BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11249
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DJU|B Chain B, Crystal Structure Of Human Btg2
Length = 122
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
M +I+AAV FL+ L+ R+ +L+ F L E L + + +HWFPE P++G GYRC
Sbjct: 3 MLPEIAAAVGFLSSLL-RTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRC 61
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
IR+N K D I+ A +G+S + LP ELTLWVDP+EV R
Sbjct: 62 IRINH--KMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYR 106
>pdb|3DJN|B Chain B, Crystal Structure Of Mouse Tis21
Length = 118
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
M +I+AAV FL+ L+ R+ +L+ F L + L D + +HWFPE P++G GYRC
Sbjct: 2 MLPEIAAAVGFLSSLL-RTRGCVSEQRLKVFSRALQDALTDHYKHHWFPEKPSKGSGYRC 60
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
IR+N K D I+ A +G+S + LP ELTLWVDP+EV R
Sbjct: 61 IRINH--KMDPIISKVASQIGLSQPQLHRLLPSELTLWVDPYEVSYR 105
>pdb|3E9V|A Chain A, Crystal Structure Of Human B-Cell Translocation Gene 2
(Btg2)
Length = 120
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Query: 4 QISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRCIRL 63
+I+AAV FL+ L+ R+ +L+ F L E L + + +HWFPE P++G GYRCIR+
Sbjct: 5 EIAAAVGFLSSLL-RTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCIRI 63
Query: 64 NKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
N K D I+ A +G+S + LP ELTLWVDP+EV R
Sbjct: 64 NH--KXDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYR 105
>pdb|2Z15|A Chain A, Crystal Structure Of Human Tob1 Protein
pdb|2Z15|B Chain B, Crystal Structure Of Human Tob1 Protein
pdb|2Z15|C Chain C, Crystal Structure Of Human Tob1 Protein
pdb|2Z15|D Chain D, Crystal Structure Of Human Tob1 Protein
Length = 130
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
MQ +I A+ F+ + ++ F +L LL ++ HW+PE P +G G+RC
Sbjct: 8 MQLEIQVALNFIISYL---YNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRC 64
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
I + + V D ++E A+K G+ +D+R LP +L++W+DP EV +
Sbjct: 65 IHIGEKV--DPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQ 109
>pdb|2D5R|B Chain B, Crystal Structure Of A Tob-Hcaf1 Complex
Length = 116
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
MQ +I A+ F+ I ++ F +L LL ++ HW+PE P +G G+RC
Sbjct: 2 MQLEIQVALNFI---ISYLYNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRC 58
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
I + + V D ++E A+K G+ +D+R LP +L++W+DP EV +
Sbjct: 59 IHIGEKV--DPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQ 103
>pdb|3SIL|A Chain A, Sialidase From Salmonella Typhimurium
Length = 379
Score = 28.5 bits (62), Expect = 0.87, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 18 RSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPN-RGQGYRCIRLNKNVKKDTILENA 76
RS+ S A L + + KL + ++P+ N G GY C+ KNV K+T+
Sbjct: 306 RSDISLYAHNLYSGEVKLID--------DFYPKVGNASGAGYSCLSYRKNVDKETLYVVY 357
Query: 77 AKAVGMSYEDM--RLPV 91
+ ++D+ LPV
Sbjct: 358 EANGSIEFQDLSRHLPV 374
>pdb|1DIL|A Chain A, Sialidase From Salmonella Typhimurium Complexed With Apana
And Epana Inhibitors
pdb|1DIM|A Chain A, Sialidase From Salmonella Typhimurium Complexed With Epana
Inhibitor
pdb|2SIL|A Chain A, The Structures Of Salmonella Typhimurium Lt2 Neuraminidase
And Its Complex With A Transition State Analogue At 1.6
Angstroms Resolution
pdb|2SIM|A Chain A, The Structures Of Salmonella Typhimurium Lt2 Neuraminidase
And Its Complex With A Transition State Analogue At 1.6
Angstroms Resolution
Length = 381
Score = 28.5 bits (62), Expect = 0.87, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 18 RSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPN-RGQGYRCIRLNKNVKKDTILENA 76
RS+ S A L + + KL + ++P+ N G GY C+ KNV K+T+
Sbjct: 308 RSDISLYAHNLYSGEVKLID--------DFYPKVGNASGAGYSCLSYRKNVDKETLYVVY 359
Query: 77 AKAVGMSYEDM--RLPV 91
+ ++D+ LPV
Sbjct: 360 EANGSIEFQDLSRHLPV 376
>pdb|1Y42|X Chain X, Crystal Structure Of A C-Terminally Truncated Cyt-18
Protein
pdb|2RKJ|A Chain A, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|B Chain B, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|E Chain E, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|F Chain F, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|I Chain I, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|J Chain J, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|M Chain M, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|N Chain N, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
Length = 392
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 12 LAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPN----RGQGYRCIRLNKNV 67
L KL E +T A EA + ++N+ NHW+ + P R G+ +R+ +
Sbjct: 139 LKKLWENVDTQMRARGYEADWARKRGIVNN---NHWWNKQPMLEVLRRVGH-ALRIGPML 194
Query: 68 KKDTILENAAKAVGMSYEDMRLPV 91
+DT+ + G+S+ + P+
Sbjct: 195 SRDTVKNKMTQGDGVSFAEFTYPI 218
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 31 FKTKLAELLNDRFANHWFPEAPNRGQGYRCIRLNKNVKKDTILENAAKAVGMSY 84
F + AE++ +H FPE R + R +NK V EN AK + Y
Sbjct: 282 FTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMY 335
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 3 DQISAAVLFLAKLIERSNTSCD 24
+Q SA V+ + KL ERS CD
Sbjct: 117 EQRSATVVMMTKLEERSRVKCD 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,943,917
Number of Sequences: 62578
Number of extensions: 100161
Number of successful extensions: 251
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 10
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)