RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11246
         (101 letters)



>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
          gallus) [TaxId: 9031]}
          Length = 104

 Score = 36.9 bits (85), Expect = 4e-05
 Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 4  KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
          +  + +   HKD  + +  +G+ L+    +      +  ++  +  +   L+  + A R 
Sbjct: 40 EAFETDFTVHKDRVNDVCANGEDLIKK--NNHHVENITAKMKGLKGKVSDLEKAA-AQRK 96

Query: 64 QSL 66
            L
Sbjct: 97 AKL 99


>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus
           gallus) [TaxId: 9031]}
          Length = 110

 Score = 36.9 bits (85), Expect = 5e-05
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           + L+A+I +H+D    LN+    L+   +S  D   ++ + + +N R+  +K+ + A R 
Sbjct: 45  QLLEADISAHEDRLKDLNSQADSLMT--SSAFDTSQVKDKRETINGRFQRIKSMA-AARR 101

Query: 64  QSL 66
             L
Sbjct: 102 AKL 104


>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus
           gallus) [TaxId: 9031]}
          Length = 101

 Score = 36.5 bits (84), Expect = 7e-05
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 5   DLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQ 64
            L+AE+ +H+     +  +GK+L     +      +Q+RL +    W  LK  + A R Q
Sbjct: 42  RLEAELAAHEPAIQGVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLA-AARGQ 98

Query: 65  SL 66
            L
Sbjct: 99  RL 100


>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
           7242]}
          Length = 107

 Score = 36.1 bits (83), Expect = 1e-04
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           +D    I  H+   ++L T   +L+    +   + ++  +  ++ +RW HLK      + 
Sbjct: 46  EDFDKAINGHEQKIAALQTVADQLIAQ--NHYASNLVDEKRKQVLERWRHLKEGL-IEKR 102

Query: 64  QSL 66
             L
Sbjct: 103 SRL 105


>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 124

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRM 63
           +  ++++ +H+D    +    + L        DAV +  R  ++  +W  L   +   R 
Sbjct: 58  EAFESDLAAHQDRVEQIAAIAQELNEL--DYHDAVNVNDRCQKICDQWDRLGTLT-QKRR 114

Query: 64  QSL 66
           ++L
Sbjct: 115 EAL 117


>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 156

 Score = 32.0 bits (72), Expect = 0.005
 Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 4   KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRS 58
           + L+AE+++   + S L  + +               +  ++E+   W  L   +
Sbjct: 95  QSLEAEVQTKSRLMSELEKTREERFTM--GHSAHEETKAHIEELRHLWDLLLELT 147



 Score = 26.2 bits (57), Expect = 0.56
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 18 SSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRSLAIRMQ 64
          + + +SG ++L      + A  +Q R  E+  R+   K R      +
Sbjct: 8  TVVESSGPKVL------ETAEEIQERRQEVLTRYQSFKERVAERGQK 48


>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 106

 Score = 30.9 bits (69), Expect = 0.010
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 4  KDLQAEIESHKDVYSSLNTSGKRLLGSLTSQDDAVMLQRRLDEMNQRWHHLKNRS 58
            ++ EI+ H+D Y  +  SG++++    +  + ++L +RL+ ++  W  L    
Sbjct: 42 AGIKDEIDGHQDSYQRVKESGEKVIQG-QTDPEYLLLGQRLEGLDTGWDALGRMW 95


>d3bz6a2 a.4.5.75 (A:97-180) Hypothetical protein PSPTO2686
          {Pseudomonas syringae pv. tomato [TaxId: 323]}
          Length = 84

 Score = 23.5 bits (51), Expect = 3.3
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 28 LGSLTSQDDAVMLQRRLDEMNQRWHHL 54
          L  L ++  A ++ R+  +   R+ HL
Sbjct: 49 LERLIARGLATLVPRQSGQREDRYMHL 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 338,011
Number of extensions: 12326
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 12
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)