WL~~~ 89 (101)
-|..+|+.+|..=+.|.+.+.+...-.++.. .+-....+++.++++||.+-
T Consensus 75 ~L~e~l~~l~~v~~~l~~~~~~~~~l~~~~~~~~~l~~~~~~~r~~~~PSlAdmLewl~di 135 (168)
T PF15011_consen 75 KLRETLEELQKVRDSLSRQVRDVFQLYEQHAGLDELSLKALQQRSGVCPSLADMLEWLQDI 135 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHhccCCCCCCHHHHHHHHHHH
Confidence 3577777777777778887777777777322 22245678899999999764
No 76
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=22.84 E-value=1.2e+02 Score=25.25 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhh
Q psy11246 45 DEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPI 83 (101)
Q Consensus 45 d~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli 83 (101)
..+|..=+.+++++.+.|+|+....+.+..|++++...|
T Consensus 81 ~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~kkpi 119 (389)
T PF06216_consen 81 ISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVKKPI 119 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Confidence 346666677888889999999999999999999988766
No 77
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=22.84 E-value=1.6e+02 Score=20.00 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhH--hhhhhHhhhhccCch
Q psy11246 38 VMLQRRLDEMNQRWHHLKNRSLAIRMQSL--IFYSLSVTLQPGIQY 81 (101)
Q Consensus 38 ~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe--~~~~~~~~L~~~L~E 81 (101)
..-+.-...++.--+++.+++.+|.++|. .....++.+...+|+
T Consensus 36 ~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~ 81 (97)
T PF14966_consen 36 EAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQE 81 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 44566667799999999999999999997 666777777777766
No 78
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.27 E-value=2.8e+02 Score=19.86 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy11246 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62 (101)
Q Consensus 4 ~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR 62 (101)
.+|++++..-...+..|...=..+. +.+-...|......+..-...+..++..+|
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444443322222 222222344444444444444444444433
No 79
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=21.25 E-value=2.3e+02 Score=24.61 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=16.1
Q ss_pred chHHHHHHHhhhhhhhhcccchhhhh
Q psy11246 2 EKKDLQAEIESHKDVYSSLNTSGKRL 27 (101)
Q Consensus 2 ~~~eLqaeI~sh~~v~~sLn~tG~~I 27 (101)
..++||++|..|+ .-|..+-+++
T Consensus 3 ~~~elq~e~~~~E---~qL~~a~qkl 25 (428)
T PF00846_consen 3 TLEELQEEITQHE---QQLVIARQKL 25 (428)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3689999999998 4444444443
No 80
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=21.22 E-value=4.4e+02 Score=22.32 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=39.6
Q ss_pred cchhhhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhh
Q psy11246 21 NTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQ 76 (101)
Q Consensus 21 n~tG~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~ 76 (101)
|..=..+...+ .+|...+..-.+.+...|..|.+.+.-++.-+..+.+.+.++-
T Consensus 46 d~~i~~~~~~l--~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E 99 (473)
T PF14643_consen 46 DEEIEEIFSKL--EDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKELDEDLEELE 99 (473)
T ss_pred HHHHHHHHHHh--cCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33335666666 3455677778889999999999988888888887777666543
No 81
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.20 E-value=1.3e+02 Score=25.79 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=57.7
Q ss_pred hHHHHHHHhhhhhhhhcccchhhhhhcccCCchhHHHHHHhHHH------------HH-----HHHHHHHHHHHHHHHhh
Q psy11246 3 KKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDE------------MN-----QRWHHLKNRSLAIRMQS 65 (101)
Q Consensus 3 ~~eLqaeI~sh~~v~~sLn~tG~~I~~~L~s~~Da~~Lq~kLd~------------mN-----~RW~~l~~ks~~iR~RL 65 (101)
+.||++-+.. =|++-..|+.++ +......|+.||-. |+ -+...||.|+.++-.+|
T Consensus 10 LeeLe~kLa~-------~d~~Kd~V~~~I-~ea~~sILPlRL~FNeFi~tma~Ie~~~~~s~qeKFl~IR~KlleL~~~l 81 (379)
T PF11593_consen 10 LEELEEKLAS-------NDNSKDSVMDKI-SEAQDSILPLRLQFNEFIQTMANIEEMNNKSPQEKFLLIRSKLLELYNKL 81 (379)
T ss_pred HHHHHHHHhc-------CCchHHHHHHHH-HHHHhccccHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHH
Confidence 4566665553 234445666666 66666777777631 21 36888999999999999
Q ss_pred HhhhhhHhhhhccCchhhhhhhhh
Q psy11246 66 LIFYSLSVTLQPGIQYPIDTLAFT 89 (101)
Q Consensus 66 e~~~~~~~~L~~~L~Eli~WL~~~ 89 (101)
.+++....+||.-.+-|-...++.
T Consensus 82 Q~lS~df~~LqPLF~Ti~eyse~~ 105 (379)
T PF11593_consen 82 QELSSDFQKLQPLFDTIPEYSEKY 105 (379)
T ss_pred HHHHHHHHHhchHHhhhHHHhccc
Confidence 999999999999988888777763
No 82
>PF11621 Sbi-IV: C3 binding domain 4 of IgG-bind protein SBI; InterPro: IPR021657 This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation []. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold []. ; PDB: 2JVG_A 2JVH_A 2WY7_Q 2WY8_Q.
Probab=21.12 E-value=1.9e+02 Score=18.92 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=19.0
Q ss_pred hhhhcccCCchhHHHHHHhHHHHHH
Q psy11246 25 KRLLGSLTSQDDAVMLQRRLDEMNQ 49 (101)
Q Consensus 25 ~~I~~~L~s~~Da~~Lq~kLd~mN~ 49 (101)
+.-+.++ .++.+..+|..||.+|.
T Consensus 37 QR~VNK~-~~D~~~~~QK~LD~i~A 60 (69)
T PF11621_consen 37 QREVNKA-PMDSKNHFQKQLDQINA 60 (69)
T ss_dssp HHHHCTS--HHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-ChhHHHHHHHHHHHHhc
Confidence 5566777 78999999999999875
No 83
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=20.87 E-value=2.5e+02 Score=23.56 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=36.7
Q ss_pred hhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhh
Q psy11246 27 LLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQ 76 (101)
Q Consensus 27 I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~ 76 (101)
..+.+ ..|--..||.+++.+.++=+++.+++.-.+.+|.=+.+.-.=|+
T Consensus 168 ~~~~~-~~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~Llq 216 (323)
T PF08537_consen 168 RNPSS-NSDRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQ 216 (323)
T ss_pred cCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 34556678999999999999999999999999975544433333
No 84
>PHA03246 large tegument protein UL36; Provisional
Probab=20.79 E-value=3.6e+02 Score=29.03 Aligned_cols=59 Identities=20% Similarity=0.138 Sum_probs=51.8
Q ss_pred hhhhcccCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhhHhhhhccCchhhh
Q psy11246 25 KRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSLIFYSLSVTLQPGIQYPID 84 (101)
Q Consensus 25 ~~I~~~L~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~iR~RLe~~~~~~~~L~~~L~Eli~ 84 (101)
.++...| +++....|..|..+...==++.+.+-.+|+.|.+++...+..+.++|+.|..
T Consensus 1044 ~kl~~~L-s~e~R~rl~~Rr~evEtl~~~aR~R~~eikaar~~~Y~~L~~lLrPL~~FvG 1102 (3095)
T PHA03246 1044 AKLASSL-SSDIREKIRQKRSETETLIARLSARYAEVKAAVDGLYSSIRKLLRPLQNFAG 1102 (3095)
T ss_pred hhhhccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4555566 8999999999999988888999999999999999999999999999988763
No 85
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.69 E-value=36 Score=25.60 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=36.5
Q ss_pred chHHHHHHHhhhhhhhhcccchh-hhhhccc-------------------CCchhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy11246 2 EKKDLQAEIESHKDVYSSLNTSG-KRLLGSL-------------------TSQDDAVMLQRRLDEMNQRWHHLKNRSLAI 61 (101)
Q Consensus 2 ~~~eLqaeI~sh~~v~~sLn~tG-~~I~~~L-------------------~s~~Da~~Lq~kLd~mN~RW~~l~~ks~~i 61 (101)
.+|||+.-++.+. ++.+.- +.++++| .++.....++.+++.++..=..++++..++
T Consensus 13 ~lKELEK~~pK~~----gI~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l 88 (188)
T PF03962_consen 13 TLKELEKLAPKEK----GIVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEEL 88 (188)
T ss_pred cHHHHHHHccccc----CCchhhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777653 444444 6666666 344555556666666655555555555555
Q ss_pred HHhhHhh
Q psy11246 62 RMQSLIF 68 (101)
Q Consensus 62 R~RLe~~ 68 (101)
+.+++..
T Consensus 89 ~~~i~~~ 95 (188)
T PF03962_consen 89 EEKIEEA 95 (188)
T ss_pred HHHHHHH
Confidence 5555533
No 86
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=20.58 E-value=2.1e+02 Score=17.17 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=21.5
Q ss_pred CchhHHHHHHhHHHHHHHHHHHHH
Q psy11246 33 SQDDAVMLQRRLDEMNQRWHHLKN 56 (101)
Q Consensus 33 s~~Da~~Lq~kLd~mN~RW~~l~~ 56 (101)
++++-..+...++.++.||.....
T Consensus 25 t~e~~~~l~~~~~al~~~~~~~~e 48 (64)
T PF12644_consen 25 TKEDKKRLEEYIDALGARWGLESE 48 (64)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHH
Confidence 899999999999999999987654
Done!