RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11246
(101 letters)
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 45.7 bits (108), Expect = 2e-07
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
+ L+AE+++ + S L + + S + + ++E+ W L +L
Sbjct: 98 QSLEAEVQTKSRLMSELEKTREERFTMGHSAHEET--KAHIEELRHLWDLLLELTLEKGD 155
Query: 64 Q 64
Q
Sbjct: 156 Q 156
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 44.9 bits (106), Expect = 2e-07
Identities = 9/61 (14%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
+ +AE++++ L+ +G ++ + ++ RL E++++W L + +
Sbjct: 88 QAFEAEVQANSGAIVKLDETGNLMISE--GHFASETIRTRLMELHRQWELLLEKMREKGI 145
Query: 64 Q 64
+
Sbjct: 146 K 146
Score = 28.3 bits (63), Expect = 0.29
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 19 SLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQSL 66
S++ SG ++L + A +Q R ++ R+H K S R Q L
Sbjct: 2 SMDPSGVKVL------ETAEDIQERRQQVLDRYHRFKELSTL-RRQKL 42
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 44.6 bits (105), Expect = 5e-07
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
+ E+ RL + + + A +Q + E++ W L + R
Sbjct: 150 TAFERELHLLGVQVQQFQDVATRLQ-TAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRT 208
Query: 64 Q 64
Q
Sbjct: 209 Q 209
Score = 27.7 bits (61), Expect = 0.52
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 4 KDLQAEIESHKDV-YSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
+D E + ++N +RL+ +A + D +N+ W L R
Sbjct: 44 RDFARETGAIGQERVDNVNAFIERLID--AGHSEAATIAEWKDGLNEMWADLLELIDT-R 100
Query: 63 MQSL 66
MQ L
Sbjct: 101 MQLL 104
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 42.6 bits (100), Expect = 3e-06
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
L E+E + L +G RLL ++ + +W + I
Sbjct: 148 SALMRELELKEKKIKELQNAGDRLL--REDHPARPTVESFQAALQTQWSWMLQLCCCIE 204
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 41.9 bits (98), Expect = 5e-06
Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
+L E+E ++ ++ ++LL + + ++ M +W + +
Sbjct: 163 AELMRELEQKEESIKAVQEIAEQLLLE--NHPARLTIEAYRAAMQTQWSWILQLCQCVE 219
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 41.1 bits (96), Expect = 9e-06
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
K L+AE+ +H+ + +GK+L + +Q+RL + W LK + A
Sbjct: 152 KRLEAELAAHEPAIQGVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLAAARG 208
Score = 39.1 bits (91), Expect = 5e-05
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
+ L+A+I +H+D LN+ L+ S S D ++ + + +N R+ +K+ + A R
Sbjct: 46 QLLEADISAHEDRLKDLNSQADSLMTS--SAFDTSQVKDKRETINGRFQRIKSMAAARRA 103
Query: 64 Q 64
+
Sbjct: 104 K 104
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 41.5 bits (97), Expect = 1e-05
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
+ ++ RL + + + A +Q + E++ W L + R
Sbjct: 259 TAFERDVHLLGVQVQQFQDVATRLQTAY-AGEKAEAIQNKEQEVSAAWQALLDACAGRRT 317
Query: 64 Q 64
Q
Sbjct: 318 Q 318
Score = 35.7 bits (82), Expect = 9e-04
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
Q +E + L + + LL + + + R ++++ + LK+ + R
Sbjct: 47 LRQQRAVEDYGRNIKQLASRAQGLLSA--GHPEGEQIIRLQGQVDKHYAGLKDVAEE-RK 103
Query: 64 QSL 66
+ L
Sbjct: 104 RKL 106
Score = 31.1 bits (70), Expect = 0.041
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 4 KDLQAEIES-HKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
+D E + ++ ++N +RL+ + +A + D +N+ W L R
Sbjct: 153 RDFARETGAIGQERVDNVNAFIERLIDA--GHSEAATIAEWKDGLNEMWADLLELIDT-R 209
Query: 63 MQSL 66
MQ L
Sbjct: 210 MQLL 213
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 41.2 bits (96), Expect = 1e-05
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
L E+E + L +G RLL ++ + +W + I
Sbjct: 51 SALMRELELKEKKIKELQNAGDRLLRE--DHPARPTVESFQAALQTQWSWMLQLCCCIEA 108
Query: 64 Q 64
Sbjct: 109 H 109
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 40.3 bits (94), Expect = 2e-05
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
++ EI+ H+D Y + SG++++ + + ++L +RL+ ++ W L R R
Sbjct: 43 AGIKDEIDGHQDSYQRVKESGEKVI-QGQTDPEYLLLGQRLEGLDTGWDALG-RMWESRS 100
Query: 64 QSL 66
+L
Sbjct: 101 HTL 103
Score = 35.2 bits (81), Expect = 0.001
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
+D +E+++D S SG +L+ + ++ ++ + R ++ +
Sbjct: 150 EDFLGSMENNRDKVLSPVDSGNKLVAE--GNLYSDKIKEKVQLIEDRHRKNNEKAQEASV 207
Query: 64 Q 64
Sbjct: 208 L 208
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 39.1 bits (91), Expect = 6e-05
Identities = 11/61 (18%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
++ + EI++ + + G++LL + ++++LD ++Q L+ + RM
Sbjct: 56 QEHRTEIDARAGTFQAFEQFGQQLLAH--GHYASPEIKQKLDILDQERADLEKAWVQRRM 113
Query: 64 Q 64
Sbjct: 114 M 114
Score = 38.0 bits (88), Expect = 2e-04
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
+D I ++ ++L +L+ + + R +E+ RW LK + + R
Sbjct: 162 EDFDKAINVQEEKIAALQAFADQLIAA--GHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 39.1 bits (91), Expect = 6e-05
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
+ L+A+I +H+D LN+ L+ S S D ++ + + +N R+ +K+ A R
Sbjct: 46 QLLEADISAHEDRLKDLNSQADSLMTS--SAFDTSQVKDKRETINGRFQRIKSM-AAARR 102
Query: 64 QSL 66
L
Sbjct: 103 AKL 105
Score = 38.3 bits (89), Expect = 1e-04
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
K L+AE+ +H+ + +GK+L + +Q+RL + W LK + A
Sbjct: 152 KRLEAELAAHEPAIQGVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLAAARG 208
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 38.0 bits (88), Expect = 1e-04
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIR 62
K L+AE+ +H+ S+ +GK+L + +Q+RL + W LK + A
Sbjct: 43 KRLEAELAAHEPAIQSVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLAAARG 99
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 37.2 bits (86), Expect = 2e-04
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
+ + AEIE+ +S+ G+ LL + ++ +L ++ R + + A
Sbjct: 47 QGINAEIETRSKNFSACLELGESLLQR--QHQASEEIREKLQQVMSRRKEMNEKWEARWE 104
Query: 64 Q 64
+
Sbjct: 105 R 105
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 35.3 bits (81), Expect = 0.001
Identities = 9/54 (16%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNR 57
+ ++AEI++ D +++ GK LL + ++ +L ++ ++ + ++
Sbjct: 262 QGIKAEIDARNDSFTTCIELGKSLLAR--KHYASEEIKEKLLQLTEKRKEMIDK 313
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 34.7 bits (79), Expect = 0.002
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 2 EKKDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAI 61
+ + ++++ +H+D + + L DAV + R ++ +W L +
Sbjct: 56 KHEAFESDLAAHQDRVEQIAAIAQELNEL--DYHDAVNVNDRCQKICDQWDRLGTLTQKR 113
Query: 62 RMQ 64
R
Sbjct: 114 REA 116
Score = 30.4 bits (68), Expect = 0.066
Identities = 7/66 (10%), Positives = 17/66 (25%), Gaps = 5/66 (7%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTS-----QDDAVMLQRRLDEMNQRWHHLKNRS 58
+ +A + S+ + + S +DE+ +W +K
Sbjct: 172 EQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLV 231
Query: 59 LAIRMQ 64
Sbjct: 232 PIRDQS 237
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP:
a.7.1.1
Length = 107
Score = 33.3 bits (76), Expect = 0.003
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
+D I H+ ++L T +L+ + + ++ + ++ +RW HLK + +
Sbjct: 46 EDFDKAINGHEQKIAALQTVADQLIAQ--NHYASNLVDEKRKQVLERWRHLKEGLIE-KR 102
Query: 64 QSL 66
L
Sbjct: 103 SRL 105
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 29.1 bits (64), Expect = 0.23
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 4 KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
+ ++++ +H+D + + L DAV + R ++ +W L + R
Sbjct: 175 EAFESDLAAHQDRVEQIAAIAQELNEL--DYHDAVNVNDRCQKICDQWDRLGTLTQKRRE 232
Query: 64 Q 64
Sbjct: 233 A 233
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold,
UDP sugar pyrophospho transferase; 2.03A {Leishmania
major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Length = 630
Score = 28.7 bits (63), Expect = 0.28
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 13 HKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQR 50
H DV+S + + + S D Q +++
Sbjct: 224 HGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAA 261
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 28.7 bits (65), Expect = 0.30
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 10/37 (27%)
Query: 51 WHHLKNRSLAIRMQSLI--------FYSLSVTLQPGI 79
W LK L M +LI YS+ L PG+
Sbjct: 138 WQSLKTGQL--NMFTLIAMGIGVAWIYSMVAVLWPGV 172
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 28.3 bits (64), Expect = 0.37
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 37 AVMLQRRLDEMNQRWHHLKNRSLAIRM 63
V +Q L E+NQ+ L + L + +
Sbjct: 88 GVEMQLALREVNQQVTGLGLQPLEMGI 114
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_A
Length = 231
Score = 27.7 bits (61), Expect = 0.59
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 62 RMQSLIFYSLSVTLQPGIQYPIDTLAF 88
+M I Y + LQ G + AF
Sbjct: 8 KMLQHIDYRMRCILQDGRIFIGTFKAF 34
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 1.5
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 19/51 (37%)
Query: 40 LQRRLDEMNQRWHHL-KNRSLAI------RM-------QSLIFYSLSVTLQ 76
+Q +++ N HL + + I + QSL Y L++TL+
Sbjct: 349 VQDYVNKTNS---HLPAGKQVEISLVNGAKNLVVSGPPQSL--YGLNLTLR 394
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 3.9
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 31/115 (26%)
Query: 5 DLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLD-------EMNQRW-----H 52
+ E++ + +L+ + ++ D + + D ++Q + H
Sbjct: 430 SIYLELKVKLENEYALH---RSIV-------DHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 53 HLKNRSLAIRMQ--SLIFYSLSVTLQPGIQYPIDTLAF----TTLSDITSLIWYK 101
HLKN RM ++F L+ I++ D+ A+ + L+ + L +YK
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRF-LEQKIRH--DSTAWNASGSILNTLQQLKFYK 531
Score = 24.8 bits (53), Expect = 7.0
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 23 SGKRLLGSLTSQDDAVMLQRRLDEMNQR--WHHLKN----RSLAIRMQSLIF 68
SGK + V +M+ + W +LKN ++ +Q L++
Sbjct: 161 SGKTWVALDVCLSYKV-----QCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 24.4 bits (54), Expect = 7.4
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 37 AVMLQRRLDEMNQRWHHL-KNRSLAIRM 63
+ +++ + + Q+W + L IRM
Sbjct: 85 GIAMRKHMKVLRQQWRAQGITKPLEIRM 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.370
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,409,526
Number of extensions: 67679
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 37
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)