RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11249
(105 letters)
>gnl|CDD|149033 pfam07742, BTG, BTG family.
Length = 119
Score = 125 bits (317), Expect = 6e-39
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
M +I+AAV F+ +L+ Q+E F +L L +++ HW+P+ P++GQ YRC
Sbjct: 1 MYTEIAAAVNFVCRLL-FGKGKLPRRQVEIFAEELENALVEKYKGHWYPDNPSKGQAYRC 59
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
IR+N N D +E AA G+ YED+ LP ELT+WVDP EV R
Sbjct: 60 IRINCNEGMDPCIEKAAAESGLDYEDLLSLLPKELTIWVDPGEVSYR 106
>gnl|CDD|128410 smart00099, btg1, tob/btg1 family. The tob/btg1 is a family of
proteins that inhibit cell proliferation.
Length = 108
Score = 111 bits (280), Expect = 1e-33
Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 5/107 (4%)
Query: 1 MQDQISAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC 60
M+ +I+AAV F+ L+ R + ++E F KL LL +++ NHW+PE P +G G+RC
Sbjct: 1 MKLEIAAAVNFITSLL-RKHNKLSKRRVEIFAEKLTRLLKEKYKNHWYPEKPYKGSGFRC 59
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMR--LPVELTLWVDPHEVCCR 105
IR+N+ V D ++E A K G+ +D+ LP ELTLWVDP EV R
Sbjct: 60 IRINQKV--DPVIEQACKESGLDIDDLGGNLPKELTLWVDPFEVSYR 104
>gnl|CDD|219397 pfam07393, Sec10, Exocyst complex component Sec10. This family
contains the Sec10 component (approximately 650 residues
long) of the eukaryotic exocyst complex, which
specifically affects the synthesis and delivery of
secretory and basolateral plasma membrane proteins.
Length = 685
Score = 31.5 bits (72), Expect = 0.056
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 6 SAAVLFLAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWF 48
V FL+ + + S D LEAF T++ L+ H
Sbjct: 555 QEVVDFLSSVHSQLVGSLDGSNLEAFLTEIGLRLHRLLLEHLK 597
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 29.5 bits (67), Expect = 0.20
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 61 IRLNKNVKKDTILENAAKAVGMSYEDMRLP 90
IRL + D + AAK G M+LP
Sbjct: 97 IRLGRPNATDEEVIEAAKEAGAHDFIMKLP 126
>gnl|CDD|239021 cd02070, corrinoid_protein_B12-BD, B12 binding domain of corrinoid
proteins. A family of small methanogenic corrinoid
proteins that bind methyl-Co(III)
5-hydroxybenzimidazolylcobamide as a cofactor. They play
a role on the methanogenesis from trimethylamine,
dimethylamine or monomethylamine, which is initiated by
a series of corrinoid-dependent methyltransferases.
Length = 201
Score = 28.0 bits (63), Expect = 0.65
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 54 RGQGYRCIRLNKNVKKDTILENA----AKAVGMS 83
G+ I L ++V + +E +G+S
Sbjct: 107 EANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLS 140
>gnl|CDD|224373 COG1456, CdhE, CO dehydrogenase/acetyl-CoA synthase gamma subunit
(corrinoid Fe-S protein) [Energy production and
conversion].
Length = 467
Score = 28.2 bits (63), Expect = 0.68
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 11 FLAKLIERSNTSCDADQL--EAFKTKLAELLN 40
F KLI+R T D L E F KL +L
Sbjct: 29 FATKLIDREATPDDCPPLIKEKFAKKLEKLDE 60
>gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase,
ribosomal protein L3-specific. Members of this protein
family methylate ribosomal protein L3 on a glutamine
side chain. This family is related to HemK, a
protein-glutamine methyltranferase for peptide chain
release factors [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 284
Score = 27.5 bits (62), Expect = 1.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 35 LAELLNDRFANHWFPEAPNR 54
+AEL+ D FA PE R
Sbjct: 105 IAELIEDGFAPWLEPEPVKR 124
>gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein.
Length = 734
Score = 27.0 bits (60), Expect = 1.8
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 31/66 (46%)
Query: 42 RFANHWFPEAPNRGQGYRCIRLNKNVKKDTILENAAKA---------------VGMSYED 86
+FA HW P C KK+ I+E +A + M YE
Sbjct: 159 KFATHWLP---------FC-------KKNKIVERCPEAYFSSNSHSWSPETEQIKMMYES 202
Query: 87 MRLPVE 92
M++ VE
Sbjct: 203 MKVRVE 208
>gnl|CDD|225654 COG3112, COG3112, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 121
Score = 26.3 bits (58), Expect = 2.1
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 46 HWFPEAPNRGQGYRCIRLNKNVKKDTILENAAKAVGMSYEDMRLPVELTLWVDPHEVCCR 105
HWF E ++ N K D +L+ A G E E TLW+D EV R
Sbjct: 26 HWFNEE---------VKSN-LAKLDEVLQAADTLKGSEREWQLAGHEYTLWMDGEEVMVR 75
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 26.5 bits (59), Expect = 3.2
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 33 TKLAELLNDRFANHWFPEAPNRGQGYRCIRLNKNVKK 69
L + LN F+NH R G + +KK
Sbjct: 338 IGLTDGLNRLFSNHIPLLRALRNLGLLALENFPPLKK 374
>gnl|CDD|239018 cd02067, B12-binding, B12 binding domain (B12-BD). This domain
binds different cobalamid derivates, like B12
(adenosylcobamide) or methylcobalamin or methyl-Co(III)
5-hydroxybenzimidazolylcobamide, it is found in several
enzymes, such as glutamate mutase, methionine synthase
and methylmalonyl-CoA mutase. Cobalamin undergoes a
conformational change on binding the protein; the
dimethylbenzimidazole group, which is coordinated to
the cobalt in the free cofactor, moves away from the
corrin and is replaced by a histidine contributed by
the protein. The sequence Asp-X-His-X-X-Gly, which
contains this histidine ligand, is conserved in many
cobalamin-binding proteins.
Length = 119
Score = 25.5 bits (57), Expect = 3.7
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 54 RGQGYRCIRLNKNVKKDTILENA----AKAVGMS 83
R G+ I L +V + I+E A A A+G+S
Sbjct: 24 RDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLS 57
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 26.1 bits (58), Expect = 4.0
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 10 LFLAKLIERSNT----SCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRCI 61
L L+ + + T CD D L+AF K ++L E P + +C+
Sbjct: 180 LLLSATFQTAETILSLPCDCDWLDAFVEKFSDLETQDLDRLLLQELPTQ-TLLKCL 234
>gnl|CDD|172310 PRK13772, PRK13772, formimidoylglutamase; Provisional.
Length = 314
Score = 25.9 bits (57), Expect = 4.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 12 LAKLIERSNTSCDADQLEAFKTKLAELLNDRFANHWFP 49
L L + + CD LE+ + LAE++ + A P
Sbjct: 82 LPALADAGDVVCDDGDLESAQAALAEVVAEVLAAGARP 119
>gnl|CDD|177505 PHA03000, PHA03000, Hypothetical protein; Provisional.
Length = 566
Score = 25.8 bits (57), Expect = 5.5
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 7 AAVLFLAKLIERSNTSCDADQLEAFKTKLAELLND-RF 43
A L++ LI+ N S ++ ++ +KT + ELL D +F
Sbjct: 84 APTLYVKALIK--NYSSFSNAIQTYKTLVQELLQDEKF 119
>gnl|CDD|227226 COG4889, COG4889, Predicted helicase [General function prediction
only].
Length = 1518
Score = 25.9 bits (57), Expect = 5.6
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 12 LAKLIERSNTSCDADQLEAFKTKLAEL-LNDRFANHW------FPEAPNRGQGYRCIRLN 64
LAK R S D +L +LA+L LN W EA YR I++
Sbjct: 1374 LAKEAPRIALSEDFKELSMLGKELADLHLNYESGEMWDSIKHNKLEAAEMDGYYRVIKMK 1433
Query: 65 KNVKKDTILEN 75
K+ K DTI+ N
Sbjct: 1434 KDKKGDTIIYN 1444
>gnl|CDD|147018 pfam04656, Pox_E6, Pox virus E6 protein. Family of pox virus E6
proteins.
Length = 566
Score = 25.8 bits (57), Expect = 5.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 7 AAVLFLAKLIERSNTSCDADQLEAFKTKLAELLND-RF 43
L++ LI+ N S +D +E +KT + ELL D RF
Sbjct: 84 VPTLYVKALIK--NYSSFSDAIETYKTLVQELLQDKRF 119
>gnl|CDD|204160 pfam09186, DUF1949, Domain of unknown function (DUF1949).
Members of this family pertain to a set of functionally
uncharacterized hypothetical bacterial proteins. They
adopt a ferredoxin-like fold, with a
beta-alpha-beta-beta-alpha-beta arrangement.
Length = 55
Score = 23.9 bits (53), Expect = 6.6
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 23 CDADQLEAFKTKLAELLN 40
+++EAF+ KL +L +
Sbjct: 37 VPEEEVEAFQAKLTDLTS 54
>gnl|CDD|212586 cd11717, THUMP_THUMPD1_like, THUMP domain-containing protein
1-like. This family contains THUMP domain-only proteins
including THUMP domain-containing protein 1 and
Saccharomyces cerevisiae Tan1. Tan1 is non essential and
has been shown to be required for the formation of the
modified nucleoside N(4)-acetylcytidine (ac(4)C) in
tRNA. To date, there is no functional information
available about THUMPD1. The THUMP domain is named after
thiouridine synthases, methylases and PSUSs. The domain
consists of about 110 amino acid residues. It is
predicted to be an RNA-binding domain and probably
functions by delivering a variety of RNA modification
enzymes to their targets.
Length = 158
Score = 25.2 bits (56), Expect = 7.1
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 20 NTSCDADQLEAFKTKLAELLNDRFANHWFPEAPNRGQGYRC---IRLNKNVKKDTILENA 76
+ +C A LE + ELL F + + R N + +D +++
Sbjct: 72 DVTCKAS-LEEIEKLAKELLKKHF------PTAEPPKTFAVECKSRNNNKLSRDEVIKAV 124
Query: 77 AKAVG 81
A+ V
Sbjct: 125 AELVP 129
>gnl|CDD|236696 PRK10458, PRK10458, DNA cytosine methylase; Provisional.
Length = 467
Score = 25.4 bits (56), Expect = 7.5
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 28 LEAFKTK-LAELLNDRFANHWFPEAPNR 54
LE + K LA LN NHW R
Sbjct: 27 LEIYDVKTLAAQLNGVGENHWSRAILKR 54
>gnl|CDD|239020 cd02069, methionine_synthase_B12_BD, B12 binding domain of
methionine synthase. This domain binds methylcobalamin,
which it uses as an intermediate methyl carrier from
methyltetrahydrofolate (CH3H4folate) to homocysteine
(Hcy).
Length = 213
Score = 24.9 bits (55), Expect = 8.2
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 57 GYRCIRLNKNVKKDTILENA----AKAVGMS 83
GY I L V + ILE A A +G+S
Sbjct: 116 GYEVIDLGVMVPIEKILEAAKEHKADIIGLS 146
>gnl|CDD|227808 COG5521, COG5521, Predicted integral membrane protein [Function
unknown].
Length = 275
Score = 25.2 bits (55), Expect = 9.1
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 4 QISAAVLFLAKL----IERSNTSCDADQLEAFKTKLAELLNDRFA 44
Q+ +FL L + + D LE+F + + D+FA
Sbjct: 32 QLLFLFIFLNALLMAPVAVHFANMDTYPLESFMPSAIQPVTDKFA 76
>gnl|CDD|181432 PRK08453, fliD, flagellar capping protein; Validated.
Length = 673
Score = 25.2 bits (55), Expect = 9.2
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 14 KLIERSNTSCDADQLEAFKTKLAELLNDRF 43
K+ E S T DA L K ELL R+
Sbjct: 620 KIYEDSLTR-DAKSLTKDKENAQELLKTRY 648
>gnl|CDD|216969 pfam02310, B12-binding, B12 binding domain. This domain binds to
B12 (adenosylcobamide), it is found in several enzymes,
such as glutamate mutase, methionine synthase, and
methylmalonyl-CoA mutase. It contains a conserved
DxHxxGx(41)SxVx(26)GG motif, which is important for B12
binding.
Length = 121
Score = 24.6 bits (54), Expect = 9.9
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 54 RGQGYRCIRLNKNVKKDTILENA----AKAVGMS 83
R G+ I L +V + I+E VG+S
Sbjct: 25 RAAGFEVILLGADVPPEDIVEAIREEKPDVVGLS 58
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.410
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,151,632
Number of extensions: 409564
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 38
Length of query: 105
Length of database: 10,937,602
Length adjustment: 70
Effective length of query: 35
Effective length of database: 7,832,822
Effective search space: 274148770
Effective search space used: 274148770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)